Citrus Sinensis ID: 001064
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1167 | 2.2.26 [Sep-21-2011] | |||||||
| Q1JPZ7 | 752 | Pre-mRNA-processing facto | yes | no | 0.506 | 0.785 | 0.325 | 1e-72 | |
| Q86UA1 | 669 | Pre-mRNA-processing facto | yes | no | 0.484 | 0.844 | 0.313 | 3e-72 | |
| Q4KLU2 | 641 | Pre-mRNA-processing facto | N/A | no | 0.449 | 0.819 | 0.340 | 2e-71 | |
| Q8K2Z2 | 665 | Pre-mRNA-processing facto | yes | no | 0.481 | 0.845 | 0.314 | 5e-69 | |
| O74970 | 612 | Pre-mRNA-processing facto | yes | no | 0.366 | 0.699 | 0.329 | 7e-66 | |
| Q7KRW8 | 1066 | Pre-mRNA-processing facto | yes | no | 0.153 | 0.167 | 0.362 | 6e-33 | |
| P39682 | 629 | Pre-mRNA-processing facto | yes | no | 0.189 | 0.351 | 0.248 | 5e-24 | |
| O94260 | 434 | Putative G3BP-like protei | no | no | 0.335 | 0.900 | 0.243 | 1e-21 | |
| Q13283 | 466 | Ras GTPase-activating pro | no | no | 0.102 | 0.257 | 0.369 | 3e-14 | |
| Q5RB87 | 466 | Ras GTPase-activating pro | no | no | 0.102 | 0.257 | 0.369 | 3e-14 |
| >sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 206/632 (32%), Positives = 315/632 (49%), Gaps = 41/632 (6%)
Query: 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 141
E +RL +V+ N DF+ W LL+ E+ +++++ R+ +DAF +P CYGYWKKYAD
Sbjct: 151 EYERLSKVVEDNPEDFNGWVYLLQYVEQ--ENHLLGSRKAFDAFFLHYPYCYGYWKKYAD 208
Query: 142 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF----AINTYGDPET-IRRLFERGLA 196
E + G + EVY R +Q + SVD+WLHY F + G+ E+ IR +E +
Sbjct: 209 IERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRASYEHAVL 268
Query: 197 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256
GTD+ S LW+ YI +E Q + + V IY R+L P Q ++F FK+ S
Sbjct: 269 ACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLCIPTQLYSQHFQKFKDHVQSNNPK 328
Query: 257 ELRTAEEVDAAAVAVAAAPSETG---AEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-E 312
+ EE + V +A A +G AE +A EE+ P TE P +TE E +
Sbjct: 329 HFLSEEEFVSLRVELANANKPSGDEDAETEAPGEEL-PPGTEDLPDPAKR-VTEIENMRH 386
Query: 313 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK 372
K I R+EM+ + SK FE I+RPYFHVK L T+L NW YLDF +G +
Sbjct: 387 KVIETRQEMFNHNEHEVSKRWAFEEGIKRPYFHVKALEKTQLNNWREYLDFELENGTPER 446
Query: 373 VVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432
VV L+ERCLIACA Y E+WI+Y +E S S + + +A V + + P +HL A F
Sbjct: 447 VVVLFERCLIACALYEEFWIKYAKYLE-SYSTEAVRHIYKKACTVHLPKKPNVHLLWAAF 505
Query: 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE 492
+EQ G ID AR+ + V + PGL ++ ++ERR GN+E+A +L + AI G+
Sbjct: 506 EEQQGSIDEARSILKAVEV-SVPGLAMVRLRRVSLERRHGNMEEAEALLQDAIT--NGRN 562
Query: 493 HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS-KPLLEALIHFESIQSSPKQ 551
S++ + +R L V ++ +A+++L+++++ + + K L L S +
Sbjct: 563 SSES-SFYSVKLARQLVKVQKSIGRAKKVLLEAVEKDETNPKLYLNLLELEYSGDVQQNE 621
Query: 552 IDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFL 610
+ + D+ L S+ S ++R+ ++FL FG D + A ++H RL
Sbjct: 622 AEII-ACFDRALSSSMALESRITFSQRK------VDFLEDFGSDINTLMAAYEQHQRLLA 674
Query: 611 PHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTW 670
S KR AE+ SE + + S A M ++ + Q +W
Sbjct: 675 EQESF----KRKAEN--GSEEPDAKRQRTDDQSVASGQMMDMQANHAGYNYNNWYQYNSW 728
Query: 671 PPATQAQAQQWNQQAAYGAYSAYGSSYPTPQT 702
W Q YG Y+ Y YP P T
Sbjct: 729 -----GSQNSWGQYGQYGQYNQY---YPPPPT 752
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Involved in pre-mRNA splicing. Danio rerio (taxid: 7955) |
| >sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 192/613 (31%), Positives = 296/613 (48%), Gaps = 48/613 (7%)
Query: 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 141
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 80 EYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDRFFIHYPYCYGYWKKYAD 137
Query: 142 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLA 196
E R ++ EVY R +Q + SVD+W+HY F T GDPET IR FE +
Sbjct: 138 LEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVL 197
Query: 197 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256
GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE +
Sbjct: 198 AAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPR 257
Query: 257 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYI 315
+L T E+ +A+ +G + ++ P E + P +TE E + + I
Sbjct: 258 DLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRII 314
Query: 316 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK 375
+ +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV
Sbjct: 315 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVV 374
Query: 376 LYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 435
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+ A F+EQ
Sbjct: 375 LFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQ 433
Query: 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 495
G+I+ AR + E GL ++ ++ERR GNLE+A L + AI K S
Sbjct: 434 QGNINEARNILKTF-EECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESS 492
Query: 496 TLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 554
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 493 ----FYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEEN 548
Query: 555 LEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHR 613
+ DK + + ++R+ +EFL FG D + A D H L
Sbjct: 549 ILNCFDKAVHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQTLLKEQD 602
Query: 614 STSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS--------------QNPW 659
S KR AE+ K A + S Q + G ++ QNPW
Sbjct: 603 SL----KRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVYNYSAWYQYNYQNPW 658
Query: 660 AAGYGVQPQTWPP 672
G Q +PP
Sbjct: 659 NYG-----QYYPP 666
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Involved in pre-mRNA splicing. Homo sapiens (taxid: 9606) |
| >sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 190/558 (34%), Positives = 286/558 (51%), Gaps = 33/558 (5%)
Query: 84 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 143
++ W V+A DF+ WT LL+ E+ ++++ R+ +DAFLA +P CYGYWKKYAD E
Sbjct: 57 EKYWKSVQAYPEDFNTWTYLLQYVEQ--ENHLFAARKAFDAFLAHYPYCYGYWKKYADLE 114
Query: 144 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYV 198
+ ++ + EVY R +Q +T SVD+W+HY F T DPET +R FE +
Sbjct: 115 KKNNNILEADEVYRRGIQAITLSVDLWMHYLNFLKETLDPADPETSLTLRGTFEHAVVSA 174
Query: 199 GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 258
G D+ S LW+ YI +E Q S V IY+R+L P Q +F FKE E
Sbjct: 175 GLDFRSDKLWEMYINWETEQGNLSGVTSIYSRLLGIPTQFYSLHFQRFKEHIQGHLPREF 234
Query: 259 RTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYIAV 317
T+E+ +A+ G + P E+ P TE E + + I V
Sbjct: 235 LTSEKFIELRKELASMTLHGGTN------DDIPSGLEEIKDPAKRT-TEVENMRHRIIEV 287
Query: 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 377
+E++ + SKI FE I+RPYFHVKPL +L NW YL+F +G ++V L+
Sbjct: 288 HQEIFNLNEHEVSKIWNFEEEIKRPYFHVKPLEKAQLNNWKEYLEFELENGSNERIVILF 347
Query: 378 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 437
ERC+IACA Y E+WI+Y ME + S++ + RA HV + + P +HL A F+EQ G
Sbjct: 348 ERCVIACACYEEFWIKYAKYME-NHSVEGVRHVYNRACHVHLAKKPMVHLLWAAFEEQQG 406
Query: 438 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 497
+++ AR + + T GL ++ N+ERR GN+++A L E+A+ K S
Sbjct: 407 NLEEARRILKNIETAIE-GLAMVRLRRVNLERRHGNVKEAEHLLEEAMNKTKTSSESS-- 463
Query: 498 PMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLE 556
YA + +R L V N KAR++L +++ + + L L+ E KQ + E
Sbjct: 464 --FYAIKLARHLFKVQANVVKARKVLSNAIQKDKENTKLYLNLLEME-YNCDIKQNE--E 518
Query: 557 QLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHRST 615
++ F + S + A R + S +EFL FG D + + H +L L H+
Sbjct: 519 NILAAF---DKAIKSPMSIAMRVKFSQRKVEFLEDFGSDVNKLLDTYNEHQKL-LKHQ-- 572
Query: 616 SELRKRHAEDFLASERAK 633
++ KR AE+ L AK
Sbjct: 573 -DIVKRKAENGLEQPEAK 589
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Involved in pre-mRNA splicing. Xenopus laevis (taxid: 8355) |
| >sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 193/614 (31%), Positives = 300/614 (48%), Gaps = 52/614 (8%)
Query: 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 141
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 78 EFEKFWKTVEMNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFVHYPYCYGYWKKYAD 135
Query: 142 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPE---TIRRLFERGLA 196
E R ++ + EVY R +Q + SVD+W+HY F T GD E TIR FE +
Sbjct: 136 LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRGTFEHAVL 195
Query: 197 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256
GTD+ S LW+ YI +E Q V +Y RIL P Q +F FKE +
Sbjct: 196 AAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRFKEHVQNNLPR 255
Query: 257 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYI 315
+L T E+ +A+ +G + ++ P E S + +TE E + + I
Sbjct: 256 DLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDISP--AKLITEIENMRHRII 311
Query: 316 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDGDFNKVV 374
+ +EM+ + SK FE I+RPYFHVKPL + +NW YL+F +G +VV
Sbjct: 312 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKKNWKEYLEFEIENGTHERVV 371
Query: 375 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P H+ A F+E
Sbjct: 372 VLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEE 430
Query: 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 494
Q G+I+ AR + E GL ++ ++ERR GN+E+A L + AI K S
Sbjct: 431 QQGNINEARIILRTF-EECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNAKSNNES 489
Query: 495 QTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQID 553
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 490 S----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSCDLKQNEE 545
Query: 554 FLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPH 612
+ DK + + ++R+ +EFL FG D + A D H L
Sbjct: 546 NILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQTLL--- 596
Query: 613 RSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMG-------AYPSS-------QNP 658
+ KR AE+ SE + K+++ S AQ + G AY S QNP
Sbjct: 597 -KEQDTLKRKAEN--GSEEPEEKKAHTEDLSSAQIIDGDLQANQAAYNYSAWYQYNYQNP 653
Query: 659 WAAGYGVQPQTWPP 672
W G Q +PP
Sbjct: 654 WNYG-----QYYPP 662
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Involved in pre-mRNA splicing. Mus musculus (taxid: 10090) |
| >sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp39 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 158/479 (32%), Positives = 244/479 (50%), Gaps = 51/479 (10%)
Query: 90 VKANSSDFSAWTALLEETEKL--------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 141
+ N DF AW L+ +E L ++ I +R VYD FL ++PL +GYWKKYAD
Sbjct: 21 INKNPDDFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYAD 80
Query: 142 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201
E V + +YER + G+ +SVD+W +YC F + T GD +R LF +G VG D
Sbjct: 81 FEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLD 140
Query: 202 YLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 261
+LS P WDKY+E+E Q+ V + R++ P+ Q RYF F + + S+P+ +L
Sbjct: 141 FLSHPFWDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQPIQQL--- 197
Query: 262 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG----LTEAEELE----- 312
P + A ++A D T + +K VSAG E ELE
Sbjct: 198 ------------LPPDVLASIRA-------DVTREPAKVVSAGSKQITVERGELEIEREM 238
Query: 313 --KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF 370
+ + ++++K + +K FE+ I+RPYFHVK L +L NW YLDF E +GDF
Sbjct: 239 RARIYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDF 298
Query: 371 NKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVF--VKRLPEIHL 427
++ LYERCLI CA Y E+W RY M A ++ RA+ +F + R P I +
Sbjct: 299 QRICHLYERCLITCALYDEFWFRYARWMSAQPDHLNDVSIIYERASCIFASISR-PGIRV 357
Query: 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQA 484
A F+E G+I A+A YQ + T+ PG LEA++ +ERR +L +A ++
Sbjct: 358 QYALFEESQGNIASAKAIYQSILTQL-PGNLEAVLGWVGLERRNAPNYDLTNAHAVLRS- 415
Query: 485 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 543
I +GK ++ +L + + + + + E AR + + + + + + + FE
Sbjct: 416 -IINEGKCNTGITEVLITEDIKLVWKIEGDIELARNMFLQNAPALLDCRHFWISFLRFE 473
|
Function prior to stable branch point recognition by the U1 snRNP particle to facilitate or stabilize the U1 snRNP/5'-splice site interaction. Has a direct role in the assembly or function of a catalytically active spliceosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 84 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 143
D+ W VK +S+DF+ WT LL+ + + + R YD FL+ +P CYGYW+KYAD+E
Sbjct: 366 DKYWRAVKEDSTDFTGWTYLLQYVDN--ESDAEAAREAYDTFLSHYPYCYGYWRKYADYE 423
Query: 144 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPET-IRRLFERGLAYVGTDY 202
R G +V+ER ++ + SVD+W+HY + + +GD ET +R +ER + G ++
Sbjct: 424 KRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEF 483
Query: 203 LSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 262
S LWD YI +E + + RV IY R+L P Q + +F +F++ ++ E
Sbjct: 484 RSDKLWDAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDLINQHDVTITLANE 543
Query: 263 EV 264
EV
Sbjct: 544 EV 545
|
Involved in pre-mRNA splicing. Drosophila melanogaster (taxid: 7227) |
| >sp|P39682|PRP39_YEAST Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 65/286 (22%)
Query: 126 LAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC-IFAINTYGDP 184
L ++PL +G+WK++A E ++ + K + V +V+ S+++W Y + +N +
Sbjct: 81 LRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKWFPTSLELWCDYLNVLCVNNPNET 140
Query: 185 ETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 244
+ IR FE +G +LS P WDK+IE+E Q+ W V IY I+E P+ Q R+F+
Sbjct: 141 DFIRNNFEIAKDLIGKQFLSHPFWDKFIEFEVGQKNWHNVQRIYEYIIEVPLHQYARFFT 200
Query: 245 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 304
S+K+F + L+T +D +E
Sbjct: 201 SYKKFLNEK---NLKTTRNIDIVLRKTQTTVNEIW------------------------- 232
Query: 305 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 364
+F+SK I++P+F++ + +LENW YL F+
Sbjct: 233 ----------------------QFESK-------IKQPFFNLGQVLNDDLENWSRYLKFV 263
Query: 365 -----ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 405
D +F V+ +++RCLI C + W+ Y+ + D
Sbjct: 264 TDPSKSLDKEF--VMSVFDRCLIPCLYHENTWMMYIKWLTKKNISD 307
|
Function prior to stable branch point recognition by the U1 snRNP particle to facilitate or stabilize the U1 snRNP/5'-splice site interaction. Has a direct role in the assembly or function of a catalytically active spliceosome. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 193/448 (43%), Gaps = 57/448 (12%)
Query: 720 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVD-GDSTESASSMLDIHSLVISLNF-- 776
++G FV +YY L ++P+ +H FY+ S++I D G+S +IH+ ++ L+F
Sbjct: 17 EIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQN 76
Query: 777 TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 836
+ I ++SL S NGG+++ V G + K R KF QTFFLA Q GYFVLNDIF FL
Sbjct: 77 CKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSR-KFAQTFFLAEQPNGYFVLNDIFRFL 135
Query: 837 DEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSV----HIED 892
E+ + +P E E+ +A+ YV +++E++ S H +D
Sbjct: 136 REDVEEEEESPDAVE-------------KEKKDVASEPYVNGVQSQEHLPSAKEEGHYQD 182
Query: 893 DAT--DNYSLPEQQQDEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEPQ 950
A +N++ +E + +P E PV +V V + +
Sbjct: 183 PAATENNFATAALISNETDSLNQATLAVPEE-----------PVIQVTEASVPSFVSQQE 231
Query: 951 RKTYASILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVS- 1009
+ L + + + A+ + + +D P + SS +G +
Sbjct: 232 NQLQDEALTSNSKNADAIGASDANVATAPKSWADLIARNHPDVKSQASVSSTASTTGQTV 291
Query: 1010 -------SHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG 1062
+ P + + ++ L SV+V+N+P + ++ FG +K
Sbjct: 292 KGVNADQTQQPTAPYTQSNELLET------SVFVKNIPPETSDVSLKSAMSIFGPVK--A 343
Query: 1063 VFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPN-TGSTSRGGRR 1121
+ RK A+V+F + VQ A+ +Q+ + IEERR +G ++ G +
Sbjct: 344 IEFARRKGT-----AYVDFVNHECVQLALNKKTLQINNATLNIEERRRLFSGKFNKSGDK 398
Query: 1122 GRGRGSYQTDAPRGRFGGRGLGRGSAQD 1149
+ +Y R G RG G +++
Sbjct: 399 -KSNDNYNGMKRNFRKGNRGAFDGRSKE 425
|
Probable scaffold protein that may be involved in mRNA transport. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 773
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 774 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 828
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 829 LNDIFHFLDE 838
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
|
May be a regulated effector of stress granule assembly. Phosphorylation-dependent sequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine and cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwinds preferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging 3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along the bound single-stranded DNA. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii GN=G3BP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 773
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 774 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 828
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 829 LNDIFHFLDE 838
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
|
May be a regulated effector of stress granule assembly. Phosphorylation-dependent sequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine and cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwinds preferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging 3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along the bound single-stranded DNA. Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1167 | ||||||
| 225437987 | 832 | PREDICTED: pre-mRNA-processing factor 39 | 0.610 | 0.855 | 0.772 | 0.0 | |
| 356505060 | 828 | PREDICTED: pre-mRNA-processing factor 39 | 0.609 | 0.858 | 0.733 | 0.0 | |
| 356570672 | 828 | PREDICTED: pre-mRNA-processing factor 39 | 0.608 | 0.857 | 0.731 | 0.0 | |
| 255571192 | 829 | Pre-mRNA-processing protein prp39, putat | 0.605 | 0.852 | 0.732 | 0.0 | |
| 449445628 | 831 | PREDICTED: pre-mRNA-processing factor 39 | 0.628 | 0.882 | 0.676 | 0.0 | |
| 147795953 | 826 | hypothetical protein VITISV_027789 [Viti | 0.582 | 0.823 | 0.710 | 0.0 | |
| 224070092 | 878 | predicted protein [Populus trichocarpa] | 0.544 | 0.724 | 0.760 | 0.0 | |
| 357510169 | 838 | Pre-mRNA-processing factor [Medicago tru | 0.604 | 0.842 | 0.671 | 0.0 | |
| 224129528 | 674 | predicted protein [Populus trichocarpa] | 0.547 | 0.948 | 0.751 | 0.0 | |
| 297843218 | 1328 | hypothetical protein ARALYDRAFT_333729 [ | 0.574 | 0.505 | 0.699 | 0.0 |
| >gi|225437987|ref|XP_002272685.1| PREDICTED: pre-mRNA-processing factor 39-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1130 bits (2922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/730 (77%), Positives = 626/730 (85%), Gaps = 18/730 (2%)
Query: 2 DPNAVMQQAPG-VGAPGSGDNVATSENEAMGS-SQAAGYNS-MNGNVVNEAGNATSTENG 58
DPN VMQ+APG + S TS N A SQAAGY+S +NGN + EA N S +NG
Sbjct: 74 DPNTVMQEAPGSITYEASAGTTETSSNLAAAELSQAAGYDSSVNGNAITEARNFPSVDNG 133
Query: 59 TSLGIESGAAAGQELVDGS--AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIV 116
+ + GAA + +GS AMS EEDRLW+IV+ANS DF+AWTAL+EETEK+A+DNI+
Sbjct: 134 NASDV-GGAAVEPQFEEGSVPAMSAEEDRLWSIVRANSLDFNAWTALIEETEKIAEDNIL 192
Query: 117 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 176
KIRRVYDAFLAEFPLCYGYWKKYADHEAR+GS++KVVEVYERAVQGVTYSVDIWLHYCIF
Sbjct: 193 KIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIEKVVEVYERAVQGVTYSVDIWLHYCIF 252
Query: 177 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 236
AI+TYGDP+TIRRLFERGLAYVGTDYLS+PLWDK+IEYEY QQEWSR+AMIYTRILENP
Sbjct: 253 AISTYGDPDTIRRLFERGLAYVGTDYLSYPLWDKFIEYEYSQQEWSRLAMIYTRILENPN 312
Query: 237 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQ 296
QQLDRY +SFKE A SRPLSEL TAEE A A A + A + E E +PD EQ
Sbjct: 313 QQLDRYLNSFKELAGSRPLSELTTAEEAAATAGAF------SDANGQGIEGEARPDEVEQ 366
Query: 297 TSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN 356
+SKPVSAGLT+AEELEKYIA+REEMYKKAK+FDSKIIGFETAIRRPYFHV+PL+V ELEN
Sbjct: 367 SSKPVSAGLTDAEELEKYIAIREEMYKKAKDFDSKIIGFETAIRRPYFHVRPLNVAELEN 426
Query: 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416
WHNYLDFIER DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLA+NALARAT
Sbjct: 427 WHNYLDFIERGDDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALARATQ 486
Query: 417 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476
VFVKR PEIHLFAARF+EQ GDI G+RAAYQLVHTE SPGLLEAIIKHANME RLGNLED
Sbjct: 487 VFVKRQPEIHLFAARFREQKGDIPGSRAAYQLVHTEISPGLLEAIIKHANMEHRLGNLED 546
Query: 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 536
AFSLYEQAIAIEKGKEHSQTLPML+AQYSRFL+LV+ N EKAR+ILV++L+HVQLSKPLL
Sbjct: 547 AFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFLYLVTGNTEKAREILVEALEHVQLSKPLL 606
Query: 537 EALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQ 596
EALIH ESIQS PK+ID L+ LVDKF+ +N +SP+ A+AAEREELS +FLEFL LFGDAQ
Sbjct: 607 EALIHLESIQSLPKRIDHLDSLVDKFIHTNPESPNAASAAEREELSSIFLEFLDLFGDAQ 666
Query: 597 LIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQ 656
IKKA+DRHA+LFL HRSTSEL+KRHAEDFLAS++AK+AKSYSG PSPAQSLMGAYPS+Q
Sbjct: 667 SIKKADDRHAKLFLHHRSTSELKKRHAEDFLASDKAKLAKSYSGVPSPAQSLMGAYPSAQ 726
Query: 657 NPWAAGYGVQPQTWPPATQAQAQQWN----QQAAYGAYSAYGSSYPTPQ--TSVPQNAAY 710
N WA+GYG+QPQ WP ATQAQ QQWN QQAAY AYS YGSSY PQ TSVPQ AAY
Sbjct: 727 NQWASGYGLQPQAWPQATQAQGQQWNPGYTQQAAYNAYSGYGSSYTHPQIPTSVPQTAAY 786
Query: 711 GAYPPAYPAQ 720
GAYPP YP Q
Sbjct: 787 GAYPPTYPVQ 796
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505060|ref|XP_003521310.1| PREDICTED: pre-mRNA-processing factor 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1096 bits (2835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/738 (73%), Positives = 613/738 (83%), Gaps = 27/738 (3%)
Query: 2 DPNAVMQQA---------PGVGAPGSGDNVATSENEAMGSSQAAGYNS-MNGNVVNEAGN 51
DPN+++QQA P GA S + A + A S+ + YNS +NG V N
Sbjct: 67 DPNSILQQAQFSATGESKPAGGAADSNEASAGVGSTAADSTMVSDYNSSVNGGVAGAVTN 126
Query: 52 ATSTENGTSLGIESGAAAGQELVDG-SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKL 110
+ ENG +L G+A ++ DG +A+S EEDRLWNIV+ANS DF+AWT+L+EETEK
Sbjct: 127 TSGLENGNALENADGSADEKQQADGYAALSAEEDRLWNIVRANSLDFTAWTSLIEETEKA 186
Query: 111 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170
A+DNI+KIRRVYDAFLAEFPLCYGYWKKYADHEAR+GS+DKVVEVYERAVQGVTYSVD+W
Sbjct: 187 AEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDMW 246
Query: 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230
LHYCIFAI TYGDP+T+RRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ+W+R+A+IYTR
Sbjct: 247 LHYCIFAITTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAVIYTR 306
Query: 231 ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQ 290
ILENP QQLDRYFSSFKE A +RPLSELRTA+E A AVA SE A +A E EV
Sbjct: 307 ILENPNQQLDRYFSSFKELAGNRPLSELRTADE----AAAVAGVASE--ATGQATEGEVH 360
Query: 291 PDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 350
PD E++ K VSAGLTEAEELEKYIA+REEMYKKAKEFDSKIIGFETAIRRPYFHV+PL+
Sbjct: 361 PDGAERSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLN 420
Query: 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 410
V ELENWHNYLDFIER+GD +K+VKLYERC+IACANYPEYWIRYVLCMEASGSMDLA+N
Sbjct: 421 VGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNV 480
Query: 411 LARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470
LARAT VFVKR PEIH+F ARFKEQ GDIDGARAAYQLVHTETSPGLLEAIIKHANME R
Sbjct: 481 LARATQVFVKRQPEIHIFCARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEYR 540
Query: 471 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530
L +EDAFSLYEQAIAIEKGKEHSQTLPML+AQYSRF++L S NAEKARQILV+ L++V
Sbjct: 541 LEKMEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVL 600
Query: 531 LSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 588
LSKPLLEA++HFE+IQ PK+ IDFLE V KF+M NS+SP A+A EREELS +FLEF
Sbjct: 601 LSKPLLEAILHFEAIQPLPKRVDIDFLESWVVKFIMPNSESPGVASATEREELSSIFLEF 660
Query: 589 LGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSL 648
L LFGD Q IK+AEDRHA+LFLPHRS SEL+KRHAEDFLAS++ K +SYS A SPAQS
Sbjct: 661 LNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKTKAPRSYS-AQSPAQSG 719
Query: 649 MGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQW----NQQAAYGAYSAYGSSYPTPQ--T 702
MGAYP++QN W + YGVQPQTWPP TQAQ QQW QQA+YGAY+ YG +Y Q T
Sbjct: 720 MGAYPNAQNQW-SNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQLPT 778
Query: 703 SVPQNAAYGAYPPAYPAQ 720
SVPQ+ AYGAYPPAYPAQ
Sbjct: 779 SVPQSTAYGAYPPAYPAQ 796
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570672|ref|XP_003553509.1| PREDICTED: pre-mRNA-processing factor 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1083 bits (2800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/738 (73%), Positives = 610/738 (82%), Gaps = 28/738 (3%)
Query: 2 DPNAVMQQA----PGVGAPGSGDNVATSENEAMGSSQA-----AGYNS-MNGNVVNEAGN 51
DPN+V+QQA G P A + +G++ A + YNS +NG VV N
Sbjct: 67 DPNSVLQQAHFSATGDSKPAGAAADANEASAGVGTTAAESTMVSDYNSSVNGGVVGAVAN 126
Query: 52 ATSTENGTSLGIESGAAAGQELVDG-SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKL 110
A ENG +L G+A ++L DG +A+S EEDRLWNIV+ANS DF+AWT+L+EETEK
Sbjct: 127 AVGLENGNALENADGSADEKQLADGYAALSAEEDRLWNIVRANSLDFTAWTSLIEETEK- 185
Query: 111 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170
+DNI+KIRRVYDAFLAEFPLCYGYWKKYADHEAR+GS+DKVVEVYERAVQGVTYSVD+W
Sbjct: 186 TEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDMW 245
Query: 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230
LHYCIFAI+TYGDP T+RRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ+W+ +A+IYTR
Sbjct: 246 LHYCIFAISTYGDPNTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWACLAVIYTR 305
Query: 231 ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQ 290
ILENP QQLDRYFSSFKE A +RPLSELRTA+E A AVA SE A +A E EV
Sbjct: 306 ILENPNQQLDRYFSSFKELAGNRPLSELRTADE----AAAVAGVASE--ATGQATEGEVH 359
Query: 291 PDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 350
PD E++ K VSAGLTEAEELEKYIA+REEMYKKAKEFDSKIIGFETAIRRPYFHV+PL+
Sbjct: 360 PDGAERSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLN 419
Query: 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 410
V ELENWHNYLDFIER+GD +K+VKLYERC+IACANYPEYWIRYVLCMEASGSMDLA+N
Sbjct: 420 VGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNV 479
Query: 411 LARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470
LARAT VFVKR PEIHLF ARFKEQ GDIDGARAAYQLVHTETSPGLLEAIIKHANME R
Sbjct: 480 LARATQVFVKRQPEIHLFCARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEYR 539
Query: 471 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530
LG +EDAFSLYE AIAIEKGKEHSQTLPML+AQYSRF++L S NAEKARQILV+ L++V
Sbjct: 540 LGKMEDAFSLYEHAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVL 599
Query: 531 LSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 588
LSKPLLEAL+HFE+IQ PK+ +DFLE V KF+M NS+S A+ EREELS +FLEF
Sbjct: 600 LSKPLLEALLHFEAIQPLPKRVGVDFLESWVVKFIMPNSESAGVASPTEREELSSIFLEF 659
Query: 589 LGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSL 648
L LFGD Q IK+AEDRHA+LFLPHRS SEL+KRHAEDFL S++ K+ +SYS A SPAQS
Sbjct: 660 LNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLVSDKTKVPRSYS-AQSPAQSA 718
Query: 649 MGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQW----NQQAAYGAYSAYGSSYPTPQ--T 702
MGAYP++QN W YGVQPQTWPP TQAQ QQW QQA+YGAY+ YGS+Y Q T
Sbjct: 719 MGAYPNAQNQW-TNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGSNYVNSQLPT 777
Query: 703 SVPQNAAYGAYPPAYPAQ 720
SVPQ+ AYGAYPPAYPAQ
Sbjct: 778 SVPQSTAYGAYPPAYPAQ 795
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571192|ref|XP_002526546.1| Pre-mRNA-processing protein prp39, putative [Ricinus communis] gi|223534107|gb|EEF35824.1| Pre-mRNA-processing protein prp39, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/728 (73%), Positives = 603/728 (82%), Gaps = 21/728 (2%)
Query: 4 NAVMQQAPGVGAPGSGDNVATSENEAMGSSQAAGYNS-MNGNVVNEAGNATSTENGTS-- 60
NA + P +G + +N A ++ + AAGYNS +NGN+ EAG TS ENG +
Sbjct: 77 NAAYETKPDIGMGTTSENAAATQAPPL----AAGYNSSINGNIGIEAG-ITSAENGIAAD 131
Query: 61 LGIESGAAAGQELVDGSA--MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKI 118
+G E GAAAGQ+ DGS MSGEE+RLW+I+KANS DF AWTAL++ETEK+A D I+KI
Sbjct: 132 MGGE-GAAAGQQFADGSVTPMSGEEERLWSILKANSLDFDAWTALIDETEKVAGDKILKI 190
Query: 119 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178
R+VYDAFLAEFPLCYGYWKKYADHEAR G MDK+VEVYERAV GVTYSVD+WLHYCIF I
Sbjct: 191 RKVYDAFLAEFPLCYGYWKKYADHEARTGYMDKIVEVYERAVLGVTYSVDMWLHYCIFTI 250
Query: 179 NTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 238
NTY DP+TIRRLFERGLAYVGTDYLS+PLWDKYIEYE M EWSRVAMIYTRILE P ++
Sbjct: 251 NTYEDPDTIRRLFERGLAYVGTDYLSYPLWDKYIEYEEMHAEWSRVAMIYTRILEIPNKR 310
Query: 239 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTS 298
LD +F+ FK FAAS LSELRTAEE AA V P + +ANE EV PDA EQ+S
Sbjct: 311 LDDFFNRFKAFAASHALSELRTAEEAAAATVL----PVSSVGGDQANEGEVHPDAAEQSS 366
Query: 299 KPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWH 358
KP SAGLTEAEELEKYIAVREE+YKKAKEFDSKI FET IRRPYFHV+PL+V ELENWH
Sbjct: 367 KPASAGLTEAEELEKYIAVREEIYKKAKEFDSKICDFETGIRRPYFHVRPLNVAELENWH 426
Query: 359 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418
NYLDF+ER+ D NKVVKL+ERCLIACANYPEYWIRY LCMEASGSMDLA NALARAT VF
Sbjct: 427 NYLDFLEREDDLNKVVKLFERCLIACANYPEYWIRYTLCMEASGSMDLASNALARATQVF 486
Query: 419 VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 478
VKR PEIHLFAARF+EQNGD+ GARAAYQLVHTE +PGL EA++KHANME RLGNL+DA
Sbjct: 487 VKRRPEIHLFAARFREQNGDVPGARAAYQLVHTEIAPGLFEAVVKHANMEHRLGNLKDAC 546
Query: 479 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 538
SLYEQAIAIEKGKEHSQ LPMLYAQY+RFL+LVS N KAR+ILV++L++VQLSKPLLEA
Sbjct: 547 SLYEQAIAIEKGKEHSQVLPMLYAQYTRFLYLVSGNINKAREILVEALENVQLSKPLLEA 606
Query: 539 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLI 598
IH ESIQS PK+ID+L+ LVDKF+M NSDS S A+A +REELSC+FLEFLG+FGDAQ I
Sbjct: 607 FIHIESIQSLPKRIDYLDSLVDKFVMPNSDSLSAASATDREELSCIFLEFLGMFGDAQSI 666
Query: 599 KKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNP 658
KKA+DRHA+LFLPHRS SE +KRHA+D+L S+++K+AK+Y APSP QSLMGAYPS+QN
Sbjct: 667 KKADDRHAKLFLPHRSKSEFKKRHADDYLTSDKSKIAKAYGDAPSPVQSLMGAYPSTQNQ 726
Query: 659 WAAGYGVQPQTWPPATQAQAQQWN----QQAAYGAYSAYGSSYPTPQ--TSVPQNAAYGA 712
WAAGYGVQPQ WPPATQAQ QQW QQAAY Y +Y SSY TPQ TS Q A YGA
Sbjct: 727 WAAGYGVQPQAWPPATQAQMQQWTPGYGQQAAYSTYGSYASSYTTPQAPTSAAQTATYGA 786
Query: 713 YPPAYPAQ 720
YPP YPAQ
Sbjct: 787 YPPTYPAQ 794
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445628|ref|XP_004140574.1| PREDICTED: pre-mRNA-processing factor 39-like [Cucumis sativus] gi|449487353|ref|XP_004157584.1| PREDICTED: pre-mRNA-processing factor 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1052 bits (2720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/767 (67%), Positives = 608/767 (79%), Gaps = 34/767 (4%)
Query: 2 DPNAVMQ---------QAPGVGAPGSGDNVATSENEAMGSSQAAGYNS-MNGNVVNEAGN 51
DPN+V Q V N A SE AM ++ + G++S +NG++ E+ +
Sbjct: 67 DPNSVQQGNHVVEVDETKADVAVTDHSQNAAVSEISAMETAASVGHDSSVNGSIATESVH 126
Query: 52 ATSTENGTSLGIESGAAAGQELVDGSA--MSGEEDRLWNIVKANSSDFSAWTALLEETEK 109
A+S ENGT + + Q VDGS +S EEDRLWNIV+ANS DF++WT+L+EETEK
Sbjct: 127 ASSVENGTVVENANEGPEEQHFVDGSVPPLSAEEDRLWNIVRANSLDFNSWTSLIEETEK 186
Query: 110 LAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI 169
+A+DNI+KIRRVYDAFLAEFPLCYGYWKKYADHEAR GS DKVVEVYERAV GVTYSVDI
Sbjct: 187 VAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARFGSTDKVVEVYERAVHGVTYSVDI 246
Query: 170 WLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 229
WLHYCIF + TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW R+AMIYT
Sbjct: 247 WLHYCIFTLGTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWGRLAMIYT 306
Query: 230 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEV 289
RILENP QQLDRYF+SFKE AASRPLSEL+++EE AV SE G +V N EE
Sbjct: 307 RILENPNQQLDRYFNSFKELAASRPLSELKSSEE------AVVDVQSEAGDQV--NGEEG 358
Query: 290 QPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349
P+A E +SK VSAGLTEAEELEKYIA+REE+YKKAKEFDSKIIGFETAIRRPYFHV+PL
Sbjct: 359 HPEAAEPSSKTVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPL 418
Query: 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHN 409
+V EL+NWH+YLDFIE++GD NKVVKLYERC+IACANYPEYWIRY+LCM+AS SMDLA+N
Sbjct: 419 NVAELDNWHSYLDFIEQEGDLNKVVKLYERCVIACANYPEYWIRYILCMQASDSMDLANN 478
Query: 410 ALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 469
ALARA+ VFVKR PEIHLFAARFKEQNGDI GARA+YQLVH+E SPGLLEAIIKHANME
Sbjct: 479 ALARASQVFVKRRPEIHLFAARFKEQNGDIAGARASYQLVHSEISPGLLEAIIKHANMEH 538
Query: 470 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529
RLGNLEDA+S+YEQAIAIE+GKEHS+ L +LYAQYSRF +LV +N KAR+IL +++H
Sbjct: 539 RLGNLEDAYSVYEQAIAIERGKEHSRALSLLYAQYSRFQNLVCKNEGKAREILDKAVEHG 598
Query: 530 QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL 589
+LSKPL+EALIHFE+IQS+ K+ID+L+ LV+K ++ N+++ + +A+ REELS +FLEFL
Sbjct: 599 ELSKPLIEALIHFEAIQSTGKRIDYLDSLVEKVIVPNTENATVVSASMREELSSIFLEFL 658
Query: 590 GLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLM 649
LFGD Q IKKAEDRH +LF+ H+STSEL+KR A+D+LASE+AKMAK+Y SPAQSLM
Sbjct: 659 NLFGDVQSIKKAEDRHVKLFISHKSTSELKKRLADDYLASEKAKMAKTYPSVASPAQSLM 718
Query: 650 GAYPSSQNPWAAGYGVQPQTWPPATQAQAQQWN---QQAAYGAYSAYGSSYPTPQ--TSV 704
G YP+SQN WAA YGVQPQ WPP QAQ QQW Q+A +YS YGS+Y PQ TSV
Sbjct: 719 GVYPTSQNQWAASYGVQPQAWPPVAQAQGQQWAPGYTQSA--SYSGYGSTYTNPQVSTSV 776
Query: 705 PQNAAYGAYPPAYPAQVGSYFVGQYYQ-------VLQQQPDLVHQFY 744
Q + Y YPP YPAQ +Y Y Q QQP V Q Y
Sbjct: 777 SQASTYATYPPTYPAQQQAYSAQTYAQPTAQATVAPSQQPASVAQPY 823
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795953|emb|CAN60862.1| hypothetical protein VITISV_027789 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1051 bits (2719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/756 (71%), Positives = 601/756 (79%), Gaps = 76/756 (10%)
Query: 2 DPNAVMQQAPG-------VGAPGSGDNVATSENEAMGSSQAAGYNS-MNGNVVNEAGNAT 53
DPN VMQ+APG GA + N+A +E SQAAGY+S +NGN + EA N
Sbjct: 74 DPNTVMQEAPGSITYEASAGATETSSNLAAAE-----LSQAAGYDSSVNGNAITEARNFP 128
Query: 54 STENGTSLGIESGAAAGQELVDGS-----------------------AMSGEEDRLWNIV 90
S +NG + + GAA + +GS AMS EEDRLW+IV
Sbjct: 129 SVDNGNASDV-GGAAVESQFEEGSVVQILNVESLFFVLSLAVPFQVPAMSAEEDRLWSIV 187
Query: 91 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMD 150
+ANS DF+AWTAL+EETEK+A+DNI+KIRRVYDAFLAEFPLCYGYWKKYADHEAR+GS++
Sbjct: 188 RANSLDFNAWTALIEETEKIAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIE 247
Query: 151 KVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDK 210
KVVEVYERAVQGVTYSVDIWLHYCIFAI+TYGDP+TIRRLFERGLAYVGTDYLS+PLWDK
Sbjct: 248 KVVEVYERAVQGVTYSVDIWLHYCIFAISTYGDPDTIRRLFERGLAYVGTDYLSYPLWDK 307
Query: 211 YIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVA 270
+IEYEY QQEWSR+AMIYTRILENP QQLDRY +SFKE A SRPLSEL TAEE A A A
Sbjct: 308 FIEYEYSQQEWSRLAMIYTRILENPNQQLDRYLNSFKELAGSRPLSELTTAEEAAATAGA 367
Query: 271 VAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS 330
+ A + E E +PD EQ+SKPVSAGLT+AEELEKYIA+REEMYKKAK+FDS
Sbjct: 368 F------SDANGQGIEGEARPDEVEQSSKPVSAGLTDAEELEKYIAIREEMYKKAKDFDS 421
Query: 331 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY 390
KIIGFETAIRRPYFHV+PL+V ELENWHNYLDFIER DFNKVVKLYERCLIACANYPEY
Sbjct: 422 KIIGFETAIRRPYFHVRPLNVAELENWHNYLDFIERGDDFNKVVKLYERCLIACANYPEY 481
Query: 391 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 450
WIRYVLCMEASGSMDLA+NALARAT VFVKR PEIHLFAARF+EQ GDI G+RAAYQLVH
Sbjct: 482 WIRYVLCMEASGSMDLANNALARATQVFVKRQPEIHLFAARFREQKGDIPGSRAAYQLVH 541
Query: 451 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510
TE SPGLLEAIIKHANME RLGNLE AFSLYEQAIAIEKGKEHSQTLPML+AQYSRFL+L
Sbjct: 542 TEISPGLLEAIIKHANMEHRLGNLEXAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFLYL 601
Query: 511 VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570
V+ N EKAR+ILV++L+HVQLSKPLLEALIH ESIQS PK+ID L+ LVDKF+ +N +SP
Sbjct: 602 VTGNTEKAREILVEALEHVQLSKPLLEALIHLESIQSLPKRIDHLDSLVDKFIHTNPESP 661
Query: 571 STANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASE 630
+ A+AAEREELS +FLE++ + KRHAEDFLAS+
Sbjct: 662 NAASAAEREELSSIFLEYI---------------------------RVEKRHAEDFLASD 694
Query: 631 RAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQWN----QQAA 686
+AK+AKSYSG PSPAQSLMGAYPS+QN WA+GYG+QPQ WP ATQAQ QQWN QQAA
Sbjct: 695 KAKLAKSYSGVPSPAQSLMGAYPSAQNQWASGYGLQPQAWPQATQAQGQQWNPGYTQQAA 754
Query: 687 YGAYSAYGSSYPTPQ--TSVPQNAAYGAYPPAYPAQ 720
Y AYS YGSSY PQ TSVPQ AAYGAYPP YP Q
Sbjct: 755 YNAYSGYGSSYTHPQIPTSVPQTAAYGAYPPTYPVQ 790
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224070092|ref|XP_002303113.1| predicted protein [Populus trichocarpa] gi|222844839|gb|EEE82386.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/648 (76%), Positives = 554/648 (85%), Gaps = 12/648 (1%)
Query: 79 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKK 138
MS EED LW+IVKANS DF AWTAL++ETEK+A D I+KIR+VYDAFL EFPLCYGYWKK
Sbjct: 202 MSAEEDHLWSIVKANSLDFDAWTALIDETEKVAGDRILKIRKVYDAFLVEFPLCYGYWKK 261
Query: 139 YADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV 198
YADHEAR+G MDKVVEVYERAV GVTYSVDIWLHYC+FAI+TYGDPET+RRLFERGLAY
Sbjct: 262 YADHEARLGFMDKVVEVYERAVLGVTYSVDIWLHYCMFAISTYGDPETVRRLFERGLAYA 321
Query: 199 GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 258
GTDY+S+PLWDKYIEYE + EW RVAMIYTRILE P ++LD YF+ FK FAASRPLSEL
Sbjct: 322 GTDYMSYPLWDKYIEYEEVHAEWGRVAMIYTRILEIPNRKLDDYFNRFKAFAASRPLSEL 381
Query: 259 RTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 318
+TAEE A A ++ S+ A+E EV PDA EQ SKPV+AGLTEAEELEKYIA+R
Sbjct: 382 KTAEEAAAVAPVLSEDRSQ------ADEGEVHPDAAEQPSKPVNAGLTEAEELEKYIAIR 435
Query: 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 378
EE+YKKAKEFD+KI FE AIRRPYFHV+PL+V ELENWHNYLD IER+ DFNKVVKLYE
Sbjct: 436 EEIYKKAKEFDNKIFDFENAIRRPYFHVRPLNVAELENWHNYLDDIEREDDFNKVVKLYE 495
Query: 379 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 438
RC+IACANY EYWIRYVLCMEA+G+MDLA+NALARAT VFVKR PEIH+FAAR KEQNGD
Sbjct: 496 RCVIACANYTEYWIRYVLCMEATGNMDLANNALARATQVFVKRQPEIHIFAARLKEQNGD 555
Query: 439 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 498
+ GARAAYQ+VH E +PGLLEAIIKHANME RLGNLEDAFSLYEQAIAIEKGKEHSQ LP
Sbjct: 556 VSGARAAYQVVHAEIAPGLLEAIIKHANMEHRLGNLEDAFSLYEQAIAIEKGKEHSQVLP 615
Query: 499 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQL 558
LYAQY+RF++L S N EKAR+IL++ L++ Q SKPLLEALIHFE+ PK+ID+L+ L
Sbjct: 616 ALYAQYARFVYLASNNVEKAREILLEGLENAQYSKPLLEALIHFETFLPLPKRIDYLDSL 675
Query: 559 VDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSEL 618
VDKF++ +SDS + A+AAEREELSC+FLEFLG+FGDAQ IKKA DRHA+ FLPHRS SEL
Sbjct: 676 VDKFILPSSDSVNAASAAEREELSCIFLEFLGIFGDAQSIKKAADRHAKFFLPHRSKSEL 735
Query: 619 RKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQA 678
+KRHAED+LAS++AKMAK Y A SPAQSLMGAY S+QN W AGYGVQPQ WPPATQ Q
Sbjct: 736 KKRHAEDYLASDKAKMAKPYPDATSPAQSLMGAYASAQNQWTAGYGVQPQAWPPATQVQT 795
Query: 679 QQW----NQQAAYGAYSAYGSSYPTPQ--TSVPQNAAYGAYPPAYPAQ 720
QQW NQQAAYGAYS YG SYP PQ TSV Q AAYG YPP YPAQ
Sbjct: 796 QQWAPGYNQQAAYGAYSGYGGSYPNPQAPTSVAQGAAYGGYPPTYPAQ 843
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510169|ref|XP_003625373.1| Pre-mRNA-processing factor [Medicago truncatula] gi|355500388|gb|AES81591.1| Pre-mRNA-processing factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/756 (67%), Positives = 591/756 (78%), Gaps = 50/756 (6%)
Query: 2 DPNAVMQ------QAPGVGAPGSGDNVATSENEAMGSSQ-AAGYNSMNGNVVNEAGNATS 54
DPN+V+Q A ++ + EAM S+ +A ++S+NG+V +
Sbjct: 65 DPNSVLQAQFSATNESKQAAEVPNEDSSLVGKEAMDSAMVSADHSSVNGSV-----DTVG 119
Query: 55 TENGTSLGIESGAAAGQELVDG-SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQD 113
ENG + +A ++L D +A+S EEDRLWNIV ANSSDF+AWT+L++ETEK+A++
Sbjct: 120 LENGNASENVDESADEKQLTDAYAALSAEEDRLWNIVTANSSDFTAWTSLIDETEKVAEN 179
Query: 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 173
NI+K+RRVYDAFLAEFPLCYGYWKKYADHEAR+GS DKVVEVYERAVQGVTYSVD+WLHY
Sbjct: 180 NILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 239
Query: 174 CIFAINTYGDPETIRR------------------LFERGLAYVGTDYLSFPLWDKYIEYE 215
CIFAI+TYGDP+T+RR LFERGLAYVGTDYLSFPLWDKYIEYE
Sbjct: 240 CIFAISTYGDPDTVRRDRATVPSPFYGGKALMGLLFERGLAYVGTDYLSFPLWDKYIEYE 299
Query: 216 YMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 275
YMQQ+W+R+AMIYTRILENP QQLDRYF+SFKE A++RPLSELRTA+E A AVA
Sbjct: 300 YMQQDWARLAMIYTRILENPNQQLDRYFNSFKELASNRPLSELRTADE----AAAVAGVV 355
Query: 276 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 335
SE G + + E EV PD + + KP SAGLTEAEELEKYIA+REEMYKKAKEFDSKIIGF
Sbjct: 356 SE-GID-QGVEGEVHPDGADNSPKPASAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGF 413
Query: 336 ETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 395
ET IRRPYFHV+PL++ ELENWHNYLDFIER+GD +K+VKLYERC+IACANYPEYWIRYV
Sbjct: 414 ETTIRRPYFHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYV 473
Query: 396 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP 455
LCMEAS SMDLA+N LARA+ VFVKR PEIHLF ARFKEQ GDI GARAAYQLVHTE SP
Sbjct: 474 LCMEASESMDLANNVLARASQVFVKRQPEIHLFCARFKEQAGDIVGARAAYQLVHTEISP 533
Query: 456 GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515
GLLEAII+HANME RLG LEDAFSLYEQAIAIEKGKEHSQTLPML+AQYSRF++L S N+
Sbjct: 534 GLLEAIIRHANMEHRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNS 593
Query: 516 EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPSTA 573
EKAR+ILV L++ LSKPLLEAL+HFE+IQ PK+ IDFLE LV KF+ N ++P A
Sbjct: 594 EKAREILVGGLENASLSKPLLEALLHFEAIQPQPKRVDIDFLESLVVKFITPNPENPGVA 653
Query: 574 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAK 633
+A EREELS +FLEFL LFGD Q IK+AEDRHA+LFLP+R SEL+KRHAEDFLAS++ K
Sbjct: 654 SATEREELSNIFLEFLNLFGDVQSIKRAEDRHAKLFLPNRGLSELKKRHAEDFLASDKTK 713
Query: 634 MAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQW----NQQ----- 684
++++YS A SPAQS+ GAYP+ N W YGVQPQTWP TQAQ QQW QQ
Sbjct: 714 VSRAYS-AQSPAQSVAGAYPNGPNQW-PNYGVQPQTWPATTQAQGQQWPAGYTQQQAAAS 771
Query: 685 AAYGAYSAYGSSYPTPQTSVPQNAAYGAYPPAYPAQ 720
A + P SVPQ+ AYGAYPPAYPAQ
Sbjct: 772 YGAYAGYGGNYANPQLPASVPQSTAYGAYPPAYPAQ 807
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129528|ref|XP_002320608.1| predicted protein [Populus trichocarpa] gi|222861381|gb|EEE98923.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/644 (75%), Positives = 544/644 (84%), Gaps = 5/644 (0%)
Query: 79 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKK 138
MS EEDRLWNIVKANS DF AWTAL++ETEK+A D I+KIR+VYDAFL EFPLCYGYWKK
Sbjct: 1 MSAEEDRLWNIVKANSLDFDAWTALIDETEKVAGDKILKIRKVYDAFLGEFPLCYGYWKK 60
Query: 139 YADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV 198
YADHEAR+G MDK VEVYERAV GVTYSVDIWLHYC+ AI+ YGDPETIRRLFERGLAYV
Sbjct: 61 YADHEARLGFMDKFVEVYERAVLGVTYSVDIWLHYCMSAISMYGDPETIRRLFERGLAYV 120
Query: 199 GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 258
GTDYLS+PLWDKYIEYE + EW RVAMIYTRILE P ++LD YF+ FK FAASRPL+EL
Sbjct: 121 GTDYLSYPLWDKYIEYEEVHAEWGRVAMIYTRILEIPNRKLDDYFNRFKAFAASRPLAEL 180
Query: 259 RTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 318
RTAEE AAA A + G +A+E EV PDA E SKPVSAGL EAEELEKYIAVR
Sbjct: 181 RTAEEAAAAAAAARTLLEDGG---QADEGEVHPDAAELPSKPVSAGLGEAEELEKYIAVR 237
Query: 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 378
EE+YKKAKEFDSKI FE AIRRPYFHV+PL+V ELENWHNYLD IER+ DFNKVVKLYE
Sbjct: 238 EEIYKKAKEFDSKISDFENAIRRPYFHVRPLNVAELENWHNYLDMIEREDDFNKVVKLYE 297
Query: 379 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 438
RC+IACANY EYWIRYVLCMEA G+MDLA+NALARAT VFVKR PEIHLFAARFKEQNGD
Sbjct: 298 RCIIACANYTEYWIRYVLCMEAYGNMDLANNALARATQVFVKRQPEIHLFAARFKEQNGD 357
Query: 439 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 498
I GARAAY++VH E +PGLLEAI KHANME RLGNLEDAFSLYEQAIAIEKGKEHSQ LP
Sbjct: 358 IPGARAAYRVVHAEIAPGLLEAITKHANMEHRLGNLEDAFSLYEQAIAIEKGKEHSQVLP 417
Query: 499 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQL 558
LYAQY+RF++L S+N EKAR++LV++L++ Q SKPLLEALIH E+ PK+ID+++ L
Sbjct: 418 ALYAQYARFIYLASKNVEKAREVLVEALENAQFSKPLLEALIHLETFLPQPKRIDYIDSL 477
Query: 559 VDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSEL 618
VD F++++SDS + A+A+EREELSC+FLEFLG+FGDAQ IKKA DRHA+ FLPH S SEL
Sbjct: 478 VDNFILTSSDSVNAASASEREELSCIFLEFLGIFGDAQSIKKAADRHAKFFLPHSSKSEL 537
Query: 619 RKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQA 678
+KRHAED+L+S+R K+AK YS A SPAQSLMGAY S+QN W AGYG+QPQ WPPATQ QA
Sbjct: 538 KKRHAEDYLSSDREKIAKPYSDATSPAQSLMGAYASAQNQWTAGYGLQPQAWPPATQVQA 597
Query: 679 QQWNQQAAYGAYSAYGSSYPTPQ--TSVPQNAAYGAYPPAYPAQ 720
QQW AY YG SY +PQ TS Q AAYGAYPP YPAQ
Sbjct: 598 QQWTPGYNQAAYGGYGGSYTSPQVPTSGAQGAAYGAYPPTYPAQ 641
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843218|ref|XP_002889490.1| hypothetical protein ARALYDRAFT_333729 [Arabidopsis lyrata subsp. lyrata] gi|297335332|gb|EFH65749.1| hypothetical protein ARALYDRAFT_333729 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/693 (69%), Positives = 564/693 (81%), Gaps = 22/693 (3%)
Query: 41 MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAW 100
+NG V E GNAT T+ E G G S +S EE+RLWNIV+ANSS+F+AW
Sbjct: 50 VNGTVPVENGNATDNVAVTAPAAEHGDNPG------STLSPEEERLWNIVRANSSEFNAW 103
Query: 101 TALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAV 160
TAL++ETE++AQDNI KIR+VYDAFLAEFPLCYGYWKK+ADHEARVG+MDKVVEVYERAV
Sbjct: 104 TALIDETERIAQDNIAKIRKVYDAFLAEFPLCYGYWKKFADHEARVGAMDKVVEVYERAV 163
Query: 161 QGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE 220
QGVTYSVDIWLHYC FAINTYGDP+TIRRLFER L YVGTD+LS PLWDKYIEYEYMQQ+
Sbjct: 164 QGVTYSVDIWLHYCTFAINTYGDPDTIRRLFERALVYVGTDFLSSPLWDKYIEYEYMQQD 223
Query: 221 WSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV---AVAAAPSE 277
WSRVAMIYTRILENPIQ LDRYFSS KE A +RPLSELR+AEE AA V A +APSE
Sbjct: 224 WSRVAMIYTRILENPIQNLDRYFSSLKELAETRPLSELRSAEESAAAVVAGDASESAPSE 283
Query: 278 TGAEVKANEEEVQPD-ATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 336
G KA+E Q D +TEQ+ K SA T+ EEL+KY+ +RE MY K+KEF+SKIIG+E
Sbjct: 284 PGG--KADEGRSQVDGSTEQSPKLESASSTDPEELKKYVGIREAMYIKSKEFESKIIGYE 341
Query: 337 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 396
AIRRPYFHV+PL+V ELENWHNYLDF ERDGDFNKVVKLYERC++ACANYP YWIRYV
Sbjct: 342 MAIRRPYFHVRPLNVAELENWHNYLDFTERDGDFNKVVKLYERCVVACANYPGYWIRYVS 401
Query: 397 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG 456
M ASGS DLA NALARAT VFVK+ PEIHLFAAR KE+NGDI GARAAYQLVH+E SPG
Sbjct: 402 KMRASGSTDLAENALARATQVFVKKQPEIHLFAARLKEKNGDIAGARAAYQLVHSEISPG 461
Query: 457 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 516
LLEA+IKHANME RLGNL+DAFSLYEQ IA+EKGKEHS LP+LYAQYSRF +LVSR+ E
Sbjct: 462 LLEAVIKHANMEHRLGNLDDAFSLYEQVIAVEKGKEHSTILPLLYAQYSRFSYLVSRDTE 521
Query: 517 KARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAA 576
KAR+I+V++LDHVQ SKPL+E+LIHFE+IQ P+QID+LE LV+K + ++D+ + A+A+
Sbjct: 522 KARRIIVEALDHVQPSKPLVESLIHFETIQPPPRQIDYLEPLVEKVIKPDADAQNIASAS 581
Query: 577 EREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAK 636
EREELS +++EFLG+FGD + I KAE++H LFLPHRSTS+L+KR A+DFL+S+R KMAK
Sbjct: 582 EREELSLIYIEFLGIFGDVEAIHKAEEQHVTLFLPHRSTSDLKKRSADDFLSSDRTKMAK 641
Query: 637 SYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPP--ATQAQAQQWN----QQAAYGAY 690
+Y+G P PAQ + AYP++Q W+ GY QPQTWPP A AQ QQWN QQAAYGAY
Sbjct: 642 TYNGTP-PAQPVSNAYPNTQAQWSGGYAAQPQTWPPTQAAPAQPQQWNPAYGQQAAYGAY 700
Query: 691 SAYGSSYPTPQ--TSVPQNAAYGAYPP-AYPAQ 720
Y + Y PQ T VPQ AAYGAYP YP Q
Sbjct: 701 GGYPAGYTAPQAPTPVPQAAAYGAYPAQTYPTQ 733
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1167 | ||||||
| TAIR|locus:2170453 | 1036 | PRP39-2 [Arabidopsis thaliana | 0.479 | 0.539 | 0.413 | 1.6e-115 | |
| TAIR|locus:2172472 | 450 | AT5G43960 [Arabidopsis thalian | 0.152 | 0.395 | 0.674 | 3.4e-106 | |
| UNIPROTKB|F1PV57 | 667 | PRPF39 "Uncharacterized protei | 0.542 | 0.949 | 0.291 | 3.1e-72 | |
| UNIPROTKB|F1SI15 | 667 | PRPF39 "Uncharacterized protei | 0.542 | 0.949 | 0.288 | 7e-72 | |
| ZFIN|ZDB-GENE-030616-420 | 752 | prpf39 "PRP39 pre-mRNA process | 0.469 | 0.728 | 0.335 | 3.6e-71 | |
| UNIPROTKB|E1C8G8 | 628 | PRPF39 "Uncharacterized protei | 0.465 | 0.864 | 0.320 | 6.1e-71 | |
| RGD|1308702 | 664 | Prpf39 "PRP39 pre-mRNA process | 0.473 | 0.831 | 0.317 | 2.3e-70 | |
| UNIPROTKB|Q86UA1 | 669 | PRPF39 "Pre-mRNA-processing fa | 0.487 | 0.850 | 0.306 | 6.7e-70 | |
| MGI|MGI:104602 | 665 | Prpf39 "PRP39 pre-mRNA process | 0.526 | 0.924 | 0.294 | 5.7e-68 | |
| POMBASE|SPBC4B4.09 | 612 | usp105 "U1 snRNP-associated pr | 0.368 | 0.702 | 0.326 | 4.3e-62 |
| TAIR|locus:2170453 PRP39-2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1120 (399.3 bits), Expect = 1.6e-115, Sum P(2) = 1.6e-115
Identities = 235/568 (41%), Positives = 338/568 (59%)
Query: 54 STENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA-Q 112
+TE T++ + EL D S + DRL + + DF WT L+ E E +
Sbjct: 3 TTEVRTAVSDKEPLQRSPEL-DSSTDFLDNDRLKETFSSGALDFDEWTLLISEIETTSFP 61
Query: 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 172
D+I K+ VYDAFL EFPLC+GYW+KYA H+ ++ +++ VEV+ERAVQ TYSV +WL
Sbjct: 62 DDIEKLCLVYDAFLLEFPLCHGYWRKYAYHKIKLCTLEDAVEVFERAVQAATYSVAVWLD 121
Query: 173 YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232
YC FA+ Y DP + RLFERGL+++G DY LWDKYIEY QQ+WS +A +Y R L
Sbjct: 122 YCAFAVAAYEDPHDVSRLFERGLSFIGKDYSCCTLWDKYIEYLLGQQQWSSLANVYLRTL 181
Query: 233 ENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPD 292
+ P ++LD Y+ +F++ AAS L E + E + +EE+
Sbjct: 182 KYPSKKLDLYYKNFRKIAAS--LKE-KIKCRIDVNGDLSSDPMEEDLVHTRHTDEEISIV 238
Query: 293 ATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT 352
E S+ +++A L Y+++ E+ Y+ +++ KI FET IRRPYFHVKPL
Sbjct: 239 VRELMGPSSSSAVSKA--LHTYLSIGEQFYQDSRQLMEKISCFETQIRRPYFHVKPLDTN 296
Query: 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALA 412
+L+NWH YL F E GDF+ + LYERCLI CANY E+W RYV +E+ G +LA+ ALA
Sbjct: 297 QLDNWHAYLSFGETYGDFDWAINLYERCLIPCANYTEFWFRYVDFVESKGGRELANFALA 356
Query: 413 RATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 472
RA+ FVK IHLF ARFKE GD A A E G +E + K ANME+RLG
Sbjct: 357 RASQTFVKSASVIHLFNARFKEHVGDASAASVALSRCGEELGFGFVENVTKKANMEKRLG 416
Query: 473 NLEDAFSLYEQAIAIEK-GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531
N E A + Y +A+ GKE+ +T LY Q+SR ++++ +A+ A QIL++ ++V
Sbjct: 417 NFEAAVTTYREALNKTLIGKENLETTARLYVQFSRLKYVITNSADDAAQILLEGNENVPH 476
Query: 532 SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 591
K LLE L+ + +Q+D L+ ++DK L +DS +A ++EE+S +++EF+ L
Sbjct: 477 CKLLLEELMRLLMMHGGSRQVDLLDPIIDKELSHQADSSDGLSAEDKEEISNLYMEFIDL 536
Query: 592 FGDAQLIKKAEDRHARLFLPHRSTSELR 619
G ++KA RH +LF PH + ++LR
Sbjct: 537 SGTIHDVRKALGRHIKLF-PHSARAKLR 563
|
|
| TAIR|locus:2172472 AT5G43960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 3.4e-106, Sum P(2) = 3.4e-106
Identities = 122/181 (67%), Positives = 145/181 (80%)
Query: 720 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 779
QVGSYFVGQYYQVLQQQPDL+HQFYS+ S IR+DGDSTE+A+S+L IH++V+SLNFTAI
Sbjct: 10 QVGSYFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLLHIHNMVMSLNFTAI 69
Query: 780 EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEE 839
E+KTINS+ SW GGVLV+VSGSVKTKEF RR FVQTFFLAPQEKGYFVL+D+F F+DE
Sbjct: 70 EVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLSDVFLFVDEG 129
Query: 840 PVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSVHIEDDATDNYS 899
VY H LSE K + Q + + P+ SDYVLEEEA +YV++V I+DD D YS
Sbjct: 130 TVYYHQPSYLSEIKHEAQLNPPTRHPDPQ---VSDYVLEEEASDYVNAVQIKDDLVDKYS 186
Query: 900 L 900
L
Sbjct: 187 L 187
|
|
| UNIPROTKB|F1PV57 PRPF39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 3.1e-72, P = 3.1e-72
Identities = 193/661 (29%), Positives = 314/661 (47%)
Query: 18 SGDNVATSENEAMGSSQAAGYNS--MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVD 75
+ N +T + + Q+A +++ MN + ++ + + N T+ E A + +
Sbjct: 11 NSSNGSTGNSSEVVVEQSADFSTEIMNVTEMEQSPDGSPNVNATTEENEIANAVDLPVTE 70
Query: 76 GSA-MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG 134
A E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYG
Sbjct: 71 TEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFIHYPYCYG 128
Query: 135 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRR 189
YWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GDPET IR
Sbjct: 129 YWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRG 188
Query: 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 249
FE + GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE
Sbjct: 189 TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEH 248
Query: 250 AASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309
+ +L T +G + ++ P E + P +TE E
Sbjct: 249 VQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIE 305
Query: 310 ELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG 368
+ + I + +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G
Sbjct: 306 NMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENG 365
Query: 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428
+VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+
Sbjct: 366 THERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHML 424
Query: 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488
A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 425 WAAFEEQQGNINEARNILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNA 483
Query: 489 KGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 547
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 484 KSNNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGD 539
Query: 548 SPKQIDFLEQLVDKFLMSNSDSPSTANAAER-----EELSCVFLEFLGLFGDAQLIKKAE 602
+ + + DK + + ++R E+ + L + + Q + K +
Sbjct: 540 LKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQ 599
Query: 603 DRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS-QNPWAA 661
D R E +K H ED +S +M A A + Y + QNPW
Sbjct: 600 DSLKRKAENGSEEPEEKKAHTED-TSSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNY 658
Query: 662 G 662
G
Sbjct: 659 G 659
|
|
| UNIPROTKB|F1SI15 PRPF39 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 7.0e-72, P = 7.0e-72
Identities = 191/661 (28%), Positives = 314/661 (47%)
Query: 18 SGDNVATSENEAMGSSQAAGYNS--MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVD 75
+ +N +T + + Q+A +++ MN + ++ + + T T+ E+ + +
Sbjct: 11 NSNNGSTGNSSEVVIEQSADFSTEIMNVTEMEQSPDGSPTVTTTTEENETANTVDLPVTE 70
Query: 76 GSA-MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG 134
A E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYG
Sbjct: 71 TEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFIHYPYCYG 128
Query: 135 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRR 189
YWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GDPET I+
Sbjct: 129 YWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETTSTIKG 188
Query: 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 249
FE + GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE
Sbjct: 189 TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEH 248
Query: 250 AASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309
+ +L T +G + ++ P E + P +TE E
Sbjct: 249 VQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKKLITEIE 306
Query: 310 ELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG 368
+ + I + +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G
Sbjct: 307 NMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENG 366
Query: 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428
+VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+
Sbjct: 367 THERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHML 425
Query: 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488
A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 426 WAAFEEQQGNINEARNILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAERLLQDAIKNA 484
Query: 489 KGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 547
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 485 KANNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGD 540
Query: 548 SPKQIDFLEQLVDKFLMSNSDSPSTANAAER-----EELSCVFLEFLGLFGDAQLIKKAE 602
+ + + DK + + ++R E+ + L + + Q + K +
Sbjct: 541 LKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQ 600
Query: 603 DRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS-QNPWAA 661
D R E +K H ED S +M A A + Y + QNPW
Sbjct: 601 DSLKRKAENGSEEPEEKKAHTED--TSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNY 658
Query: 662 G 662
G
Sbjct: 659 G 659
|
|
| ZFIN|ZDB-GENE-030616-420 prpf39 "PRP39 pre-mRNA processing factor 39 homolog (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 722 (259.2 bits), Expect = 3.6e-71, P = 3.6e-71
Identities = 197/587 (33%), Positives = 299/587 (50%)
Query: 64 ESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYD 123
E+ AA QE + E +RL +V+ N DF+ W LL+ E+ +++++ R+ +D
Sbjct: 137 EADPAAPQE----PELPTEYERLSKVVEDNPEDFNGWVYLLQYVEQ--ENHLLGSRKAFD 190
Query: 124 AFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY-- 181
AF +P CYGYWKKYAD E + G + EVY R +Q + SVD+WLHY F
Sbjct: 191 AFFLHYPYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDT 250
Query: 182 --GDPET-IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 238
G+ E+ IR +E + GTD+ S LW+ YI +E Q + + V IY R+L P Q
Sbjct: 251 SDGEAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLCIPTQL 310
Query: 239 LDRYFSSFKEFAASR-PLSEL-RTXXXXXXXXXXXXXXPS-ETGAEVKANEEEVQPDATE 295
++F FK+ S P L PS + AE +A EE+ P TE
Sbjct: 311 YSQHFQKFKDHVQSNNPKHFLSEEEFVSLRVELANANKPSGDEDAETEAPGEELPP-GTE 369
Query: 296 QTSKPVSAGLTEAEELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL 354
P +TE E + K I R+EM+ + SK FE I+RPYFHVK L T+L
Sbjct: 370 DLPDPAKR-VTEIENMRHKVIETRQEMFNHNEHEVSKRWAFEEGIKRPYFHVKALEKTQL 428
Query: 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414
NW YLDF +G +VV L+ERCLIACA Y E+WI+Y +E S S + + +A
Sbjct: 429 NNWREYLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLE-SYSTEAVRHIYKKA 487
Query: 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 474
V + + P +HL A F+EQ G ID AR+ + V PGL ++ ++ERR GN+
Sbjct: 488 CTVHLPKKPNVHLLWAAFEEQQGSIDEARSILKAVEVSV-PGLAMVRLRRVSLERRHGNM 546
Query: 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533
E+A +L + AI G+ S++ Y+ + +R L V ++ +A+++L+++++ + +
Sbjct: 547 EEAEALLQDAIT--NGRNSSES--SFYSVKLARQLVKVQKSIGRAKKVLLEAVEKDETNP 602
Query: 534 PLLEALIHFESIQSSPKQIDFLEQLV--DKFLMSNSDSPSTANAAEREELSCVFLEFLGL 591
L L+ E S Q + E + D+ L S+ S ++R+ ++FL
Sbjct: 603 KLYLNLLELE--YSGDVQQNEAEIIACFDRALSSSMALESRITFSQRK------VDFLED 654
Query: 592 FG-DAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKS 637
FG D + A ++H RL S KR AE+ AK ++
Sbjct: 655 FGSDINTLMAAYEQHQRLLAEQESF----KRKAENGSEEPDAKRQRT 697
|
|
| UNIPROTKB|E1C8G8 PRPF39 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 184/574 (32%), Positives = 284/574 (49%)
Query: 84 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 143
D+ W +V+ N DF+ W LL+ E+ ++++ R+ +D F +P CYGYWKKYAD E
Sbjct: 42 DKFWKVVEDNPQDFTGWVYLLQYVEQ--ENHLPAARKAFDKFFTHYPYCYGYWKKYADLE 99
Query: 144 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG--DPE---TIRRLFERGLAYV 198
R ++ + EVY R +Q + SVD+W+HY F +T DPE TIR +E +
Sbjct: 100 RRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKDTLDPDDPEANSTIRGAYEHAVLAA 159
Query: 199 GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 258
GTD+ S LW+ YI +E Q V IY RIL P Q +F FK+ + +L
Sbjct: 160 GTDFRSDRLWEMYINWEDEQGNLREVTSIYDRILGIPTQLYSHHFQRFKDHVQNNLPRDL 219
Query: 259 RTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYIAV 317
T G + A ++ P TE + P +TE E + + I +
Sbjct: 220 LTSEQFIQLRRELASVNGHAGGDASAGDD--LPSGTEDITDPAKL-ITEIENMRHRIIEI 276
Query: 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 377
+EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV L+
Sbjct: 277 HQEMFNHNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLF 336
Query: 378 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 437
ERC+I+CA Y ++WI+Y ME + S++ + +RA + + + P +H+ A F+EQ G
Sbjct: 337 ERCVISCALYEDFWIKYAKYME-NHSIEGVRHVYSRACTIHLPKKPMVHMLWAAFEEQQG 395
Query: 438 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 497
+ID AR + E GL ++ ++ERR GN+E+A L E+A+ K S
Sbjct: 396 NIDEARRILKTFE-ECILGLAMVRLRRVSLERRHGNMEEAERLLEEAVRNAKSVSESS-- 452
Query: 498 PMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLE 556
YA + +R L V +N KAR++L D+++ + + L L+ E + + +
Sbjct: 453 --FYAIKLARHLFKVQKNLPKARKVLSDAIEIDKENTKLYLNLLEMEYCGDLTQNEENIL 510
Query: 557 QLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHRST 615
DK + + ++R+ +EFL FG D + A D H L L + T
Sbjct: 511 SCFDKAVNGSLSIKMRVTFSQRK------VEFLEDFGSDVNKLLDAYDEHQAL-LKEQDT 563
Query: 616 SELRKRHAEDFLASERAKMAKSYSGAPSPAQSLM 649
KR AE+ SE K + + A + M
Sbjct: 564 L---KRRAEN--GSEEPDEKKMLTDEQTMASAQM 592
|
|
| RGD|1308702 Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 2.3e-70, P = 2.3e-70
Identities = 185/583 (31%), Positives = 289/583 (49%)
Query: 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 141
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 77 EFEKFWKTVETNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFIHYPYCYGYWKKYAD 134
Query: 142 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLA 196
E R ++ + EVY R +Q + SVD+W+HY F T GDPET IR FE +
Sbjct: 135 LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVL 194
Query: 197 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256
GTD+ S LW+ YI +E Q V +Y RIL P Q +F FKE +
Sbjct: 195 AAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRFKEHVQNNLPR 254
Query: 257 ELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYI 315
+L T G + ++ P E + P +TE E + + I
Sbjct: 255 DLLTGEQFIQLRRELASVNGHNGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRII 311
Query: 316 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK 375
+ +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV
Sbjct: 312 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVV 371
Query: 376 LYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 435
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P H+ A F+EQ
Sbjct: 372 LFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQ 430
Query: 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 495
G+I+ AR + E GL ++ ++ERR GN+E+A L + AI K S
Sbjct: 431 QGNINEARIILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIRNAKSNNESS 489
Query: 496 TLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 554
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 490 ----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSCDLKQNEEN 545
Query: 555 LEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHR 613
+ DK + + ++R+ +EFL FG D + A D H L L +
Sbjct: 546 ILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQTL-LKEQ 598
Query: 614 STSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQ 656
T KR AE+ SE + K+++ S AQ + G ++Q
Sbjct: 599 DTL---KRKAEN--GSEEPEEKKAHTEDVSSAQIIDGDLQANQ 636
|
|
| UNIPROTKB|Q86UA1 PRPF39 "Pre-mRNA-processing factor 39" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 6.7e-70, P = 6.7e-70
Identities = 182/594 (30%), Positives = 285/594 (47%)
Query: 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 141
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 80 EYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDRFFIHYPYCYGYWKKYAD 137
Query: 142 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLA 196
E R ++ EVY R +Q + SVD+W+HY F T GDPET IR FE +
Sbjct: 138 LEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVL 197
Query: 197 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256
GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE +
Sbjct: 198 AAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPR 257
Query: 257 ELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYI 315
+L T +G + ++ P E + P +TE E + + I
Sbjct: 258 DLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRII 314
Query: 316 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK 375
+ +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV
Sbjct: 315 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVV 374
Query: 376 LYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 435
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+ A F+EQ
Sbjct: 375 LFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQ 433
Query: 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 495
G+I+ AR + E GL ++ ++ERR GNLE+A L + AI K S
Sbjct: 434 QGNINEARNILKTFE-ECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESS 492
Query: 496 TLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 554
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 493 ----FYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEEN 548
Query: 555 LEQLVDKFLMSNSDSPSTANAAER-----EELSCVFLEFLGLFGDAQLIKKAEDRHARLF 609
+ DK + + ++R E+ + L + + Q + K +D R
Sbjct: 549 ILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKA 608
Query: 610 LPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS-QNPWAAG 662
E +K H ED +S +M A + Y + QNPW G
Sbjct: 609 ENGSEEPEEKKAHTEDTTSSS-TQMIDGDLQANQAVYNYSAWYQYNYQNPWNYG 661
|
|
| MGI|MGI:104602 Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 5.7e-68, P = 5.7e-68
Identities = 192/651 (29%), Positives = 315/651 (48%)
Query: 18 SGDNVATSENEAMGSSQAAGYNS--MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVD 75
+ DN +T + + + +++ MN + ++ +A+ + + ++ E A + +
Sbjct: 11 NSDNGSTGNSSEVAVVEHPDFSTEIMNVTEMEQSPDASPSAHASTEENEMANAVNLPVTE 70
Query: 76 GSA-MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG 134
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYG
Sbjct: 71 AEGDFPPEFEKFWKTVEMNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFVHYPYCYG 128
Query: 135 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRR 189
YWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GD ET IR
Sbjct: 129 YWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRG 188
Query: 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 249
FE + GTD+ S LW+ YI +E Q V +Y RIL P Q +F FKE
Sbjct: 189 TFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRFKEH 248
Query: 250 AASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309
+ +L T +G + ++ P E S P +TE E
Sbjct: 249 VQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDIS-PAKL-ITEIE 304
Query: 310 ELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERD 367
+ + I + +EM+ + SK FE I+RPYFHVKPL + +NW YL+F +
Sbjct: 305 NMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKKNWKEYLEFEIEN 364
Query: 368 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 427
G +VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P H+
Sbjct: 365 GTHERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPMAHM 423
Query: 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 487
A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 424 LWAAFEEQQGNINEARIILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKN 482
Query: 488 EKGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 546
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 483 AKSNNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSC 538
Query: 547 SSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRH 605
+ + + DK + + ++R+ +EFL FG D + A D H
Sbjct: 539 DLKQNEENILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEH 592
Query: 606 ARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQ 656
L L + T KR AE+ SE + K+++ S AQ + G ++Q
Sbjct: 593 QTL-LKEQDTL---KRKAEN--GSEEPEEKKAHTEDLSSAQIIDGDLQANQ 637
|
|
| POMBASE|SPBC4B4.09 usp105 "U1 snRNP-associated protein Usp105" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 4.3e-62, P = 4.3e-62
Identities = 149/457 (32%), Positives = 232/457 (50%)
Query: 82 EEDRLWNIVKANSSDFSAWTALLEETEKL--------AQDNIVKIRRVYDAFLAEFPLCY 133
E D+ + N DF AW L+ +E L ++ I +R VYD FL ++PL +
Sbjct: 13 EWDKYNRQINKNPDDFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLF 72
Query: 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 193
GYWKKYAD E V + +YER + G+ +SVD+W +YC F + T GD +R LF +
Sbjct: 73 GYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQ 132
Query: 194 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 253
G VG D+LS P WDKY+E+E Q+ V + R++ P+ Q RYF F + + S+
Sbjct: 133 GANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQ 192
Query: 254 PLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313
P+ +L P++ V A +++ + E E E +
Sbjct: 193 PIQQLLPPDVLASIRADVTREPAKV---VSAGSKQITVERGELE--------IEREMRAR 241
Query: 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 373
+ ++++K + +K FE+ I+RPYFHVK L +L NW YLDF E +GDF ++
Sbjct: 242 IYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDFQRI 301
Query: 374 VKLYERCLIACANYPEYWIRYVLCMEASGS-MDLAHNALARATHVFVK-RLPEIHLFAAR 431
LYERCLI CA Y E+W RY M A ++ RA+ +F P I + A
Sbjct: 302 CHLYERCLITCALYDEFWFRYARWMSAQPDHLNDVSIIYERASCIFASISRPGIRVQYAL 361
Query: 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQAIAIE 488
F+E G+I A+A YQ + T+ PG LEA++ +ERR +L +A ++ I
Sbjct: 362 FEESQGNIASAKAIYQSILTQL-PGNLEAVLGWVGLERRNAPNYDLTNAHAVLRSII--N 418
Query: 489 KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525
+GK ++ +L + + + + + E AR + + +
Sbjct: 419 EGKCNTGITEVLITEDIKLVWKIEGDIELARNMFLQN 455
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.3.3.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 5.3.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1167 | |||
| cd00780 | 119 | cd00780, NTF2, Nuclear transport factor 2 (NTF2) d | 6e-34 | |
| pfam02136 | 116 | pfam02136, NTF2, Nuclear transport factor 2 (NTF2) | 6e-24 | |
| smart00360 | 73 | smart00360, RRM, RNA recognition motif | 5e-12 | |
| cd00590 | 72 | cd00590, RRM_SF, RNA recognition motif (RRM) super | 3e-11 | |
| COG5107 | 660 | COG5107, RNA14, Pre-mRNA 3'-end processing (cleava | 1e-10 | |
| cd12298 | 78 | cd12298, RRM3_Prp24, RNA recognition motif 3 in fu | 6e-10 | |
| cd00531 | 124 | cd00531, NTF2_like, Nuclear transport factor 2 (NT | 2e-09 | |
| pfam14259 | 69 | pfam14259, RRM_6, RNA recognition motif (a | 9e-09 | |
| cd12415 | 82 | cd12415, RRM3_RBM28_like, RNA recognition motif 3 | 3e-08 | |
| pfam00076 | 70 | pfam00076, RRM_1, RNA recognition motif | 5e-08 | |
| cd12260 | 85 | cd12260, RRM2_SREK1, RNA recognition motif 2 in sp | 1e-07 | |
| cd12395 | 73 | cd12395, RRM2_RBM34, RNA recognition motif 2 in RN | 3e-07 | |
| cd12254 | 73 | cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognit | 3e-07 | |
| cd12689 | 80 | cd12689, RRM1_hnRNPL_like, RNA recognition motif 1 | 5e-07 | |
| cd12450 | 77 | cd12450, RRM1_NUCLs, RNA recognition motif 1 found | 6e-07 | |
| cd12251 | 72 | cd12251, RRM3_hnRNPR_like, RNA recognition motif 3 | 1e-06 | |
| cd12306 | 73 | cd12306, RRM_II_PABPs, RNA recognition motif in ty | 1e-06 | |
| cd12338 | 72 | cd12338, RRM1_SRSF1_like, RNA recognition motif 1 | 2e-05 | |
| cd12279 | 74 | cd12279, RRM_TUT1, RNA recognition motif in speckl | 2e-05 | |
| cd12412 | 80 | cd12412, RRM_DAZL_BOULE, RNA recognition motif in | 2e-05 | |
| TIGR01649 | 481 | TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus spl | 2e-05 | |
| cd12391 | 72 | cd12391, RRM1_SART3, RNA recognition motif 1 in sq | 3e-05 | |
| COG0724 | 306 | COG0724, COG0724, RNA-binding proteins (RRM domain | 3e-05 | |
| cd12421 | 74 | cd12421, RRM1_PTBP1_hnRNPL_like, RNA recognition m | 5e-05 | |
| cd12453 | 86 | cd12453, RRM1_RIM4_like, RNA recognition motif 1 i | 6e-05 | |
| cd12417 | 74 | cd12417, RRM_SAFB_like, RNA recognition motif in t | 6e-05 | |
| cd12373 | 73 | cd12373, RRM_SRSF3_like, RNA recognition motif in | 7e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-04 | |
| cd12229 | 81 | cd12229, RRM_G3BP, RNA recognition motif (RRM) in | 1e-04 | |
| cd12384 | 76 | cd12384, RRM_RBM24_RBM38_like, RNA recognition mot | 2e-04 | |
| smart00386 | 33 | smart00386, HAT, HAT (Half-A-TPR) repeats | 2e-04 | |
| cd12312 | 84 | cd12312, RRM_SRSF10_SRSF12, RNA recognition motif | 2e-04 | |
| cd12598 | 72 | cd12598, RRM1_SRSF9, RNA recognition motif 1 in ve | 3e-04 | |
| cd12352 | 72 | cd12352, RRM1_TIA1_like, RNA recognition motif 1 i | 3e-04 | |
| cd12597 | 73 | cd12597, RRM1_SRSF1, RNA recognition motif 1 in se | 4e-04 | |
| cd12356 | 79 | cd12356, RRM_PPARGC1B, RNA recognition motif in pe | 4e-04 | |
| cd12320 | 76 | cd12320, RRM6_RBM19_RRM5_MRD1, RNA recognition mot | 4e-04 | |
| smart00386 | 33 | smart00386, HAT, HAT (Half-A-TPR) repeats | 5e-04 | |
| pfam05843 | 271 | pfam05843, Suf, Suppressor of forked protein (Suf) | 5e-04 | |
| cd12231 | 77 | cd12231, RRM2_U2AF65, RNA recognition motif 2 foun | 5e-04 | |
| smart00386 | 33 | smart00386, HAT, HAT (Half-A-TPR) repeats | 7e-04 | |
| cd12242 | 73 | cd12242, RRM_SLIRP, RNA recognition motif found in | 9e-04 | |
| cd12752 | 87 | cd12752, RRM1_RBM5, RNA recognition motif 1 in ver | 0.001 | |
| cd12237 | 93 | cd12237, RRM_snRNP35, RNA recognition motif found | 0.001 | |
| cd12350 | 74 | cd12350, RRM3_SHARP, RNA recognition motif 3 in SM | 0.001 | |
| cd12494 | 72 | cd12494, RRM3_hnRNPR, RNA recognition motif 3 in v | 0.001 | |
| cd12399 | 78 | cd12399, RRM_HP0827_like, RNA recognition motif in | 0.001 | |
| cd12348 | 75 | cd12348, RRM1_SHARP, RNA recognition motif 1 in SM | 0.001 | |
| cd12379 | 77 | cd12379, RRM2_I_PABPs, RNA recognition motif 2 fou | 0.001 | |
| cd12241 | 77 | cd12241, RRM_SF3B14, RNA recognition motif found i | 0.001 | |
| cd12291 | 72 | cd12291, RRM1_La, RNA recognition motif 1 in La au | 0.001 | |
| cd12413 | 79 | cd12413, RRM1_RBM28_like, RNA recognition motif 1 | 0.002 | |
| cd12614 | 74 | cd12614, RRM1_PUB1, RNA recognition motif 1 in yea | 0.002 | |
| cd12523 | 78 | cd12523, RRM2_MRN1, RNA recognition motif 2 of RNA | 0.002 | |
| cd12495 | 72 | cd12495, RRM3_hnRNPQ, RNA recognition motif 3 in v | 0.002 | |
| cd12599 | 72 | cd12599, RRM1_SF2_plant_like, RNA recognition moti | 0.002 | |
| cd12343 | 66 | cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 | 0.003 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 | |
| cd12355 | 80 | cd12355, RRM_RBM18, RNA recognition motif in eukar | 0.004 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 0.004 | |
| cd12290 | 80 | cd12290, RRM1_LARP7, RNA recognition motif 1 in La | 0.004 |
| >gnl|CDD|238403 cd00780, NTF2, Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 6e-34
Identities = 50/122 (40%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNF- 776
V FV QYY + + +H+ Y D S + R + I + SL F
Sbjct: 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMKQ---VTGRDAIVEKLSSLPFQ 58
Query: 777 -TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 835
T +I T++S + +GGV+VMV+GS+K E RKF QTF LAPQ GYFVLNDIF F
Sbjct: 59 KTKHKITTVDSQPTPSGGVIVMVTGSLKLDEQ-PPRKFSQTFVLAPQNGGYFVLNDIFRF 117
Query: 836 LD 837
+D
Sbjct: 118 VD 119
|
This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. Length = 119 |
| >gnl|CDD|216894 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 6e-24
Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 721 VGSYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 779
V FV +YY L P+ + Y D +S+ G S + I+ SL FT I
Sbjct: 1 VALAFVQRYYAALDAGDPEGLAALYYDDASVEDPPGQSP--VTGREAINEFFDSLPFTRI 58
Query: 780 EIKTINSLGSW----NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 835
+ I S+ + + GVLVMV+G + +F RR+F QTF L PQ GYFVLNDIF +
Sbjct: 59 Q-HLITSVDAQPASHSDGVLVMVTGELTVDDF-PRRRFSQTFLLTPQRGGYFVLNDIFRY 116
|
This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins. Length = 116 |
| >gnl|CDD|214636 smart00360, RRM, RNA recognition motif | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 5e-12
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+++V NLP T E+ E F FG+++ VR+++ +AFVEFE + A++
Sbjct: 1 TLFVGNLPPDTTEEELRELFSKFGKVE-SVRLVRDKETGKSKGFAFVEFESEEDAEKALE 59
Query: 1093 A-SPIQLAGRQVYI 1105
A + +L GR + +
Sbjct: 60 ALNGKELDGRPLKV 73
|
Length = 73 |
| >gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-11
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V NLP T ++ E F FG I+ V + KD +AFVEFE + A++A
Sbjct: 1 LFVGNLPPDTTEEDLRELFSKFGEIE--SVRIVRDKDGKSKGFAFVEFESPEDAEKALEA 58
Query: 1094 SP-IQLAGRQVYIE 1106
+L GR++ +
Sbjct: 59 LNGKELDGRKLKVS 72
|
RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72 |
| >gnl|CDD|227438 COG5107, RNA14, Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 1e-10
Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 79 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKK 138
+ G+E RL +K N ++ ++ L++ E Q+++ R +Y+ + FP+ W+
Sbjct: 24 IHGDELRLRERIKDNPTNILSYFQLIQYLE--TQESMDAEREMYEQLSSPFPIMEHAWRL 81
Query: 139 YADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC--IFAINTYGDPE---TIRRLFER 193
Y E V ++ R ++ ++D+W+ Y I +N + I +E
Sbjct: 82 YMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEF 140
Query: 194 GLAYVGTDYLSFPLWDKYIEY-EYM--------QQEWSRVAMIYTRILENPIQQLDRYFS 244
L + S WD+Y + EY+ QQ ++ Y R L+ P+ L++ +
Sbjct: 141 VLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWK 200
Query: 245 SFKEF 249
++ F
Sbjct: 201 DYENF 205
|
Length = 660 |
| >gnl|CDD|240744 cd12298, RRM3_Prp24, RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 6e-10
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
+YVRNL + ++ F FG ++ P ++ + +AFV F+D S +N
Sbjct: 3 IYVRNLDFKLDEDDLRGIFSKFGEVESIRIP--KKQDEKQGRLNNGFAFVTFKDASSAEN 60
Query: 1090 AIQASPIQLAGRQVYIE 1106
A+Q + +L GR++ +
Sbjct: 61 ALQLNGTELGGRKISVS 77
|
This subfamily corresponds to the RRM3 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 78 |
| >gnl|CDD|238296 cd00531, NTF2_like, Nuclear transport factor 2 (NTF2-like) superfamily | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-09
Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 9/120 (7%)
Query: 725 FVGQYYQVLQQQ-PDLVHQFYSDASSMIRVDGDSTESASS-MLDIHSLVISLNFTAIEIK 782
F+ +Y ++L + + Y+D + GD I V L F +
Sbjct: 4 FLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTR 63
Query: 783 TINSL-----GSWNGGVLVMVSGSVKTKEFCR--RRKFVQTFFLAPQEKGYFVLNDIFHF 835
+ S G GV+V V G ++T+ QTF L PQ G + N F
Sbjct: 64 HLVSNVDVQPGDDGEGVVVSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123
|
This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea and eukaryotes. Length = 124 |
| >gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 9e-09
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YVRNLP +VT ++ E F +G+++ GV + KD +AFVEF + A++
Sbjct: 1 LYVRNLPPSVTEEDLREFFSPYGKVE--GVRLVRNKD-RPRGFAFVEFASPEDAEAALKK 57
Query: 1094 SP-IQLAGRQVY 1104
+ L GR +
Sbjct: 58 LNGLVLDGRTLR 69
|
k.a. RRM, RBD, or RNP domain). Length = 69 |
| >gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-08
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 17/87 (19%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-----GVCYAFVEFEDISG 1086
++V++RNLP T E++E F FG +K + R KD + G AFV+F+
Sbjct: 1 RTVFIRNLPFDATEEELKELFSQFGEVK----YARIVKDKLTGHSKGT--AFVKFKTKES 54
Query: 1087 VQNAIQASP------IQLAGRQVYIEE 1107
Q ++A+ + L GR++ +
Sbjct: 55 AQKCLEAADNAEDSGLSLDGRRLIVTL 81
|
This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82 |
| >gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-08
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V NLP T ++++ F FG I+ + + + +AFVEFED + A++A
Sbjct: 1 LFVGNLPPDTTEEDLKDLFSKFGPIE--SIRIVRDETGRSKGFAFVEFEDEEDAEKALEA 58
|
(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70 |
| >gnl|CDD|240706 cd12260, RRM2_SREK1, RNA recognition motif 2 in splicing regulatory glutamine/lysine-rich protein 1 (SREK1) and similar proteins | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVCYAFVEFEDISGVQNA 1090
+++YV NL T TA ++ E F G +K +VR + YAFVEF + + V NA
Sbjct: 5 RTIYVGNLDPTTTADQLLEFFSQAGEVK----YVRMAGDETQPTRYAFVEFAEQTSVINA 60
Query: 1091 IQASPIQLAGRQVYIE 1106
++ + GR + +
Sbjct: 61 LKLNGAMFGGRPLKVN 76
|
This subfamily corresponds to the RRM2 of SREK1, also termed serine/arginine-rich-splicing regulatory protein 86-kDa (SRrp86), or splicing factor arginine/serine-rich 12 (SFRS12), or splicing regulatory protein 508 amino acid (SRrp508). SREK1 belongs to a family of proteins containing regions rich in serine-arginine dipeptides (SR proteins family), which is involved in bridge-complex formation and splicing by mediating protein-protein interactions across either introns or exons. It is a unique SR family member and it may play a crucial role in determining tissue specific patterns of alternative splicing. SREK1 can alter splice site selection by both positively and negatively modulating the activity of other SR proteins. For instance, SREK1 can activate SRp20 and repress SC35 in a dose-dependent manner both in vitro and in vivo. In addition, SREK1 contains two (some contain only one) RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and two serine-arginine (SR)-rich domains (SR domains) separated by an unusual glutamic acid-lysine (EK) rich region. The RRM and SR domains are highly conserved among other members of the SR superfamily. However, the EK domain is unique to SREK1. It plays a modulatory role controlling SR domain function by involvement in the inhibition of both constitutive and alternative splicing and in the selection of splice-site. . Length = 85 |
| >gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-07
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 1033 SVYVRNLPSTVTAFEIEEE--FQNFGRIKP-DGV-FVRNRKDVVGVCYAFVEFEDISGVQ 1088
SV+V NLP F+IEEE ++F + V VR+RK +G + +V F+ V
Sbjct: 1 SVFVGNLP-----FDIEEEELRKHFEDCGDVEAVRIVRDRKTGIGKGFGYVLFKTKDSVA 55
Query: 1089 NAIQASPIQLAGRQVYIE 1106
A++ + I+L GR++ ++
Sbjct: 56 LALKLNGIKLKGRKIRVK 73
|
This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73 |
| >gnl|CDD|240700 cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, epithelial splicing regulatory proteins (ESRPs), Drosophila RNA-binding protein Fusilli, RNA-binding protein 12 (RBM12) and similar proteins | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-07
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
V +R LP + T +I + F I PDG+ + D A+VEF + A++
Sbjct: 2 VRLRGLPFSATEEDIRDFFSGLD-IPPDGIHIVYDDDGRPTGEAYVEFASPEDARRALRK 60
Query: 1094 SPIQLAGRQVYI 1105
++ GR + +
Sbjct: 61 HNNKMGGRYIEV 72
|
The family includes RRM domains in the hnRNP H protein family, G-rich sequence factor 1 (GRSF-1), ESRPs (also termed RBM35), Drosophila Fusilli, RBM12 (also termed SWAN), RBM12B, RBM19 (also termed RBD-1) and similar proteins. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. GRSF-1 is a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. Fusilli shows high sequence homology to ESRPs. It can regulate endogenous FGFR2 splicing and functions as a splicing factor. The biological roles of both, RBM12 and RBM12B, remain unclear. RBM19 is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. Members in this family contain 2~6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 73 |
| >gnl|CDD|241133 cd12689, RRM1_hnRNPL_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-07
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI-- 1091
V+VR LP VT ++ E FG I + ++ A VEFEDIS + +
Sbjct: 5 VHVRGLPDGVTEADLVEALSEFGPIS-YVTMMPKKRQ------ALVEFEDISDAKACVNH 57
Query: 1092 -QASPIQLAGRQVYI 1105
Q +P+ +AGRQ Y
Sbjct: 58 AQQNPVYIAGRQAYF 72
|
This subfamily corresponds to the RRM1 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 80 |
| >gnl|CDD|240896 cd12450, RRM1_NUCLs, RNA recognition motif 1 found in nucleolin-like proteins mainly from plants | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNA 1090
+++V NL + ++EE F+ G + V VR +D G + VEF G Q A
Sbjct: 1 TLFVGNLSWSAEQDDLEEFFKECGEV----VDVRIAQDDDGRSKGFGHVEFATEEGAQKA 56
Query: 1091 IQASPIQLAGRQVYIE 1106
++ S +L GR++ ++
Sbjct: 57 LEKSGEELLGREIRVD 72
|
This subfamily corresponds to the RRM1 of a group of plant nucleolin-like proteins, including nucleolin 1 (also termed protein nucleolin like 1) and nucleolin 2 (also termed protein nucleolin like 2, or protein parallel like 1). They play roles in the regulation of ribosome synthesis and in the growth and development of plants. Like yeast nucleolin, nucleolin-like proteins possess two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 77 |
| >gnl|CDD|240697 cd12251, RRM3_hnRNPR_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-06
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
VK +YVRNLP + T ++ E F +G ++ V+ KD YAFV FE+ A
Sbjct: 1 VKVLYVRNLPLSTTEEQLRELFSEYGEVER----VKKIKD-----YAFVHFEERDDAVKA 51
Query: 1091 IQA 1093
++
Sbjct: 52 MEE 54
|
This subfamily corresponds to the RRM3 in hnRNP R, hnRNP Q, and APOBEC-1 complementation factor (ACF). hnRNP R is a ubiquitously expressed nuclear RNA-binding protein that specifically bind mRNAs with a preference for poly(U) stretches and has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP Q is also a ubiquitously expressed nuclear RNA-binding protein. It has been identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome, and has been implicated in the regulation of specific mRNA transport. ACF is an RNA-binding subunit of a core complex that interacts with apoB mRNA to facilitate C to U RNA editing. It may also act as an apoB mRNA recognition factor and chaperone and play a key role in cell growth and differentiation. This family also includes two functionally unknown RNA-binding proteins, RBM46 and RBM47. All members contain three conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Length = 72 |
| >gnl|CDD|240752 cd12306, RRM_II_PABPs, RNA recognition motif in type II polyadenylate-binding proteins | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1088
S++V N+ T E++E F++ G I F K +A++EF D S V+
Sbjct: 1 SIFVGNVDYGTTPEELQEHFKSCGTINRITILCDKFTGQPKG-----FAYIEFLDKSSVE 55
Query: 1089 NAIQASPIQLAGRQV 1103
NA+ + + GRQ+
Sbjct: 56 NALLLNESEFRGRQI 70
|
This subfamily corresponds to the RRM of type II polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 2 (PABP-2 or PABPN1), embryonic polyadenylate-binding protein 2 (ePABP-2 or PABPN1L) and similar proteins. PABPs are highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. ePABP-2 is predominantly located in the cytoplasm and PABP-2 is located in the nucleus. In contrast to the type I PABPs containing four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), the type II PABPs contains a single highly-conserved RRM. This subfamily also includes Saccharomyces cerevisiae RBP29 (SGN1, YIR001C) gene encoding cytoplasmic mRNA-binding protein Rbp29 that binds preferentially to poly(A). Although not essential for cell viability, Rbp29 plays a role in modulating the expression of cytoplasmic mRNA. Like other type II PABPs, Rbp29 contains one RRM only. . Length = 73 |
| >gnl|CDD|240784 cd12338, RRM1_SRSF1_like, RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV NLP + +IE+ F +G IK + R R G +AFVEFED ++A++
Sbjct: 2 IYVGNLPGDIRERDIEDLFYKYGPIKAIDLKNRRR----GPPFAFVEFEDPRDAEDAVRG 57
|
This subgroup corresponds to the RRM1 in three serine/arginine (SR) proteins: serine/arginine-rich splicing factor 1 (SRSF1 or ASF-1), serine/arginine-rich splicing factor 9 (SRSF9 or SRp30C), and plant pre-mRNA-splicing factor SF2 (SR1). SRSF1 is a shuttling SR protein involved in constitutive and alternative splicing, nonsense-mediated mRNA decay (NMD), mRNA export and translation. It also functions as a splicing-factor oncoprotein that regulates apoptosis and proliferation to promote mammary epithelial cell transformation. SRSF9 has been implicated in the activity of many elements that control splice site selection, the alternative splicing of the glucocorticoid receptor beta in neutrophils and in the gonadotropin-releasing hormone pre-mRNA. It can also interact with other proteins implicated in alternative splicing, including YB-1, rSLM-1, rSLM-2, E4-ORF4, Nop30, and p32. Both, SRSF1 and SRSF9, contain two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RS domains rich in serine-arginine dipeptides. In contrast, SF2 contains two N-terminal RRMs and a C-terminal PSK domain rich in proline, serine and lysine residues. . Length = 72 |
| >gnl|CDD|240725 cd12279, RRM_TUT1, RNA recognition motif in speckle targeted PIP5K1A-regulated poly(A) polymerase (Star-PAP) and similar proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
+SV+V + ++ + F FG + V + K V YA VEF+ GV
Sbjct: 1 AERSVFVSGFKRGTSEEQLMDYFSAFGPVM--NVIMDKDKGV----YAIVEFDSKEGVDK 54
Query: 1090 AIQASPIQLAGRQVYIEER 1108
+ L G ++ + R
Sbjct: 55 VLSEPQHTLNGHRLRVRPR 73
|
This subfamily corresponds to the RRM of Star-PAP, also termed RNA-binding motif protein 21 (RBM21), which is a ubiquitously expressed U6 snRNA-specific terminal uridylyltransferase (U6-TUTase) essential for cell proliferation. Although it belongs to the well-characterized poly(A) polymerase protein superfamily, Star-PAP is highly divergent from both, the poly(A) polymerase (PAP) and the terminal uridylyl transferase (TUTase), identified within the editing complexes of trypanosomes. Star-PAP predominantly localizes at nuclear speckles and catalyzes RNA-modifying nucleotidyl transferase reactions. It functions in mRNA biosynthesis and may be regulated by phosphoinositides. It binds to glutathione S-transferase (GST)-PIPKIalpha. Star-PAP preferentially uses ATP as a nucleotide substrate and possesses PAP activity that is stimulated by PtdIns4,5P2. It contains an N-terminal C2H2-type zinc finger motif followed by an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a split PAP domain linked by a proline-rich region, a PAP catalytic and core domain, a PAP-associated domain, an RS repeat, and a nuclear localization signal (NLS). . Length = 74 |
| >gnl|CDD|240858 cd12412, RRM_DAZL_BOULE, RNA recognition motif in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1091
++V +P T E+ + F FG +K V+ D GV Y FV FE + +
Sbjct: 5 IFVGGIPPDTTEEELRDFFSRFGSVKD----VKIITDRAGVSKGYGFVTFETQEDAEKIL 60
Query: 1092 QASPIQLAGRQVYI 1105
+ G+++ I
Sbjct: 61 AMGNLNFRGKKLNI 74
|
This subfamily corresponds to the RRM domain of two Deleted in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE. BOULE is the founder member of the family and DAZL arose from BOULE in an ancestor of vertebrates. The DAZ gene subsequently originated from a duplication transposition of the DAZL gene. Invertebrates contain a single DAZ homolog, BOULE, while vertebrates, other than catarrhine primates, possess both BOULE and DAZL genes. The catarrhine primates possess BOULE, DAZL, and DAZ genes. The family members encode closely related RNA-binding proteins that are required for fertility in numerous organisms. These proteins contain an RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a varying number of copies of a DAZ motif, believed to mediate protein-protein interactions. DAZL and BOULE contain a single copy of the DAZ motif, while DAZ proteins can contain 8-24 copies of this repeat. Although their specific biochemical functions remain to be investigated, DAZL proteins may interact with poly(A)-binding proteins (PABPs), and act as translational activators of specific mRNAs during gametogenesis. . Length = 80 |
| >gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
V+VRNLP V ++ E FG + + R+ A VEFED + +
Sbjct: 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQ-------ALVEFEDEESAKACV 55
Query: 1092 Q---ASPIQLAGRQVYIE-------ERRPNTGSTSRGG 1119
+ PI + G+ + +R N+ S G
Sbjct: 56 NFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGP 93
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). Length = 481 |
| >gnl|CDD|240837 cd12391, RRM1_SART3, RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-05
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNA 1090
+V+V NL +V E+ + F G I VR K+ G YA+VEFE+ VQ A
Sbjct: 1 TVFVSNLDYSVPEDELRKLFSKCGEI----TDVRLVKNYKGKSKGYAYVEFENEESVQEA 56
Query: 1091 IQASPIQLAGRQVYI 1105
++ + GR +++
Sbjct: 57 LKLDRELIKGRPMFV 71
|
This subfamily corresponds to the RRM1 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72 |
| >gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (110), Expect = 3e-05
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 20/123 (16%)
Query: 995 QSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQN 1054
+ YT F E SS P+S ++ +++ +++V NLP VT ++ E F+
Sbjct: 87 ERGYTKEFEEELFRSSESPKSRQKSKEEN--------NTLFVGNLPYDVTEEDLRELFKK 138
Query: 1055 FG-----RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108
FG R+ D ++R +AFVEFE + AI+ + +L GR + +++
Sbjct: 139 FGPVKRVRLVRDRETGKSRG------FAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192
Query: 1109 RPN 1111
+P
Sbjct: 193 QPA 195
|
Length = 306 |
| >gnl|CDD|240867 cd12421, RRM1_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-05
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ- 1092
+++RNLP VT ++ FG++ V + K A VE + + ++ +
Sbjct: 2 LHLRNLPPDVTESDLIALVSPFGKVT--NVLLLRGK-----NQALVEMDSVESAKSMVDY 54
Query: 1093 --ASPIQLAGRQVYIE 1106
P + GR+VYI+
Sbjct: 55 YLTVPALIRGRRVYIQ 70
|
This subfamily corresponds to the RRM1 of the majority of family members that include polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. The family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. In addition, this family also includes RNA-binding motif protein 20 (RBM20) that is an alternative splicing regulator associated with dilated cardiomyopathy (DCM) and contains only one RRM. . Length = 74 |
| >gnl|CDD|240899 cd12453, RRM1_RIM4_like, RNA recognition motif 1 in yeast meiotic activator RIM4 and similar proteins | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-05
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 1034 VYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
V+V +LP++ + E+E E F +G + VFV+ +D YAFV+F + +N
Sbjct: 5 VFVASLPASKSDDELEAAVTEHFSKYGTL----VFVKVLRDWRQRPYAFVQFTNDDDAKN 60
Query: 1090 AI-QASPIQLAGRQVYIEERRPN 1111
A+ + L GR + E + N
Sbjct: 61 ALAKGQGTILDGRHIRCERAKVN 83
|
This subfamily corresponds to the RRM1 of RIM4, also termed regulator of IME2 protein 4, a putative RNA binding protein that is expressed at elevated levels early in meiosis. It functions as a meiotic activator required for both the IME1- and IME2-dependent pathways of meiotic gene expression, as well as early events of meiosis, such as meiotic division and recombination, in Saccharomyces cerevisiae. RIM4 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes a putative RNA-binding protein termed multicopy suppressor of sporulation protein Msa1. It is a putative RNA-binding protein encoded by a novel gene, msa1, from the fission yeast Schizosaccharomyces pombe. Msa1 may be involved in the inhibition of sexual differentiation by controlling the expression of Ste11-regulated genes, possibly through the pheromone-signaling pathway. Like RIM4, Msa1 also contains two RRMs, both of which are essential for the function of Msa1. . Length = 86 |
| >gnl|CDD|240863 cd12417, RRM_SAFB_like, RNA recognition motif in the scaffold attachment factor (SAFB) family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+++V L ST A ++++ F +G++ + N + C+ FV + IQ
Sbjct: 1 NLWVSGLSSTTKAADLKQLFSKYGKVVGAKIVT-NARSPGARCFGFVTMASVEEAAKCIQ 59
Query: 1093 A-SPIQLAGRQVYIE 1106
+L GR + +E
Sbjct: 60 HLHRTELHGRVISVE 74
|
This subfamily corresponds to the RRM domain of the SAFB family, including scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), SAFB-like transcriptional modulator (SLTM), and similar proteins, which are ubiquitously expressed. SAFB1, SAFB2 and SLTM have been implicated in many diverse cellular processes including cell growth and transformation, stress response, and apoptosis. They share high sequence similarities and all contain a scaffold attachment factor-box (SAF-box, also known as SAP domain) DNA-binding motif, an RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a region rich in glutamine and arginine residues. SAFB1 is a nuclear protein with a distribution similar to that of SLTM, but unlike that of SAFB2, which is also found in the cytoplasm. To a large extent, SAFB1 and SLTM might share similar functions, such as the inhibition of an oestrogen reporter gene. The additional cytoplasmic localization of SAFB2 implies that it could play additional roles in the cytoplasmic compartment which are distinct from the nuclear functions shared with SAFB1 and SLTM. . Length = 74 |
| >gnl|CDD|240819 cd12373, RRM_SRSF3_like, RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-05
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
VYV NL T E+E+EF+ +G ++ V+V RN +AFVEFED ++A++
Sbjct: 2 VYVGNLGPRATKRELEDEFEKYGPLR--SVWVARNPPG-----FAFVEFEDPRDAEDAVR 54
Query: 1093 A 1093
A
Sbjct: 55 A 55
|
This subfamily corresponds to the RRM of two serine/arginine (SR) proteins, serine/arginine-rich splicing factor 3 (SRSF3) and serine/arginine-rich splicing factor 7 (SRSF7). SRSF3, also termed pre-mRNA-splicing factor SRp20, modulates alternative splicing by interacting with RNA cis-elements in a concentration- and cell differentiation-dependent manner. It is also involved in termination of transcription, alternative RNA polyadenylation, RNA export, and protein translation. SRSF3 is critical for cell proliferation, and tumor induction and maintenance. It can shuttle between the nucleus and cytoplasm. SRSF7, also termed splicing factor 9G8, plays a crucial role in both constitutive splicing and alternative splicing of many pre-mRNAs. Its localization and functions are tightly regulated by phosphorylation. SRSF7 is predominantly present in the nuclear and can shuttle between nucleus and cytoplasm. It cooperates with the export protein, Tap/NXF1, helps mRNA export to the cytoplasm, and enhances the expression of unspliced mRNA. Moreover, SRSF7 inhibits tau E10 inclusion through directly interacting with the proximal downstream intron of E10, a clustering region for frontotemporal dementia with Parkinsonism (FTDP) mutations. Both SRSF3 and SRSF7 contain a single N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RS domain rich in serine-arginine dipeptides. The RRM domain is involved in RNA binding, and the RS domain has been implicated in protein shuttling and protein-protein interactions. . Length = 73 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 77/361 (21%), Positives = 122/361 (33%), Gaps = 69/361 (19%)
Query: 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL--- 422
R G F+K + ++ P+ + L G++ L LA+A F K L
Sbjct: 443 RSGQFDKALAAAKKLE---KKQPDNASLHNL----LGAIYLGKGDLAKAREAFEKALSIE 495
Query: 423 PEIHLFA----ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 478
P+ A AR Q G+ D A ++ V T P L AI+ A + R GN E+A
Sbjct: 496 PD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAV 553
Query: 479 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 538
+ E+A + + AQY +L +KA IL ++ D S
Sbjct: 554 AWLEKAAELNPQ---EIEPALALAQY----YLGKGQLKKALAILNEAADAAPDSPEAWLM 606
Query: 539 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLI 598
L Q + ++ K L DS L L DA +
Sbjct: 607 LG---RAQLAAGDLNKAVSSFKKLLALQPDSA----------------LALLLLADAYAV 647
Query: 599 KKAEDRHARLFLPHRSTSELRK--RHAEDFLASERAKM-----AKSYSGAPSPAQSLMGA 651
K + L++ D ++ AK A A+SL
Sbjct: 648 MKNYAKAIT---------SLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698
Query: 652 YPSSQNPWAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAYGSSYPTPQTSVPQNAAYG 711
+P + A G+ ++ +Q + AA AY P+ Q ++ + A
Sbjct: 699 HPKA----ALGFELEGDL-------YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALL 747
Query: 712 A 712
A
Sbjct: 748 A 748
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|240675 cd12229, RRM_G3BP, RNA recognition motif (RRM) in ras GTPase-activating protein-binding protein G3BP1, G3BP2 and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFG-----RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1088
++V NLP +T E++E F+ FG RI G R + FV F+D VQ
Sbjct: 6 LFVGNLPHDITEDELKEFFKEFGNVLEVRINSKGGGGRLPN------FGFVVFDDPEAVQ 59
Query: 1089 NAIQASPIQLAGRQ-VYIEERR 1109
+ PI G + +EE++
Sbjct: 60 KILANKPIYFRGDHRLNVEEKK 81
|
This subfamily corresponds to the RRM domain in the G3BP family of RNA-binding and SH3 domain-binding proteins. G3BP acts at the level of RNA metabolism in response to cell signaling, possibly as RNA transcript stabilizing factors or an RNase. Members include G3BP1, G3BP2 and similar proteins. These proteins associate directly with the SH3 domain of GTPase-activating protein (GAP), which functions as an inhibitor of Ras. They all contain an N-terminal nuclear transfer factor 2 (NTF2)-like domain, an acidic domain, a domain containing PXXP motif(s), an RNA recognition motif (RRM), and an Arg-Gly-rich region (RGG-rich region, or arginine methylation motif). Length = 81 |
| >gnl|CDD|240830 cd12384, RRM_RBM24_RBM38_like, RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V LP T + + F FG I+ + V + +R+ Y FV F+D + A +
Sbjct: 3 IFVGGLPYHTTDDSLRKYFSQFGEIE-EAVVITDRQTGKSRGYGFVTFKDKESAERACKD 61
Query: 1094 SPIQLAGRQ 1102
+ GR+
Sbjct: 62 PNPIIDGRK 70
|
This subfamily corresponds to the RRM of RBM24 and RBM38 from vertebrate, SUPpressor family member SUP-12 from Caenorhabditis elegans and similar proteins. Both, RBM24 and RBM38, are preferentially expressed in cardiac and skeletal muscle tissues. They regulate myogenic differentiation by controlling the cell cycle in a p21-dependent or -independent manner. RBM24, also termed RNA-binding region-containing protein 6, interacts with the 3'-untranslated region (UTR) of myogenin mRNA and regulates its stability in C2C12 cells. RBM38, also termed CLL-associated antigen KW-5, or HSRNASEB, or RNA-binding region-containing protein 1(RNPC1), or ssDNA-binding protein SEB4, is a direct target of the p53 family. It is required for maintaining the stability of the basal and stress-induced p21 mRNA by binding to their 3'-UTRs. It also binds the AU-/U-rich elements in p63 3'-UTR and regulates p63 mRNA stability and activity. SUP-12 is a novel tissue-specific splicing factor that controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans. All family members contain a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76 |
| >gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 368 GDFNKVVKLYERCLIACANYPEYWIRYV 395
GD + K+YER L E W++Y
Sbjct: 1 GDIERARKIYERALEKFPKSVELWLKYA 28
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33 |
| >gnl|CDD|240758 cd12312, RRM_SRSF10_SRSF12, RNA recognition motif in serine/arginine-rich splicing factor SRSF10, SRSF12 and similar proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
S+YVRN+ ++ F +G I P + R + +A+V+FED+
Sbjct: 1 TSLYVRNVADATRPDDLRRLFGKYGPIVDVYIPLDFYTRRPR-----GFAYVQFEDVRDA 55
Query: 1088 QNAI-QASPIQLAGRQVYIE 1106
++A+ + GR++ I+
Sbjct: 56 EDALYYLDRTRFLGREIEIQ 75
|
This subfamily corresponds to the RRM of SRSF10 and SRSF12. SRSF10, also termed 40 kDa SR-repressor protein (SRrp40), or FUS-interacting serine-arginine-rich protein 1 (FUSIP1), or splicing factor SRp38, or splicing factor, arginine/serine-rich 13A (SFRS13A), or TLS-associated protein with Ser-Arg repeats (TASR). It is a serine-arginine (SR) protein that acts as a potent and general splicing repressor when dephosphorylated. It mediates global inhibition of splicing both in M phase of the cell cycle and in response to heat shock. SRSF10 emerges as a modulator of cholesterol homeostasis through the regulation of low-density lipoprotein receptor (LDLR) splicing efficiency. It also regulates cardiac-specific alternative splicing of triadin pre-mRNA and is required for proper Ca2+ handling during embryonic heart development. In contrast, the phosphorylated SRSF10 functions as a sequence-specific splicing activator in the presence of a nuclear cofactor. It activates distal alternative 5' splice site of adenovirus E1A pre-mRNA in vivo. Moreover, SRSF10 strengthens pre-mRNA recognition by U1 and U2 snRNPs. SRSF10 localizes to the nuclear speckles and can shuttle between nucleus and cytoplasm. SRSF12, also termed 35 kDa SR repressor protein (SRrp35), or splicing factor, arginine/serine-rich 13B (SFRS13B), or splicing factor, arginine/serine-rich 19 (SFRS19), is a serine/arginine (SR) protein-like alternative splicing regulator that antagonizes authentic SR proteins in the modulation of alternative 5' splice site choice. For instance, it activates distal alternative 5' splice site of the adenovirus E1A pre-mRNA in vivo. Both, SRSF10 and SRSF12, contain a single N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a C-terminal RS domain rich in serine-arginine dipeptides. . Length = 84 |
| >gnl|CDD|241042 cd12598, RRM1_SRSF9, RNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor 9 (SRSF9) | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+YV NLPS V ++E+ F +GRI+ + ++NR+ +V +AFV FED ++A+
Sbjct: 2 IYVGNLPSDVREKDLEDLFYKYGRIRD--IELKNRRGLVP--FAFVRFEDPRDAEDAV 55
|
This subgroup corresponds to the RRM1 of SRSF9, also termed pre-mRNA-splicing factor SRp30C. SRSF9 is an essential splicing regulatory serine/arginine (SR) protein that has been implicated in the activity of many elements that control splice site selection, the alternative splicing of the glucocorticoid receptor beta in neutrophils and in the gonadotropin-releasing hormone pre-mRNA. SRSF9 can also interact with other proteins implicated in alternative splicing, including YB-1, rSLM-1, rSLM-2, E4-ORF4, Nop30, and p32. SRSF9 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by an unusually short C-terminal RS domains rich in serine-arginine dipeptides. . Length = 72 |
| >gnl|CDD|240798 cd12352, RRM1_TIA1_like, RNA recognition motif 1 in granule-associated RNA binding proteins p40-TIA-1 and TIAR | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV NL TVT + E F G IK + + D YAFVE+ D A+Q
Sbjct: 1 LYVGNLDRTVTEDLLAELFSQIGPIKSCKLIREHGND----PYAFVEYYDHRSAAAALQT 56
Query: 1094 SPIQLAGRQVYIEERRPN 1111
+ GR + +E + N
Sbjct: 57 ----MNGRLILGQEIKVN 70
|
This subfamily corresponds to the RRM1 of nucleolysin TIA-1 isoform p40 (p40-TIA-1 or TIA-1) and nucleolysin TIA-1-related protein (TIAR), both of which are granule-associated RNA binding proteins involved in inducing apoptosis in cytotoxic lymphocyte (CTL) target cells. TIA-1 and TIAR share high sequence similarity. They are expressed in a wide variety of cell types. TIA-1 can be phosphorylated by a serine/threonine kinase that is activated during Fas-mediated apoptosis.TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. Both, TIA-1 and TIAR, bind specifically to poly(A) but not to poly(C) homopolymers. They are composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. TIA-1 and TIAR interact with RNAs containing short stretches of uridylates and their RRM2 can mediate the specific binding to uridylate-rich RNAs. The C-terminal auxiliary domain may be responsible for interacting with other proteins. In addition, TIA-1 and TIAR share a potential serine protease-cleavage site (Phe-Val-Arg) localized at the junction between their RNA binding domains and their C-terminal auxiliary domains. Length = 72 |
| >gnl|CDD|241041 cd12597, RRM1_SRSF1, RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV NLP + +IE+ F +G I+ + ++NR+ G +AFVEFED ++A+
Sbjct: 2 IYVGNLPPDIRTKDIEDLFYKYGAIR--DIDLKNRR---GPPFAFVEFEDPRDAEDAVYG 56
|
This subgroup corresponds to the RRM1 of SRSF1, also termed alternative-splicing factor 1 (ASF-1), or pre-mRNA-splicing factor SF2, P33 subunit. SRSF1 is a splicing regulatory serine/arginine (SR) protein involved in constitutive and alternative splicing, nonsense-mediated mRNA decay (NMD), mRNA export and translation. It also functions as a splicing-factor oncoprotein that regulates apoptosis and proliferation to promote mammary epithelial cell transformation. SRSF1 is a shuttling SR protein and contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), separated by a long glycine-rich spacer, and a C-terminal RS domains rich in serine-arginine dipeptides. . Length = 73 |
| >gnl|CDD|240802 cd12356, RRM_PPARGC1B, RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator 1-beta (PGC-1-beta) and similar proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV 1074
EG V +Y+RNL S++++ E+++ F+ FG I+ V +++R + G
Sbjct: 1 EGRV--IYIRNLSSSMSSTELKKRFEVFGEIEECKVLIKSRGEKYGF 45
|
This subfamily corresponds to the RRM of PGC-1beta, also termed PPAR-gamma coactivator 1-beta, or PPARGC-1-beta, or PGC-1-related estrogen receptor alpha coactivator, which is one of the members of PGC-1 transcriptional coactivators family, including PGC-1alpha and PGC-1-related coactivator (PRC). PGC-1beta plays a nonredundant role in controlling mitochondrial oxidative energy metabolism and affects both, insulin sensitivity and mitochondrial biogenesis, and functions in a number of oxidative tissues. It is involved in maintaining baseline mitochondrial function and cardiac contractile function following pressure overload hypertrophy by preserving glucose metabolism and preventing oxidative stress. PGC-1beta induces hypertriglyceridemia in response to dietary fats through activating hepatic lipogenesis and lipoprotein secretion. It can stimulate apolipoprotein C3 (APOC3) expression, further mediating hypolipidemic effect of nicotinic acid. PGC-1beta also drives nuclear respiratory factor 1 (NRF-1) target gene expression and NRF-1 and estrogen related receptor alpha (ERRalpha)-dependent mitochondrial biogenesis. The modulation of the expression of PGC-1beta can trigger ERRalpha-induced adipogenesis. PGC-1beta is also a potent regulator inducing angiogenesis in skeletal muscle. The transcriptional activity of PGC-1beta can be increased through binding to host cell factor (HCF), a cellular protein involved in herpes simplex virus (HSV) infection and cell cycle regulation. PGC-1beta is a multi-domain protein containing an N-terminal activation domain, an LXXLL coactivator signature, a tetrapeptide motif (DHDY) responsible for HCF binding, two glutamic/aspartic acid-rich acidic domains, and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). In contrast to PGC-1alpha, PGC-1beta lacks most of the arginine/serine (SR)-rich domain that is responsible for the regulation of RNA processing. . Length = 79 |
| >gnl|CDD|240766 cd12320, RRM6_RBM19_RRM5_MRD1, RNA recognition motif 6 in RNA-binding protein 19 (RBM19 or RBD-1) and RNA recognition motif 5 in multiple RNA-binding domain-containing protein 1 (MRD1) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 1036 VRNLPSTVTAFEIEEEFQNFGRI-------KPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1088
VRN+P T E+ E F FG++ K DG +R +AFVEF Q
Sbjct: 5 VRNVPFEATKKELRELFSPFGQVKSVRLPKKFDG---SHRG------FAFVEFVTKQEAQ 55
Query: 1089 NAIQA-SPIQLAGRQVYIE 1106
NA++A L GR + +E
Sbjct: 56 NAMEALKSTHLYGRHLVLE 74
|
This subfamily corresponds to the RRM6 of RBM19 and RRM5 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well-conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). It is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events. . Length = 76 |
| >gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 5e-04
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 182 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 215
GD E R+++ER L S LW KY E+E
Sbjct: 1 GDIERARKIYERALEKFP---KSVELWLKYAEFE 31
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33 |
| >gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 13/137 (9%)
Query: 183 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE-----NPIQ 237
D R LFE + + + PLW K+I+YE + S + + R+ E PI+
Sbjct: 85 DDTNARVLFETVVTKLTPEPELKPLWKKFIKYESKFGDLSSILKLEKRMFELFPEDPPIE 144
Query: 238 QL-DRYFSSFKEFA--ASRPLSELRTAEEVDAAAVAVAAA---PSETGAEVKANEEEVQP 291
DRY SF +F R L + E A V A + ++++ +
Sbjct: 145 LFSDRY--SFLDFDPIKKRELGSPGSQERPKATLNPVTQATNSKKRPLEDDDSSKKPDKS 202
Query: 292 DATEQTSKPVSAGLTEA 308
+Q + S
Sbjct: 203 RRLDQQRRSPSTNPAPQ 219
|
This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and an important role of the GU-rich sequence for this regulation to occur. Length = 271 |
| >gnl|CDD|240677 cd12231, RRM2_U2AF65, RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1091
+++ LP+ ++ +++E ++FG++K F + G+ YAF E+ D S AI
Sbjct: 3 IFIGGLPNYLSEDQVKELLESFGKLK---AFNLVKDSATGLSKGYAFCEYLDPSVTDQAI 59
Query: 1092 QA-SPIQLAGR 1101
+ +QL +
Sbjct: 60 AGLNGMQLGDK 70
|
This subfamily corresponds to the RRM2 of U2AF65 and dU2AF50. U2AF65, also termed U2AF2, is the large subunit of U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF), which has been implicated in the recruitment of U2 snRNP to pre-mRNAs and is a highly conserved heterodimer composed of large and small subunits. U2AF65 specifically recognizes the intron polypyrimidine tract upstream of the 3' splice site and promotes binding of U2 snRNP to the pre-mRNA branchpoint. U2AF65 also plays an important role in the nuclear export of mRNA. It facilitates the formation of a messenger ribonucleoprotein export complex, containing both the NXF1 receptor and the RNA substrate. Moreover, U2AF65 interacts directly and specifically with expanded CAG RNA, and serves as an adaptor to link expanded CAG RNA to NXF1 for RNA export. U2AF65 contains an N-terminal RS domain rich in arginine and serine, followed by a proline-rich segment and three C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The N-terminal RS domain stabilizes the interaction of U2 snRNP with the branch point (BP) by contacting the branch region, and further promotes base pair interactions between U2 snRNA and the BP. The proline-rich segment mediates protein-protein interactions with the RRM domain of the small U2AF subunit (U2AF35 or U2AF1). The RRM1 and RRM2 are sufficient for specific RNA binding, while RRM3 is responsible for protein-protein interactions. The family also includes Splicing factor U2AF 50 kDa subunit (dU2AF50), the Drosophila ortholog of U2AF65. dU2AF50 functions as an essential pre-mRNA splicing factor in flies. It associates with intronless mRNAs and plays a significant and unexpected role in the nuclear export of a large number of intronless mRNAs. Length = 77 |
| >gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 7e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHE 143
+I + R++Y+ L +FP W KYA+ E
Sbjct: 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33 |
| >gnl|CDD|240688 cd12242, RRM_SLIRP, RNA recognition motif found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 9e-04
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V NLP TV + E++E F FG++K V +++ + Y FV F G++NA+Q
Sbjct: 2 LFVGNLPWTVGSKELKEYFSQFGKVKSCNV-PFDKETGLSKGYGFVSFSSRDGLENALQK 60
Query: 1094 SPIQLAGRQVYI 1105
L G ++ +
Sbjct: 61 QKHILEGNKLQV 72
|
This subfamily corresponds to the RRM of SLIRP, a widely expressed small steroid receptor RNA activator (SRA) binding protein, which binds to STR7, a functional substructure of SRA. SLIRP is localized predominantly to the mitochondria and plays a key role in modulating several nuclear receptor (NR) pathways. It functions as a co-repressor to repress SRA-mediated nuclear receptor coactivation. It modulates SHARP- and SKIP-mediated co-regulation of NR activity. SLIRP contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is required for SLIRP's corepression activities. . Length = 73 |
| >gnl|CDD|241196 cd12752, RRM1_RBM5, RNA recognition motif 1 in vertebrate RNA-binding protein 5 (RBM5) | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.001
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
DE E K++ +R LP +T +I E ++F +P V + RK V +AFVEF +
Sbjct: 1 DEKESKTIMLRGLPINITENDIRELIESFEGPQPADVRLMKRKTGVSRGFAFVEFYHLQD 60
Query: 1087 VQNAIQASPIQLA--GRQVYIEERRP 1110
+ ++A+ +L G+ + + P
Sbjct: 61 ATSWMEANQKKLVIQGKTIAMHYSNP 86
|
This subgroup corresponds to the RRM1 of RBM5, also termed protein G15, or putative tumor suppressor LUCA15, or renal carcinoma antigen NY-REN-9, a known modulator of apoptosis. It may also act as a tumor suppressor or an RNA splicing factor. RBM5 shows high sequence similarity to RNA-binding protein 6 (RBM6 or NY-LU-12 or g16 or DEF-3). Both, RBM5 and RBM6, specifically bind poly(G) RNA. They contain two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two C2H2-type zinc fingers, a nuclear localization signal, and a G-patch/D111 domain. . Length = 87 |
| >gnl|CDD|240683 cd12237, RRM_snRNP35, RNA recognition motif found in U11/U12 small nuclear ribonucleoprotein 35 kDa protein (U11/U12-35K) and similar proteins | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---GVCYAFVEFEDISGVQ 1088
+++V L T + E F +G I+ +R +D+V YAFVE+E
Sbjct: 4 LTLFVGRLSLQTTEETLREVFSRYGDIRR----LRLVRDIVTGFSKGYAFVEYEHERDAL 59
Query: 1089 NAIQ-ASPIQLAGRQVYIE---ERR 1109
A + A + + G +++++ ER
Sbjct: 60 RAYRDAHKLVIDGSEIFVDFERERT 84
|
This subfamily corresponds to the RRM of U11/U12-35K, also termed protein HM-1, or U1 snRNP-binding protein homolog, and is one of the components of the U11/U12 snRNP, which is a subunit of the minor (U12-dependent) spliceosome required for splicing U12-type nuclear pre-mRNA introns. U11/U12-35K is highly conserved among bilateria and plants, but lacks in some organisms, such as Saccharomyces cerevisiae and Caenorhabditis elegans. Moreover, U11/U12-35K shows significant sequence homology to U1 snRNP-specific 70 kDa protein (U1-70K or snRNP70). It contains a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by an adjacent glycine-rich region, and Arg-Asp and Arg-Glu dipeptide repeats rich domain, making U11/U12-35K a possible functional analog of U1-70K. It may facilitate 5' splice site recognition in the minor spliceosome and play a role in exon bridging, interacting with components of the major spliceosome bound to the pyrimidine tract of an upstream U2-type intron. The family corresponds to the RRM of U11/U12-35K that may directly contact the U11 or U12 snRNA through the RRM domain. Length = 93 |
| >gnl|CDD|240796 cd12350, RRM3_SHARP, RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+++++ NL T T ++ E F+ FG I + + +K YAF+++ DI+ V A+
Sbjct: 3 RTLFIGNLEKTTTYSDLREAFERFGEI----IDIDIKKQGGNPAYAFIQYADIASVVKAM 58
Query: 1092 Q 1092
+
Sbjct: 59 R 59
|
This subfamily corresponds to the RRM3 of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins. . Length = 74 |
| >gnl|CDD|240938 cd12494, RRM3_hnRNPR, RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R) | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.001
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
VK ++VRNL +TVT +E+ F FG+++ V+ KD YAFV FE+ A
Sbjct: 1 VKVLFVRNLATTVTEEILEKSFSEFGKLER----VKKLKD-----YAFVHFEERDAAVRA 51
Query: 1091 I-QASPIQLAGRQVYIEERRP 1110
+ + + ++ G ++ I +P
Sbjct: 52 MDEMNGKEIEGEEIEIVLAKP 72
|
This subgroup corresponds to the RRM3 of hnRNP R. a ubiquitously expressed nuclear RNA-binding protein that specifically bind mRNAs with a preference for poly(U) stretches. Upon binding of RNA, hnRNP R forms oligomers, most probably dimers. hnRNP R has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP R is predominantly located in axons of motor neurons and to a much lower degree in sensory axons. In axons of motor neurons, it also functions as a cytosolic protein and interacts with wild type of survival motor neuron (SMN) proteins directly, further providing a molecular link between SMN and the spliceosome. Moreover, hnRNP R plays an important role in neural differentiation and development, as well as in retinal development and light-elicited cellular activities. hnRNP R contains an acidic auxiliary N-terminal region, followed by two well-defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RGG motif; hnRNP R binds RNA through its RRM domains. . Length = 72 |
| >gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 1035 YVRNLPSTVTAFEIEEEFQNFG-----RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
YV NLP VT ++++ F FG R+ D R+R + FVE E
Sbjct: 3 YVGNLPYNVTEEDLKDLFGQFGEVTSARVITDRETGRSRG------FGFVEMETAEEANA 56
Query: 1090 AIQA-SPIQLAGRQVYIEERRP 1110
AI+ + GR + + E RP
Sbjct: 57 AIEKLNGTDFGGRTLTVNEARP 78
|
This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. . Length = 78 |
| >gnl|CDD|240794 cd12348, RRM1_SHARP, RNA recognition motif 1 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
++V NLP V I E F+ +GR++ + + D GV AFV+F DI Q A
Sbjct: 1 HLWVGNLPENVREERISEHFKRYGRVESVKILPKRGSD-GGVA-AFVDFVDIKSAQKAHN 58
Query: 1093 ASPIQLAGRQVYIE 1106
A + R + +
Sbjct: 59 AVNK-MGDRDLRTD 71
|
This subfamily corresponds to the RRM1 of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins. . Length = 75 |
| >gnl|CDD|240825 cd12379, RRM2_I_PABPs, RNA recognition motif 2 found in type I polyadenylate-binding proteins | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.001
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1091
++++NL ++ + + F FG I V D G Y FV FE AI
Sbjct: 5 IFIKNLDKSIDNKALYDTFSAFGNILSCKV----ATDENGGSKGYGFVHFETEEAAVRAI 60
Query: 1092 QA-SPIQLAGRQVYI 1105
+ + + L ++V++
Sbjct: 61 EKVNGMLLNDKKVFV 75
|
This subfamily corresponds to the RRM2 of type I poly(A)-binding proteins (PABPs), highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. The family represents type I polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 1 (PABP-1 or PABPC1), polyadenylate-binding protein 3 (PABP-3 or PABPC3), polyadenylate-binding protein 4 (PABP-4 or APP-1 or iPABP), polyadenylate-binding protein 5 (PABP-5 or PABPC5), polyadenylate-binding protein 1-like (PABP-1-like or PABPC1L), polyadenylate-binding protein 1-like 2 (PABPC1L2 or RBM32), polyadenylate-binding protein 4-like (PABP-4-like or PABPC4L), yeast polyadenylate-binding protein, cytoplasmic and nuclear (PABP or ACBP-67), and similar proteins. PABP-1 is a ubiquitously expressed multifunctional protein that may play a role in 3' end formation of mRNA, translation initiation, mRNA stabilization, protection of poly(A) from nuclease activity, mRNA deadenylation, inhibition of mRNA decapping, and mRNP maturation. Although PABP-1 is thought to be a cytoplasmic protein, it is also found in the nucleus. PABP-1 may be involved in nucleocytoplasmic trafficking and utilization of mRNP particles. PABP-1 contains four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a less well conserved linker region, and a proline-rich C-terminal conserved domain (CTD). PABP-3 is a testis-specific poly(A)-binding protein specifically expressed in round spermatids. It is mainly found in mammalian and may play an important role in the testis-specific regulation of mRNA homeostasis. PABP-3 shows significant sequence similarity to PABP-1. However, it binds to poly(A) with a lower affinity than PABP-1. Moreover, PABP-1 possesses an A-rich sequence in its 5'-UTR and allows binding of PABP and blockage of translation of its own mRNA. In contrast, PABP-3 lacks the A-rich sequence in its 5'-UTR. PABP-4 is an inducible poly(A)-binding protein (iPABP) that is primarily localized to the cytoplasm. It shows significant sequence similarity to PABP-1 as well. The RNA binding properties of PABP-1 and PABP-4 appear to be identical. PABP-5 is encoded by PABPC5 gene within the X-specific subinterval, and expressed in fetal brain and in a range of adult tissues in mammalian, such as ovary and testis. It may play an important role in germ cell development. Unlike other PABPs, PABP-5 contains only four RRMs, but lacks both the linker region and the CTD. PABP-1-like and PABP-1-like 2 are the orthologs of PABP-1. PABP-4-like is the ortholog of PABP-5. Their cellular functions remain unclear. The family also includes the yeast PABP, a conserved poly(A) binding protein containing poly(A) tails that can be attached to the 3'-ends of mRNAs. The yeast PABP and its homologs may play important roles in the initiation of translation and in mRNA decay. Like vertebrate PABP-1, the yeast PABP contains four RRMs, a linker region, and a proline-rich CTD as well. The first two RRMs are mainly responsible for specific binding to poly(A). The proline-rich region may be involved in protein-protein interactions. . Length = 77 |
| >gnl|CDD|240687 cd12241, RRM_SF3B14, RNA recognition motif found in pre-mRNA branch site protein p14 (SF3B14) and similar proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YVRNLP +++ E+ + F +G I+ + + N K+ G AFV +EDI +NA
Sbjct: 5 LYVRNLPFKISSEELYDLFGKYGAIRQ--IRIGNTKETRGT--AFVVYEDIYDAKNACDH 60
Query: 1094 -SPIQLAGR 1101
S +A R
Sbjct: 61 LSGFNVANR 69
|
This subfamily corresponds to the RRM of SF3B14 (also termed p14), a 14 kDa protein subunit of SF3B which is a multiprotein complex that is an integral part of the U2 small nuclear ribonucleoprotein (snRNP) and the U11/U12 di-snRNP. SF3B is essential for the accurate excision of introns from pre-messenger RNA and has been involved in the recognition of the pre-mRNA's branch site within the major and minor spliceosomes. SF3B14 associates directly with another SF3B subunit called SF3B155. It is also present in both U2- and U12-dependent spliceosomes and may contribute to branch site positioning in both the major and minor spliceosome. Moreover, SF3B14 interacts directly with the pre-mRNA branch adenosine early in spliceosome assembly and within the fully assembled spliceosome. SF3B14 contains one well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 77 |
| >gnl|CDD|240737 cd12291, RRM1_La, RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV----VGVCYAFVEFEDISGVQ 1088
+VYV+ P T +I+E F+ FG++ +R R+D+ G FVEF+ +
Sbjct: 1 TVYVKGFPKDATLDDIQEFFEKFGKV----NNIRMRRDLDKKFKGSV--FVEFKTEEDAK 54
Query: 1089 NAIQASPIQLAGRQVYIE 1106
++ ++ +++ +
Sbjct: 55 KFLEKEKLKYKEKELTVM 72
|
This subfamily corresponds to the RRM1 of La autoantigen, also termed Lupus La protein, or La ribonucleoprotein, or Sjoegren syndrome type B antigen (SS-B), a highly abundant nuclear phosphoprotein and well conserved in eukaryotes. It specifically binds the 3'-terminal UUU-OH motif of nascent RNA polymerase III transcripts and protects them from exonucleolytic degradation by 3' exonucleases. In addition, La can directly facilitate the translation and/or metabolism of many UUU-3' OH-lacking cellular and viral mRNAs, through binding internal RNA sequences within the untranslated regions of target mRNAs. La contains an N-terminal La motif (LAM), followed by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It also possesses a short basic motif (SBM) and a nuclear localization signal (NLS) at the C-terminus. . Length = 72 |
| >gnl|CDD|240859 cd12413, RRM1_RBM28_like, RNA recognition motif 1 in RNA-binding protein 28 (RBM28) and similar proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+++VRNLP T ++EE F G IK V+++ + +V F + A++
Sbjct: 1 TLFVRNLPYDTTDEQLEEFFSEVGPIK-RCFVVKDKGSKKCRGFGYVTFALEEDAKRALE 59
Query: 1093 ASP-IQLAGRQVYIE 1106
+ GR++++E
Sbjct: 60 EKKKTKFGGRKIHVE 74
|
This subfamily corresponds to the RRM1 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 79 |
| >gnl|CDD|241058 cd12614, RRM1_PUB1, RNA recognition motif 1 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV NL VT +++ FQ G ++ V + K+ GV Y FVE+ + A+Q
Sbjct: 1 LYVGNLDPRVTEDILKQIFQVGGPVQ--NVKIIPDKNNKGVNYGFVEYHQSHDAEIALQT 58
Query: 1094 SPIQLAGRQVYIEERRPN 1111
L GRQ+ E R N
Sbjct: 59 ----LNGRQIENNEIRVN 72
|
This subgroup corresponds to the RRM1 of yeast protein PUB1, also termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein. PUB1 has been identified as both, a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP), which may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. It is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA); however, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 74 |
| >gnl|CDD|240967 cd12523, RRM2_MRN1, RNA recognition motif 2 of RNA-binding protein MRN1 and similar proteins | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1088
G ++VY+ NLP + + E+ E+ + FG I D + + K++ AFV F I+
Sbjct: 1 GASRNVYIGNLPESYSEEELREDLEKFGPI--DQIKIVKEKNI-----AFVHFLSIANAI 53
Query: 1089 NAIQASPIQ--LAGRQVY 1104
+ P + A R+++
Sbjct: 54 KVVTTLPCEPDYASRRIF 71
|
This subgroup corresponds to the RRM2 of MRN1, also termed multicopy suppressor of RSC-NHP6 synthetic lethality protein 1, or post-transcriptional regulator of 69 kDa, which is a RNA-binding protein found in yeast. Although its specific biological role remains unclear, MRN1 might be involved in translational regulation. Members in this family contain four copies of conserved RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 78 |
| >gnl|CDD|240939 cd12495, RRM3_hnRNPQ, RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein Q (hnRNP Q) | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.002
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
VK ++VRNL +TVT +E+ F FG+++ V+ KD YAF+ F++ G A
Sbjct: 1 VKVLFVRNLANTVTEEILEKAFGQFGKLER----VKKLKD-----YAFIHFDERDGAVKA 51
Query: 1091 I-QASPIQLAGRQVYIEERRP 1110
+ + + +L G + I +P
Sbjct: 52 MEEMNGKELEGENIEIVFAKP 72
|
This subgroup corresponds to the RRM3 of hnRNP Q, also termed glycine- and tyrosine-rich RNA-binding protein (GRY-RBP), or NS1-associated protein 1 (NASP1), or synaptotagmin-binding, cytoplasmic RNA-interacting protein (SYNCRIP). It is a ubiquitously expressed nuclear RNA-binding protein identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome. As an alternatively spliced version of NSAP, it acts as an interaction partner of a multifunctional protein required for viral replication, and is implicated in the regulation of specific mRNA transport. hnRNP Q has also been identified as SYNCRIP that is a dual functional protein participating in both viral RNA replication and translation. As a synaptotagmin-binding protein, hnRNP Q plays a putative role in organelle-based mRNA transport along the cytoskeleton. Moreover, hnRNP Q has been found in protein complexes involved in translationally coupled mRNA turnover and mRNA splicing. It functions as a wild-type survival motor neuron (SMN)-binding protein that may participate in pre-mRNA splicing and modulate mRNA transport along microtubuli. hnRNP Q contains an acidic auxiliary N-terminal region, followed by two well defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RGG motif; hnRNP Q binds RNA through its RRM domains. . Length = 72 |
| >gnl|CDD|241043 cd12599, RRM1_SF2_plant_like, RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
VYV NLP + E+E+ F +G I + + R YAF+EFED ++AI+
Sbjct: 2 VYVGNLPGDIREREVEDLFYKYGPIVDIDLKLPPRPP----GYAFIEFEDARDAEDAIRG 57
|
This subgroup corresponds to the RRM1 of SF2, also termed SR1 protein, a plant serine/arginine (SR)-rich phosphoprotein similar to the mammalian splicing factor SF2/ASF. It promotes splice site switching in mammalian nuclear extracts. SF2 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a C-terminal domain rich in proline, serine and lysine residues (PSK domain), a composition reminiscent of histones. This PSK domain harbors a putative phosphorylation site for the mitotic kinase cyclin/p34cdc2. . Length = 72 |
| >gnl|CDD|240789 cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.003
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V NLP T+ E+ F+ +G + V V+N Y FV E+ ++AI+A
Sbjct: 2 LFVGNLPDATTSEELRALFEKYGTVTECDV-VKN--------YGFVHMEEEEDAEDAIKA 52
|
This subfamily corresponds to the RRM in CoAA (also known as RBM14 or PSP2) and RNA-binding protein 4 (RBM4). CoAA is a heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein identified as a nuclear receptor coactivator. It mediates transcriptional coactivation and RNA splicing effects in a promoter-preferential manner, and is enhanced by thyroid hormone receptor-binding protein (TRBP). CoAA contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a TRBP-interacting domain. RBM4 is a ubiquitously expressed splicing factor with two isoforms, RBM4A (also known as Lark homolog) and RBM4B (also known as RBM30), which are very similar in structure and sequence. RBM4 may also function as a translational regulator of stress-associated mRNAs as well as play a role in micro-RNA-mediated gene regulation. RBM4 contains two N-terminal RRMs, a CCHC-type zinc finger, and three alanine-rich regions within their C-terminal regions. This family also includes Drosophila RNA-binding protein lark (Dlark), a homolog of human RBM4. It plays an important role in embryonic development and in the circadian regulation of adult eclosion. Dlark shares high sequence similarity with RBM4 at the N-terminal region. However, Dlark has three proline-rich segments instead of three alanine-rich segments within the C-terminal region. . Length = 66 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (93), Expect = 0.003
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 368 GDFNKVVKLYERCLIA---CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 424
GD+ + ++LYE+ L E + +EA G + A L +A + E
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203
Query: 425 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 484
L + G + A Y+ E P EA+ A + LG E+A E+A
Sbjct: 204 ALLNLGLLYLKLGKYEEALEYYEKAL-ELDPDNAEALYNLALLLLELGRYEEALEALEKA 262
Query: 485 IAIEKGKEH 493
+ ++ +
Sbjct: 263 LELDPDLYN 271
|
Length = 291 |
| >gnl|CDD|240801 cd12355, RRM_RBM18, RNA recognition motif in eukaryotic RNA-binding protein 18 and similar proteins | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKP-DGVFVRNRKDV-VGVCYAFVEFEDISGVQNAI 1091
+++ NL S +T F + + F +G+IK D +F ++ Y FV FE + A+
Sbjct: 2 LWIGNLDSRLTEFHLLKLFSKYGKIKKFDFLFHKSGPLKGQPRGYCFVTFETKEEAEKAL 61
Query: 1092 Q 1092
+
Sbjct: 62 K 62
|
This subfamily corresponds to the RRM of RBM18, a putative RNA-binding protein containing a well-conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The biological role of RBM18 remains unclear. . Length = 80 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 3/122 (2%)
Query: 838 EEPVYQHPAPVLSENKFDVQHDA--SSPIPEQ-AGLAASDYVLEEEAREYVSSVHIEDDA 894
EEPV + H ++P+ EQ + SD + +E E+ V D
Sbjct: 896 EEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDE 955
Query: 895 TDNYSLPEQQQDEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEPQRKTY 954
T + + + EV + A + + P A + + +
Sbjct: 956 TADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNH 1015
Query: 955 AS 956
A+
Sbjct: 1016 AT 1017
|
Length = 1068 |
| >gnl|CDD|240736 cd12290, RRM1_LARP7, RNA recognition motif 1 in La-related protein 7 (LARP7) and similar proteins | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-----RNRKDVVGVCYAFVEFEDISGVQ 1088
VYV LP T ++ F +G + V+V ++ D+ G +AF+EFE Q
Sbjct: 2 VYVECLPKNATHEWLKAVFSKYGTV----VYVSLPRYKHTGDIKG--FAFIEFETPEEAQ 55
Query: 1089 NAIQA 1093
A +
Sbjct: 56 KACKH 60
|
This subfamily corresponds to the RRM1 of LARP7, also termed La ribonucleoprotein domain family member 7, or P-TEFb-interaction protein for 7SK stability (PIP7S), an oligopyrimidine-binding protein that binds to the highly conserved 3'-terminal U-rich stretch (3' -UUU-OH) of 7SK RNA. LARP7 is a stable component of the 7SK small nuclear ribonucleoprotein (7SK snRNP). It intimately associates with all the nuclear 7SK and is required for 7SK stability. LARP7 also acts as a negative transcriptional regulator of cellular and viral polymerase II genes, acting by means of the 7SK snRNP system. It plays an essential role in the inhibition of positive transcription elongation factor b (P-TEFb)-dependent transcription, which has been linked to the global control of cell growth and tumorigenesis. LARP7 contains a La motif (LAM) and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), at the N-terminal region, which mediates binding to the U-rich 3' terminus of 7SK RNA. LARP7 also carries another putative RRM domain at its C-terminus. . Length = 80 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1167 | |||
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 100.0 | |
| KOG0116 | 419 | consensus RasGAP SH3 binding protein rasputin, con | 100.0 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 100.0 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 100.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 100.0 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG2104 | 126 | consensus Nuclear transport factor 2 [Intracellula | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| cd00780 | 119 | NTF2 Nuclear transport factor 2 (NTF2) domain play | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 99.89 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.89 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.88 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PF02136 | 118 | NTF2: Nuclear transport factor 2 (NTF2) domain; In | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG4353 | 139 | consensus RNA export factor NXT1 [RNA processing a | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.76 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.74 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| PLN03134 | 144 | glycine-rich RNA-binding protein 4; Provisional | 99.7 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.7 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.69 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.65 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.65 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.64 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 99.59 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.58 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 99.58 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG0113 | 335 | consensus U1 small nuclear ribonucleoprotein (RRM | 99.54 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.54 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.53 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.53 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| KOG0107 | 195 | consensus Alternative splicing factor SRp20/9G8 (R | 99.52 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.47 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.46 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.45 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.42 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.42 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.41 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.41 | |
| KOG0121 | 153 | consensus Nuclear cap-binding protein complex, sub | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 99.4 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.4 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.39 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 99.37 | |
| KOG0149 | 247 | consensus Predicted RNA-binding protein SEB4 (RRM | 99.36 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.34 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.34 | |
| KOG4207 | 256 | consensus Predicted splicing factor, SR protein su | 99.34 | |
| KOG0125 | 376 | consensus Ataxin 2-binding protein (RRM superfamil | 99.3 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.29 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.28 | |
| KOG0122 | 270 | consensus Translation initiation factor 3, subunit | 99.28 | |
| PF00076 | 70 | RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or | 99.25 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| PLN03120 | 260 | nucleic acid binding protein; Provisional | 99.23 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.21 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.21 | |
| PLN03213 | 759 | repressor of silencing 3; Provisional | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.2 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.17 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.16 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 99.16 | |
| KOG0126 | 219 | consensus Predicted RNA-binding protein (RRM super | 99.15 | |
| PLN03121 | 243 | nucleic acid binding protein; Provisional | 99.15 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.14 | |
| PF14259 | 70 | RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or | 99.14 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| KOG0130 | 170 | consensus RNA-binding protein RBM8/Tsunagi (RRM su | 99.13 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.13 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.11 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 99.11 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.07 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.07 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 99.06 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.05 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.05 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.03 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.02 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.01 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.01 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.01 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 99.0 | |
| KOG0111 | 298 | consensus Cyclophilin-type peptidyl-prolyl cis-tra | 98.99 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 98.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.99 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 98.99 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 98.98 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.97 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 98.95 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 98.95 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.95 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.94 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.93 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 98.92 | |
| smart00362 | 72 | RRM_2 RNA recognition motif. | 98.92 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.92 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 98.9 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.9 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.88 | |
| KOG0108 | 435 | consensus mRNA cleavage and polyadenylation factor | 98.88 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 98.88 | |
| smart00360 | 71 | RRM RNA recognition motif. | 98.87 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 98.87 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.86 | |
| KOG0114 | 124 | consensus Predicted RNA-binding protein (RRM super | 98.85 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 98.84 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.82 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 98.82 | |
| COG0724 | 306 | RNA-binding proteins (RRM domain) [General functio | 98.78 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 98.77 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 98.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.74 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.74 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 98.73 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 98.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.73 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 98.72 | |
| cd00590 | 74 | RRM RRM (RNA recognition motif), also known as RBD | 98.71 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| smart00361 | 70 | RRM_1 RNA recognition motif. | 98.69 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 98.68 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 98.68 | |
| KOG4209 | 231 | consensus Splicing factor RNPS1, SR protein superf | 98.68 | |
| KOG0415 | 479 | consensus Predicted peptidyl prolyl cis-trans isom | 98.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.66 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.65 | |
| KOG0153 | 377 | consensus Predicted RNA-binding protein (RRM super | 98.65 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.59 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 98.58 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.57 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.55 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.55 | |
| PF13893 | 56 | RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or | 98.52 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 98.48 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 98.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.47 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 98.44 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.42 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.37 | |
| KOG4208 | 214 | consensus Nucleolar RNA-binding protein NIFK [Gene | 98.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.37 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.37 | |
| KOG0533 | 243 | consensus RRM motif-containing protein [RNA proces | 98.34 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.33 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 98.31 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.3 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 98.28 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.27 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.25 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 98.24 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 98.21 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.21 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 98.2 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.19 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.18 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 98.15 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 98.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.14 | |
| KOG0226 | 290 | consensus RNA-binding proteins [General function p | 98.13 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.12 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 98.11 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.09 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.08 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.07 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.03 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.02 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 98.02 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.01 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.99 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.95 | |
| KOG1995 | 351 | consensus Conserved Zn-finger protein [General fun | 97.94 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.94 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.94 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.93 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.92 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.9 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.86 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.83 | |
| KOG4454 | 267 | consensus RNA binding protein (RRM superfamily) [G | 97.82 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.81 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.8 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 97.75 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 97.73 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.73 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.73 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.71 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.71 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.7 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.69 | |
| KOG4210 | 285 | consensus Nuclear localization sequence binding pr | 97.69 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.68 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 97.67 | |
| KOG0151 | 877 | consensus Predicted splicing regulator, contains R | 97.67 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.66 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.66 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 97.65 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.63 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.63 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.62 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.61 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.58 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.55 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.54 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 97.49 | |
| KOG1855 | 484 | consensus Predicted RNA-binding protein [General f | 97.47 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.46 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.46 | |
| KOG4660 | 549 | consensus Protein Mei2, essential for commitment t | 97.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.44 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.41 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.38 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.37 | |
| PF10429 | 166 | Mtr2: Nuclear pore RNA shuttling protein Mtr2; Int | 97.36 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 97.29 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.28 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.28 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.27 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.22 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.18 | |
| cd00531 | 124 | NTF2_like Nuclear transport factor 2 (NTF2-like) s | 97.13 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.12 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 97.08 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.07 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.01 | |
| PF04059 | 97 | RRM_2: RNA recognition motif 2; InterPro: IPR00720 | 97.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.98 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.98 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.96 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 96.94 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 96.94 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.9 | |
| PF08777 | 105 | RRM_3: RNA binding motif; InterPro: IPR014886 This | 96.9 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.84 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.84 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.84 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 96.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.78 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 96.7 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.69 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.69 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.67 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.67 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.62 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 96.61 | |
| KOG2202 | 260 | consensus U2 snRNP splicing factor, small subunit, | 96.57 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 96.56 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.55 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 96.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.4 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.34 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 96.29 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.24 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.23 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 96.23 | |
| PF11608 | 90 | Limkain-b1: Limkain b1; InterPro: IPR024582 This e | 96.23 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.21 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 96.2 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.19 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.18 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 96.16 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.15 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.06 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 96.0 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 95.91 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.85 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 95.82 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.81 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 95.75 | |
| KOG3973 | 465 | consensus Uncharacterized conserved glycine-rich p | 95.73 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.66 | |
| PF15008 | 262 | DUF4518: Domain of unknown function (DUF4518) | 95.64 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.59 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.53 | |
| PF05172 | 100 | Nup35_RRM: Nup53/35/40-type RNA recognition motif; | 95.51 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.47 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 95.41 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.4 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 95.39 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 95.36 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 95.33 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.33 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.29 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.14 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 95.08 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 95.08 | |
| PF14605 | 53 | Nup35_RRM_2: Nup53/35/40-type RNA recognition moti | 95.07 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.84 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 94.66 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.65 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 94.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.57 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 94.52 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.5 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.5 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 94.44 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.34 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.27 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.15 | |
| PF08952 | 146 | DUF1866: Domain of unknown function (DUF1866) ; In | 94.01 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 93.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.75 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 93.7 | |
| KOG3152 | 278 | consensus TBP-binding protein, activator of basal | 93.69 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.65 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 93.59 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 93.47 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 93.47 | |
| KOG2253 | 668 | consensus U1 snRNP complex, subunit SNU71 and rela | 93.35 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.25 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.19 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.17 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.12 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 93.0 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.94 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.93 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 92.89 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.86 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 92.71 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 92.63 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.56 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 92.46 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 92.4 | |
| TIGR02246 | 128 | conserved hypothetical protein. This family consis | 92.29 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 92.29 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 92.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.97 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 91.96 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 91.9 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 91.89 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.84 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 91.77 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 91.71 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.68 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 91.53 | |
| PF13474 | 121 | SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE | 91.28 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 91.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.88 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 90.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.47 | |
| KOG4676 | 479 | consensus Splicing factor, arginine/serine-rich [R | 90.41 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 90.38 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 90.34 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 90.24 | |
| KOG0115 | 275 | consensus RNA-binding protein p54nrb (RRM superfam | 89.96 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 89.82 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 89.37 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.21 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 89.01 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 88.85 | |
| KOG1996 | 378 | consensus mRNA splicing factor [RNA processing and | 88.81 | |
| KOG0112 | 975 | consensus Large RNA-binding protein (RRM superfami | 88.57 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.48 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.4 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.03 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.83 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 87.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.8 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.44 | |
| KOG3262 | 215 | consensus H/ACA small nucleolar RNP component GAR1 | 87.24 | |
| KOG2416 | 718 | consensus Acinus (induces apoptotic chromatin cond | 86.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 86.0 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.81 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 85.75 | |
| PF10309 | 62 | DUF2414: Protein of unknown function (DUF2414); In | 85.47 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 85.34 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 85.31 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 84.92 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 84.75 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.27 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 83.75 | |
| KOG0116 | 419 | consensus RasGAP SH3 binding protein rasputin, con | 83.72 | |
| KOG2193 | 584 | consensus IGF-II mRNA-binding protein IMP, contain | 83.17 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.08 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 82.21 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 82.08 | |
| PF15023 | 166 | DUF4523: Protein of unknown function (DUF4523) | 81.38 | |
| KOG0112 | 975 | consensus Large RNA-binding protein (RRM superfami | 81.34 | |
| PF14534 | 107 | DUF4440: Domain of unknown function (DUF4440); PDB | 81.2 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 81.08 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 81.08 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.54 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 80.25 | |
| PF08675 | 87 | RNA_bind: RNA binding domain; InterPro: IPR014789 | 80.02 |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=480.75 Aligned_cols=539 Identities=41% Similarity=0.698 Sum_probs=459.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001064 83 EDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG 162 (1167)
Q Consensus 83 ~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~ 162 (1167)
...+|..+..+..++++|+.|+...... ..++.+|.+|+.+|..||.|.+||.+||+++.+.|+.+++.++|+|||..
T Consensus 31 ~~~~we~~~~~~~~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a 108 (577)
T KOG1258|consen 31 SLDYWEILSNDSLDFDAWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA 108 (577)
T ss_pred hhhHhhccccchhcccchHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4568899999999999999999987763 56799999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHH
Q 001064 163 VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRY 242 (1167)
Q Consensus 163 ~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~ 242 (1167)
.|.|+++|+.|+.+.....++.+..|.+|++|+..+|.++.|+.||+.||+||..++++.++..+|+|+|++|..++..+
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHhhhC--CCccchhhhccccccCCccccccCCccccCcchHH-HHHHHHHHHH
Q 001064 243 FSSFKEFAASRPLSELRTAEEVDAAAVAVAAA--PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE-ELEKYIAVRE 319 (1167)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~--~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~-~~~~~i~~~~ 319 (1167)
|..|..+.+++++..+...++...++.++-.. ...... ..+....++..+..+... +++.. ...+++..++
T Consensus 189 f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~-----~~e~~~~~v~~~~~~s~~-l~~~~~~l~~~~~~~~ 262 (577)
T KOG1258|consen 189 FDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQE-----PLEELEIGVKDSTDPSKS-LTEEKTILKRIVSIHE 262 (577)
T ss_pred HHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccC-----hhHHHHHHHhhccCccch-hhHHHHHHHHHHHHHH
Confidence 99999999999999999998887766655432 111110 111122333433333322 23333 6678999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 399 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~ 399 (1167)
.+|+...+...+++.||..|+||||||+|+++.++.+|+.|++|.++.|+++++..+|+||+..|.+|.++|++|+.+++
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWME 342 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 479 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 479 (1167)
..|+.+-|..++.++++++.++.+.++++++.|.+.+|+++.|+.+|+++..++ |+...+-+.++.++.|+|+.+.+..
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 999999999999999999999999999999999999999999999999997776 9999999999999999999999985
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001064 480 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLV 559 (1167)
Q Consensus 480 ~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~ 559 (1167)
..+......++++.....+.++.+++++.+...++.+.|+.++.++++..|++..+|..+++|++..+...+.+.+..++
T Consensus 422 ~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~ 501 (577)
T KOG1258|consen 422 KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPID 501 (577)
T ss_pred HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHH
Confidence 33333334445555566778899999999999999999999999999999999999999999999998777777777777
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhh
Q 001064 560 DKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAK 636 (1167)
Q Consensus 560 eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~ 636 (1167)
...+....+.....+. -.+|++|...+|+.....+...++.+.|..++...+.+....+..-..|+++...
T Consensus 502 ~~~~~~~~~~~~~~~~------~~k~~ef~e~~g~~~~~~~~~~~~l~~~l~q~~~~~~~~~~~~s~~~~d~~~~~~ 572 (577)
T KOG1258|consen 502 WKELKMLIDFDDSRSS------TDKYIEFLEWFGIDHKGAQDERPHLKNFLIQRPDNFKKMDTLESRFTNDPSKEAL 572 (577)
T ss_pred HHHHhhhccccccccc------hHHHHHHHHhccchhHhHhhchHHHHHHHhhccchhcccchHHHHhcCChhhhcc
Confidence 7665543222211222 2239999999999999999999999998766544443434444444555555443
|
|
| >KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=476.29 Aligned_cols=389 Identities=35% Similarity=0.547 Sum_probs=231.1
Q ss_pred CCCCcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcc-cchhchHHHHHHHhcCCCcce--eEeeeeccccC
Q 001064 714 PPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST-ESASSMLDIHSLVISLNFTAI--EIKTINSLGSW 790 (1167)
Q Consensus 714 ~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~-~~~~~~~~i~~~~~~l~~~~~--~i~~~d~q~~~ 790 (1167)
+...|+.||+.||+|||++|++.|+.||+||.++|+++|.+.+.. ..+.+.+.|+++|++|+|..| +|++||+|.|+
T Consensus 9 ~~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S~ 88 (419)
T KOG0116|consen 9 PVPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQASL 88 (419)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhhc
Confidence 346678999999999999999999999999999999999887765 477889999999999999877 79999999999
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEeccCCCccCCCCCCCcCCccCCCCCCCCCCCCCCCc
Q 001064 791 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGL 870 (1167)
Q Consensus 791 ~~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1167)
++||+|+|+|.|++++. +.|+|+|||||+||+++|||+||||||+|+++..+. +..+ +. .+.++ ..
T Consensus 89 ~~GvvI~VtG~lt~~~~-~rRkF~QtFfLapq~~~yfVlNDiFRfvde~~~~e~-----~~~~--vp----~~~~~--~~ 154 (419)
T KOG0116|consen 89 EKGVVIMVTGYLTNKDG-PRRKFSQTFFLAPQEKGYFVLNDIFRFVDEEFEPEA-----NTDE--VP----EANPA--VV 154 (419)
T ss_pred cCCeEEEEEEEEEeCCC-cceEEEEEEEEeecCCceEEEechhhhccccccccc-----cccc--CC----CCCcc--ee
Confidence 99999999999999996 799999999999999999999999999998761111 0000 00 00000 00
Q ss_pred CCCCccchhhhhccccccccCCccCCCCCCCCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001064 871 AASDYVLEEEAREYVSSVHIEDDATDNYSLPEQQQ-DEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEP 949 (1167)
Q Consensus 871 ~~~~~~~~e~~~e~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 949 (1167)
......+ ...+++.+.+.+++.. +..+. ...++.. ..+....++.++.......+. .++. .+..+.
T Consensus 155 -~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~V~~~~~~-~~~~~~~~~~~ee~v~~~~~~-~~p~----~~~~~~ 221 (419)
T KOG0116|consen 155 -VSVEKAS-QLVEAVVESEPEPEPE-----PKAEDEVEVPEEA-TVEDEAKEKTKEELVIQQTVS-EAPA----APQGDA 221 (419)
T ss_pred -ecccccc-cccccccccCCCCccc-----ccccCceeccccc-cccccccccCchhhccccccc-CCCc----cccccc
Confidence 0000000 0000000000000000 00000 0000000 000000000000000000000 0000 013445
Q ss_pred cccchhhhhhhcccCCCCccccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 001064 950 QRKTYASILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEG 1029 (1167)
Q Consensus 950 ~p~s~A~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1167)
+.++||+++..+....++... ...+.+. .+. .+|...|.+++... ++.+. ....+.+...-....
T Consensus 222 ~~~s~asv~~~~~~~~~~~~~-~~~p~~~-~~~--~~p~~~~~~~~~s~--~~~p~---------~~~~~~n~~~~~~~~ 286 (419)
T KOG0116|consen 222 PKKSFASVVKVLKKSAAVQQS-KGSPPQI-QPQ--QQPSTKPQAERQSK--PPSPV---------RESKSGNSNNQEPRA 286 (419)
T ss_pred cchhhhhhhhhccccccccee-ccCCCcc-ccc--cCCccCcchhhccC--CCCcc---------ccccccccCCcceee
Confidence 688999998776544333111 1000011 000 00111111000000 00000 000000111112223
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
.+.+|||+|||.+++.++|+++|+.||.|+..+|.++.+. ++..+||||+|++.++++.||.++...|+|++|.|++++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~-~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPG-GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccC-CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 4566999999999999999999999999999999888743 444599999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001064 1110 PNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRG 1145 (1167)
Q Consensus 1110 ~~~~~~~~g~~~g~grg~~~~~~~rg~~g~~~~gr~ 1145 (1167)
+..++.+..+++.++++|+++++||+++++||++|+
T Consensus 366 ~~~~g~~~~~~~~~~~~g~~~~~gr~~~~~~gg~~~ 401 (419)
T KOG0116|consen 366 PGFRGNGNNRSGRGNRGGGRGPGGRGRGGGRGGGRG 401 (419)
T ss_pred ccccccccCcccccCCCCCCCCCCCCCCCCCCCCcC
Confidence 865543321112223344444455555554444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=446.77 Aligned_cols=480 Identities=21% Similarity=0.352 Sum_probs=411.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 87 WNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 87 ~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
++.|+.||.|.++|+.|++.++. ..++++|..||+++..||..+.+|+.|++.|++.++|+.++++|.|||... .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-Ln 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LN 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hh
Confidence 67799999999999999999986 499999999999999999999999999999999999999999999999987 89
Q ss_pred HHHHHHHHHHHHhhcCCHHH----HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHh
Q 001064 167 VDIWLHYCIFAINTYGDPET----IRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILE 233 (1167)
Q Consensus 167 ~~lw~~ya~~~~~~~~~~~~----Ar~~feral~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~A~~iy~r~l~ 233 (1167)
+|||.+|+.+..+++++... ..+.|+.++..+|.|+.|..||..|+.|+.. +++++.+|++|+|+|.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999987776654 4556999999999999999999999999874 4689999999999999
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
.|+.+++.+|++|..|++..+. -..++
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~-----------------------------------------------------~tarK 192 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINI-----------------------------------------------------ITARK 192 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHH-----------------------------------------------------HHHHH
Confidence 9999999999999998654210 01133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC----hhhHHHHHHHHHHHHHcCC--------hHHHHHHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS----VTELENWHNYLDFIERDGD--------FNKVVKLYERCL 381 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld----~~~~~~W~~y~~~~e~~g~--------~~~a~~~yeral 381 (1167)
++.-+...|+.+....+-+....++++|.-+.|+|.. -.++++|+++|+|+..++- ..|+..+|++||
T Consensus 193 ~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~l 272 (656)
T KOG1914|consen 193 FIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCL 272 (656)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH
Confidence 5555555666666666666667788888888888765 4578999999999865532 248999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC---HHHHHH
Q 001064 382 IACANYPEYWIRYVLCMEASGS--------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD---IDGARA 444 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~~g~--------------~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~---~~~A~~ 444 (1167)
...++++++|+.|+.++...++ .+++.++|++++......+..+++.++++++..-+ .+....
T Consensus 273 l~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~ 352 (656)
T KOG1914|consen 273 LYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHE 352 (656)
T ss_pred HHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHH
Confidence 9999999999999999988877 78999999999998877888899999999987666 777888
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 524 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~k 524 (1167)
+|++++....-+..-+|+.+.++-+|...++.||.+|.+|-+.... .-.+++.-|.+++.+.+|.+-|.+||+-
T Consensus 353 ~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~------~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 353 IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT------RHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC------cchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 8988744334444557999999999999999999999999886532 1357777788888889999999999999
Q ss_pred HHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001064 525 SLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDR 604 (1167)
Q Consensus 525 al~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r 604 (1167)
+|+++++++.+...|++|....++. .++|.+|||++.+ ++++++.++||++|++||+.+||+.++.++++|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd---~N~R~LFEr~l~s------~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDD---NNARALFERVLTS------VLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcc---hhHHHHHHHHHhc------cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999999999998774 4589999999986 277899999999999999999999999999999
Q ss_pred HHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCC
Q 001064 605 HARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPS 643 (1167)
Q Consensus 605 ~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~ 643 (1167)
+..+|+.. .+... .+....+|||+++++|||+..
T Consensus 498 ~~~af~~~---qe~~~--~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 498 RFTAFPAD---QEYEG--NETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred HHHhcchh---hcCCC--ChHHHHHHHHhhcccccccHH
Confidence 99999953 12222 256778999999999999976
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=420.65 Aligned_cols=516 Identities=22% Similarity=0.321 Sum_probs=405.5
Q ss_pred CCcccCCCCCCCccCCCCcccccccCCCCc----------------------hHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001064 51 NATSTENGTSLGIESGAAAGQELVDGSAMS----------------------GEEDRLWNIVKANSSDFSAWTALLEETE 108 (1167)
Q Consensus 51 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~a~~~l~~~l~~nP~d~~aw~~L~~~~~ 108 (1167)
...+|+|+.|+++ ||+++|+|+++..-+ .....|+..|+.|..+...|..+++..+
T Consensus 7 ~~~~vknktpa~v--qItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEe 84 (677)
T KOG1915|consen 7 KAAKVKNKTPAPV--QITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEE 84 (677)
T ss_pred chhhccCCCCCcc--eecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999998 999999999752111 1136789999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHH
Q 001064 109 KLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIR 188 (1167)
Q Consensus 109 ~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar 188 (1167)
. ++++.+||++|+++|..+-.+..+|++||+++++.++++.|+.+++|++...|.-..+|+.|+-++. .+|++..||
T Consensus 85 s--q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE-~LgNi~gaR 161 (677)
T KOG1915|consen 85 S--QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE-MLGNIAGAR 161 (677)
T ss_pred h--HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH-HhcccHHHH
Confidence 7 5899999999999999999999999999999999999999999999999999999999999999887 799999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Q 001064 189 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAA 268 (1167)
Q Consensus 189 ~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~ 268 (1167)
++|+|.+...|. ...|..||+||++.+++++||.||+|.+-..|. -.-|..|..|+..+..-. ..
T Consensus 162 qiferW~~w~P~----eqaW~sfI~fElRykeieraR~IYerfV~~HP~--v~~wikyarFE~k~g~~~---------~a 226 (677)
T KOG1915|consen 162 QIFERWMEWEPD----EQAWLSFIKFELRYKEIERARSIYERFVLVHPK--VSNWIKYARFEEKHGNVA---------LA 226 (677)
T ss_pred HHHHHHHcCCCc----HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc--HHHHHHHHHHHHhcCcHH---------HH
Confidence 999999997775 489999999999999999999999998875433 233445555554433211 11
Q ss_pred HHhhhCCCccchhh-----------------hccccc--cCCccccccCCccccCcchHHHH-HHHHHHHHHHHHHHHHH
Q 001064 269 VAVAAAPSETGAEV-----------------KANEEE--VQPDATEQTSKPVSAGLTEAEEL-EKYIAVREEMYKKAKEF 328 (1167)
Q Consensus 269 ~~~~~~~~e~~~~~-----------------~~~e~~--~~p~~~e~~~~~~~~~~~~~~~~-~~~i~~~~~~y~~~~~~ 328 (1167)
+.+|+...+..++. +..+.. ++.-+++.+++. .++.+ .+|+.. ++.|....-.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~------raeeL~k~~~~f-EKqfGd~~gI 299 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG------RAEELYKKYTAF-EKQFGDKEGI 299 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------cHHHHHHHHHHH-HHHhcchhhh
Confidence 12222222221110 000000 011123333322 12222 233322 3333333333
Q ss_pred HHHHH-----HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---------HHHHHH
Q 001064 329 DSKII-----GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---------EYWIRY 394 (1167)
Q Consensus 329 ~~a~~-----~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---------~~w~~y 394 (1167)
+++|. .||+.++ .+|-+++.|+.|+.+++..|+.++++.+|+||+...|-.. -+|++|
T Consensus 300 Ed~Iv~KRk~qYE~~v~--------~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVS--------KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred HHHHhhhhhhHHHHHHH--------hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 44333 4888887 6778899999999999999999999999999998877433 389999
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHhhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------
Q 001064 395 VLCMEA-SGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLV--------------------- 449 (1167)
Q Consensus 395 a~~l~~-~g~~e~A~~vl~rA~~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a--------------------- 449 (1167)
+.+.+- ..+.+.++.+|++++++.|++ +..+|+++|.|+.++.++..|++++..+
T Consensus 372 alyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 987753 678999999999999998653 6799999999999998888887765532
Q ss_pred -----------hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH-HHHHHHHHHHHHhCCHHH
Q 001064 450 -----------HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM-LYAQYSRFLHLVSRNAEK 517 (1167)
Q Consensus 450 -----------~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~-l~~~~a~~~~~~~g~~~~ 517 (1167)
+++..|.++.+|.+|+.++..+|+.|+|+.+|+-|+.... .+.|. ||..|++|+.. .|.+++
T Consensus 452 efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-----ldmpellwkaYIdFEi~-~~E~ek 525 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA-----LDMPELLWKAYIDFEIE-EGEFEK 525 (677)
T ss_pred hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-----cccHHHHHHHhhhhhhh-cchHHH
Confidence 3678899999999999999999999999999999998762 44565 58999999887 999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhHhhCCC--h-----------hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 001064 518 ARQILVDSLDHVQLSKPLLEALIHFESIQSS--P-----------KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCV 584 (1167)
Q Consensus 518 Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~--~-----------~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~ 584 (1167)
||.+|++.|+..++.+ +|.+|+.||.+... . ..+..+|++|++|.....+.. +++.|..+++.
T Consensus 526 aR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~---~KeeR~~LLEa 601 (677)
T KOG1915|consen 526 ARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST---PKEERLMLLEA 601 (677)
T ss_pred HHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 9999999999999987 99999999996521 1 146789999999987755443 47899999999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 585 FLEFLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 585 ~l~fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
|.+||..+|+...++.|..++.+.++.
T Consensus 602 w~~~E~~~G~~~d~~~V~s~mPk~vKK 628 (677)
T KOG1915|consen 602 WKNMEETFGTEGDVERVQSKMPKKVKK 628 (677)
T ss_pred HHHHHHhcCchhhHHHHHHhccHHHHh
Confidence 999999999999999999999888764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=323.22 Aligned_cols=427 Identities=18% Similarity=0.218 Sum_probs=342.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 117 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 117 ~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
+-|+-|+..|..+-.+...|++|++++..++++.+|+.+|+|||.....++.||+.|+.+++ .+..+..||.+++||+.
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHH
Confidence 45788888999998999999999999999999999999999999999999999999999999 67899999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCC
Q 001064 197 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPS 276 (1167)
Q Consensus 197 ~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~ 276 (1167)
..|. -..+|.+|+.+|...|++.-||.||+|-++..|. ...|.+|..|+... .++ ..++.+|+.+-
T Consensus 136 ~lPR---VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~--eqaW~sfI~fElRy--kei-------eraR~IYerfV 201 (677)
T KOG1915|consen 136 ILPR---VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD--EQAWLSFIKFELRY--KEI-------ERARSIYERFV 201 (677)
T ss_pred hcch---HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHh--hHH-------HHHHHHHHHHh
Confidence 7775 5799999999999999999999999999997444 34556666553321 111 11122333211
Q ss_pred ccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHH
Q 001064 277 ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN 356 (1167)
Q Consensus 277 e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~ 356 (1167)
- ...+..+|.+|... -.+.+....++.+|++++.- +. -+...-.+
T Consensus 202 ~--------------------------~HP~v~~wikyarF----E~k~g~~~~aR~VyerAie~--~~---~d~~~e~l 246 (677)
T KOG1915|consen 202 L--------------------------VHPKVSNWIKYARF----EEKHGNVALARSVYERAIEF--LG---DDEEAEIL 246 (677)
T ss_pred e--------------------------ecccHHHHHHHHHH----HHhcCcHHHHHHHHHHHHHH--hh---hHHHHHHH
Confidence 1 11234456565433 24566778889999999972 11 11111223
Q ss_pred HHHHHHHHHHcCChHHHH--------------------------------------------HHHHHHHHhcCCCHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVV--------------------------------------------KLYERCLIACANYPEYWI 392 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~--------------------------------------------~~yeral~~~p~~~~~w~ 392 (1167)
...++.|++..+.+++|+ .-|+..+..+|.+.+.|+
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWf 326 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHH
Confidence 444444544443333333 345666666788889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhcc--------ChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcCCC----hHH
Q 001064 393 RYVLCMEASGSMDLAHNALARATHVFVKR--------LPEIHLFAARFKEQ-NGDIDGARAAYQLVHTETSPG----LLE 459 (1167)
Q Consensus 393 ~ya~~l~~~g~~e~A~~vl~rA~~~~~p~--------~~~l~~~~a~~~e~-~g~~~~A~~~~~~a~~~~~P~----~~~ 459 (1167)
.|..+.+..|+.+..+.+|+|||...||. .--+|+.|+.+++. ..|.+.++++|+.+ +++.|. ...
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~-l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC-LDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhhcCcccchHHH
Confidence 99999999999999999999999977663 34588888888764 78999999999998 778887 568
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 539 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~ 539 (1167)
+|+.++.++.|+.++..|+.++-.||-..|. ..++-.|+.++.. +++++..|++|++-|+..|.+...|..|
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElq-L~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQ-LREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHH-HhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 9999999999999999999999999999874 4588899999887 9999999999999999999999999999
Q ss_pred HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 540 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 540 ~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+.||..+++ .|.+|.+|+-|++... .+..+.+|+.|++||-..|..+..+++++|+.+.-+..
T Consensus 478 aElE~~Lgd---tdRaRaifelAi~qp~-------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 478 AELETSLGD---TDRARAIFELAISQPA-------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHHhhh---HHHHHHHHHHHhcCcc-------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 999999987 6779999999988643 34556799999999999999999999999999886543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=302.01 Aligned_cols=460 Identities=17% Similarity=0.242 Sum_probs=359.8
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
+++...+-+|+.-++.||.|+-+|+.|+++++. ++..++.|+.|++++.-||.-..+|..|..-|...+++..++.+|
T Consensus 22 ~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~t--q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf 99 (660)
T COG5107 22 DNIHGDELRLRERIKDNPTNILSYFQLIQYLET--QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLF 99 (660)
T ss_pred cCCCchHHHHHHHhhcCchhHHHHHHHHHHHhh--hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHH
Confidence 345555668999999999999999999999997 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHH
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYG-----DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWS 222 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~-----~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~---------~~~~~ 222 (1167)
-|||... .+.+||..|+.+....+. .-..+.+.|+..+..++.++.+..+|..|..|+.. +++++
T Consensus 100 ~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 100 GRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred HHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 9999976 899999999999985432 22456778999999999999999999999999863 67899
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccc
Q 001064 223 RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVS 302 (1167)
Q Consensus 223 ~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~ 302 (1167)
.+|.+|+|+|..|..+++.+|++|..|+.+.+- ..+
T Consensus 179 ~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~----------~Ta---------------------------------- 214 (660)
T COG5107 179 KIRNGYMRALQTPMGNLEKLWKDYENFELELNK----------ITA---------------------------------- 214 (660)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHHHHHH----------HHH----------------------------------
Confidence 999999999999999999999999998654210 000
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-c---CCCChhhHHHHHHHHHHHHHcC-----C--hH
Q 001064 303 AGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFH-V---KPLSVTELENWHNYLDFIERDG-----D--FN 371 (1167)
Q Consensus 303 ~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~-v---~pld~~~~~~W~~y~~~~e~~g-----~--~~ 371 (1167)
++++....-+|+.+...-+.+..+.+.+++--|. . ..........|.++|+|+...+ + ..
T Consensus 215 ---------rKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~q 285 (660)
T COG5107 215 ---------RKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQ 285 (660)
T ss_pred ---------HHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHH
Confidence 0111111111222111111122222222210000 0 0011122356999999987553 1 34
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 451 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 451 (1167)
|+-.+|++++...+..+++|+.|..++...++.+.|+....|++. .+|.+++.++..++...+-++...+|+++..
T Consensus 286 Ri~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~----~spsL~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 286 RIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE----MSPSLTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc----CCCchheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 888999999999999999999999999999999999999988874 5667999999999999998888888886411
Q ss_pred h-----------------cCC------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 452 E-----------------TSP------------GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 452 ~-----------------~~P------------~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
. -+| ...-+|+-+.+.-.|...++.|+.+|-++-+..- ..+++|+
T Consensus 362 ~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~------~~h~vyi 435 (660)
T COG5107 362 DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI------VGHHVYI 435 (660)
T ss_pred HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC------CCcceee
Confidence 0 011 1122477788888888889999999999877641 1245777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELS 582 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~ 582 (1167)
..|.+++...|+..-|.+||+-+|.++|++..+...|..|.+..++. ..+|.+||.++..- ...+.++||
T Consensus 436 ~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde---~naraLFetsv~r~-------~~~q~k~iy 505 (660)
T COG5107 436 YCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDE---ENARALFETSVERL-------EKTQLKRIY 505 (660)
T ss_pred eHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcH---HHHHHHHHHhHHHH-------HHhhhhHHH
Confidence 77777888899999999999999999999999999999999998874 45899999876542 233557899
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 583 CVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 583 ~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+.|++||.++||+..+-.+++|+.+++|..
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 999999999999999999999999999864
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=293.12 Aligned_cols=511 Identities=17% Similarity=0.187 Sum_probs=352.7
Q ss_pred ccchhhhccC-ccccccCCcCCcccccCCC-------CcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCC
Q 001064 23 ATSENEAMGS-SQAAGYNSMNGNVVNEAGN-------ATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANS 94 (1167)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP 94 (1167)
+.+|+++-|- .-|.++.|++-..+.-++. +..|..-+|..+-.-|+...+-..+|.++.|...+.+-.+..|
T Consensus 237 svtgqtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cp 316 (913)
T KOG0495|consen 237 SVTGQTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECP 316 (913)
T ss_pred cCCCCcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCC
Confidence 3344555554 4555555543333333332 3334555555554444444443333555555555555555555
Q ss_pred CCHHHHHHHHHHHHh--------------------------hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 001064 95 SDFSAWTALLEETEK--------------------------LAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~--------------------------~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~ 148 (1167)
.+.|.|..-+++... + +.+...-.++++++|+..|.+.++|+.-.+++ +
T Consensus 317 rSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dL-E~~~~~K~RVlRKALe~iP~sv~LWKaAVelE----~ 391 (913)
T KOG0495|consen 317 RSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADL-ESDTKNKKRVLRKALEHIPRSVRLWKAAVELE----E 391 (913)
T ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhh-hhHHHHHHHHHHHHHHhCCchHHHHHHHHhcc----C
Confidence 555555554443221 0 11222233444444444444444444444433 3
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
.+.|+-++.||++.+|.|.+||+.|++++. ++.|+.++.++-+.+|++ ..||..-+.+|+..|+.+.+.+|.
T Consensus 392 ~~darilL~rAveccp~s~dLwlAlarLet-----YenAkkvLNkaRe~iptd---~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 392 PEDARILLERAVECCPQSMDLWLALARLET-----YENAKKVLNKAREIIPTD---REIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHH-----HHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHhcCCHHHHHHHH
Confidence 333555666666666666666666655543 555666666666655553 556666666666666666666666
Q ss_pred HHHHhc-----chhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 229 TRILEN-----PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 229 ~r~l~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
.|.|.. -..+.+.++++......... ..+... + ..++++.- +|
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags---v~TcQA-I--i~avigig------------------vE-------- 511 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGS---VITCQA-I--IRAVIGIG------------------VE-------- 511 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCC---hhhHHH-H--HHHHHhhc------------------cc--------
Confidence 666542 12244555555444422210 011110 0 01111110 00
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
.+..+.-+..-...+.+.+-++-++.+|-.+|+ .+|..-.+|...+.|++..|..+....++++++..
T Consensus 512 ----eed~~~tw~~da~~~~k~~~~~carAVya~alq--------vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 512 ----EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--------VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred ----cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--------hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 011111112223455666777778888999988 67777889999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
||..+.+|+.|+.-....|+.-.|+.++..|++.+ |++.+||++...++.++..++.||.+|.++. . ......+|++
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar-~-~sgTeRv~mK 656 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR-S-ISGTERVWMK 656 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh-c-cCCcchhhHH
Confidence 99999999999998888899999999999999988 8899999999999999999999999999983 3 4456789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 543 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e 543 (1167)
++.+++-+++.++|+.+++++|+.+| +.+.+|+.++.++.. .++++.||..|..+++++|++..||..++.+|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp------~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFP------DFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCC------chHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 99999999999999999999999985 457899999999876 99999999999999999999999999999999
Q ss_pred hhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 544 SIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 544 ~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
...+. +-.+|.+++++.-.+|.+. .+|..-+.+|...|+.+.+..+..|+.+-+|..
T Consensus 730 Ek~~~---~~rAR~ildrarlkNPk~~---------~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 730 EKDGQ---LVRARSILDRARLKNPKNA---------LLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHhcc---hhhHHHHHHHHHhcCCCcc---------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 98875 5679999999999999887 599999999999999999999999999988864
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-29 Score=283.80 Aligned_cols=487 Identities=16% Similarity=0.233 Sum_probs=356.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CCHHHHHHHHH
Q 001064 86 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV--------GSMDKVVEVYE 157 (1167)
Q Consensus 86 l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~--------~~~e~A~~l~e 157 (1167)
|+.-|-.||.+...|..++..... ....+..-+||++|+.+|.++.+|..|.+.-..+ ..++..-.+|+
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~---sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~e 92 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAG---SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFE 92 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHcc---CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Confidence 444466799999999999998775 4678889999999999999999999999543322 23788999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001064 158 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 237 (1167)
Q Consensus 158 raL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~ 237 (1167)
|||......+.+|+.|++|++ ..+++...|.+|++||...|...++ +||..|+.|..+.+-.+-+.++|+|.|+..|.
T Consensus 93 r~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH~-rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~ 170 (835)
T KOG2047|consen 93 RCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQHD-RIWDLYLKFVESHGLPETSIRVYRRYLKVAPE 170 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhhc-cchHHHHHHHHhCCChHHHHHHHHHHHhcCHH
Confidence 999977788999999999999 6799999999999999988865444 89999999999999999999999999999887
Q ss_pred hHHHHHHHHHH----------HHhcCCCcccc-----cHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccc
Q 001064 238 QLDRYFSSFKE----------FAASRPLSELR-----TAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVS 302 (1167)
Q Consensus 238 ~~~~~~~~~~~----------~~~~~~~~~~~-----~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~ 302 (1167)
..+.+..-... +..-.+.+... +..+.-...-++.... ...++.-.+|.+.+.-+
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~----------p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN----------PDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC----------cchhcccCHHHHHHhhc
Confidence 65444321111 10000000000 0000000000000000 01111112333333322
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc---------------
Q 001064 303 AGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD--------------- 367 (1167)
Q Consensus 303 ~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~--------------- 367 (1167)
.+.+ +.+..++..+.+.|...+.+++|+..|+++|.... .-.+.-.++..|+.|++..
T Consensus 241 ~rft--Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-----tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 241 RRFT--DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM-----TVRDFTQIFDAYAQFEESCVAAKMELADEESGNE 313 (835)
T ss_pred ccCc--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-----ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccCh
Confidence 2332 34566777778899999999999999999997321 1112223455666665311
Q ss_pred -----------------------------------------------CChHHHHHHHHHHHHh-cCC-----CHHHHHHH
Q 001064 368 -----------------------------------------------GDFNKVVKLYERCLIA-CAN-----YPEYWIRY 394 (1167)
Q Consensus 368 -----------------------------------------------g~~~~a~~~yeral~~-~p~-----~~~~w~~y 394 (1167)
|+..+.+..|..|+.. +|. --.+|..+
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHH
Confidence 2233455556666554 332 22599999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---------------
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--------------- 456 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--------------- 456 (1167)
|.+++..|+++.|+.+|++|++..=+ +...+|..||.++.++.+++.|+++++++. . .|.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~-vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-H-VPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-c-CCCchhhhhhcCCCcHHH
Confidence 99999999999999999999885423 346899999999999999999999999872 2 222
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc--C
Q 001064 457 ----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV--Q 530 (1167)
Q Consensus 457 ----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~--p 530 (1167)
++.+|..|+++++..|-++..+.+|++.|.+-- ..|.+.++||.|+.. ..-++++.++|++++.++ |
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri------aTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI------ATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCc
Confidence 346799999999999999999999999999863 348899999999876 778999999999999976 6
Q ss_pred CCHHHHHHHHHhHh-hCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhh
Q 001064 531 LSKPLLEALIHFES-IQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 609 (1167)
Q Consensus 531 ~~~~l~~~~~~~e~-~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~ 609 (1167)
+-.++|..|+.--. ..+. ...+.+|.|||+||.. +|++..+.|+..|..||+.+|-.....++++|....+
T Consensus 545 ~v~diW~tYLtkfi~rygg-~klEraRdLFEqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGG-TKLERARDLFEQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred cHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 66789987765333 3332 3478899999999994 5778899999999999999999999999999976666
Q ss_pred CC
Q 001064 610 LP 611 (1167)
Q Consensus 610 ~~ 611 (1167)
+.
T Consensus 617 ~~ 618 (835)
T KOG2047|consen 617 KE 618 (835)
T ss_pred CH
Confidence 53
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=288.45 Aligned_cols=441 Identities=16% Similarity=0.148 Sum_probs=383.4
Q ss_pred cCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHH
Q 001064 41 MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRR 120 (1167)
Q Consensus 41 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~ 120 (1167)
--||+.+|.+--..|-..+|.....-..++.++-+..+++.....-..+++.+|.-.+++..|+.++.. .|++..|..
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke--rg~~~~al~ 137 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE--RGQLQDALA 137 (966)
T ss_pred hccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH--hchHHHHHH
Confidence 368888888777788889999988888888888887889998888899999999999999999999876 489999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 121 VYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 121 ~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.|+.++++.|.+.++|+.++..+..+|+.+.|..+|..+|+++|+......+...++. ..|++.+|...|.+||...+
T Consensus 138 ~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk-a~Grl~ea~~cYlkAi~~qp- 215 (966)
T KOG4626|consen 138 LYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK-AEGRLEEAKACYLKAIETQP- 215 (966)
T ss_pred HHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH-hhcccchhHHHHHHHHhhCC-
Confidence 9999999999999999999999999999999999999999999999999888888888 68999999999999999555
Q ss_pred CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccch
Q 001064 201 DYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGA 280 (1167)
Q Consensus 201 d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~ 280 (1167)
.-...|..++-....+|++-.++.-|.++++++|...+.+++....+.....+++.....+- ++...
T Consensus 216 --~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r-----Al~lr------ 282 (966)
T KOG4626|consen 216 --CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR-----ALNLR------ 282 (966)
T ss_pred --ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH-----HHhcC------
Confidence 34678999999999999999999999999999999999999988877443332222211111 00000
Q ss_pred hhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH
Q 001064 281 EVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY 360 (1167)
Q Consensus 281 ~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y 360 (1167)
| .... ...-..-+|.+.+..+-||..|+++|. ++|...+.+.++
T Consensus 283 ----------p--------------n~A~----a~gNla~iYyeqG~ldlAI~~Ykral~--------~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 283 ----------P--------------NHAV----AHGNLACIYYEQGLLDLAIDTYKRALE--------LQPNFPDAYNNL 326 (966)
T ss_pred ----------C--------------cchh----hccceEEEEeccccHHHHHHHHHHHHh--------cCCCchHHHhHH
Confidence 0 0000 011113367888999999999999998 788888999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHH
Q 001064 361 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 440 (1167)
Q Consensus 361 ~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~ 440 (1167)
+..+...|+..++...|.+||..||++++....++.++...|.+++|..+|.++++++ |.+...+..+|.++.++|+++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHH
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHH
Q 001064 441 GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ 520 (1167)
Q Consensus 441 ~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~ 520 (1167)
+|+..|+.+ +++.|...+++..+++.+..+|+.+.|+.+|.+||...| +..+.+.+++.+ ++..|++.+|+.
T Consensus 406 ~Ai~~Ykea-lrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP------t~AeAhsNLasi-~kDsGni~~AI~ 477 (966)
T KOG4626|consen 406 DAIMCYKEA-LRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP------TFAEAHSNLASI-YKDSGNIPEAIQ 477 (966)
T ss_pred HHHHHHHHH-HhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc------HHHHHHhhHHHH-hhccCCcHHHHH
Confidence 999999998 899999999999999999999999999999999999984 557788889888 455999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhH
Q 001064 521 ILVDSLDHVQLSKPLLEALIHFE 543 (1167)
Q Consensus 521 i~~kal~~~p~~~~l~~~~~~~e 543 (1167)
-|+.||++.|+.+..+-+++.-.
T Consensus 478 sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 478 SYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHccCCCCchhhhHHHHHH
Confidence 99999999999987766555433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-28 Score=275.65 Aligned_cols=479 Identities=16% Similarity=0.193 Sum_probs=378.1
Q ss_pred ccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH
Q 001064 54 STENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY 133 (1167)
Q Consensus 54 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~ 133 (1167)
++.+..|.++-+-+-+.-+- .+......-++++|+..|.+.-.|..-..+.. -+.||.++.++++.-|.+.
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~------~~darilL~rAveccp~s~ 410 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLWKAAVELEE------PEDARILLERAVECCPQSM 410 (913)
T ss_pred HHHHhCCCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHHHHHHhccC------hHHHHHHHHHHHHhccchH
Confidence 34455566653322222222 23445566788999999999999987666543 2349999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC--------------
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVG-------------- 199 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g-------------- 199 (1167)
++|+.|++++ .|+.|++++.++-+..|.+..+|+.-+.++. .+|+.+.+..+..|+|....
T Consensus 411 dLwlAlarLe----tYenAkkvLNkaRe~iptd~~IWitaa~LEE-~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 411 DLWLALARLE----TYENAKKVLNKAREIIPTDREIWITAAKLEE-ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 9999999988 7889999999999999999999999999988 78999998888888873211
Q ss_pred ------------------------CCCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCC
Q 001064 200 ------------------------TDYL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRP 254 (1167)
Q Consensus 200 ------------------------~d~~-s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~ 254 (1167)
.+-. ...-|..-.......+.++-||.||..+|+..+.. ..+|.....|+.++.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k-~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK-KSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch-hHHHHHHHHHHHhcC
Confidence 1100 12345555555555677888999999999975543 456666666665542
Q ss_pred CcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 255 LSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIG 334 (1167)
Q Consensus 255 ~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~ 334 (1167)
+.|....+....... - ..++. ++.+....+-.+++.-.++..
T Consensus 565 -----t~Esl~Allqkav~~----------------------~--------pkae~---lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 565 -----TRESLEALLQKAVEQ----------------------C--------PKAEI---LWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred -----cHHHHHHHHHHHHHh----------------------C--------Ccchh---HHHHHHHHHHhcCCcHHHHHH
Confidence 122221111110110 0 11222 222233345566888888888
Q ss_pred HHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 335 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 335 ~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
+..++. .+|++.++|+.-+.++..+..+++|+.+|.++... .-.+.+|++++.++..++..++|+.+++++
T Consensus 607 l~~af~--------~~pnseeiwlaavKle~en~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~ 677 (913)
T KOG0495|consen 607 LDQAFE--------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEA 677 (913)
T ss_pred HHHHHH--------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHH
Confidence 888887 67888999999999999999999999999999987 455789999999999999999999999999
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 494 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~ 494 (1167)
++.+ |++..+|++++.++++.++++.|+..|..- ++..|+.+.+|+.++.++++.|++-+|+.+|+++.-.+|.+
T Consensus 678 lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G-~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~--- 752 (913)
T KOG0495|consen 678 LKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQG-TKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN--- 752 (913)
T ss_pred HHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhc-cccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc---
Confidence 9999 899999999999999999999999999997 78899999999999999999999999999999999888654
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCC--------------h-----------
Q 001064 495 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS--------------P----------- 549 (1167)
Q Consensus 495 ~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~--------------~----------- 549 (1167)
..+|+...+++.+ .|+.+.|..+..+||+.+|.+..||-.-+.|+-..+. +
T Consensus 753 ---~~lwle~Ir~ElR-~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ---ALLWLESIRMELR-AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred ---chhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 6699999999998 9999999999999999999999999888887755321 1
Q ss_pred --hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 550 --KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 550 --~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
..++.+|..|+|++...+++. ++|-.|..|+..||+.+.-++|+++....-|.+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~G---------D~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNG---------DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccc---------hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 235778888999999999887 589999999999999999999999999988765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-27 Score=304.80 Aligned_cols=514 Identities=11% Similarity=0.006 Sum_probs=333.1
Q ss_pred cccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhh
Q 001064 34 QAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQD 113 (1167)
Q Consensus 34 ~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~ 113 (1167)
.++..+...|+.++|++.+.++....|.........+..+...++++.++..|+++++.+|.+...+..++..+.+. +
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~ 445 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS--G 445 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc--C
Confidence 46666777788888887777777766665544555555555557777777777777777777777766666666553 5
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
++++|+.++++++..+|.+...|..++.++...|++++|+++|++++...|.+...|..++..+. ..|++++|+..|++
T Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-QEGNPDDAIQRFEK 524 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777766666 56677777777777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhh
Q 001064 194 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAA 273 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~ 273 (1167)
++...+. ...+|..++.+....+++++|+.+|++++...+.+...++.....+.....+ +++......+..
T Consensus 525 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~ 595 (899)
T TIGR02917 525 VLTIDPK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL------KKALAILNEAAD 595 (899)
T ss_pred HHHhCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH------HHHHHHHHHHHH
Confidence 7764433 3556666666666666677777777776666554444443333222221111 111111111111
Q ss_pred CCC-----------------ccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 274 APS-----------------ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 336 (1167)
Q Consensus 274 ~~~-----------------e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e 336 (1167)
... +....+...+.. ++. ...+.. .+.....+|...+++++|+..|+
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~-------~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL-----LAL-------QPDSAL----ALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHh-------CCCChH----HHHHHHHHHHHcCCHHHHHHHHH
Confidence 100 000000000000 000 000001 11223345566667777777777
Q ss_pred hhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 337 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
++++ .+|.+...|..++..+...|+++.++.+++++....|.....|..++.++...|++++|...|++++.
T Consensus 660 ~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 660 RALE--------LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHh--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7766 55555667777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 417 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
.. |+. ..+..++.++...|++++|...++++ ++..|++..++...+.++...|++++|..+|+++++..|+
T Consensus 732 ~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------ 802 (899)
T TIGR02917 732 RA-PSS-QNAIKLHRALLASGNTAEAVKTLEAW-LKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------ 802 (899)
T ss_pred hC-CCc-hHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------
Confidence 65 333 56666777777777777777777776 5667888888888888888888888888888888877653
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHH
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAA 576 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~ 576 (1167)
.+.++..++.++.. .|+ .+|+.+++++++..|++..++..++.+....+. .+.+..+|++++...+.++
T Consensus 803 ~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~~~------ 871 (899)
T TIGR02917 803 NAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE---ADRALPLLRKAVNIAPEAA------ 871 (899)
T ss_pred CHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCh------
Confidence 25566777776555 777 778888888888888888888777777766665 5667788888888776544
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001064 577 EREELSCVFLEFLGLFGDAQLIKKAEDRHA 606 (1167)
Q Consensus 577 ~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~ 606 (1167)
+++..+...+...|+.+.+.++++++.
T Consensus 872 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 872 ---AIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 477778888888888888888887764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-26 Score=303.87 Aligned_cols=520 Identities=12% Similarity=0.033 Sum_probs=405.0
Q ss_pred ccccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh
Q 001064 33 SQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ 112 (1167)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~ 112 (1167)
.+++..+...|+.++|+..+..+....+.........+..+...|++++++..|+++++.+|.+...|+.++..+...
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 410 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ-- 410 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--
Confidence 457778889999999999888888777776655555666666669999999999999999999999999999998874
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
++.++|++.|++++...|.....+..++..+.+.|++++|+.++++++...|.+..+|..++..+. ..|++++|+..|+
T Consensus 411 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~ 489 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL-GKGDLAKAREAFE 489 (899)
T ss_pred CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhh
Q 001064 193 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVA 272 (1167)
Q Consensus 193 ral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~ 272 (1167)
+++...+. ....|..++......++++.|..+|++++...+.+...+......+...... +++........
T Consensus 490 ~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~ 560 (899)
T TIGR02917 490 KALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE------EEAVAWLEKAA 560 (899)
T ss_pred HHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHH
Confidence 99985544 5678888999999999999999999999998776665555444333222211 22211111111
Q ss_pred hC-----------------CCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 273 AA-----------------PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 335 (1167)
Q Consensus 273 ~~-----------------~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~ 335 (1167)
.. ..+.......... .++ ....+. .++.....+|...+++++|+..|
T Consensus 561 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~-------~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNE-----AAD-------AAPDSP----EAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred HhCccchhHHHHHHHHHHHCCCHHHHHHHHHH-----HHH-------cCCCCH----HHHHHHHHHHHHcCCHHHHHHHH
Confidence 11 0111000000000 000 000111 12233355677778888888888
Q ss_pred HhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 336 ETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 336 e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
+++++ .++.+...|..++..+...|++++|+.+|++++..+|.+.+.|..++.++...|++++|..+++++.
T Consensus 625 ~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 625 KKLLA--------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHH--------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88887 5566677788888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC
Q 001064 416 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 495 (1167)
Q Consensus 416 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~ 495 (1167)
... |..+.++...+.++...|++++|...|+++ +...|++ ..+..++.++.+.|++++|...+++++...|+
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~----- 768 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA-LKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN----- 768 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH-HhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----
Confidence 776 677788888888888888888888888887 6667776 67777888888888999999999888887753
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCH
Q 001064 496 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANA 575 (1167)
Q Consensus 496 ~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~ 575 (1167)
.+.++..++.++.. .|++++|..+|+++++..|++...+..++.+....+. ..+...+++++...++++
T Consensus 769 -~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~~~~~~----- 837 (899)
T TIGR02917 769 -DAVLRTALAELYLA-QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKLAPNIP----- 837 (899)
T ss_pred -CHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhhCCCCc-----
Confidence 25677778877665 8999999999999999999998888887777776665 237778888888777665
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 576 AEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 576 ~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
.++..+...+...|+.+.+.+++++..+..+.
T Consensus 838 ----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 838 ----AILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777788888889999999999999988775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-26 Score=259.51 Aligned_cols=501 Identities=17% Similarity=0.232 Sum_probs=333.0
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001064 81 GEEDRLWNIVKANSSDFSAWTALLEETEKL------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 154 (1167)
Q Consensus 81 ~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~------~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 154 (1167)
+-.-.|+++++.-|.++..|+.+++.-... ...-+...-.+|+++|-.--.++.+|+.|..+.++++++.+.+.
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRR 123 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHH
Confidence 345678999999999999999999554431 12445677889999999888899999999999999999999999
Q ss_pred HHHHHHhccC--CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC--------------------------------
Q 001064 155 VYERAVQGVT--YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT-------------------------------- 200 (1167)
Q Consensus 155 l~eraL~~~P--~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~-------------------------------- 200 (1167)
+|+|+|...| -+.++|-.|++|+. ..+-++-+.++|+|-|+..|.
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~-~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~ 202 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVE-SHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV 202 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHH-hCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh
Confidence 9999999887 46799999999998 566666777777766521110
Q ss_pred --------------------CC---------------------CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--chh
Q 001064 201 --------------------DY---------------------LSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN--PIQ 237 (1167)
Q Consensus 201 --------------------d~---------------------~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~--p~~ 237 (1167)
++ .-..||..++++..+.|.+++|+.+|+.++.. --.
T Consensus 203 sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr 282 (835)
T KOG2047|consen 203 SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR 282 (835)
T ss_pred hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh
Confidence 00 01456777788888889999999999999986 445
Q ss_pred hHHHHHHHHHHHHhcCCCcccccH---------HHHHHHHHHhhhCCCccchh-hhccccccCCccc-------------
Q 001064 238 QLDRYFSSFKEFAASRPLSELRTA---------EEVDAAAVAVAAAPSETGAE-VKANEEEVQPDAT------------- 294 (1167)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~---------ee~~~~~~~~~~~~~e~~~~-~~~~e~~~~p~~~------------- 294 (1167)
++..+|+.|..|+.+..-..+..+ +.-..++.+-++.+.+.... .+...-.-.|.-+
T Consensus 283 DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~ 362 (835)
T KOG2047|consen 283 DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGN 362 (835)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCC
Confidence 788888888887653211111100 00000000001110000000 0000000000000
Q ss_pred --cc---------cCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHH
Q 001064 295 --EQ---------TSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 363 (1167)
Q Consensus 295 --e~---------~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~ 363 (1167)
+. ...|..+ ......+.....+.|...++.+.|+..|+++++.||-.|.- -..+|..+++.
T Consensus 363 ~~~~i~tyteAv~~vdP~ka----~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d----La~vw~~waem 434 (835)
T KOG2047|consen 363 AAEQINTYTEAVKTVDPKKA----VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED----LAEVWCAWAEM 434 (835)
T ss_pred hHHHHHHHHHHHHccCcccC----CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH----HHHHHHHHHHH
Confidence 00 0000000 00112233444667788888888888888888866644321 13577788877
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH
Q 001064 364 IERDGDFNKVVKLYERCLIACANY-------------------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 424 (1167)
Q Consensus 364 ~e~~g~~~~a~~~yeral~~~p~~-------------------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~ 424 (1167)
+.+..+++.|+.+.++|+.. |.. ..+|..|+++++..|-++..+.+|+|.+.+- =--|.
T Consensus 435 Elrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr-iaTPq 512 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR-IATPQ 512 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCHH
Confidence 77777788888888877765 333 2378888888888888888888888887754 34677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhc--CCChHHHHHHHHH-HHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHH
Q 001064 425 IHLFAARFKEQNGDIDGARAAYQLVHTET--SPGLLEAIIKHAN-MERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPM 499 (1167)
Q Consensus 425 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~--~P~~~~~~~~~a~-~e~r~g--~~e~A~~~~~kAl~~~~~~~~~~~~~~ 499 (1167)
+-+.||.|++.+.-++++.++|++. +.+ .|+..++|..|.. |-.|.| ++++|+.+|++||+..|+. ..-.
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErg-I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~----~aKt 587 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERG-ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE----HAKT 587 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcC-CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH----HHHH
Confidence 7778888888888888888888875 333 5778888877765 333444 5788999999999877632 1235
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH------------------------------------HhhcCCCH--HHHHHHHH
Q 001064 500 LYAQYSRFLHLVSRNAEKARQILVDS------------------------------------LDHVQLSK--PLLEALIH 541 (1167)
Q Consensus 500 l~~~~a~~~~~~~g~~~~Ar~i~~ka------------------------------------l~~~p~~~--~l~~~~~~ 541 (1167)
+|+.|+.|+.+ .|-...|.+||++| ++.-|++. .+-..|+.
T Consensus 588 iyLlYA~lEEe-~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 588 IYLLYAKLEEE-HGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 78888888776 57666666655554 44444443 44447888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 542 FESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 542 ~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
||.++|. ++++|.+|..+-+. ++|..-.++|+.|.+||-.|||.++++.|++-.+.+
T Consensus 667 lEtklGE---idRARaIya~~sq~-------~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsv 723 (835)
T KOG2047|consen 667 LETKLGE---IDRARAIYAHGSQI-------CDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSV 723 (835)
T ss_pred Hhhhhhh---HHHHHHHHHhhhhc-------CCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888776 78899998876443 344455689999999999999999999998655444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=270.23 Aligned_cols=432 Identities=14% Similarity=0.104 Sum_probs=299.4
Q ss_pred cccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 001064 71 QELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMD 150 (1167)
Q Consensus 71 ~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e 150 (1167)
+++. .|++.++++...-+-..||.+-+....+.....+. .+.++...--..+++..|...+.+-.+++++...|+++
T Consensus 57 ~~yq-~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~--~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 57 RLYQ-GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG--SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHh-ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc--cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence 3444 49999999999999999999999888777777653 56777777777889999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 151 KVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 151 ~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
.|..+|+.++++.|..+|.|+..+..+. +.|+.+.|...|..+|+..|. -.........+.+..|++.+|...|.+
T Consensus 134 ~al~~y~~aiel~p~fida~inla~al~-~~~~~~~a~~~~~~alqlnP~---l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 134 DALALYRAAIELKPKFIDAYINLAAALV-TQGDLELAVQCFFEALQLNPD---LYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHhcCchhhHHHhhHHHHHH-hcCCCcccHHHHHHHHhcCcc---hhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999999999999999999999 789999999999999996554 345566778888899999999999999
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHH
Q 001064 231 ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 310 (1167)
Q Consensus 231 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~ 310 (1167)
+++..+. +...|..
T Consensus 210 Ai~~qp~-fAiawsn----------------------------------------------------------------- 223 (966)
T KOG4626|consen 210 AIETQPC-FAIAWSN----------------------------------------------------------------- 223 (966)
T ss_pred HHhhCCc-eeeeehh-----------------------------------------------------------------
Confidence 9998663 1122211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH
Q 001064 311 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY 390 (1167)
Q Consensus 311 ~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~ 390 (1167)
++-+|+.+++...+|..|+++++ +||..++.+.+++..+...+.+++|+..|+||+...|++..+
T Consensus 224 -------Lg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a 288 (966)
T KOG4626|consen 224 -------LGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA 288 (966)
T ss_pred -------cchHHhhcchHHHHHHHHHHhhc--------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh
Confidence 12234445555556666666666 666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
+-.++.++..+|.+|.|+..|+||+++. |+++..+..+|..+...|+.++|...|.++ +.+.|++++....++++...
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka-L~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA-LRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH-HHhCCccHHHHHHHHHHHHH
Confidence 6666666666666666666666666655 666666666666666666666666666666 56666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChh
Q 001064 471 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK 550 (1167)
Q Consensus 471 ~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~ 550 (1167)
+|+++.|..+|++|++.+|. ......+++-++ +..|++++|...|+.||.+.|.-.+-+.++..-...+++
T Consensus 367 ~~~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~-kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~-- 437 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPE------FAAAHNNLASIY-KQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD-- 437 (966)
T ss_pred hccchHHHHHHHHHHhhChh------hhhhhhhHHHHH-HhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh--
Confidence 66666666666666666642 233445555553 336666666666666666666555555444443333333
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 551 QIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 551 ~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
++.+.++|+|++..+|.-. +.........++-|++..+...++-..++-|+
T Consensus 438 -v~~A~q~y~rAI~~nPt~A---------eAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 438 -VSAAIQCYTRAIQINPTFA---------EAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred -HHHHHHHHHHHHhcCcHHH---------HHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 4556666666666554322 33444444445555555555555555555444
|
|
| >KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=220.70 Aligned_cols=116 Identities=33% Similarity=0.554 Sum_probs=107.2
Q ss_pred CcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcce--eEeeeeccccCCCce
Q 001064 717 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGV 794 (1167)
Q Consensus 717 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~--~i~~~d~q~~~~~~i 794 (1167)
.+..||..||++||.+|+.+|..|..||.+. ||++|+|..++|+.. |.+|+.||||++| .|+++||||+++|||
T Consensus 5 ~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~-S~LTfEGqq~qG~~~---IveKl~sLpFqkiqh~IttvD~QPt~~g~i 80 (126)
T KOG2104|consen 5 VYEAVAKAFVQHYYSLFDNDRSQLGALYIDT-SMLTFEGQQIQGKDA---IVEKLTSLPFQKIQHSITTVDSQPTPDGGI 80 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCchhHhhhhhccc-ceeeEcchhhcchHH---HHHHHhcCChhhhhceeeecccccCCCCcE
Confidence 3478999999999999999999999999997 799999999998865 5889999999987 599999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeee-CCeEEEEcceEEecc
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLD 837 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~~ 837 (1167)
||+|+|+++.+++ ++.+|+|+|+|.+. .++|||.|||||+--
T Consensus 81 lv~V~G~Lk~dEd-~~~~FsQvF~L~~n~~~~~~v~ndiFRLn~ 123 (126)
T KOG2104|consen 81 LVMVVGQLKLDED-PILRFSQVFLLKPNIQGSYYVFNDIFRLNL 123 (126)
T ss_pred EEEEeeeeeeccC-CccceeeEEEEeEcCCCCEEEEeeeEEEec
Confidence 9999999999975 99999999999988 489999999999853
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-25 Score=291.33 Aligned_cols=514 Identities=10% Similarity=0.010 Sum_probs=354.1
Q ss_pred ccccCCcCCcccccCCCCcccCCCCCCCccCCCC-cccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhh
Q 001064 35 AAGYNSMNGNVVNEAGNATSTENGTSLGIESGAA-AGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQD 113 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~ 113 (1167)
+|.++...|+.++|+..|.++....|......+. ...+....+++++++..|+++++.+|.+..+++.|+.++.. .+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~--~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS--SG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc--cC
Confidence 4557778999999999999998887766421110 01111123789999999999999999999999999999976 47
Q ss_pred hHHHHHHHHHHHHHhC----------------------------------CCCHHHH--------------------HHH
Q 001064 114 NIVKIRRVYDAFLAEF----------------------------------PLCYGYW--------------------KKY 139 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~----------------------------------P~~~~~W--------------------~~~ 139 (1167)
+.++|+..|++++... |....+- ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 8888888888775543 3222110 012
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHH----------
Q 001064 140 ADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD---------- 209 (1167)
Q Consensus 140 a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~---------- 209 (1167)
+..+...|++++|+..|+++|+..|.+.++|..++..+. ..|++++|+..|+++++..+.+... .-|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~-~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNR-DKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccch-hHHHHHHHhhhHHH
Confidence 445667899999999999999999999999999999988 7899999999999999977654322 1222
Q ss_pred --HHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhcccc
Q 001064 210 --KYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEE 287 (1167)
Q Consensus 210 --~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~ 287 (1167)
..+......++++.|+..|++++.+.+.+...++.....+..... .+++......+...
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~------~~eA~~~y~~aL~~------------- 414 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD------YAAAERYYQQALRM------------- 414 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHh-------------
Confidence 123345567899999999999999988877776665554433322 22222111111110
Q ss_pred ccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCC-CChhhHHHHHHHHHHHHH
Q 001064 288 EVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP-LSVTELENWHNYLDFIER 366 (1167)
Q Consensus 288 ~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~p-ld~~~~~~W~~y~~~~e~ 366 (1167)
.| .....+ ..+..+|. .+..++|+..++.......-.+.. ...-....|...+..+..
T Consensus 415 --~p--------------~~~~a~----~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 415 --DP--------------GNTNAV----RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred --CC--------------CCHHHH----HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 00 011111 11223453 346677777666543210000000 000113456667788888
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
.|++++|+.+|++++...|+++.+++.++.++...|++++|+.+|+++++.. |+++..++.++.++...++.++|+..+
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877 788999998888888888888888777
Q ss_pred HHHh---------------------------------------hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 447 QLVH---------------------------------------TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 487 (1167)
Q Consensus 447 ~~a~---------------------------------------~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~ 487 (1167)
+++. ++..|++..+++.++.++.++|++++|+.+|+++++.
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6531 1235666667777777777777777777777777777
Q ss_pred hhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 488 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 488 ~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
.|++ +.++..++.++.. .|++++|+++|+++++..|++..++..++......++ .+.+..+|++++...+
T Consensus 633 ~P~~------~~a~~~la~~~~~-~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 633 EPGN------ADARLGLIEVDIA-QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGD---TAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC---HHHHHHHHHHHhhhCc
Confidence 6532 5567777777655 7777777777777777777777776666665555554 4556777777776544
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001064 568 DSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 606 (1167)
Q Consensus 568 ~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~ 606 (1167)
+.+. ......++.....+....|+.+.+...+++..
T Consensus 703 ~~~~---~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 703 SQPP---SMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cCCc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3321 01123355555666777777777777776664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=288.06 Aligned_cols=517 Identities=10% Similarity=-0.012 Sum_probs=364.3
Q ss_pred ccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHH--------------
Q 001064 35 AAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAW-------------- 100 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw-------------- 100 (1167)
.+.+....++.+.|...+.++...+|+.+........++...|++++|...++++++.+|.+.++|
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 456777899999999999999999999887777777777777999999999999999999998876
Q ss_pred --HHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001064 101 --TALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKY-ADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 177 (1167)
Q Consensus 101 --~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~-a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~ 177 (1167)
..+++.+.. .+++++|.++|++++...|.+..+=..| ..+....++.++|++.|+++++.+|.+..+++.++.++
T Consensus 114 ~~l~~A~ll~~--~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLAT--TGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHh--CCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344455554 4799999999999999998886532222 22233458999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHH-----------------------------------------------
Q 001064 178 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDK----------------------------------------------- 210 (1167)
Q Consensus 178 ~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~----------------------------------------------- 210 (1167)
. ..++.++|+..|++++.....+.....+|..
T Consensus 192 ~-~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 192 F-SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred H-ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 8 6899999999999886532111001111110
Q ss_pred ----HHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccc
Q 001064 211 ----YIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANE 286 (1167)
Q Consensus 211 ----y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e 286 (1167)
.+......++++.|+..|+++|+..|.+.+.++.....+..... .+++....+......
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~------~~eA~~~l~~Al~~~----------- 333 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD------RARAVAQFEKALALD----------- 333 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhC-----------
Confidence 12223345789999999999999888877777766655544322 223222111111110
Q ss_pred cccCCccccccCCccccCcchHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHH
Q 001064 287 EEVQPDATEQTSKPVSAGLTEAEELEK--------YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWH 358 (1167)
Q Consensus 287 ~~~~p~~~e~~~~~~~~~~~~~~~~~~--------~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~ 358 (1167)
|+ . .....|.. ....+..++...+++++|+..|++++. ++|.+...|.
T Consensus 334 ----p~-------~-----~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~--------~~P~~~~a~~ 389 (1157)
T PRK11447 334 ----PH-------S-----SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ--------VDNTDSYAVL 389 (1157)
T ss_pred ----CC-------c-----cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHH
Confidence 00 0 00011111 111234567788999999999999998 7788888999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------------------
Q 001064 359 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM---------------------------------------- 398 (1167)
Q Consensus 359 ~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l---------------------------------------- 398 (1167)
.++..+...|++++|+..|++++...|.+..+|..++.++
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999988776655433
Q ss_pred --HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001064 399 --EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476 (1167)
Q Consensus 399 --~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 476 (1167)
...|++++|+.+|++++++. |+++.+++.++.++.+.|++++|+.+|+++ +++.|++...++.++.++...++.++
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a-l~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL-AQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 34688888999999999887 788888889999999999999999999997 67789888888888877777788888
Q ss_pred HHHHHHHHHHhhhCCC----------------------------------ccCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 477 AFSLYEQAIAIEKGKE----------------------------------HSQTLPMLYAQYSRFLHLVSRNAEKARQIL 522 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~----------------------------------~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~ 522 (1167)
|+.+|+++........ ..+..+.++..++.++.. .|++++|+.+|
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~-~g~~~~A~~~y 626 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ-RGDYAAARAAY 626 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH-cCCHHHHHHHH
Confidence 8777765321110000 011223455566666554 67777777777
Q ss_pred HHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 001064 523 VDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAE 602 (1167)
Q Consensus 523 ~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~ 602 (1167)
+++++..|++...+..++.+....++ .+.+..+|++++...+++. .++..........|+.+.+.+++
T Consensus 627 ~~al~~~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~~~---------~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 627 QRVLTREPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATANDSL---------NTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCCCh---------HHHHHHHHHHHhCCCHHHHHHHH
Confidence 77777777777777766666666554 4456666776666554443 23444444445566766666666
Q ss_pred HHHHhhhC
Q 001064 603 DRHARLFL 610 (1167)
Q Consensus 603 ~r~~~~~~ 610 (1167)
+++.+..+
T Consensus 695 ~~al~~~~ 702 (1157)
T PRK11447 695 NRLIPQAK 702 (1157)
T ss_pred HHHhhhCc
Confidence 66665554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-24 Score=264.29 Aligned_cols=413 Identities=12% Similarity=0.028 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 176 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~ 176 (1167)
...+..++..+.+ .+++++|++.|+++|...|+ ..+|..++..+.+.|++++|++.|+++|...|.+.+.|+..+..
T Consensus 127 a~~~k~~G~~~~~--~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYR--NKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456688888877 48999999999999999996 67899999999999999999999999999999999999999998
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh------------------
Q 001064 177 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ------------------ 238 (1167)
Q Consensus 177 ~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~------------------ 238 (1167)
+. ..|++++|+..|..++...+.+ ...+...+...+.. .+...+..+++..+.+
T Consensus 204 ~~-~lg~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~~-----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 204 YD-GLGKYADALLDLTASCIIDGFR--NEQSAQAVERLLKK-----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HH-HcCCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 88 7899999999888776643332 22222222221111 0111112222211110
Q ss_pred ---------------HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 239 ---------------LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 239 ---------------~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
...+...+..+... ......+++..+....... .
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~---~~~~~y~~A~~~~~~al~~----~------------------------ 324 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPES---KADESYEEAARAFEKALDL----G------------------------ 324 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHh---hhhhhHHHHHHHHHHHHhc----C------------------------
Confidence 00111111110000 0001112221111000000 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
... .........+..+|...+++++|+..|+++|. ++|.....|..++..+...|++++|+..|++++..
T Consensus 325 -~~~-~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 325 -KLG-EKEAIALNLRGTFKCLKGKHLEALADLSKSIE--------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred -CCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000 01111334446678889999999999999998 78888889999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
+|.++++|+.++.++...|++++|+..|++++.+. |++...|+.++.++.+.|++++|+..|+++ +++.|++..+|..
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a-l~~~P~~~~~~~~ 472 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRC-KKNFPEAPDVYNY 472 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCChHHHHH
Confidence 99999999999999999999999999999999988 888999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 543 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e 543 (1167)
++.++..+|++++|+..|++|+.+.|...........+...+..++...|++++|+.+|+++++.+|++...+..++.+.
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999987532111111123333444444468999999999999999999998888888888
Q ss_pred hhCCChhHHHHHHHHHHHHhhcC
Q 001064 544 SIQSSPKQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 544 ~~~~~~~~~~~ar~l~eral~~~ 566 (1167)
...+. ++.+..+|++++...
T Consensus 553 ~~~g~---~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 553 LQQGD---VDEALKLFERAAELA 572 (615)
T ss_pred HHccC---HHHHHHHHHHHHHHh
Confidence 88776 677889999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-22 Score=251.41 Aligned_cols=427 Identities=14% Similarity=0.128 Sum_probs=317.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~ 213 (1167)
..++..+..+.+.|++++|++.|+++|...|+ ..+|...+..+. ..|++++|+..|+++|+.. +.....|...+.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~-~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~a~ 202 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHN-ALGDWEKVVEDTTAALELD---PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcC---CCCHHHHHHHHH
Confidence 45777899999999999999999999999986 678988888888 6899999999999999954 445788999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhcchhhH---HHHHHHH-H--------HHHhcCCCcccccHHHHHHHHHHhhhCCCccchh
Q 001064 214 YEYMQQEWSRVAMIYTRILENPIQQL---DRYFSSF-K--------EFAASRPLSELRTAEEVDAAAVAVAAAPSETGAE 281 (1167)
Q Consensus 214 ~e~~~~~~~~A~~iy~r~l~~p~~~~---~~~~~~~-~--------~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~ 281 (1167)
....+++++.|...|..++.++..+. ..++... . ......+ ..+....... .++..+... .
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~----~~~~~~~~~-~- 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVG----NYLQSFRPK-P- 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHH----HHHHHccCC-c-
Confidence 99999999999999988877643321 1222111 1 1101110 0000000000 000000000 0
Q ss_pred hhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHH
Q 001064 282 VKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYL 361 (1167)
Q Consensus 282 ~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~ 361 (1167)
..+. +....+.... ... ..+ .+..........+.+++|+..|++++.. ..+++.....|..++
T Consensus 276 --~~~~--~~~~~~~~~~-----~~~-~~~--~l~~~~~e~~~~~~y~~A~~~~~~al~~-----~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 276 --RPAG--LEDSNELDEE-----TGN-GQL--QLGLKSPESKADESYEEAARAFEKALDL-----GKLGEKEAIALNLRG 338 (615)
T ss_pred --chhh--hhcccccccc-----ccc-chH--HHHHHHHHhhhhhhHHHHHHHHHHHHhc-----CCCChhhHHHHHHHH
Confidence 0000 0000000000 000 000 1111101113456889999999999972 124567778899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH
Q 001064 362 DFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 362 ~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
.++...|++++|+..|++++..+|.+...|+.++.++...|++++|+..|++++++. |+++.+|+..+.++...|++++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999987 8899999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 442 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 521 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i 521 (1167)
|+..|+++ ++++|++...|+.++.++.++|++++|+.+|++++...|. .+.++..++.++.. .|++++|++.
T Consensus 418 A~~~~~ka-l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~-~g~~~~A~~~ 489 (615)
T TIGR00990 418 AGKDYQKS-IDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE------APDVYNYYGELLLD-QNKFDEAIEK 489 (615)
T ss_pred HHHHHHHH-HHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-ccCHHHHHHH
Confidence 99999998 7899999999999999999999999999999999998864 37788889998776 9999999999
Q ss_pred HHHHHhhcCCCHHHHHHH--------HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001064 522 LVDSLDHVQLSKPLLEAL--------IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 593 (1167)
Q Consensus 522 ~~kal~~~p~~~~l~~~~--------~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 593 (1167)
|++++++.|.+...+... +.++ .. .+.+.+..+|++++...+++. .++..........|
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~-~~---~~~~eA~~~~~kAl~l~p~~~---------~a~~~la~~~~~~g 556 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQ-WK---QDFIEAENLCEKALIIDPECD---------IAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHH-Hh---hhHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHcc
Confidence 999999998754333211 1121 11 236778999999998876553 36777888888999
Q ss_pred CHHHHHHHHHHHHhhhCC
Q 001064 594 DAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 594 d~~~~~~v~~r~~~~~~~ 611 (1167)
+.+.+.+.+++..++.+.
T Consensus 557 ~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 557 DVDEALKLFERAAELART 574 (615)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999988654
|
|
| >cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-25 Score=214.66 Aligned_cols=115 Identities=43% Similarity=0.659 Sum_probs=104.0
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcC-CcccchhchHHHHHHHhcCC--CcceeEeeeeccccCCCce
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDG-DSTESASSMLDIHSLVISLN--FTAIEIKTINSLGSWNGGV 794 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g-~~~~~~~~~~~i~~~~~~l~--~~~~~i~~~d~q~~~~~~i 794 (1167)
|.+||+.||++||++|+++|+.|++||+++|.|+ |+| .. ..|.++|.++|++|| ..+++|.++|||++.+++|
T Consensus 2 ~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~-~~~~~~---~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~~i 77 (119)
T cd00780 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLS-REGMKQ---VTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSGGV 77 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEE-ECCceE---ecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCCCE
Confidence 5789999999999999999999999999987665 677 43 446677899999999 5577899999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEecc
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 837 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 837 (1167)
+|+|+|.|+.++. ++++|+|+|+|.+++++|||.||||||++
T Consensus 78 li~V~G~~~~~~~-~~~~F~q~F~L~~~~~~~~I~nD~fr~~~ 119 (119)
T cd00780 78 IVMVTGSLKLDEQ-PPRKFSQTFVLAPQNGGYFVLNDIFRFVD 119 (119)
T ss_pred EEEEEEEEEECCC-CceeEeEEEEEEecCCeEEEEeeEEEecC
Confidence 9999999999875 79999999999999999999999999985
|
This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=244.13 Aligned_cols=355 Identities=12% Similarity=-0.001 Sum_probs=300.7
Q ss_pred cccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 001064 69 AGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 69 ~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~ 148 (1167)
+..++.. |+.+.++..++.++..+|.+.++++.|+..... .|++++|...|++++..+|++..+|..++.++...|+
T Consensus 49 ~~~~~~~-g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~--~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 49 AIACLRK-DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA--SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHhc-CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 3344444 999999999999999999999999999977765 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
+++|+..|++++...|.+..+|...+..+. ..|++++|...|++++...|. +...+..... +...|++++|..+|
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~-~~g~~~eA~~~~~~~~~~~P~---~~~a~~~~~~-l~~~g~~~eA~~~~ 200 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLV-LMDKELQAISLARTQAQEVPP---RGDMIATCLS-FLNKSRLPEDHDLA 200 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCChHHHHHHHHHHHHhCCC---CHHHHHHHHH-HHHcCCHHHHHHHH
Confidence 999999999999999999999999999988 789999999999999886554 3455544433 56679999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchH
Q 001064 229 TRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEA 308 (1167)
Q Consensus 229 ~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~ 308 (1167)
++++...+......+
T Consensus 201 ~~~l~~~~~~~~~~~----------------------------------------------------------------- 215 (656)
T PRK15174 201 RALLPFFALERQESA----------------------------------------------------------------- 215 (656)
T ss_pred HHHHhcCCCcchhHH-----------------------------------------------------------------
Confidence 998776321111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhc
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK----VVKLYERCLIAC 384 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~----a~~~yeral~~~ 384 (1167)
......+...+++++|+..|++++. ++|.....|..++..+...|++++ |+..|++++..+
T Consensus 216 -------~~l~~~l~~~g~~~eA~~~~~~al~--------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 216 -------GLAVDTLCAVGKYQEAIQTGESALA--------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred -------HHHHHHHHHCCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 0111234566778888999999998 677778899999999999999885 899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
|.+..+|..++.++...|++++|+..|++++.+. |+++.++..++.++.+.|++++|+..|+++ ++.+|++...+...
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~a-l~~~P~~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQL-AREKGVTSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCccchHHHHHH
Confidence 9999999999999999999999999999999987 889999999999999999999999999998 77899988777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+.++...|++++|+..|+++++..|.. + ..++++|+..|.++++..+..
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~--------~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASH--------L-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhh--------c-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 888889999999999999999998642 0 234567888888888866444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-23 Score=260.47 Aligned_cols=410 Identities=11% Similarity=-0.001 Sum_probs=268.6
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
|+.+++++.+.+++..+|.+..+|..++..+... +++.+|..+|+++|+.+|.+..+|..++.++...|++++|+.++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5666666666666666677766677777666653 56667777777777777777777777777777777777777777
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 236 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~ 236 (1167)
+++++..|.+.. |..++..+. ..|++++|...|++++...|. ...++..++..+...+..+.|...+++++..|.
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~ 181 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYK-RAGRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPA 181 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHH
Confidence 777777777766 666666666 556777777777777764433 456666666666666666666666666555321
Q ss_pred h----hHHHHHHHHHHHHhcCCCccccc---HHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001064 237 Q----QLDRYFSSFKEFAASRPLSELRT---AEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309 (1167)
Q Consensus 237 ~----~~~~~~~~~~~~~~~~~~~~~~~---~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~ 309 (1167)
. ............ ......+... .+++......+...... .| ....
T Consensus 182 ~~~~l~~~~~~~~~r~~-~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~------------~p--------------~~~~ 234 (765)
T PRK10049 182 EKRDLEADAAAELVRLS-FMPTRSEKERYAIADRALAQYDALEALWHD------------NP--------------DATA 234 (765)
T ss_pred HHHHHHHHHHHHHHHhh-cccccChhHHHHHHHHHHHHHHHHHhhccc------------CC--------------ccch
Confidence 1 001111111110 0000000000 01111000000000000 00 0000
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-
Q 001064 310 ELEKY-IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY- 387 (1167)
Q Consensus 310 ~~~~~-i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~- 387 (1167)
..... +.... .+...+++.+|+..|+++++. .+..|.....| +++.+...|++++|+.+|++++...|..
T Consensus 235 ~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 235 DYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred HHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 11111 11112 224557889999999998873 22235555566 3777888999999999999998877655
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc------------c--ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 388 ---PEYWIRYVLCMEASGSMDLAHNALARATHVFVK------------R--LPEIHLFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 388 ---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p------------~--~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
.+.+..++..+...|++++|+.++++++...|+ + ...+++.++.++...|++++|+.+|+++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a- 385 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL- 385 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 356777777778889999999999999887631 1 2346778888999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 451 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 451 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
+...|++..+|+.++.++...|++++|+.+|++++...|++ +.++...+..... .|++++|..+++++++..|
T Consensus 386 l~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~------~~l~~~~a~~al~-~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 386 AYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN------INLEVEQAWTALD-LQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCC
Confidence 78899999999999999999999999999999999998643 5677777777665 8899999999999999999
Q ss_pred CCHHHH
Q 001064 531 LSKPLL 536 (1167)
Q Consensus 531 ~~~~l~ 536 (1167)
+++.+.
T Consensus 459 d~~~~~ 464 (765)
T PRK10049 459 QDPGVQ 464 (765)
T ss_pred CCHHHH
Confidence 988544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=245.67 Aligned_cols=420 Identities=11% Similarity=0.034 Sum_probs=308.8
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
++|.-+.-|..++.. .|+.++|+++|++++...|.....|..++.++.+.+++++|+.+|+++|...|.+.++|.
T Consensus 13 ~~~~~~~d~~~ia~~-----~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALW-----AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344455566666554 368899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
.++..+. ..+++++|+..+++++...|.+ .. |..++..+...++++.|...|+++++..|.+.+.++.....+..
T Consensus 88 ~la~~l~-~~g~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 88 GLILTLA-DAGQYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999888 6899999999999999966554 56 88899999999999999999999999988887776654443322
Q ss_pred cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHH---HHHHHHHH
Q 001064 252 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE---MYKKAKEF 328 (1167)
Q Consensus 252 ~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~---~y~~~~~~ 328 (1167)
... .+++.. .+..... .|+.. ...+.. ......+.. .....+++
T Consensus 163 ~~~------~e~Al~----~l~~~~~------------~p~~~---------~~l~~~--~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 163 NRL------SAPALG----AIDDANL------------TPAEK---------RDLEAD--AAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CCC------hHHHHH----HHHhCCC------------CHHHH---------HHHHHH--HHHHHHHhhcccccChhHHH
Confidence 211 111111 0110000 00000 000000 000000000 01122233
Q ss_pred ---HHHHHHHHhhhcCCCcccCCCC-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc
Q 001064 329 ---DSKIIGFETAIRRPYFHVKPLS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC---ANYPEYWIRYVLCMEAS 401 (1167)
Q Consensus 329 ---~~a~~~~e~al~r~~~~v~pld-~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~---p~~~~~w~~ya~~l~~~ 401 (1167)
++|+..|+.+++. +...|.. +.....+...+..+...+++++|+..|++++... |.+...|+ +.++...
T Consensus 210 ~~ad~Al~~~~~ll~~--~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~ 285 (765)
T PRK10049 210 AIADRALAQYDALEAL--WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHhh--cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhc
Confidence 6678888888752 0111111 1122233332333356689999999999999875 44555664 7778889
Q ss_pred CCHHHHHHHHHHHHHhhhccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-------------C--hHHHHH
Q 001064 402 GSMDLAHNALARATHVFVKRL----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSP-------------G--LLEAII 462 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P-------------~--~~~~~~ 462 (1167)
|+.++|+.+|++++... |.. ...+..++..+.+.|++++|+.+++++ ....| + ...+++
T Consensus 286 g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~-~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 286 HQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHT-INNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred CCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH-hhcCCceEeecCCCCCCCCchHHHHHH
Confidence 99999999999998765 433 345556666678899999999999997 55555 2 245678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 463 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 463 ~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
.++.++...|++++|+.+|++++...|.+ +.++..++.++.. .|++++|+++++++++..|++..++...+..
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~-~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASVLQA-RGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 88899999999999999999999998653 6799999998766 9999999999999999999999999988888
Q ss_pred HhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 543 ESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 543 e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.+..++ .+.+..++++++...|+++
T Consensus 437 al~~~~---~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 437 ALDLQE---WRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhCC---HHHHHHHHHHHHHhCCCCH
Confidence 887776 6778999999999988876
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-21 Score=235.99 Aligned_cols=371 Identities=10% Similarity=-0.033 Sum_probs=296.1
Q ss_pred CCCcccccccCCCCchHHHHHHHHHHhCCC---CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001064 66 GAAAGQELVDGSAMSGEEDRLWNIVKANSS---DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH 142 (1167)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~---d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~ 142 (1167)
.|.+-.+|.+ .+++.---.+...-+.... +.......+..... +|+..+|+.+++..+...|.+..++..++..
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~ 85 (656)
T PRK15174 9 KISPTTLLKQ-EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLR--KDETDVGLTLLSDRVLTAKNGRDLLRRWVIS 85 (656)
T ss_pred ccCchhhhhh-hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHh--cCCcchhHHHhHHHHHhCCCchhHHHHHhhh
Confidence 3444455554 5555533333333332222 22222233333332 5899999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHH
Q 001064 143 EARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWS 222 (1167)
Q Consensus 143 e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~ 222 (1167)
....|+++.|+..|++++...|.+.+.|...+..+. ..|++++|+..|++++...|. ...+|...+..+...|+++
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l~~Al~l~P~---~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLAEQAWLAFSG---NSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCChH
Confidence 999999999999999999999999999999999988 689999999999999996554 5788999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccc
Q 001064 223 RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVS 302 (1167)
Q Consensus 223 ~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~ 302 (1167)
.|...|++++...+.+...++..
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~--------------------------------------------------------- 184 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATC--------------------------------------------------------- 184 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH---------------------------------------------------------
Confidence 99999998887655543322210
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001064 303 AGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI 382 (1167)
Q Consensus 303 ~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~ 382 (1167)
..+...+++++|+..|+++++. .|.+ ....+...+..+...|++++|+..|++++.
T Consensus 185 -----------------~~l~~~g~~~eA~~~~~~~l~~-----~~~~--~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 185 -----------------LSFLNKSRLPEDHDLARALLPF-----FALE--RQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred -----------------HHHHHcCCHHHHHHHHHHHHhc-----CCCc--chhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0123446667777778887762 1111 122334445666789999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001064 383 ACANYPEYWIRYVLCMEASGSMDL----AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 383 ~~p~~~~~w~~ya~~l~~~g~~e~----A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
..|.++.+|+.++..+...|++++ |+..|++++.+. |++..++..++.++...|++++|+..|+++ ++++|++.
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a-l~l~P~~~ 318 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQS-LATHPDLP 318 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCH
Confidence 999999999999999999999985 899999999987 889999999999999999999999999998 78999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
.++..++.++.+.|++++|+..|++++...|.. +.++...+..+.. .|++++|+..|+++++..|++.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~------~~~~~~~a~al~~-~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVT------SKWNRYAAAALLQ-AGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999999999999999987642 3344555666555 9999999999999999998864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=238.66 Aligned_cols=537 Identities=11% Similarity=-0.041 Sum_probs=352.8
Q ss_pred cccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhH
Q 001064 36 AGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNI 115 (1167)
Q Consensus 36 ~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~ 115 (1167)
|..+...||.++|+..|.++...+|.+.+....+.+++...|++++++..++++++.+|.|...+..|+.+ ++.
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i------~~~ 124 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI------PVE 124 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh------ccC
Confidence 34455679999999999999999999999999999998888999999999999999999998888877655 366
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------------------HHHhCCHHHHHHH
Q 001064 116 VKIRRVYDAFLAEFPLCYGYWKKYADH----------------------------------------EARVGSMDKVVEV 155 (1167)
Q Consensus 116 ~~ar~~ye~~l~~~P~~~~~W~~~a~~----------------------------------------e~~~~~~e~A~~l 155 (1167)
.+|..+|+++++.+|++.++...++.. +.++++++.|+++
T Consensus 125 ~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 125 VKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 789999999999999998777655554 3334566667777
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-
Q 001064 156 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN- 234 (1167)
Q Consensus 156 ~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~- 234 (1167)
+.++++..|.+.+.+..+...++...++ +.+..+|...++ .+..+|..|+.++...|+.+.|..++++.=..
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk------~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF------TDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc------cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 7777777777777666666655521244 555555554222 24677777777777777777777666653222
Q ss_pred --chhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHhh---hCCCccch--hhhccccccCCccc--c-ccCCccc-
Q 001064 235 --PIQQLDRYFSSFKEFAAS-RPLSELRTAEEVDAAAVAVA---AAPSETGA--EVKANEEEVQPDAT--E-QTSKPVS- 302 (1167)
Q Consensus 235 --p~~~~~~~~~~~~~~~~~-~~~~~~~~~ee~~~~~~~~~---~~~~e~~~--~~~~~e~~~~p~~~--e-~~~~~~~- 302 (1167)
.+.+-.-+|...+..... .....+.. .....++..+. ....+... ....+ ....|... + ...-...
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTV-QFADNRQYVVGATLPVLLKEGQYDAAQKL-LATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhh-hhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcCCCcchHHHHHHhhcccc
Confidence 222333333322211110 00000000 00000011110 00000000 00000 00000000 0 0000000
Q ss_pred cCcchH-HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhcC-C----------------------------
Q 001064 303 AGLTEA-EELEKYIAV----------REEMYKKAKEFDSKIIGFETAIRR-P---------------------------- 342 (1167)
Q Consensus 303 ~~~~~~-~~~~~~i~~----------~~~~y~~~~~~~~a~~~~e~al~r-~---------------------------- 342 (1167)
....+. .+|+.+... ..-.....+++.+|...|+.+... .
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 000000 000000000 000001112222222222222210 0
Q ss_pred ----------------------------CcccCCCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH
Q 001064 343 ----------------------------YFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWI 392 (1167)
Q Consensus 343 ----------------------------~~~v~pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~ 392 (1167)
+-..-|.+|. +...|+.++.++.. ++.++|+..|.+++...|... ..+
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L 513 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHR 513 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHH
Confidence 0001124455 67889999888776 788889999999999988653 355
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001064 393 RYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 472 (1167)
Q Consensus 393 ~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 472 (1167)
.++..+...|++++|+..|++++... +. ...++..+.++.+.|++++|..+|+++ +++.|++..++..++....+.|
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~-p~-~~a~~~la~all~~Gd~~eA~~~l~qA-L~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHD-MS-NEDLLAAANTAQAAGNGAARDRWLQQA-EQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC-CC-cHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHhCC
Confidence 55666678999999999999987653 33 456788888899999999999999998 6788988877766665556679
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHH
Q 001064 473 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQI 552 (1167)
Q Consensus 473 ~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~ 552 (1167)
++++|+..|+++++..|. +.++..++.++.+ .|++++|...|++++++.|++..++..+..+....+. .
T Consensus 591 r~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~---~ 659 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS-------ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD---I 659 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---H
Confidence 999999999999999862 5688899988777 9999999999999999999999999988888777766 5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 553 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 553 ~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+.+..+|++++...|+++ +++..........|+.+.+...+++..++-|..
T Consensus 660 eeAi~~l~~AL~l~P~~~---------~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 660 AQSREMLERAHKGLPDDP---------ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 668889999999888776 588888888899999999999999999998864
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-20 Score=212.57 Aligned_cols=444 Identities=17% Similarity=0.190 Sum_probs=322.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hCCHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR---VGSMDKVV 153 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~---~~~~e~A~ 153 (1167)
+.....+..++..+..|++++.....|+.++.+. +++++.+..-..+-+.+|.++.+|+.|+.-+.. .++...+.
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~--~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKL--GDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHh--cchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 4567889999999999999999999999999985 799999999999999999999999999987763 36778899
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhc------CCHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHh---hhHHH
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTY------GDPETIRRLFERGLAYVGTDYL-SFPLWDKYIEYEYMQ---QEWSR 223 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~------~~~~~Ar~~feral~~~g~d~~-s~~lw~~y~~~e~~~---~~~~~ 223 (1167)
.+|+++|.. .+++.+|..|+.|..... ++++..|.+|+++|...|.++. ...||..|++|+... -+.+.
T Consensus 171 ~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~q 249 (881)
T KOG0128|consen 171 ELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQ 249 (881)
T ss_pred HHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999996 499999999999988532 4678999999999999998877 468999999999864 23466
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 224 VAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 224 A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
+..++.+.|..|.. .+.....|....+.+.+.
T Consensus 250 v~a~~~~el~~~~D-~~~~~~~~~~~sk~h~~~----------------------------------------------- 281 (881)
T KOG0128|consen 250 VIALFVRELKQPLD-EDTRGWDLSEQSKAHVYD----------------------------------------------- 281 (881)
T ss_pred HHHHHHHHHhccch-hhhhHHHHHHHHhcchHH-----------------------------------------------
Confidence 78889999998843 333322332221111000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
......+...++..+-+..|++.+. .++.....|+.|++|+.+.|++.+....++|++.-
T Consensus 282 ------------~~~~~~~~a~~~l~~~~~~~e~~~q--------~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 282 ------------VETKKLDDALKNLAKILFKFERLVQ--------KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred ------------HHhccHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 0000011112222222233666655 56677789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhcCCChHHHH
Q 001064 384 CANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG-ARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~-~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~-A~~~~~~a~~~~~P~~~~~~ 461 (1167)
.+...+.|+.|+.++.. ++-.+.+..++-|++..+ |....+|-.+-..+++.+.... ....+++.+.. -..++
T Consensus 342 ~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c-p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~ 416 (881)
T KOG0128|consen 342 MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC-PWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELH 416 (881)
T ss_pred ccccHHHHhhhhhhcccccccccccccccchhhcCC-chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHH
Confidence 99999999999998864 444456677888888765 6667777776655566554332 23333333111 11122
Q ss_pred HHHHHHHHHcC------CHHHHHHHHHHHHHhhhCCCc--cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 462 IKHANMERRLG------NLEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 462 ~~~a~~e~r~g------~~e~A~~~~~kAl~~~~~~~~--~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
..+..+..+.+ +++..++.|..|......-.. ....-.++..|+.+++...++.+.||.||...+.....+.
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i 496 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI 496 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH
Confidence 22322222222 456667777777776542110 1122346678899999989999999999999998877777
Q ss_pred H-HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 001064 534 P-LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 605 (1167)
Q Consensus 534 ~-l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~ 605 (1167)
. .|..|+.+|..+++ ...+|.++.+|+.... .+++..++++.|..||..+|+++.+..+..+.
T Consensus 497 ag~Wle~~~lE~~~g~---~~~~R~~~R~ay~~~~------~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 497 AGKWLEAINLEREYGD---GPSARKVLRKAYSQVV------DPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred HHHHHHHHhHHHHhCC---chhHHHHHHHHHhcCc------CchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 7 99999999999877 4457888888877643 33456789999999999999988776555444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-19 Score=199.73 Aligned_cols=502 Identities=12% Similarity=0.052 Sum_probs=336.8
Q ss_pred CCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC
Q 001064 50 GNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF 129 (1167)
Q Consensus 50 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~ 129 (1167)
...++-.|..|+++......++.-. .+......+-..++ ..++-+-+ .+++++|+++|..+|++.
T Consensus 81 ~k~~kkrn~~ps~~~gep~~~~~~a---~~~e~~~k~A~~lK----------~~GN~~f~--~kkY~eAIkyY~~AI~l~ 145 (606)
T KOG0547|consen 81 AKNKKKRNVYPSSPDGEPDEEQKKA---MLKEERLKYAAALK----------TKGNKFFR--NKKYDEAIKYYTQAIELC 145 (606)
T ss_pred ccCcccccCCCCCCCCCcchhhhhc---cChHHHHHHHHHHH----------hhhhhhhh--cccHHHHHHHHHHHHhcC
Confidence 3344444466666655554444322 23333333333333 34444444 489999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 001064 130 PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD 209 (1167)
Q Consensus 130 P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~ 209 (1167)
|+-+-++-+.+-.+...|+++++++-..++|.+.|..+...+.-+.-.. .+|+.+++. |+--+..+-.+|....+-.
T Consensus 146 p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E-~lg~~~eal--~D~tv~ci~~~F~n~s~~~ 222 (606)
T KOG0547|consen 146 PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE-QLGKFDEAL--FDVTVLCILEGFQNASIEP 222 (606)
T ss_pred CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH-hhccHHHHH--HhhhHHHHhhhcccchhHH
Confidence 9988899999999999999999999999999999999998888888766 678887763 4433333333444444444
Q ss_pred HHHHHHHHhhhHHHHHHHHH--HHHhcch-hhHHHHHHHHHHHHhcCCCcccc-cHHHHHHHHHHhhhCCCccchhh-hc
Q 001064 210 KYIEYEYMQQEWSRVAMIYT--RILENPI-QQLDRYFSSFKEFAASRPLSELR-TAEEVDAAAVAVAAAPSETGAEV-KA 284 (1167)
Q Consensus 210 ~y~~~e~~~~~~~~A~~iy~--r~l~~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~ee~~~~~~~~~~~~~e~~~~~-~~ 284 (1167)
..-+.+.+++. ..+.+.|. |--.+|. ..+..+|..|..-.......... ........-+.++....|..... +.
T Consensus 223 ~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~ 301 (606)
T KOG0547|consen 223 MAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDK 301 (606)
T ss_pred HHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHH
Confidence 44444444332 33333333 1111222 23455555544322211111111 11111111122222222211100 00
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHH
Q 001064 285 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 364 (1167)
Q Consensus 285 ~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~ 364 (1167)
...+..........+... ...+.+...+..++-.+.-.++...+...|+.+|+ +++.....+...+..+
T Consensus 302 ~te~~~~~~~~~~~n~~d---~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~--------l~~~~~~lyI~~a~~y 370 (606)
T KOG0547|consen 302 ATEECLGSESSLSVNEID---AELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK--------LDPAFNSLYIKRAAAY 370 (606)
T ss_pred HHHHhhhhhhhccccccc---hhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh--------cCcccchHHHHHHHHH
Confidence 000000000000011111 11133344445555556666778888888999998 7777777788888888
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
...++.++-...|.+|...+|.++++++.-+++..-++++++|..-|++++.+. |.+.-.++.++-.+.+++.++++..
T Consensus 371 ~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 371 ADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred hhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998888999999999999999988 8888899999999999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 524 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~k 524 (1167)
.|+.+ ++..|+.++++..++.++..++++++|.+.|++|+++.|........+..+++-+-++.+-.+++..|.+++++
T Consensus 450 ~Fee~-kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 450 TFEEA-KKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred HHHHH-HHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 99998 77899999999999999999999999999999999999753221122333444444443335899999999999
Q ss_pred HHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCH
Q 001064 525 SLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDA 595 (1167)
Q Consensus 525 al~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~ 595 (1167)
|++.+|.+..-++.++.|++.++. ++++..+||+++..- +...|..+.|---+-.+-+.
T Consensus 529 A~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lA---------rt~~E~~~a~s~aeAAraq~ 587 (606)
T KOG0547|consen 529 AIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLA---------RTESEMVHAYSLAEAARAQI 587 (606)
T ss_pred HHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999876 788999999986642 33445666666555443333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-19 Score=201.87 Aligned_cols=392 Identities=18% Similarity=0.258 Sum_probs=295.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001064 123 DAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 202 (1167)
Q Consensus 123 e~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~ 202 (1167)
++-++.+|.+...|..+++-+..+ .+++++++|++.+..+|.+...|..|+.-++ ..++++.+..+|.|+|..+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-~skdfe~VEkLF~RCLvkv---- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIEREL-ASKDFESVEKLFSRCLVKV---- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH----
Confidence 667889999999999999877766 9999999999999999999999999999999 6789999999999999754
Q ss_pred CCHHHHHHHHHHHHHhh-hH----HHHHHHHHHHHhc-chh-hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCC
Q 001064 203 LSFPLWDKYIEYEYMQQ-EW----SRVAMIYTRILEN-PIQ-QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 275 (1167)
Q Consensus 203 ~s~~lw~~y~~~e~~~~-~~----~~A~~iy~r~l~~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~ 275 (1167)
.+-+||..|+.+-.+.+ .. +.-...|+-++.. -++ ..-.+|.+|..|....+
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~ve--------------------- 142 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVE--------------------- 142 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccc---------------------
Confidence 23689999999877642 22 2223445555442 111 12345666655532210
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHH
Q 001064 276 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE 355 (1167)
Q Consensus 276 ~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~ 355 (1167)
.. .-|.++.+.+..++.|.++|..|+- +- -.
T Consensus 143 --a~----------------------------------------gk~ee~QRI~~vRriYqral~tPm~-----nl--Ek 173 (656)
T KOG1914|consen 143 --AV----------------------------------------GKYEENQRITAVRRIYQRALVTPMH-----NL--EK 173 (656)
T ss_pred --cc----------------------------------------ccHHHHHHHHHHHHHHHHHhcCccc-----cH--HH
Confidence 00 0134555777778889999975432 11 25
Q ss_pred HHHHHHHHHHHc-------------CChHHHHHHHHHHHHhc-------CC-----------CHHHHHHHHHHHHHcCCH
Q 001064 356 NWHNYLDFIERD-------------GDFNKVVKLYERCLIAC-------AN-----------YPEYWIRYVLCMEASGSM 404 (1167)
Q Consensus 356 ~W~~y~~~~e~~-------------g~~~~a~~~yeral~~~-------p~-----------~~~~w~~ya~~l~~~g~~ 404 (1167)
+|..|..|+... .++..|+.+|+...... |. ..++|.+++.|....+-.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 799999998533 34667888877754431 11 135899999977554321
Q ss_pred --------HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhhhcCCChHHHHH
Q 001064 405 --------DLAHNALARATHVFVKRLPEIHLFAARFKEQNGD--------------IDGARAAYQLVHTETSPGLLEAII 462 (1167)
Q Consensus 405 --------e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~--------------~~~A~~~~~~a~~~~~P~~~~~~~ 462 (1167)
....-+|+.++... ..++++|+.++.++...++ -+++.++|++++..+.-.+..+++
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l-~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYL-GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445677887755 7899999999999988888 788999999986555666788899
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001064 463 KHANMERRLGN---LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 539 (1167)
Q Consensus 463 ~~a~~e~r~g~---~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~ 539 (1167)
.++++++..-+ .+....+|.+++.....+ ++ -+|++|+.+..+..| ++.||.||.+|.+..-..-.++..-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~---~t--Lv~~~~mn~irR~eG-lkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDID---LT--LVYCQYMNFIRRAEG-LKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccC---Cc--eehhHHHHHHHHhhh-HHHHHHHHHHHhhccCCcchhhHHH
Confidence 99999887766 899999999999987432 32 269999999888666 9999999999998765555677777
Q ss_pred HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 540 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 540 ~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
+.||..+... .+.+.++|+..|...++.+ +....|++|+...+|...++.+.+|..+.
T Consensus 407 A~mEy~cskD--~~~AfrIFeLGLkkf~d~p---------~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 407 ALMEYYCSKD--KETAFRIFELGLKKFGDSP---------EYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhcCC--hhHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7777765332 3568899999999999887 58999999999999999999999999887
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.9e-21 Score=228.79 Aligned_cols=255 Identities=19% Similarity=0.230 Sum_probs=229.2
Q ss_pred HHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCH----HHHHHHHHHHHHcCCHHHH
Q 001064 333 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-ANYP----EYWIRYVLCMEASGSMDLA 407 (1167)
Q Consensus 333 ~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-p~~~----~~w~~ya~~l~~~g~~e~A 407 (1167)
..|++.+. -+|+..-+|..|+.|..+.++.++|+.+.+|||... +... .+|+.|..++..-|.-+..
T Consensus 1445 eDferlvr--------ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1445 EDFERLVR--------SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHHHh--------cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 34788776 688888999999999999999999999999999874 2222 3999999988888988899
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 408 HNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 487 (1167)
Q Consensus 408 ~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~ 487 (1167)
.++|+||++.+ +...+|..+..++++.+.+++|.++|+..+.++. ....+|.+|++++.++++-++|+.++.+||+.
T Consensus 1517 ~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1517 KKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 99999999987 3467999999999999999999999999855544 78999999999999999999999999999999
Q ss_pred hhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 488 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 488 ~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
.|..+| -.+...+|.++++ .|+.+++|.+|+..|..+|...++|..|+++|+.+++ .+.+|.+|||++...
T Consensus 1594 lPk~eH----v~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~lfeRvi~l~- 1664 (1710)
T KOG1070|consen 1594 LPKQEH----VEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRDLFERVIELK- 1664 (1710)
T ss_pred cchhhh----HHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHHHHHHHHhcC-
Confidence 986544 5678899999998 9999999999999999999999999999999999987 567999999999975
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 568 DSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 568 ~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
++.++++.+++.|++||+.+||...+..|..|+.+++...
T Consensus 1665 -----l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1665 -----LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred -----CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999998653
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=198.15 Aligned_cols=442 Identities=15% Similarity=0.195 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001064 116 VKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 195 (1167)
Q Consensus 116 ~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral 195 (1167)
.++..+|.+++.+|+.+..+|..|+.++.+.+.+.+..++|.+||..||++++||+..|.++++.+.+++.||.+|.|+|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999987777999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCCc---ccccHHHHHHHH
Q 001064 196 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI----QQLDRYFSSFKEFAASRPLS---ELRTAEEVDAAA 268 (1167)
Q Consensus 196 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~----~~~~~~~~~~~~~~~~~~~~---~~~~~ee~~~~~ 268 (1167)
+ .|+.+..||..|.++|+..-..-.+ -.+.+.... ..++..-..+..+..+.... .....+.-.. .
T Consensus 168 R---~npdsp~Lw~eyfrmEL~~~~Kl~~---rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~-~ 240 (568)
T KOG2396|consen 168 R---FNPDSPKLWKEYFRMELMYAEKLRN---RREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE-K 240 (568)
T ss_pred h---cCCCChHHHHHHHHHHHHHHHHHHH---HHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH-H
Confidence 9 5666899999999999874222222 122222211 11222111222221111000 0000000000 0
Q ss_pred HHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHH-HHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 001064 269 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYIAVREEM-----------YKKAKEFDSKIIGFE 336 (1167)
Q Consensus 269 ~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~-~~~i~~~~~~-----------y~~~~~~~~a~~~~e 336 (1167)
.....|.... +.......+.+ ++. ..+.+ .+.+...... +...-+......+|+
T Consensus 241 ---~d~~kel~k~---i~d~~~~~~~~---np~-----~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~e 306 (568)
T KOG2396|consen 241 ---FDFLKELQKN---IIDDLQSKAPD---NPL-----LWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYE 306 (568)
T ss_pred ---HHHHHHHHHH---HHHHHhccCCC---CCc-----cHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHH
Confidence 0000000000 00000000000 000 00000 0111111000 001112233445688
Q ss_pred hhhcCCCcccCCCChhhHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001064 337 TAIRRPYFHVKPLSVTELENWHNYLDFIERD------GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 410 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~~~~~W~~y~~~~e~~------g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~v 410 (1167)
++++. + ....+|..||++.... ......+.+|+.+.......++..-.|+..+.......+++.+
T Consensus 307 e~v~~-------l--~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 307 EAVKT-------L--PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHH-------h--hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 88762 2 2356899999987432 2456778889998888777777666666555444455566666
Q ss_pred HHHHH-HhhhccChHHHHHHHHHHHHc-CCHHHHHHHHHHHhh--hcCC--ChHHHHHHHHHHHHHcCC-HHH-HHH-HH
Q 001064 411 LARAT-HVFVKRLPEIHLFAARFKEQN-GDIDGARAAYQLVHT--ETSP--GLLEAIIKHANMERRLGN-LED-AFS-LY 481 (1167)
Q Consensus 411 l~rA~-~~~~p~~~~l~~~~a~~~e~~-g~~~~A~~~~~~a~~--~~~P--~~~~~~~~~a~~e~r~g~-~e~-A~~-~~ 481 (1167)
-.+.+ +.+ .++..+|+.....+.+. .|+. -+|+.+.. +..+ .....|.... .++ ... ... ++
T Consensus 378 a~~l~~e~f-~~s~k~~~~kl~~~~~s~sD~q---~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 378 AVKLTTELF-RDSGKMWQLKLQVLIESKSDFQ---MLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HHHhhHHHh-cchHHHHHHHHHHHHhhcchhH---HHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 55555 444 67888999888777643 2222 22222111 1112 2233344333 222 222 222 33
Q ss_pred HHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHH
Q 001064 482 EQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDK 561 (1167)
Q Consensus 482 ~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~er 561 (1167)
..++.... +..-.+-..|.++++. .|.+++||++|.+...+.|-+..++..++.||..+..-+ ..++|.+|++
T Consensus 449 ~a~~s~~~-----~~~~tl~s~~l~~~~e-~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~ 521 (568)
T KOG2396|consen 449 SALLSVIG-----ADSVTLKSKYLDWAYE-SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDR 521 (568)
T ss_pred HHHHHhcC-----CceeehhHHHHHHHHH-hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHH
Confidence 33333331 2223466788888888 777999999999999999999999999999998764322 6889999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 562 FLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 562 al~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
++...+..+ ++|..|+.||..+|..+.+..++.|+.+.+.++
T Consensus 522 a~~~fg~d~---------~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 522 ALREFGADS---------DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHhCCCh---------HHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 999887554 699999999999999999999999999998764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-19 Score=222.79 Aligned_cols=524 Identities=9% Similarity=-0.004 Sum_probs=341.4
Q ss_pred ccccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHH------
Q 001064 33 SQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEE------ 106 (1167)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~------ 106 (1167)
-.++.+|...|+.++|.....++...+|...........+ . ++++++..++++++.+|.+.+..+.|+..
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-~---~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~ 157 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-P---VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNA 157 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-c---cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccch
Confidence 3466677777777777777777777777665555544444 3 36677777777777777776666555554
Q ss_pred ----------------------------------HHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Q 001064 107 ----------------------------------TEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR-VGSMDK 151 (1167)
Q Consensus 107 ----------------------------------~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~-~~~~e~ 151 (1167)
+.. .++.++++.+++++++..|.+..++..++++++. +++ ++
T Consensus 158 l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~--l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 158 LRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY--LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH--HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HH
Confidence 333 3677889999999999999999999999999887 477 99
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC-HHHHH---------------------
Q 001064 152 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS-FPLWD--------------------- 209 (1167)
Q Consensus 152 A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s-~~lw~--------------------- 209 (1167)
+..+|+..++ .++.+|..|+.+++ ..|+.++|..++++.-.....++.. ..+|.
T Consensus 235 a~al~~~~lk---~d~~l~~ala~~yi-~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~ 310 (987)
T PRK09782 235 LLALQSQGIF---TDPQSRITYATALA-YRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD 310 (987)
T ss_pred HHHHhchhcc---cCHHHHHHHHHHHH-HCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence 9999886444 78999999999999 6898888887776633222222211 01110
Q ss_pred -------HHHHHHHHhhh--------------------------------------------------------------
Q 001064 210 -------KYIEYEYMQQE-------------------------------------------------------------- 220 (1167)
Q Consensus 210 -------~y~~~e~~~~~-------------------------------------------------------------- 220 (1167)
..+.++...+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 00122222222
Q ss_pred -HHHHHHHHHHHHhcchhh-H-HHHHHHHHHH-HhcCCCcccccHHHHHHHHHHhhhCCCccchhh-hccccccCCcccc
Q 001064 221 -WSRVAMIYTRILENPIQQ-L-DRYFSSFKEF-AASRPLSELRTAEEVDAAAVAVAAAPSETGAEV-KANEEEVQPDATE 295 (1167)
Q Consensus 221 -~~~A~~iy~r~l~~p~~~-~-~~~~~~~~~~-~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~-~~~e~~~~p~~~e 295 (1167)
.++|+++|++++..+.+. . ..+-..+..+ ..... +.....+.. +..........+ .....+..+ ..+
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~-~~~ 462 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY---LATPAKVAI----LSKPLPLAEQRQWQSQLPGIAD-NCP 462 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc---ccchHHHHH----hccccccchhHHHHhhhhhhhh-hHH
Confidence 222222332222211100 0 0000000000 00000 000000000 000000000000 000000000 000
Q ss_pred ccCCccccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHH
Q 001064 296 QTSKPVSAGLT--EAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 373 (1167)
Q Consensus 296 ~~~~~~~~~~~--~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a 373 (1167)
...+.....+. ....+ ..+..++.. ++..+|+..|.+++. ..|... ....++..+...|++++|
T Consensus 463 ~~~~al~~~p~~~~~~a~----~~LG~~l~~-~~~~eAi~a~~~Al~--------~~Pd~~-~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAW----NRLAKCYRD-TLPGVALYAWLQAEQ--------RQPDAW-QHRAVAYQAYQVEDYATA 528 (987)
T ss_pred HHHHhcccCCCCCCHHHH----HHHHHHHHh-CCcHHHHHHHHHHHH--------hCCchH-HHHHHHHHHHHCCCHHHH
Confidence 00000000000 11111 112233444 577789998999887 333322 233345555789999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc
Q 001064 374 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET 453 (1167)
Q Consensus 374 ~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~ 453 (1167)
+..|++++.. +.....|+.++..+...|+.++|...|++++... |....++..++....+.|++++|+..|+++ +++
T Consensus 529 i~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L~l 605 (987)
T PRK09782 529 LAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRS-LNI 605 (987)
T ss_pred HHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHh
Confidence 9999998777 4445678999999999999999999999999976 666666665555555679999999999998 789
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 454 SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 454 ~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
+|+ ..+|..++.++.++|++++|+..|++++...|++ +.++..++.++.. .|++++|+.+|+++++..|++.
T Consensus 606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCH
Confidence 997 8999999999999999999999999999998753 7789999988776 9999999999999999999999
Q ss_pred HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 534 PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 534 ~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
.++..++......++ .+.+...|++++...+++. .|...+.+.+....+...+.+.+.|...+.+..
T Consensus 678 ~a~~nLA~al~~lGd---~~eA~~~l~~Al~l~P~~a---------~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 678 ALIRQLAYVNQRLDD---MAATQHYARLVIDDIDNQA---------LITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCc---------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 999999999988887 6678999999999888775 366677777777777888888888887776653
|
|
| >PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=190.00 Aligned_cols=113 Identities=35% Similarity=0.618 Sum_probs=102.1
Q ss_pred hHhHHHHHHHHhhhc-CcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeecc--ccCCCceE
Q 001064 721 VGSYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSL--GSWNGGVL 795 (1167)
Q Consensus 721 vg~~Fv~~YY~~l~~-~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q--~~~~~~i~ 795 (1167)
||+.||++||++|++ +|+.|++||++++++++|+|+ ....|.++|.+++.+|+.+ ++.|+++||| ++.+++|+
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~--~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN--RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE--CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSEEE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc--hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCcEE
Confidence 799999999999999 999999999766889999998 3445667789999999998 5789999999 57889999
Q ss_pred EEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEe
Q 001064 796 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 835 (1167)
Q Consensus 796 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 835 (1167)
|+|+|.++.++..+.++|+|+|+|.+.+++|+|.||||||
T Consensus 79 i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd~~r~ 118 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEeeEEEC
Confidence 9999999999874469999999999999999999999997
|
NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A .... |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-17 Score=201.50 Aligned_cols=170 Identities=7% Similarity=-0.059 Sum_probs=126.1
Q ss_pred cccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhCCHH
Q 001064 73 LVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKY--ADHEARVGSMD 150 (1167)
Q Consensus 73 ~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~--a~~e~~~~~~e 150 (1167)
..++|+++.|++.|+++++.+|.+..+...|+.++-.. |+..+|+..+++++ .|.+..+...+ +.++...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33448889999999999999999854444777766653 78889999999999 54444444444 77888889999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 151 KVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 151 ~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
+|+++|+++|+..|.+.+++...+..+. ..++.++|+..+++++...|.+ ..+...+.+....++..+|...|++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~----~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTV----QNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcch----HHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999999887777776 5688889999999988866653 2223333433445556568999999
Q ss_pred HHhcchhhHHHHHHHHHHHHh
Q 001064 231 ILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 231 ~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
+++..|.+.+.++..+..+..
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHH
Confidence 999888777777766655543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=197.55 Aligned_cols=419 Identities=12% Similarity=0.069 Sum_probs=264.7
Q ss_pred ccccccCCcCCcccccCCCCcccCCCCCCC-ccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh
Q 001064 33 SQAAGYNSMNGNVVNEAGNATSTENGTSLG-IESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA 111 (1167)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~ 111 (1167)
=.+|..|...||+++|-..|-.....+++. +....-++|.+...+++..+..-|+++++.+|++++....|+.++....
T Consensus 311 Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 311 YQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 445666666666666666666666666555 4345555555554466666666666666666666666666666665420
Q ss_pred --hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHhhcCCH
Q 001064 112 --QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG-----VTYSVDIWLHYCIFAINTYGDP 184 (1167)
Q Consensus 112 --~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~-----~P~s~~lw~~ya~~~~~~~~~~ 184 (1167)
+-..++|..+..+.++..|.+.++|+.++.++...+-+.. ..+|.+|+.. .+--+++.-..+.+.+ ..|++
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf-~~g~~ 468 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHF-RLGNI 468 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH-HhcCh
Confidence 1134566666666666666666666666666655433332 4455554421 1122333334444444 45666
Q ss_pred HHHHHHHHHHHHhcC----CCC-CCHH--HHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcc
Q 001064 185 ETIRRLFERGLAYVG----TDY-LSFP--LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSE 257 (1167)
Q Consensus 185 ~~Ar~~feral~~~g----~d~-~s~~--lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~ 257 (1167)
.+|+..|++|+..+- .|- .+.. +-...+..++...+++.|..+|..+++..|.-++.+....
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~----------- 537 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG----------- 537 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh-----------
Confidence 666666666665411 111 0111 2333344444455566666666666655444333332221
Q ss_pred cccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001064 258 LRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFET 337 (1167)
Q Consensus 258 ~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~ 337 (1167)
.+-.......++...+..
T Consensus 538 --------------------------------------------------------------~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 538 --------------------------------------------------------------CMARDKNNLYEASLLLKD 555 (1018)
T ss_pred --------------------------------------------------------------HHHHhccCcHHHHHHHHH
Confidence 111222334445556777
Q ss_pred hhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHH-c-----------CC
Q 001064 338 AIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEA-S-----------GS 403 (1167)
Q Consensus 338 al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~--~~~~w~~ya~~l~~-~-----------g~ 403 (1167)
++. +|..++.+|..++.|+.+..++..+.+-|++.+...-. +.-..+.++.++.. . +.
T Consensus 556 ~l~--------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 556 ALN--------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHh--------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 776 77788889999999988888887788877777765222 33344555554432 1 23
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 404 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 404 ~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
.+.|+.+|.+++..+ |++...-...+-++...|++.+|+.+|.++ .+..-++.++|+..+.++..+|+|-.|++.|+.
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqV-rEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQV-REATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHH-HHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888766 666555555778888999999999999997 454556788999999999999999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001064 484 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 541 (1167)
Q Consensus 484 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~ 541 (1167)
++..+-.+ +.+.++..+++..+. .|.+.+|.....+|+...|.+..+..+++.
T Consensus 706 ~lkkf~~~----~~~~vl~~Lara~y~-~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 706 CLKKFYKK----NRSEVLHYLARAWYE-AGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHhccc----CCHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99987532 336788889999887 888999999999999999999877765443
|
|
| >KOG4353 consensus RNA export factor NXT1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-20 Score=164.23 Aligned_cols=113 Identities=25% Similarity=0.444 Sum_probs=100.9
Q ss_pred hHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCCC------ce
Q 001064 721 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNG------GV 794 (1167)
Q Consensus 721 vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~~------~i 794 (1167)
-+..||+-||+.|+++|..|.+||.++|+++ |+|+.+.|.+ .|.+.+.-||.++++|.++||||.+++ +|
T Consensus 15 ~A~eFv~~YY~smD~rR~~i~rlY~~~atlv-WNGn~v~g~e---sls~ff~~LPsS~~qi~~lD~Qpv~dqat~~q~~v 90 (139)
T KOG4353|consen 15 AAEEFVNVYYSSMDKRRRGIGRLYLDNATLV-WNGNPVSGTE---SLSEFFNMLPSSEFQINDLDCQPVHDQATGSQTTV 90 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhccceEE-EcCCcchhHH---HHHHHHHhCCCccccccccccccchhhcccccceE
Confidence 5789999999999999999999999998776 8999877665 457788889999999999999997753 59
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeCCeEE----EEcceEEeccC
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYF----VLNDIFHFLDE 838 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~----v~nd~fr~~~~ 838 (1167)
||+|+|.|+.+|. ..|.|.|||.|..+...|- |.+|||||.|-
T Consensus 91 LvvvsGtVkFdG~-k~r~F~qt~ll~~e~~~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 91 LVVVSGTVKFDGN-KQRVFNQTFLLTAEDPPFKTVWKVASDCFRFQDW 137 (139)
T ss_pred EEEEeeeEEEcCC-ccccccceeEEeecCCccchhhhhhhhhhhhhhc
Confidence 9999999999997 7899999999999987777 99999999873
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=188.89 Aligned_cols=538 Identities=12% Similarity=0.039 Sum_probs=373.2
Q ss_pred cCCcccccCCCCcccCCCCCCCcc-CCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhh-hhhhHHHH
Q 001064 41 MNGNVVNEAGNATSTENGTSLGIE-SGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKL-AQDNIVKI 118 (1167)
Q Consensus 41 ~~g~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~-~~~~~~~a 118 (1167)
.-||+-.|+.-|.++++..|.-.+ ..|-++--+.+-+..+.|+..+.+++++||.++.+...|+.+.... ....+.++
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 479999999999998777776553 3566666666668899999999999999999999999998876542 13567889
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001064 119 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV---DIWLHYCIFAINTYGDPETIRRLFERGL 195 (1167)
Q Consensus 119 r~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~---~lw~~ya~~~~~~~~~~~~Ar~~feral 195 (1167)
...+.++...+|.|+.+...++.++.-.+++..|..+.+-++...-... +-.+..++.+. ..|++++|-..|..++
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998652222 22555566666 6799999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC-CCcccc---------------
Q 001064 196 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR-PLSELR--------------- 259 (1167)
Q Consensus 196 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~-~~~~~~--------------- 259 (1167)
+..+.++. .-....+.+.+..|+++.+...|+++++..+.+++.+..+.+.+.... ......
T Consensus 335 k~~~d~~~--l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~ 412 (1018)
T KOG2002|consen 335 KADNDNFV--LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV 412 (1018)
T ss_pred ccCCCCcc--ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence 97766632 122333444444899999999999999988888777766655554331 000000
Q ss_pred cHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001064 260 TAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAI 339 (1167)
Q Consensus 260 ~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al 339 (1167)
..+....++ .+++.. +....+..+. ..++........ .. -.++.-.+.++...+.+.+|...|..++
T Consensus 413 d~~a~l~la-ql~e~~-d~~~sL~~~~-----~A~d~L~~~~~~--ip----~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 413 DSEAWLELA-QLLEQT-DPWASLDAYG-----NALDILESKGKQ--IP----PEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred cHHHHHHHH-HHHHhc-ChHHHHHHHH-----HHHHHHHHcCCC--CC----HHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 000000000 011100 0000000000 000000000000 00 1123333456777899999999999998
Q ss_pred cCCCcccCCCC--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 340 RRPYFHVKPLS--VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHV 417 (1167)
Q Consensus 340 ~r~~~~v~pld--~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~ 417 (1167)
.+-.--..+-. ..++..-.+++.+++..++++.|...|..++..+|.|.+.+++++.+....+...+|...+..++.+
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 74100000001 1223345666788899999999999999999999999999999997666778899999999999998
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHHH------------HcCCHHHHHHHHHHH
Q 001064 418 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANMER------------RLGNLEDAFSLYEQA 484 (1167)
Q Consensus 418 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e~------------r~g~~e~A~~~~~kA 484 (1167)
. ..+|.+|-+++.++....++.-|.+-|+.++.+..-. +.-..+.+++++. ..+.+++|+.+|.++
T Consensus 560 d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 560 D-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred c-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 7 7899999999999988888888888666654332222 3334445555432 234578888888888
Q ss_pred HHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 485 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 485 l~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
|..+|.+ -......|-++.. .|++.+|+.||.+..+..-+...+|.+.++....++. .-.+-+.|+.++.
T Consensus 639 L~~dpkN------~yAANGIgiVLA~-kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q---y~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 639 LRNDPKN------MYAANGIGIVLAE-KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ---YRLAIQMYENCLK 708 (1018)
T ss_pred HhcCcch------hhhccchhhhhhh-ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 8888643 1223556777666 8999999999999998877777888877776665543 4456777888888
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 565 SNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 565 ~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
.+-.. .+.+++.....-.-..|....+++...+...+.|..
T Consensus 709 kf~~~-------~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 709 KFYKK-------NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred Hhccc-------CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 75422 234677777777777888999999999988888865
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-16 Score=181.74 Aligned_cols=131 Identities=18% Similarity=0.095 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
|..++..+.+.|++++|+.+|++++...|.....|+.++.++...|++++|..+|++++...+.....++..++..+...
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 34445555667788888888888888777777788888887777888888888888887765322345566667777777
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
|++++|...++++ .+..|+.. .+..++.++.+.|++++|+.+|+++++..|
T Consensus 263 g~~~~A~~~l~~~-~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 263 GDEAEGLEFLRRA-LEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred CCHHHHHHHHHHH-HHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 7777777777776 55667653 336677777777777777777777777764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-14 Score=172.69 Aligned_cols=361 Identities=17% Similarity=0.141 Sum_probs=251.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
|+++.|+..+..+|+++|.++.+|+.|+.+++.. |+++++....-.+-.++|.+.+.|+.++++-.++|+++.|+-+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 8999999999999999999999999999999984 79999999998999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC-CC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD-YL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d-~~-s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
.|+++..|.+.++...++.++. ..|+...|...|.+++...|.. +. -..+-..++.+....++-++|.+++..++..
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~-~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQ-KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHH-HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999998 6799999999999999988721 11 1122333444444444446666666666551
Q ss_pred --chhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001064 235 --PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 312 (1167)
Q Consensus 235 --p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~ 312 (1167)
.....+.+.
T Consensus 310 ~~~~~~~ed~n--------------------------------------------------------------------- 320 (895)
T KOG2076|consen 310 EKDEASLEDLN--------------------------------------------------------------------- 320 (895)
T ss_pred ccccccccHHH---------------------------------------------------------------------
Confidence 100111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc--------------------CCCcccCCCChhhHHH-HHHHHHHHHHcCChH
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIR--------------------RPYFHVKPLSVTELEN-WHNYLDFIERDGDFN 371 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~--------------------r~~~~v~pld~~~~~~-W~~y~~~~e~~g~~~ 371 (1167)
+...+|.+.+.++.++....+... .+.+.++-.-+..+.+ ......+-++.....
T Consensus 321 ----i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~ 396 (895)
T KOG2076|consen 321 ----ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELL 396 (895)
T ss_pred ----HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchH
Confidence 111112222222222211111110 0011111111222333 111111222333333
Q ss_pred HHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 372 KVVKLYERCLIAC---ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 448 (1167)
Q Consensus 372 ~a~~~yeral~~~---p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 448 (1167)
+++.. .....+ ....++++..+..|...|.+.+|+..|..++....-++.-+|+..|.++...|.+++|...|++
T Consensus 397 e~ll~--~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 397 EALLH--FLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HHHHH--HHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 33222 222221 3456799999999999999999999999999876556778999999999999999999999999
Q ss_pred HhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHHHHHHHHHhCCHHH
Q 001064 449 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYSRFLHLVSRNAEK 517 (1167)
Q Consensus 449 a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~---~~~~~~~~~l~~~~a~~~~~~~g~~~~ 517 (1167)
+ +.+.|++.++.+.++.++.++|+.++|.+.++..+.-++. .+.+...-.+..++..++.. .|+.++
T Consensus 475 v-l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~-~gk~E~ 544 (895)
T KOG2076|consen 475 V-LILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ-VGKREE 544 (895)
T ss_pred H-HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH-hhhHHH
Confidence 8 7889999999999999999999999999998886632211 11122222356777777766 777776
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-15 Score=176.39 Aligned_cols=309 Identities=15% Similarity=0.126 Sum_probs=228.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHH
Q 001064 136 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY-LSFPLWDKYIEY 214 (1167)
Q Consensus 136 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~-~s~~lw~~y~~~ 214 (1167)
++..+..+...|++++|+.+|++++...|.+..+|...+.++. ..|++++|..+|++++....... .....|..++.
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~- 115 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFR-RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ- 115 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-
Confidence 4444666778889999999999999998988888888888887 67888888888888776211100 00011222222
Q ss_pred HHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccc
Q 001064 215 EYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 294 (1167)
Q Consensus 215 e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~ 294 (1167)
T Consensus 116 -------------------------------------------------------------------------------- 115 (389)
T PRK11788 116 -------------------------------------------------------------------------------- 115 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHH
Q 001064 295 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV 374 (1167)
Q Consensus 295 e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~ 374 (1167)
+|...+++++|+..|+++++ .++.....+..++..+.+.|++++|+
T Consensus 116 --------------------------~~~~~g~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 116 --------------------------DYLKAGLLDRAEELFLQLVD--------EGDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred --------------------------HHHHCCCHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHHhchHHHHH
Confidence 33444555566666666665 34444566777777777888888888
Q ss_pred HHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 375 KLYERCLIACANYP-----EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 375 ~~yeral~~~p~~~-----~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
.+|++++...+... .+|..++..+...|++++|..+|+++++.. |+....++.++.++.+.|++++|..+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887766542 356778888888999999999999999987 788889999999999999999999999998
Q ss_pred hhhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 450 HTETSPGL-LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 450 ~~~~~P~~-~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
.+.+|.+ ..++...+.++.+.|++++|..+++++++..|+. .++..++.++.. .|++++|+.+|+++++.
T Consensus 241 -~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-------~~~~~la~~~~~-~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 241 -EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-------DLLLALAQLLEE-QEGPEAAQALLREQLRR 311 (389)
T ss_pred -HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHH-hCCHHHHHHHHHHHHHh
Confidence 6667776 4567888889999999999999999999987631 244678888766 99999999999999999
Q ss_pred cCCCHHHHHHHHHhHhhC--CC-hhHHHHHHHHHHHHhhcCCCCC
Q 001064 529 VQLSKPLLEALIHFESIQ--SS-PKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 529 ~p~~~~l~~~~~~~e~~~--~~-~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.|++..+..-+..+.... +. .+.++.+++.+++.+...|++.
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 999886653333322111 12 1234566777777777777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-15 Score=162.52 Aligned_cols=365 Identities=12% Similarity=0.124 Sum_probs=253.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH---HHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH---YCI 175 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~---ya~ 175 (1167)
..+..|.++.+ .+.+.+|++.|-..+..+|.+-.+|+.+.++... .+.+ ...+...|.+ ..|.. +..
T Consensus 166 llYL~Gvv~k~--~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~----~~l~~~l~~~-~h~M~~~F~~~ 235 (559)
T KOG1155|consen 166 LLYLYGVVLKE--LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEIL----SILVVGLPSD-MHWMKKFFLKK 235 (559)
T ss_pred HHHHHHHHHHh--hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHH----HHHHhcCccc-chHHHHHHHHH
Confidence 33445555554 4788899999999999999998888888776633 2222 2222222211 33432 222
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHH--HhcC
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF--AASR 253 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~--~~~~ 253 (1167)
.+. .....++++.-+++.+.. |. +.+.-|-..-+...-.+.+++.|..+|+.+++.+|..++.+- .|... +.+
T Consensus 236 a~~-el~q~~e~~~k~e~l~~~-gf-~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd-lySN~LYv~~- 310 (559)
T KOG1155|consen 236 AYQ-ELHQHEEALQKKERLSSV-GF-PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD-LYSNVLYVKN- 310 (559)
T ss_pred HHH-HHHHHHHHHHHHHHHHhc-cC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH-HHhHHHHHHh-
Confidence 222 234678888888888873 32 123344444444555667899999999999998765443221 11110 000
Q ss_pred CCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 254 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 333 (1167)
Q Consensus 254 ~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~ 333 (1167)
.....+.++..++.. .+.. |. -..+-+..|.-.++-++|+.
T Consensus 311 ------~~skLs~LA~~v~~i-dKyR-----------~E---------------------TCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 311 ------DKSKLSYLAQNVSNI-DKYR-----------PE---------------------TCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred ------hhHHHHHHHHHHHHh-ccCC-----------cc---------------------ceeeehhHHHHHHhHHHHHH
Confidence 001111111111110 0000 00 00111335666778899999
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
.|.++|+ +||.-+.+|...+.=+...++...|+..|++|+..||.+..+|+.+++.++..+-..=|+-.|++
T Consensus 352 YFkRALk--------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 352 YFKRALK--------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHh--------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 9999999 99999999999998777888999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC-CC
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG-KE 492 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~-~~ 492 (1167)
|++.- |+++.+|..++.++++.+++++|++.|.++ +...-.+..++.+++.++.++++..+|..+|++.++...- ..
T Consensus 424 A~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra-i~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 424 ALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA-ILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred HHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 99976 899999999999999999999999999998 5556556789999999999999999999999999994410 01
Q ss_pred ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 493 HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 493 ~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
..+....+-+-++.++.+ .+++++|-.+..+++..
T Consensus 502 ~~~~t~ka~~fLA~~f~k-~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 502 IDDETIKARLFLAEYFKK-MKDFDEASYYATLVLKG 536 (559)
T ss_pred cchHHHHHHHHHHHHHHh-hcchHHHHHHHHHHhcC
Confidence 112222334457777666 88999998877766543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-13 Score=174.73 Aligned_cols=419 Identities=10% Similarity=0.058 Sum_probs=294.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERA 159 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~era 159 (1167)
+.......+...+. ...+..+...+-+ .|++.+|+++|+.+.... +.+.-++..++..+.+.+..+.|..+|+.+
T Consensus 356 ~~~~~~~~~~~~~~-~~~~~~~y~~l~r--~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 356 SLAAYNGGVSGKRK-SPEYIDAYNRLLR--DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hHHHhccccCCCCC-chHHHHHHHHHHH--CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 33444444443333 3334434443434 378999999999998875 344455666778888999999999999877
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh-h
Q 001064 160 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ-Q 238 (1167)
Q Consensus 160 L~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~-~ 238 (1167)
.. .+...|...+..+. ..++++.|+++|+++++ .|..+ +...|..++....+.|+++.|..+|+++.+.... +
T Consensus 433 ~~---pd~~Tyn~LL~a~~-k~g~~e~A~~lf~~M~~-~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 433 RN---PTLSTFNMLMSVCA-SSQDIDGALRVLRLVQE-AGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred CC---CCHHHHHHHHHHHH-hCcCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 65 46677888888777 67999999999999887 33332 3578999999999999999999999888654211 1
Q ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHH
Q 001064 239 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 318 (1167)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~ 318 (1167)
. ..|+. +
T Consensus 507 v-vTyna--------------------------------------------------------------------L---- 513 (1060)
T PLN03218 507 V-HTFGA--------------------------------------------------------------------L---- 513 (1060)
T ss_pred H-HHHHH--------------------------------------------------------------------H----
Confidence 1 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---cCCCHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA---CANYPEYWIRYV 395 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~---~p~~~~~w~~ya 395 (1167)
-..|.+.+++++|+..|++.... . +.| +...|..++..+-+.|++++|..+|++.... ..-+...|..++
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~---G---v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSK---N---VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHc---C---CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 12345556667777777776542 1 222 3567888888888888999999998888753 122345777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHcCCH
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
..+.+.|++++|..+|++..+...+.+...|......+.+.|++++|+.+|++.... +.|+ ...|..++..+.+.|++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Confidence 888888899999999988887654556678888888888889999999998886322 2454 55777788888888999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--cCCCHHHHHHHHHhHhhCCChhHH
Q 001064 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH--VQLSKPLLEALIHFESIQSSPKQI 552 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~--~p~~~~l~~~~~~~e~~~~~~~~~ 552 (1167)
++|..+|++.++... ......|..++..+.+ .|++++|+++|++..+. .| +...|..++......+. +
T Consensus 666 eeA~~l~~eM~k~G~-----~pd~~tynsLI~ay~k-~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~---~ 735 (1060)
T PLN03218 666 DKAFEILQDARKQGI-----KLGTVSYSSLMGACSN-AKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQ---L 735 (1060)
T ss_pred HHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCC---H
Confidence 999999888877542 1124567777777666 88899999999887653 34 45667777766666555 5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 553 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 553 ~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
+.+.++|+++...+-... ...+...+.-..+.|+++.+.++..++.+.
T Consensus 736 eeAlelf~eM~~~Gi~Pd--------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPN--------TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 667888887765432211 236777777788888888888888888765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-13 Score=170.36 Aligned_cols=457 Identities=12% Similarity=-0.023 Sum_probs=292.3
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 91 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 91 ~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
-..|...+.-+..+.+..+ +|++..|+..|+++++.+|.+......++.++...|+.++|+.++++|+.-.|.+....
T Consensus 28 ~~~p~~~~~~y~~aii~~r--~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRAR--AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred ccCccchhHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 4567777776666665555 58999999999999999999964444999999999999999999999994444444444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 250 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~ 250 (1167)
...+..+. ..|++++|+.+|+++++..|.+ ..++...+......++.+.|+..+++++...+.+...+.. .+.
T Consensus 106 lalA~ly~-~~gdyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l---ayL 178 (822)
T PRK14574 106 ASAARAYR-NEKRWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL---SYL 178 (822)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH---HHH
Confidence 44466777 6799999999999999966554 6777777787888899999999999999987664332222 221
Q ss_pred hcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 251 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS 330 (1167)
Q Consensus 251 ~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~ 330 (1167)
... .....++....+.+... .+.+.+.+.+++... ...+-...
T Consensus 179 ~~~----~~~~~~AL~~~ekll~~-----------------------------~P~n~e~~~~~~~~l----~~~~~~~~ 221 (822)
T PRK14574 179 NRA----TDRNYDALQASSEAVRL-----------------------------APTSEEVLKNHLEIL----QRNRIVEP 221 (822)
T ss_pred HHh----cchHHHHHHHHHHHHHh-----------------------------CCCCHHHHHHHHHHH----HHcCCcHH
Confidence 110 00011111111111110 111222222232221 11221222
Q ss_pred HHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHH--Hc---------C---ChHHHHHHHHHHHHhcCCCH---H----
Q 001064 331 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE--RD---------G---DFNKVVKLYERCLIACANYP---E---- 389 (1167)
Q Consensus 331 a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e--~~---------g---~~~~a~~~yeral~~~p~~~---~---- 389 (1167)
|. +.+-.+|-+ ..+. -..|..+-..-+ +. . -.++++.-+++.+...+..| .
T Consensus 222 a~---~l~~~~p~~----f~~~-~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~ 293 (822)
T PRK14574 222 AL---RLAKENPNL----VSAE-HYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQR 293 (822)
T ss_pred HH---HHHHhCccc----cCHH-HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHH
Confidence 22 111111100 1111 122433322211 11 1 23567888888887444333 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----CCChHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET-----SPGLLEAIIKH 464 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-----~P~~~~~~~~~ 464 (1167)
+.+.....|...+++.+++..|+.......+--.-+....|+.+...+..++|..+|.+++..- .|........+
T Consensus 294 ~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L 373 (822)
T PRK14574 294 ARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDL 373 (822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHH
Confidence 3445556677789999999999877643211122355566788888999999999999984321 12233323444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhC---------CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHH
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKG---------KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPL 535 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~---------~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l 535 (1167)
...+...+++++|..++++.....|- +...++........+..+.. .|++.+|.+++++.+...|.|..|
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~-~gdl~~Ae~~le~l~~~aP~n~~l 452 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA-LNDLPTAQKKLEDLSSTAPANQNL 452 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45555789999999999999986551 01112333444444555444 899999999999999999999999
Q ss_pred HHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCC
Q 001064 536 LEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRS 614 (1167)
Q Consensus 536 ~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~ 614 (1167)
+..++.++...+.+.+ +..++++++...|++.. +--....-....|+...+.++.+.+.+++|+..+
T Consensus 453 ~~~~A~v~~~Rg~p~~---A~~~~k~a~~l~P~~~~---------~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 453 RIALASIYLARDLPRK---AEQELKAVESLAPRSLI---------LERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhcCCHHH---HHHHHHHHhhhCCccHH---------HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 9999999999988554 77888888777766542 1222222333448899999999999999998753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-17 Score=184.88 Aligned_cols=268 Identities=18% Similarity=0.191 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGV--TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKY 211 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~--P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y 211 (1167)
...+.+|.++.+.|++++|.+++++.+... |.+.++|..++.+.. ..++.+.|+..|++++..... +...+..+
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l 84 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKA---NPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc---cccccccc
Confidence 344566666666666666666665554443 566666666666665 456666666666666653222 33344455
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCC
Q 001064 212 IEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQP 291 (1167)
Q Consensus 212 ~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p 291 (1167)
+.+ ...+++++|..+++++++.... ..++..
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~~~~--~~~l~~---------------------------------------------- 115 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYERDGD--PRYLLS---------------------------------------------- 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-cccccccccccccccccccccc--cchhhH----------------------------------------------
Confidence 554 3445556665555544332211 000100
Q ss_pred ccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChH
Q 001064 292 DATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 371 (1167)
Q Consensus 292 ~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~ 371 (1167)
+ ..+|...+++.++...++++...+ ..+.+...|..++.++.+.|+.+
T Consensus 116 ----------------------~----l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 116 ----------------------A----LQLYYRLGDYDEAEELLEKLEELP------AAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---------T-HHHHHHHHHHHHHCCHHH
T ss_pred ----------------------H----HHHHHHHhHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCCHH
Confidence 0 011223333444444444433210 12345678999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 451 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 451 (1167)
+|+.+|+++|...|.+++++..++.++...|+.++++.++.+..... |.++.+|..++..+...|++++|+..|+++ .
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~-~ 241 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA-L 241 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc-c
Confidence 99999999999999999999999999988999999999999888876 788999999999999999999999999998 7
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 452 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 452 ~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
+.+|+++.++..+++++...|+.++|..++++++...
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998753
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-15 Score=172.96 Aligned_cols=302 Identities=14% Similarity=0.090 Sum_probs=251.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 181 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~ 181 (1167)
.++..+..+..=+-.+|..+|++.-...++.......++..+..+.+|++|+++|+.+=+..|..++---.|-..+. .+
T Consensus 322 ~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW-HL 400 (638)
T KOG1126|consen 322 GLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW-HL 400 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH-HH
Confidence 34444444333356789999999778888888777889999999999999999999999999876655555555544 22
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccH
Q 001064 182 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 261 (1167)
Q Consensus 182 ~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1167)
.+ +-+...+-+-| +-.++.++.-|-..+.+.--|++.+.|++.|+|++++++...-.+-
T Consensus 401 q~-~v~Ls~Laq~L--i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayT------------------ 459 (638)
T KOG1126|consen 401 QD-EVALSYLAQDL--IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYT------------------ 459 (638)
T ss_pred Hh-hHHHHHHHHHH--HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhh------------------
Confidence 22 22334444433 2367779999999999999999999999999999999775211111
Q ss_pred HHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001064 262 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 341 (1167)
Q Consensus 262 ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r 341 (1167)
+ ++.-+..++++++|...|..+|.
T Consensus 460 ----------------------------------------------------L---lGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 460 ----------------------------------------------------L---LGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred ----------------------------------------------------h---cCChhhhhHHHHhHHHHHHhhhc-
Confidence 0 01113445677888888999998
Q ss_pred CCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc
Q 001064 342 PYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 421 (1167)
Q Consensus 342 ~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~ 421 (1167)
.++..+.+|.-++-.+.++++++.|...|++|+.++|.+.-+...++.++...|+.|+|+.+|++|+.+. |+
T Consensus 484 -------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~k 555 (638)
T KOG1126|consen 484 -------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PK 555 (638)
T ss_pred -------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999987 88
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 422 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
++.-.+..+.++...+++++|+..++.+ .++.|+...++...+.++.++|+.+.|...|.-|+.++|.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeL-k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEEL-KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHH-HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999997 8999999999999999999999999999999999999975
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-14 Score=167.55 Aligned_cols=384 Identities=12% Similarity=0.092 Sum_probs=269.5
Q ss_pred ccccccCC--cCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 001064 33 SQAAGYNS--MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKL 110 (1167)
Q Consensus 33 ~~~~~~~~--~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~ 110 (1167)
.|||.-.. +.|+.+.|.+-+..|+..+|...+..-+++-++.+.|+..++....-.+-.+||.|.+.|..++.+..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 45555444 6799999999999999999999999999999999989999999988899999999999999999999984
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHhhcCCHH
Q 001064 111 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-----VDIWLHYCIFAINTYGDPE 185 (1167)
Q Consensus 111 ~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-----~~lw~~ya~~~~~~~~~~~ 185 (1167)
+++++|+-+|.++|...|.+..+....+.++.++|+..+|...|.+++...|.. .++-..++++.+ +.++-+
T Consensus 221 --~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~-~~~~~e 297 (895)
T KOG2076|consen 221 --GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI-THNERE 297 (895)
T ss_pred --ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH-HhhHHH
Confidence 899999999999999999999999999999999999999999999999999843 234445566777 456669
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHH--HHHH-h-cCCCcccccH
Q 001064 186 TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF--KEFA-A-SRPLSELRTA 261 (1167)
Q Consensus 186 ~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~--~~~~-~-~~~~~~~~~~ 261 (1167)
.|.+.++-++. .+.+-.+..-.+.|+.+.+....++.+.....+.......+-+.=|.-. .... + ......-...
T Consensus 298 ~a~~~le~~~s-~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 298 RAAKALEGALS-KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHh-hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 99999999998 3333345556678888888888888886665555442111111111000 0000 0 0000000000
Q ss_pred HHHHHHHHHh-hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001064 262 EEVDAAAVAV-AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIR 340 (1167)
Q Consensus 262 ee~~~~~~~~-~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~ 340 (1167)
+--. .+..+ ...+.+... +..+.- ........-.+.+. ++.-..+.|...+++.+|+..|..++.
T Consensus 377 ~l~v-~rl~icL~~L~~~e~----------~e~ll~--~l~~~n~~~~d~~d-L~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKEREL----------LEALLH--FLVEDNVWVSDDVD-LYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cchh-HhHhhhhhcccccch----------HHHHHH--HHHHhcCChhhhHH-HHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 0000 00000 000000000 000000 00000011122222 333335678899999999999999987
Q ss_pred CCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-
Q 001064 341 RPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 419 (1167)
Q Consensus 341 r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~- 419 (1167)
++- -.+..+|...+.++...|.+++|+..|+++|...|.+.++.+.++.++..+|+.|+|..+++..+.-..
T Consensus 443 ~~~-------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 443 REG-------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred Ccc-------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 421 233678999999999999999999999999999999999999999999999999999999887541110
Q ss_pred -------ccChHHHHHHHHHHHHcCCHHH
Q 001064 420 -------KRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 420 -------p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
+....+.+...+++.+.|+.++
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 1234566677888888888776
|
|
| >PLN03134 glycine-rich RNA-binding protein 4; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=156.12 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=76.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+++|||+|||+++|+++|+++|++||.|+++.| +.++.+++++|||||+|.+.++|++||+. ++..|+|+.|+|+++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKV-IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4689999999999999999999999999999886 66888999999999999999999999976 899999999999998
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+.++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-13 Score=170.40 Aligned_cols=412 Identities=10% Similarity=0.075 Sum_probs=297.5
Q ss_pred ccccCCCCchHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSSD--FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 149 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~d--~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~ 149 (1167)
.+...|++..+++.|+.+.+.+... .-.+..++..+.+ .+.+..|..+|+.+.. | +...|..++..+.+.+++
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~--~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--QRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--CCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCH
Confidence 4444589999999999998887543 3334456666665 3788999999888765 6 457899999999999999
Q ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 150 DKVVEVYERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 150 e~A~~l~eraL~~~-P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
+.|.++|+++++.. ..+...|...+..+. ..|+.+.|+++|+++... |..+ +...|..+|....+.|++++|..+|
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~-k~G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCA-KSGKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999998753 356788888888888 689999999999999873 3322 3578999999999999999999999
Q ss_pred HHHHhc--chhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcc
Q 001064 229 TRILEN--PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 306 (1167)
Q Consensus 229 ~r~l~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~ 306 (1167)
.++... .++ ...+-.....+..... .+++..+...+... ..+ ..|
T Consensus 531 ~~M~~~Gv~PD-~vTYnsLI~a~~k~G~------~deA~~lf~eM~~~---~~g--------i~P--------------- 577 (1060)
T PLN03218 531 GIMRSKNVKPD-RVVFNALISACGQSGA------VDRAFDVLAEMKAE---THP--------IDP--------------- 577 (1060)
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHHHCCC------HHHHHHHHHHHHHh---cCC--------CCC---------------
Confidence 999874 222 2222222222222211 12222111111000 000 001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cC
Q 001064 307 EAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CA 385 (1167)
Q Consensus 307 ~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~-~p 385 (1167)
+... ....-..|-+.+++++|+..|+++.++. + +.+...|..++..+.+.|++++|+.+|++.... +.
T Consensus 578 D~vT----ynaLI~ay~k~G~ldeA~elf~~M~e~g------i-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 578 DHIT----VGALMKACANAGQVDRAKEVYQMIHEYN------I-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred cHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHcC------C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 1111 1222345788899999999999998731 1 234578999999999999999999999998876 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHH
Q 001064 386 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKH 464 (1167)
Q Consensus 386 ~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~ 464 (1167)
-+...|..++..+.+.|++++|..++++..+...+-+...|..+...+.+.|++++|+.+|+.+.. .+.| +...|..+
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~L 725 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNAL 725 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence 345688888999999999999999999998865455677888899999999999999999998621 2456 45679999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc-CCCHHHHHHHHHh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV-QLSKPLLEALIHF 542 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~-p~~~~l~~~~~~~ 542 (1167)
+..+.+.|++++|..+|++.....- .++ ...|..+...+.+ .|++++|+++|.+.++.- ..+...+..++.+
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi----~Pd-~~Ty~sLL~a~~k-~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGL----CPN-TITYSILLVASER-KDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999876431 122 3356666666555 999999999999998853 2234445444433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-14 Score=183.53 Aligned_cols=452 Identities=10% Similarity=0.027 Sum_probs=329.0
Q ss_pred cccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCC
Q 001064 71 QELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 71 ~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~--~P~~~~~W~~~a~~e~~~~~ 148 (1167)
..+...|+++.|...|+.... .|...|..|+..+-+ .++.++|..+|++++.. .|+. ..+..++..+.+.++
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~--~g~~~eAl~lf~~M~~~g~~Pd~-~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFE--NGECLEGLELFFTMRELSVDPDL-MTITSVISACELLGD 303 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC
Confidence 344455888888888877653 356789999998887 47899999999999875 5655 556777888889999
Q ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 001064 149 MDKVVEVYERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMI 227 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~-P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~i 227 (1167)
.+.+++++..+++.- ..+..+|..++..+. ..|++++|+++|+++.. .| ...|...+.-..+.|++++|..+
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~vf~~m~~---~d---~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEKVFSRMET---KD---AVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHHHHhhCCC---CC---eeeHHHHHHHHHhCCCHHHHHHH
Confidence 999999999888743 346788888888888 67999999999998753 22 35689999888889999999999
Q ss_pred HHHHHhc--chh--hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 228 YTRILEN--PIQ--QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 228 y~r~l~~--p~~--~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
|+++.+. .|+ .+..+...+ ..... .+++..+ +....+... .
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~---~~~g~------~~~a~~l----~~~~~~~g~---------~------------- 421 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSAC---ACLGD------LDVGVKL----HELAERKGL---------I------------- 421 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHH---hccch------HHHHHHH----HHHHHHhCC---------C-------------
Confidence 9988764 222 222222222 11111 1111111 110000000 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
.+.. .....-..|.+.+++++|+..|++..+ .+...|..++.-+.+.|+.++|+.+|++.+..
T Consensus 422 --~~~~----~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 422 --SYVV----VANALIEMYSKCKCIDKALEVFHNIPE-----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred --cchH----HHHHHHHHHHHcCCHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 0000 222334568889999999999998654 23457999999999999999999999999876
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
..-+...+..+...+...|+.+.+..++..+++.-...+..+...+.+++.+.|++++|+.+|+.. +.+...|..
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~ 559 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNI 559 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHH
Confidence 555666777777778889999999999999887654445566667788899999999999999874 346778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC--CHHHHHHHHH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL--SKPLLEALIH 541 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~--~~~l~~~~~~ 541 (1167)
++..+.+.|+.++|..+|++.++.... |+ ...|..+.....+ .|++++|+++|+...+..+. +...|..++.
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~----Pd-~~T~~~ll~a~~~-~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVN----PD-EVTFISLLCACSR-SGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC----CC-cccHHHHHHHHhh-cChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999998874321 11 1234444444344 89999999999999854332 3356667777
Q ss_pred hHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 542 FESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 542 ~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+....|. ++.+..++++.- ..|+ ..+|...+.-...+|+.+..+.+.+++.++.|..
T Consensus 634 ~l~r~G~---~~eA~~~~~~m~-~~pd----------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 634 LLGRAGK---LTEAYNFINKMP-ITPD----------PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHhCCC---HHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 7777666 666788888752 1221 2589999999999999999999999999988764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-13 Score=151.28 Aligned_cols=430 Identities=11% Similarity=0.038 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001064 135 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 214 (1167)
Q Consensus 135 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~ 214 (1167)
..+..++.+.+.++|++|++.|..++.++|+.+-.+.+.+-.+. ..|+++++.+--.++|...|.. ......-+.-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~-~lgd~~~Vied~TkALEl~P~Y---~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYE-SLGDWEKVIEDCTKALELNPDY---VKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHH-HHhhHHHHHHHHHHHhhcCcHH---HHHHHHHHHH
Confidence 35667888999999999999999999999987666767766666 6899999999999999854432 2333333333
Q ss_pred HHHhhhHHHHHHHHHHHHhc---chhh----HHHHHHHHHHHHhcCC----CcccccHHHHHHHHHHhhhCCCccchhhh
Q 001064 215 EYMQQEWSRVAMIYTRILEN---PIQQ----LDRYFSSFKEFAASRP----LSELRTAEEVDAAAVAVAAAPSETGAEVK 283 (1167)
Q Consensus 215 e~~~~~~~~A~~iy~r~l~~---p~~~----~~~~~~~~~~~~~~~~----~~~~~~~ee~~~~~~~~~~~~~e~~~~~~ 283 (1167)
.+..|++++|..=..-..-+ .... .++..+.--....... ....+..-..+. -++..+.
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~---syf~sF~------- 262 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA---SYFGSFH------- 262 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH---HHHhhcc-------
Confidence 44556666663222111111 0011 1222221111000000 000011000000 0001000
Q ss_pred ccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCC--cccCCCChhh---HHHH
Q 001064 284 ANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK-AKEFDSKIIGFETAIRRPY--FHVKPLSVTE---LENW 357 (1167)
Q Consensus 284 ~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~-~~~~~~a~~~~e~al~r~~--~~v~pld~~~---~~~W 357 (1167)
.+.... ...........+...+ +.+|.. ...|..+...+.+.+..-. .+++.+|..- ....
T Consensus 263 --------~~~~~~--~~~~~~ksDa~l~~~l---~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 263 --------ADPKPL--FDNKSDKSDAALAEAL---EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred --------cccccc--ccCCCccchhhHHHHH---HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 000000 0000000001111111 111111 1234444444444332100 0111122110 1112
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 437 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g 437 (1167)
..-+.|..-.|+.-.+...|+.+|..+|....+++..+..+....+.++..+.|.+|..+. |.++.+|+..+.+....+
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 2223444556889999999999999999999999999999998899999999999999988 899999999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH
Q 001064 438 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 517 (1167)
Q Consensus 438 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~ 517 (1167)
++++|..-|+++ ++++|++.-.+++.+.++.|++.++++...|+.++..+|+ .|+.|.-++.++.. .++++.
T Consensus 409 q~e~A~aDF~Ka-i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~~fAeiLtD-qqqFd~ 480 (606)
T KOG0547|consen 409 QYEEAIADFQKA-ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYNLFAEILTD-QQQFDK 480 (606)
T ss_pred HHHHHHHHHHHH-hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHhh-HHhHHH
Confidence 999999999998 8999999999999999999999999999999999999974 37889999999887 889999
Q ss_pred HHHHHHHHHhhcCC------CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001064 518 ARQILVDSLDHVQL------SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 591 (1167)
Q Consensus 518 Ar~i~~kal~~~p~------~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~ 591 (1167)
|.+.|.+|+++.|. +...+..-+.+... . .++++.+..|+.+|++..|.. .........|+..
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-w-k~d~~~a~~Ll~KA~e~Dpkc---------e~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-W-KEDINQAENLLRKAIELDPKC---------EQAYETLAQFELQ 549 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhc-h-hhhHHHHHHHHHHHHccCchH---------HHHHHHHHHHHHH
Confidence 99999999999998 55443332222222 1 134788999999999987643 3577888899999
Q ss_pred hCCHHHHHHHHHHHHhhhCC
Q 001064 592 FGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 592 ~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
.|+++.+..+.++...+-..
T Consensus 550 ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 99999999999998887643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-13 Score=175.97 Aligned_cols=433 Identities=11% Similarity=0.071 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-CCCHHHHHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV-TYSVDIWLHY 173 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~-P~s~~lw~~y 173 (1167)
...|..++..+.+ .++..+|..+|+.+.... ..+...|..++..+.+.++++.++.++..+++.- ..++..+...
T Consensus 87 ~~~~~~~i~~l~~--~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 87 GVSLCSQIEKLVA--CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred ceeHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3467777776665 378888888888887653 3355677888888888888888888888877632 2356777777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhc
Q 001064 174 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ-QLDRYFSSFKEFAAS 252 (1167)
Q Consensus 174 a~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~-~~~~~~~~~~~~~~~ 252 (1167)
+..+. ..|+++.|+++|++... . +...|...+..+.+.|++++|..+|+++++.... +...+-.....+...
T Consensus 165 i~~y~-k~g~~~~A~~lf~~m~~---~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 165 LLMHV-KCGMLIDARRLFDEMPE---R---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHh-cCCCHHHHHHHHhcCCC---C---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 77777 67888888888887754 2 2356888888888888888888888888775221 111111111111111
Q ss_pred CCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 253 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 332 (1167)
Q Consensus 253 ~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~ 332 (1167)
. .+ +....+...+.. . + . .++ .. .....-..|.+.+++++|+
T Consensus 238 ~---~~---~~~~~l~~~~~~----~-g----~----~~d---------------~~----~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 238 G---SA---RAGQQLHCCVLK----T-G----V----VGD---------------TF----VSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred C---cH---HHHHHHHHHHHH----h-C----C----Ccc---------------ce----eHHHHHHHHHHCCCHHHHH
Confidence 1 00 111100000000 0 0 0 000 00 1223345688899999999
Q ss_pred HHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 333 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASGSMDLAHNAL 411 (1167)
Q Consensus 333 ~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~~~~~w~~ya~~l~~~g~~e~A~~vl 411 (1167)
..|++... .+...|..++..+.+.|+.++|+.+|++.... ..-+...+..++..+.+.|++++|..++
T Consensus 280 ~vf~~m~~-----------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 280 CVFDGMPE-----------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred HHHHhCCC-----------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 99987643 24668999999999999999999999998765 3345567888888888999999999999
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 412 ARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 412 ~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
...++.-.+.+..++..+.+++.+.|++++|+.+|++. . .| +...|..++..+.+.|+.++|..+|++.+....
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-~--~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-- 422 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-P--RK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGV-- 422 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-C--CC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Confidence 99988765566778888999999999999999999986 3 33 566899999999999999999999999887542
Q ss_pred CccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC--CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001064 492 EHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL--SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 569 (1167)
Q Consensus 492 ~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~--~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~ 569 (1167)
.|+ ...|..+...+.. .|++++|+++|+...+..+. +...|..++.+....|. ++.+.++|++... .
T Consensus 423 --~Pd-~~T~~~ll~a~~~-~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~---~~eA~~~~~~~~~----~ 491 (697)
T PLN03081 423 --APN-HVTFLAVLSACRY-SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL---LDEAYAMIRRAPF----K 491 (697)
T ss_pred --CCC-HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC---HHHHHHHHHHCCC----C
Confidence 122 3356666666555 89999999999999875332 23456667777666665 6667777776421 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 570 PSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 570 ~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
+. ..+|...+.....+|+.+..+++.+++.++.|.
T Consensus 492 p~-------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 492 PT-------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 21 247999999999999999999999998877765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-15 Score=178.93 Aligned_cols=253 Identities=16% Similarity=0.232 Sum_probs=204.7
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001064 152 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL--SFPLWDKYIEYEYMQQEWSRVAMIYT 229 (1167)
Q Consensus 152 A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~--s~~lw~~y~~~e~~~~~~~~A~~iy~ 229 (1167)
..+=|+|.|..+|++.-+|+.|..|.+ ..+++++||++++|||..+...-. -..||..|.++|...|.-+.+.++|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 345688999999999999999999998 688999999999999987642211 34789999999999987788889999
Q ss_pred HHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001064 230 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309 (1167)
Q Consensus 230 r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~ 309 (1167)
|+++.-. .|.-|
T Consensus 1522 RAcqycd-----~~~V~--------------------------------------------------------------- 1533 (1710)
T KOG1070|consen 1522 RACQYCD-----AYTVH--------------------------------------------------------------- 1533 (1710)
T ss_pred HHHHhcc-----hHHHH---------------------------------------------------------------
Confidence 9865311 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--C
Q 001064 310 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN--Y 387 (1167)
Q Consensus 310 ~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~--~ 387 (1167)
..+..+|.+.+++.+|.+.|+..+++ -.+....|..|++|+.+.++-+.|+.++.|||.+.|. +
T Consensus 1534 ------~~L~~iy~k~ek~~~A~ell~~m~KK--------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1534 ------LKLLGIYEKSEKNDEADELLRLMLKK--------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred ------HHHHHHHHHhhcchhHHHHHHHHHHH--------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 11234677777778888888888873 2256789999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcCCChHH-HHHHHH
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH-TETSPGLLE-AIIKHA 465 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~-~~~~P~~~~-~~~~~a 465 (1167)
.++.-..|+++.+.|+-+.++.+|+-.+..+ |+..++|..|.+.+.++|+.+-+|.+|+|++ +.+.|.... ++-+|.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 7899999999999999999999999999988 8899999999999999999999999999983 234455544 477888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhh
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+|...|+-+.+..+=.+|++..
T Consensus 1679 eyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred HHHHhcCchhhHHHHHHHHHHHH
Confidence 88888898877777777777654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=178.19 Aligned_cols=264 Identities=18% Similarity=0.218 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 176 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~ 176 (1167)
..+.++..+.. .+++++|.+++++.+... |++..+|..++++....++++.|+..|++++...+.++.....++.+
T Consensus 10 ~~l~~A~~~~~--~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 10 EALRLARLLYQ--RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34456666655 367788888886655444 77778888888888888888888888888887777777777777777
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCc
Q 001064 177 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256 (1167)
Q Consensus 177 ~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~ 256 (1167)
. ..+++++|..+++++.+..+ +..+|..++......++++++..++.++...+....+
T Consensus 88 -~-~~~~~~~A~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------- 145 (280)
T PF13429_consen 88 -L-QDGDPEEALKLAEKAYERDG----DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS---------------- 145 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-----------------
T ss_pred -c-cccccccccccccccccccc----ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC----------------
Confidence 3 45777788777777766432 3466677777777777777777776665432110000
Q ss_pred ccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 257 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 336 (1167)
Q Consensus 257 ~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e 336 (1167)
..++..+..++.+.++.++|+..|+
T Consensus 146 -------------------------------------------------------~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 146 -------------------------------------------------------ARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0023334456677777788888888
Q ss_pred hhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 337 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
++|+ ++|++.+++..++.++...|+.++++.++++.....|.++.+|..++..+...|+.++|+..|++++.
T Consensus 171 ~al~--------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 171 KALE--------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHH--------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHH--------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 8887 67777788888888888888899888888888888888889999999999999999999999999998
Q ss_pred hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 417 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
.. |+++.++..+|+++.+.|+.++|..++.+++
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT----------------
T ss_pred cc-ccccccccccccccccccccccccccccccc
Confidence 77 8899999999999999999999999988874
|
|
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-16 Score=153.87 Aligned_cols=130 Identities=34% Similarity=0.481 Sum_probs=95.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||||||.++.+.+|+++|.+||.|..|.+ +++. ...+||||+|++..+|+.||.. +|..++|..|+||+.+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieL--K~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIEL--KNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEe--ccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 489999999999999999999999999999664 3332 2568999999999999999988 8999999999999998
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC--------C-CCCCCCCCCCCCCCCCCCCCCCC
Q 001064 1110 PNTGSTSRGGR-RGRGRGSYQTDAPRGRFGGR--------G-LGRGSAQDGGDYNRSRGNGFYQR 1164 (1167)
Q Consensus 1110 ~~~~~~~~g~~-~g~grg~~~~~~~rg~~g~~--------~-~gr~~~~~~~~~~r~~g~g~~~~ 1164 (1167)
.-++.+.++|+ .|+||||.++++.+|+-.-| | ...++|++.+|.||..|..+|..
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfad 146 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFAD 146 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeee
Confidence 76544433332 23333322211111111111 2 13567889999999999888753
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-13 Score=159.76 Aligned_cols=293 Identities=10% Similarity=-0.015 Sum_probs=206.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhcCCHHHHHH
Q 001064 111 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-DIWLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 111 ~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-~lw~~ya~~~~~~~~~~~~Ar~ 189 (1167)
.+|++..|++.+.++.+..|+..-+++..++...+.|++++|.+.|+++++..|.+. .+...++.+.+ ..++++.|+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHH
Confidence 468999999999999999998888888889999999999999999999999888874 67777888888 6799999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
.++++++..|. +..++..+.......|+|+.|..++.++++....+-..+. .
T Consensus 175 ~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~-~------------------------ 226 (409)
T TIGR00540 175 GVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA-D------------------------ 226 (409)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH-H------------------------
Confidence 99999996555 4678888888888999999998888887654211100000 0
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
.+
T Consensus 227 -----------------------------------------------l~------------------------------- 228 (409)
T TIGR00540 227 -----------------------------------------------LE------------------------------- 228 (409)
T ss_pred -----------------------------------------------HH-------------------------------
Confidence 00
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA----NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p----~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
...|..+++- +..+.....++++....| +++.+++.++..+...|+.++|.++++++++.. |++...
T Consensus 229 ----~~a~~~~l~~----~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~ 299 (409)
T TIGR00540 229 ----QKAEIGLLDE----AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAI 299 (409)
T ss_pred ----HHHHHHHHHH----HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccc
Confidence 0011111100 111112223333333333 567777777777777778888888888887776 444432
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhhhCCCccCchHH
Q 001064 426 --HLFAARFKEQNGDIDGARAAYQLVHTETSPGLL--EAIIKHANMERRLGNLEDAFSLYEQ--AIAIEKGKEHSQTLPM 499 (1167)
Q Consensus 426 --~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~--~~~~~~a~~e~r~g~~e~A~~~~~k--Al~~~~~~~~~~~~~~ 499 (1167)
...........++.+.+++.++++ ++..|+++ .+...++.++.+.|++++|++.|++ +++..|+ +.
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~-lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-------~~ 371 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQ-AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-------AN 371 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-------HH
Confidence 122222222346777888888887 67788888 7788888888888999999998884 5555542 34
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 500 LYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 500 l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
.+.+++.+++. .|+.++|+++|++++..
T Consensus 372 ~~~~La~ll~~-~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 372 DLAMAADAFDQ-AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 56688888887 88899999999988763
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-13 Score=148.67 Aligned_cols=379 Identities=12% Similarity=0.013 Sum_probs=288.2
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHh
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKK---YADHEARV 146 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~---~a~~e~~~ 146 (1167)
..+...+++--++.-.+...|..-|--.+....++..--+. .+..+.--..+...|...+.|+- ++.++.-.
T Consensus 137 a~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g-----~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~ 211 (564)
T KOG1174|consen 137 ARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG-----NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFK 211 (564)
T ss_pred HHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc-----hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcc
Confidence 33444444445667777777887887777666665554431 22333444566667777666542 23333333
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHH
Q 001064 147 GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAM 226 (1167)
Q Consensus 147 ~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~ 226 (1167)
..+.-+..+|-.-+...|.|++|....++.+. ..|+.+++.-.|+++... |+....-.+.|+.++...+.+++.-.
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~-~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLY-YNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhh-hhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 44555667777788888999999999999998 789999999999999984 44445567788888877788887766
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcc
Q 001064 227 IYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 306 (1167)
Q Consensus 227 iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~ 306 (1167)
+-.+++.+.......+|-..
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~------------------------------------------------------------ 307 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHA------------------------------------------------------------ 307 (564)
T ss_pred HHHHHHhhhhcchhhhhhhh------------------------------------------------------------
Confidence 66665554333223232111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 001064 307 EAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN 386 (1167)
Q Consensus 307 ~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~ 386 (1167)
.+.-..|++..|+..-+++|. +++.+...+...+..+...++.+.|+-.|+.|...-|.
T Consensus 308 -------------~~l~~~K~~~rAL~~~eK~I~--------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 308 -------------QLLYDEKKFERALNFVEKCID--------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred -------------hhhhhhhhHHHHHHHHHHHhc--------cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 112234667777777888888 88888888999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH-HHH-HHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 387 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA-RFK-EQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 387 ~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a-~~~-e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
.-+.+.-+...+...|++.+|......++..+ +.+....-+.+ ... ..-..-++|.++|++. +.++|+...+....
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~-L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKS-LKINPIYTPAVNLI 444 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhh-hccCCccHHHHHHH
Confidence 99999999999999999999999999999887 66666655553 332 2233457899999998 78999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
+.+..+.|.++.++.+++++|...++ -.++.++++++.. .+.+.+|...|..||.++|++..-...+-.+|.
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~A-~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPD-------VNLHNHLGDIMRA-QNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccc-------cHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 99999999999999999999999864 3488999999765 889999999999999999999999988888888
Q ss_pred hCCC
Q 001064 545 IQSS 548 (1167)
Q Consensus 545 ~~~~ 548 (1167)
...+
T Consensus 517 ~~~~ 520 (564)
T KOG1174|consen 517 SDDE 520 (564)
T ss_pred ccCC
Confidence 7643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-16 Score=171.26 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHH
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 538 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~ 538 (1167)
-+|+.|+.+.+|.+.++.||.+|++|++.. .....+|+.+|.+++...++.+.|++||+++++.+|.+..+|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 479999999999999999999999998543 22357999999999986778888999999999999999999999
Q ss_pred HHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchh
Q 001064 539 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAE-REELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSE 617 (1167)
Q Consensus 539 ~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~-~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~~~~ 617 (1167)
|++|+...++ ++.+|.+||+++... +.+. ...||+.|++||..+||++++.++++|+.+++++..
T Consensus 76 Y~~~l~~~~d---~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~---- 141 (280)
T PF05843_consen 76 YLDFLIKLND---INNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN---- 141 (280)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-----
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh----
Confidence 9999999876 678999999998863 3344 788999999999999999999999999999998631
Q ss_pred hhhcchhhhhcchHHHhhhcCCCCCC
Q 001064 618 LRKRHAEDFLASERAKMAKSYSGAPS 643 (1167)
Q Consensus 618 ~~kr~~~~~~~~~~~k~~~~~~~~~~ 643 (1167)
.-...++||++++++||+..
T Consensus 142 ------~~~~f~~ry~~~~~~~~~~~ 161 (280)
T PF05843_consen 142 ------SLELFSDRYSFLDLNPISPR 161 (280)
T ss_dssp ------HHHHHHCCT-BTTB-CCHHC
T ss_pred ------HHHHHHHHhhccccCcccHH
Confidence 12346789999999999865
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-13 Score=167.29 Aligned_cols=450 Identities=12% Similarity=0.042 Sum_probs=328.2
Q ss_pred cccCCCCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCC
Q 001064 73 LVDGSAMSGEEDRLWNIVKAN--SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 73 ~~~~~~~~~a~~~l~~~l~~n--P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~--~P~~~~~W~~~a~~e~~~~~ 148 (1167)
+...+.++++++.|+.+.... .-|...|..|+..+.+. ++++.++.++..+++. .| +...|..++..+.+.|+
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCC
Confidence 344589999999999888754 34778888999988874 6889999999998875 35 56889999999999999
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
+++|+++|+++.. .+...|...+..+. ..|++++|..+|++++.. |..+. ...+...+......+....++.++
T Consensus 174 ~~~A~~lf~~m~~---~~~~t~n~li~~~~-~~g~~~~A~~lf~~M~~~-g~~p~-~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 174 LIDARRLFDEMPE---RNLASWGTIIGGLV-DAGNYREAFALFREMWED-GSDAE-PRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred HHHHHHHHhcCCC---CCeeeHHHHHHHHH-HCcCHHHHHHHHHHHHHh-CCCCC-hhhHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999865 35678888888887 679999999999999873 44333 345566666666678888888888
Q ss_pred HHHHhcchhh----HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccC
Q 001064 229 TRILENPIQQ----LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 304 (1167)
Q Consensus 229 ~r~l~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~ 304 (1167)
..+++..... +..+...|.+ .. ..+++.. ++....+.
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k---~g------~~~~A~~----vf~~m~~~-------------------------- 288 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSK---CG------DIEDARC----VFDGMPEK-------------------------- 288 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHH---CC------CHHHHHH----HHHhCCCC--------------------------
Confidence 8877753221 1222222221 11 1122211 11111000
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001064 305 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 384 (1167)
Q Consensus 305 ~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~ 384 (1167)
+...| ...-..|.+.++.++|+..|++..+.. +.| +...+..++..+-+.|+++++..+++.++...
T Consensus 289 --~~vt~----n~li~~y~~~g~~~eA~~lf~~M~~~g------~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 289 --TTVAW----NSMLAGYALHGYSEEALCLYYEMRDSG------VSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred --ChhHH----HHHHHHHHhCCCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 11112 222345788899999999999887521 222 24478888888889999999999999999873
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHH
Q 001064 385 -ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAII 462 (1167)
Q Consensus 385 -p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~ 462 (1167)
+.+..++..++..+.+.|++++|..+|++..+ .+...|..+...+.+.|+.++|.++|++... .+.|+ ...+.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~ 430 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFL 430 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHH
Confidence 56667899999999999999999999988653 3567888889999999999999999999732 24565 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 463 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 463 ~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
.....+.+.|..++|..+|+...+...-. +. ...|..+.+.+.+ .|++++|.++|++.- ..| +...|..++.-
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~---p~-~~~y~~li~~l~r-~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a 503 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIK---PR-AMHYACMIELLGR-EGLLDEAYAMIRRAP-FKP-TVNMWAALLTA 503 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCC---CC-ccchHhHHHHHHh-cCCHHHHHHHHHHCC-CCC-CHHHHHHHHHH
Confidence 77788889999999999999988643211 11 2356777777776 999999999998752 334 45678777776
Q ss_pred HhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 001064 543 ESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 607 (1167)
Q Consensus 543 e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~ 607 (1167)
-...++ ++.++.++++.+...+++.. .+...+......|..+.+.++.+.+.+
T Consensus 504 ~~~~g~---~~~a~~~~~~l~~~~p~~~~---------~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 504 CRIHKN---LELGRLAAEKLYGMGPEKLN---------NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHcCC---cHHHHHHHHHHhCCCCCCCc---------chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 666665 66788889998887776542 456667777888999999888887754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-13 Score=172.36 Aligned_cols=450 Identities=11% Similarity=0.045 Sum_probs=265.3
Q ss_pred ccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHhhhh
Q 001064 35 AAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKAN--SSDFSAWTALLEETEKLAQ 112 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~n--P~d~~aw~~L~~~~~~~~~ 112 (1167)
+-..|...|+.+.|..-|......+. ...-++-..+.+.|.++++++.|....+.. |+ ...+..++..+.+.
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~---~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~-- 301 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDC---ISWNAMISGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISACELL-- 301 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCc---chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc--
Confidence 34567778888888877777654322 223444444555588888888888877653 33 33344444444432
Q ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEF-PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~-P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
++++.+++++..+++.- .-+...|..++..+.+.|++++|+++|+++.. .++..|...+..+. ..|++++|..+|
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~-~~g~~~~A~~lf 377 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYE-KNGLPDKALETY 377 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHH-hCCCHHHHHHHH
Confidence 45555555555554432 22334455555555555555555555554432 23344544444444 345555555555
Q ss_pred HHHHHhcCCCCC----------------------------------CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001064 192 ERGLAYVGTDYL----------------------------------SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 237 (1167)
Q Consensus 192 eral~~~g~d~~----------------------------------s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~ 237 (1167)
+++.. .|..+. +..+|..++..+.+.|+++.|+++|+++.+.+..
T Consensus 378 ~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 378 ALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 54433 122111 2234555555555555555555555554332221
Q ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001064 238 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 317 (1167)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~ 317 (1167)
.+..+...| .... ..+++..+...+.. ...| +...+..++
T Consensus 457 s~~~mi~~~---~~~g------~~~eA~~lf~~m~~--------------~~~p---------------d~~t~~~lL-- 496 (857)
T PLN03077 457 SWTSIIAGL---RLNN------RCFEALIFFRQMLL--------------TLKP---------------NSVTLIAAL-- 496 (857)
T ss_pred eHHHHHHHH---HHCC------CHHHHHHHHHHHHh--------------CCCC---------------CHhHHHHHH--
Confidence 111111111 1110 01111111111100 0001 011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
..+...+..+.+.+.+..+++.- +. .+......+++.+.+.|+.++|..+|+++ ..+...|..++..
T Consensus 497 --~a~~~~g~l~~~~~i~~~~~~~g------~~-~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~ 563 (857)
T PLN03077 497 --SACARIGALMCGKEIHAHVLRTG------IG-FDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTG 563 (857)
T ss_pred --HHHhhhchHHHhHHHHHHHHHhC------CC-ccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHH
Confidence 12344455566666666666521 11 12334567889999999999999999986 4567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcCCChHHHHHHHHHHHHHcCCH
Q 001064 398 MEASGSMDLAHNALARATHVFV-KRLPEIHLFAARFKEQNGDIDGARAAYQLVH--TETSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~--~~~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
+...|+.++|..+|++..+.-. |+ ...+........+.|++++|+.+|+... ..+.|+ ...|..+++++.|.|++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCH
Confidence 9999999999999998876422 33 3344444556778999999999999873 123554 57788899999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001064 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 554 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ 554 (1167)
++|..++++. ...|+ +.+|..+.... +..|+.+.|..+.++++++.|++...+..+..+....+..+++..
T Consensus 642 ~eA~~~~~~m-~~~pd-------~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 642 TEAYNFINKM-PITPD-------PAVWGALLNAC-RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHHHHHHC-CCCCC-------HHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 9999999875 22221 55787777764 448999999999999999999999888888877777777666555
Q ss_pred HHHHH
Q 001064 555 LEQLV 559 (1167)
Q Consensus 555 ar~l~ 559 (1167)
+|+..
T Consensus 713 vr~~M 717 (857)
T PLN03077 713 VRKTM 717 (857)
T ss_pred HHHHH
Confidence 55554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-11 Score=137.22 Aligned_cols=269 Identities=11% Similarity=0.035 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
...++-...++++|+..||+.++ -||-.++....|-+.+--.++..+...+-+.+...+...++--.-.|.+
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~k--------nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRK--------NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANY 339 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHh--------cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhH
Confidence 34456677889999999999988 3444344444444433333445556666667777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001064 398 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 477 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 477 (1167)
+...++.+.|...|+||++++ |+...+|.+.++=+.+..+...|...|+++ ++++|.+..+|+.++..+.-++...-|
T Consensus 340 YSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA-vdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA-VDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH-HhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 777777888888888888877 777888888887777777778888888887 778888888888888888888888888
Q ss_pred HHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHH
Q 001064 478 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQ 557 (1167)
Q Consensus 478 ~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~ 557 (1167)
.-.|++|++..|++ +.+|..+|....+ .+++++|.+.|++++...-.+...+..++.+...+.+ .+.+-.
T Consensus 418 LyYfqkA~~~kPnD------sRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~~eAa~ 487 (559)
T KOG1155|consen 418 LYYFQKALELKPND------SRLWVALGECYEK-LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---LNEAAQ 487 (559)
T ss_pred HHHHHHHHhcCCCc------hHHHHHHHHHHHH-hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---HHHHHH
Confidence 88888888877543 6688888888655 7888888888888887766666666566666555543 344666
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 558 LVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 558 l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
+|++++...-...+ -.+..+.+......|+.+++|-+.+...-.+....
T Consensus 488 ~yek~v~~~~~eg~--~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 488 YYEKYVEVSELEGE--IDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 67776653211111 11222333333677778888777665544444433
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-12 Score=139.47 Aligned_cols=435 Identities=14% Similarity=0.106 Sum_probs=235.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Q 001064 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG-SMDKVVEVYERAV 160 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~-~~e~A~~l~eraL 160 (1167)
-...++.++...+.|...|..++.++.+. +...+..++|.++|..+|+++++|+.-|.++...+ +++.|+.+|.|+|
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 35678899999999999999999999984 55889999999999999999999999999998655 4999999999999
Q ss_pred hccCCCHHHHHHHHHHHHhhcCCHHHHHHH-----------HHHHHHh--cCC-CCCCHHHHHHHHH--HHHHhhhHHHH
Q 001064 161 QGVTYSVDIWLHYCIFAINTYGDPETIRRL-----------FERGLAY--VGT-DYLSFPLWDKYIE--YEYMQQEWSRV 224 (1167)
Q Consensus 161 ~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~-----------feral~~--~g~-d~~s~~lw~~y~~--~e~~~~~~~~A 224 (1167)
+.+|+++.||..|.++++........-+++ .++.... +.. +.....+-..-.. .........+.
T Consensus 168 R~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel 247 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKEL 247 (568)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHH
Confidence 999999999999999988321111111111 1111110 000 0000000000000 00000000111
Q ss_pred -HHHHHHHHhcchhhH----HHHHHHHHHHHhc--CCCcccccHHHHHH---HHHHhhhCCCccchhhhccccccCCccc
Q 001064 225 -AMIYTRILENPIQQL----DRYFSSFKEFAAS--RPLSELRTAEEVDA---AAVAVAAAPSETGAEVKANEEEVQPDAT 294 (1167)
Q Consensus 225 -~~iy~r~l~~p~~~~----~~~~~~~~~~~~~--~~~~~~~~~ee~~~---~~~~~~~~~~e~~~~~~~~e~~~~p~~~ 294 (1167)
..+++-+....+.+. +..-..+..+... ...+......+... .--++|+-
T Consensus 248 ~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee-------------------- 307 (568)
T KOG2396|consen 248 QKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEE-------------------- 307 (568)
T ss_pred HHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHH--------------------
Confidence 122222222111111 1111111111110 00000000000000 00001100
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHH
Q 001064 295 EQTSKPVSAGLTEAEELEKYIAVREEMYK--KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK 372 (1167)
Q Consensus 295 e~~~~~~~~~~~~~~~~~~~i~~~~~~y~--~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~ 372 (1167)
....+....-|+.||....+.+. ..+.....+..|+.+... ..+.+...+.+.....++.... .
T Consensus 308 ------~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~-----~~l~~~~~~~ys~~~l~~~t~~---~ 373 (568)
T KOG2396|consen 308 ------AVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHEL-----KLLSECLYKQYSVLLLCLNTLN---E 373 (568)
T ss_pred ------HHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-----cccccchHHHHHHHHHHHhccc---h
Confidence 00112233445556666544433 222344444456665541 2233333333333333333332 2
Q ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC-HHHHH--HHHH
Q 001064 373 VVKLYERCL-IACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD-IDGAR--AAYQ 447 (1167)
Q Consensus 373 a~~~yeral-~~~p~~~~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~-~~~A~--~~~~ 447 (1167)
++.+-+... ....++..+|+.+...+... .+++--...+--.+.-.+ ....+..|+..- .++ +...+ .++.
T Consensus 374 ~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~--~s~~~~~w~s~~--~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 374 AREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV--CSELLISWASAS--EGDSLQEDTLDLIIS 449 (568)
T ss_pred HhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh--cchhHHHHHHHh--hccchhHHHHHHHHH
Confidence 222222222 33467788999998877632 333221111111111111 122333333222 222 22222 2333
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Q 001064 448 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV-SRNAEKARQILVDSL 526 (1167)
Q Consensus 448 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~-~g~~~~Ar~i~~kal 526 (1167)
.+.....++...+-..+..+..+.+.+.+|+.+|.+...+.|- .-.++-+...|+-.. .=++..+|++|..|+
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~------sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPF------SLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCc------cHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 3333446777777778888888899999999999998887652 134666666665432 225899999999999
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 527 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 527 ~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
..+..+..+|..|..+|..+|.++. +-.+|-||+..
T Consensus 524 ~~fg~d~~lw~~y~~~e~~~g~~en---~~~~~~ra~kt 559 (568)
T KOG2396|consen 524 REFGADSDLWMDYMKEELPLGRPEN---CGQIYWRAMKT 559 (568)
T ss_pred HHhCCChHHHHHHHHhhccCCCccc---ccHHHHHHHHh
Confidence 9999999999999999999888654 56778887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=158.77 Aligned_cols=292 Identities=10% Similarity=0.056 Sum_probs=242.6
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 79 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 158 (1167)
Q Consensus 79 ~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 158 (1167)
..+|+..|.+.-...++--.....+++.+-.+ .++++++++|+.+=...|...+.--.|.-.+....+--+---+-+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl--~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFEL--IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 35667777774444455443334888888875 6999999999999999999987777777777766666666677788
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001064 159 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 238 (1167)
Q Consensus 159 aL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~ 238 (1167)
.+...|++++-|...++++- ..++.+.|++.|+||++..+.. .-.+...+.=.....++|.|...|+.+|...+.+
T Consensus 413 Li~~~~~sPesWca~GNcfS-LQkdh~~Aik~f~RAiQldp~f---aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFS-LQKDHDTAIKCFKRAIQLDPRF---AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhh-hhhHHHHHHHHHHHhhccCCcc---chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 88899999999999999987 6789999999999999955543 2223333332233578999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHH
Q 001064 239 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 318 (1167)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~ 318 (1167)
+-.||-+.
T Consensus 489 YnAwYGlG------------------------------------------------------------------------ 496 (638)
T KOG1126|consen 489 YNAWYGLG------------------------------------------------------------------------ 496 (638)
T ss_pred hHHHHhhh------------------------------------------------------------------------
Confidence 88888222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
-+|.++++++.|...|++|+. ++|.+.-+-..++.++.+.|+.++|+.+|++|+..+|.++---+..+.++
T Consensus 497 -~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 497 -TVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred -hheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 256777888888999999998 89999988888999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
...+++++|+..|++.-++. |+...++++.+.++.+.|+.+.|+.-|--+ .+++|.-..
T Consensus 568 ~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A-~~ldpkg~~ 626 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWA-LDLDPKGAQ 626 (638)
T ss_pred HhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHH-hcCCCccch
Confidence 99999999999999988766 899999999999999999999999999988 788987554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-12 Score=143.30 Aligned_cols=401 Identities=17% Similarity=0.207 Sum_probs=269.5
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHH
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA-RVGSMDKVVEVYER 158 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~-~~~~~e~A~~l~er 158 (1167)
+.....++..|...|.-+.-|-.++...-++ +....+.++|++.+.-+|.+..+|+.|..+.. ..++.+..+.+|++
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~kl--g~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKL--GNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 5566778888999999999999999998886 78999999999999999999999999999987 56788889999999
Q ss_pred HHhccC---CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-----hhHHHHHHHHHH
Q 001064 159 AVQGVT---YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ-----QEWSRVAMIYTR 230 (1167)
Q Consensus 159 aL~~~P---~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~-----~~~~~A~~iy~r 230 (1167)
|+..+. .+..+|-.|+.|+. ..++......+|+|.|. +|.+.. ...+..|-.+.... ..++.+..+=..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en-~qks~k~v~~iyeRile-iP~~~~-~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFEN-GQKSWKRVANIYERILE-IPLHQL-NRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHh-ccccHHHHHHHHHHHHh-hhhhHh-HHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 998775 58999999999997 67899999999999998 555422 24555555555442 122322222221
Q ss_pred HHh---cch-hhHHHHHHHHHHHHhcCCCcccccHH-----HHHHHHHHhhhCCCccchhhhccccccCCccccccCCcc
Q 001064 231 ILE---NPI-QQLDRYFSSFKEFAASRPLSELRTAE-----EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPV 301 (1167)
Q Consensus 231 ~l~---~p~-~~~~~~~~~~~~~~~~~~~~~~~~~e-----e~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~ 301 (1167)
..+ ++. .....-+..+...... +....+.+ +...+++.++....+........|..+..+... .++.
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~--~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfh--vkpl 292 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTD--PSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFH--VKPL 292 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccC--ccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccc--cCcc
Confidence 111 000 0011111122111110 01111111 111122222222111111111111111100000 0111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001064 302 SAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 381 (1167)
Q Consensus 302 ~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral 381 (1167)
...+.++|+.|+.. ....++++.....|++.+. ++. .-.+.|.+|+.|.+..|+.+-+..++.++.
T Consensus 293 --~~aql~nw~~yLdf----~i~~g~~~~~~~l~ercli------~cA--~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 293 --DQAQLKNWRYYLDF----EITLGDFSRVFILFERCLI------PCA--LYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred --cHHHHHHHHHHhhh----hhhcccHHHHHHHHHHHHh------HHh--hhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 12445677777644 3455777788888998874 111 123689999999999999999998888877
Q ss_pred Hh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHH---HHHHHHhh-hcCCC
Q 001064 382 IA-CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR---AAYQLVHT-ETSPG 456 (1167)
Q Consensus 382 ~~-~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~---~~~~~a~~-~~~P~ 456 (1167)
+. ++..+.+.+.++.+.+..|+++.|+.+|++...-+ |....+-+.++.++.+.|+.+.+. .++..... ..+++
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 65 78999999999999999999999999999999988 899999999999999999999988 44443310 11222
Q ss_pred h-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 457 L-LEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 457 ~-~~~~~~~a~~e~-r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
. ...+..++.+.. -.++.+.|+.++.++++..+.. -.+|..+.+|+..
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~------k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDC------KVLYLELIRFELI 487 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc------HHHHHHHHHHHHh
Confidence 2 234566665543 3478899999999999998642 4589999999776
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=137.45 Aligned_cols=204 Identities=15% Similarity=0.131 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 469 (1167)
+.+.++.-+...|+...|+.-+++|+++. |++...|...|.++...|+.+.|.+.|+++ +.++|++.++...|+.|++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA-lsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKA-LSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHH-HhcCCCccchhhhhhHHHH
Confidence 55666666667788888888888888866 788888888888888888888888888888 6788888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 470 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 470 r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
.+|.+++|...|++|+.... -+..+..|.+++.+..+ .|+.+.|+.+|+++|+++|+.+.....++.+++..++
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~----Y~~~s~t~eN~G~Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~- 188 (250)
T COG3063 115 AQGRPEEAMQQFERALADPA----YGEPSDTLENLGLCALK-AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD- 188 (250)
T ss_pred hCCChHHHHHHHHHHHhCCC----CCCcchhhhhhHHHHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc-
Confidence 88888888888888887531 12234567777777666 8889999999999999998888888888888887765
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 550 KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 550 ~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
.-.+|..+++.....+.+. +-+..-+.++...||.+.+.+...++..+||..
T Consensus 189 --y~~Ar~~~~~~~~~~~~~A---------~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 189 --YAPARLYLERYQQRGGAQA---------ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred --chHHHHHHHHHHhcccccH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 4457888888877654332 356667789999999999999999999999975
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-12 Score=161.50 Aligned_cols=169 Identities=14% Similarity=0.015 Sum_probs=120.2
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
++|++...|..++..+...|++++|+.+|++++..+|.++..++.++..+...|++++|+..+++++...+|+.+..+..
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~ 446 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSM 446 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHH
Confidence 34444455555566666788999999999999999999887665555555567889999999999988766788888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
++.++...|++++|+..+.++ ....|+....+...+..+.+.| +++...+++.++...... ..+.. +..++
T Consensus 447 la~~l~~~G~~~eA~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~---~~~~~---~~~~~ 517 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEI-STQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID---NNPGL---LPLVL 517 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHh-hhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh---cCchH---HHHHH
Confidence 999999999999999999886 6667887777777777776776 488888888776553211 11111 33332
Q ss_pred HHHhCCHHHHHHHHHHHHhh
Q 001064 509 HLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal~~ 528 (1167)
. ..|+.+.+.-+ +++.+.
T Consensus 518 ~-~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 518 V-AHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H-HHhhhHHHHHH-HHhhcc
Confidence 2 36666665554 555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-12 Score=141.13 Aligned_cols=435 Identities=16% Similarity=0.205 Sum_probs=282.7
Q ss_pred CcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC
Q 001064 52 ATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 131 (1167)
Q Consensus 52 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~ 131 (1167)
++.-+..+|..+--...+-+.|..++.+++..+.+++...-.|.-..+|..++.-... -+++.....+|-++|..- .
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA--~~df~svE~lf~rCL~k~-l 107 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA--RKDFRSVESLFGRCLKKS-L 107 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh--hhhHHHHHHHHHHHHhhh-c
Confidence 4445667777776677777888877999999999999999999999999977764333 268889999999999765 4
Q ss_pred CHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHH
Q 001064 132 CYGYWKKYADHEARVGS---------MDKVVEVYERAVQGVTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERG 194 (1167)
Q Consensus 132 ~~~~W~~~a~~e~~~~~---------~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~--------~~~~~~~Ar~~fera 194 (1167)
+.++|..|.+.-.+.++ +-+|-+.--.|.-..|.+..+|-.|+.|+.. ...++|..|+.|.||
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 58999999998777653 2233333334555678999999999999862 123578899999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhhHH-------------HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccH
Q 001064 195 LAYVGTDYLSFPLWDKYIEYEYMQQEWS-------------RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 261 (1167)
Q Consensus 195 l~~~g~d~~s~~lw~~y~~~e~~~~~~~-------------~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1167)
|. .|.+-. ..+|..|-.||.+.++.. .||..|+.+.. +.......+....
T Consensus 188 l~-tP~~nl-eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~n---------------lt~Gl~v~~~~~~ 250 (660)
T COG5107 188 LQ-TPMGNL-EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQN---------------LTRGLSVKNPINL 250 (660)
T ss_pred Hc-CccccH-HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH---------------HhccccccCchhh
Confidence 98 454422 489999999999976533 33444433321 1111100000000
Q ss_pred HHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH-H-HHHHHHHH-HHHHHhh
Q 001064 262 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY-K-KAKEFDSK-IIGFETA 338 (1167)
Q Consensus 262 ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y-~-~~~~~~~a-~~~~e~a 338 (1167)
..+. . + +. +...+|..+|.-....- + ...-..+. --.|+.+
T Consensus 251 Rt~n--------K-------------------~--------~r-~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~ 294 (660)
T COG5107 251 RTAN--------K-------------------A--------AR-TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQI 294 (660)
T ss_pred hhhc--------c-------------------c--------cc-cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHH
Confidence 0000 0 0 00 00111222211110000 0 00000011 1125555
Q ss_pred hcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 339 IRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 339 l~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+. || +-..++|..|-.+....+|-++|+...+|++..||. +.++|+.+++...+.++...+|+++++..
T Consensus 295 ~~--y~------~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 295 LD--YF------YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HH--Hh------hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 54 11 112478999999999999999999999999977776 88899998888888888888887776643
Q ss_pred hc--------------c----ChHH-----------HHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCChHHHHHHHHHHH
Q 001064 419 VK--------------R----LPEI-----------HLFAARFKEQNGDIDGARAAYQLVHTET-SPGLLEAIIKHANME 468 (1167)
Q Consensus 419 ~p--------------~----~~~l-----------~~~~a~~~e~~g~~~~A~~~~~~a~~~~-~P~~~~~~~~~a~~e 468 (1167)
.. + .+++ |..+...-.+..-++.||++|-++...- ...+.-++..+..+.
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH
Confidence 21 0 1222 2222333345566888999999873211 122333344444443
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC--HHHHHHHHHhHhhC
Q 001064 469 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIHFESIQ 546 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~--~~l~~~~~~~e~~~ 546 (1167)
..|+..-|-.+|+..+..+++. +.....|..|+.. .++-..||.+|+++++..-+. +.+|..|+.+|...
T Consensus 444 -~~~d~~ta~~ifelGl~~f~d~------~~y~~kyl~fLi~-inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 444 -ATGDRATAYNIFELGLLKFPDS------TLYKEKYLLFLIR-INDEENARALFETSVERLEKTQLKRIYDKMIEYESMV 515 (660)
T ss_pred -hcCCcchHHHHHHHHHHhCCCc------hHHHHHHHHHHHH-hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh
Confidence 4688999999999999998642 4455788888887 899999999999999877666 79999999999999
Q ss_pred CChhHHHHHHHHHHHHhh
Q 001064 547 SSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 547 ~~~~~~~~ar~l~eral~ 564 (1167)
|+... +-.+=+|+..
T Consensus 516 G~lN~---v~sLe~rf~e 530 (660)
T COG5107 516 GSLNN---VYSLEERFRE 530 (660)
T ss_pred cchHH---HHhHHHHHHH
Confidence 98443 4444444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=161.12 Aligned_cols=263 Identities=13% Similarity=0.071 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHH---------HcCChHHHHHHHH
Q 001064 309 EELEKYIAVREEMYK-KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE---------RDGDFNKVVKLYE 378 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~-~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e---------~~g~~~~a~~~ye 378 (1167)
+.+..|+.-+..++. ....+.+|+..|+++++ ++|.....|..++.++. ..+++++|+..++
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 444445444333333 23567889999999998 89988888887776543 2245789999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001064 379 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 379 ral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
+++..+|+++++|..++.++...|++++|...|++|+++. |+++.+|+.++.++...|++++|+..|+++ ++++|++.
T Consensus 329 ~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A-l~l~P~~~ 406 (553)
T PRK12370 329 KATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC-LKLDPTRA 406 (553)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCCh
Confidence 9999999999999999999999999999999999999988 899999999999999999999999999998 89999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHH
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 538 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~ 538 (1167)
..++..+.+....|++++|+..+++++...+ +..+..+..++.++.. .|++++|+..+++.+...|++...+..
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-----p~~~~~~~~la~~l~~-~G~~~eA~~~~~~~~~~~~~~~~~~~~ 480 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHL-----QDNPILLSMQVMFLSL-KGKHELARKLTKEISTQEITGLIAVNL 480 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-----ccCHHHHHHHHHHHHh-CCCHHHHHHHHHHhhhccchhHHHHHH
Confidence 7765556566678999999999999998753 2236677778888665 999999999999999888887777765
Q ss_pred HHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001064 539 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 601 (1167)
Q Consensus 539 ~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v 601 (1167)
+.......++ .....++.+++.... .+.+. -| .-.|+..+||-+....+
T Consensus 481 l~~~~~~~g~-~a~~~l~~ll~~~~~-~~~~~----------~~--~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 481 LYAEYCQNSE-RALPTIREFLESEQR-IDNNP----------GL--LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHhccHH-HHHHHHHHHHHHhhH-hhcCc----------hH--HHHHHHHHhhhHHHHHH
Confidence 5554444432 112233443333322 11111 11 55566777776665554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-11 Score=146.52 Aligned_cols=294 Identities=10% Similarity=0.060 Sum_probs=167.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhcCCHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-DIWLHYCIFAINTYGDPETIRRL 190 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-~lw~~ya~~~~~~~~~~~~Ar~~ 190 (1167)
+|++++|++...+.-...+...-++...+....+.|+++.|...|+++.+..|++. ......+.+.+ ..|+++.|+..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 46777777666555444332234444445555777777777777777777766653 22233355655 56777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Q 001064 191 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVA 270 (1167)
Q Consensus 191 feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~ 270 (1167)
++++++..|. +..............|+|++|..++.++.+....+.+.+- ...
T Consensus 176 l~~~~~~~P~---~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~-~l~----------------------- 228 (398)
T PRK10747 176 VDKLLEVAPR---HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA-MLE----------------------- 228 (398)
T ss_pred HHHHHhcCCC---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH-HHH-----------------------
Confidence 7777774443 3555666666666677777777777666543221111000 000
Q ss_pred hhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC
Q 001064 271 VAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 350 (1167)
Q Consensus 271 ~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld 350 (1167)
T Consensus 229 -------------------------------------------------------------------------------- 228 (398)
T PRK10747 229 -------------------------------------------------------------------------------- 228 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a 430 (1167)
...|..++.-.....+.+....++++.....+++++++..|+..+...|+.++|..+++++++. +.++.+...++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~~ 303 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLIP 303 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHh
Confidence 0001111111111122233333333333334556667777777666677777777777766662 33455555555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
.+. .++.+++++.+++. .+..|+++.+++.++.+..+.+++++|+..|+++++..|+ ...+..++.++..
T Consensus 304 ~l~--~~~~~~al~~~e~~-lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-------~~~~~~La~~~~~ 373 (398)
T PRK10747 304 RLK--TNNPEQLEKVLRQQ-IKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-------AYDYAWLADALDR 373 (398)
T ss_pred hcc--CCChHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHH
Confidence 442 36666677766665 5566777777777777777777777777777777766543 2234456666554
Q ss_pred HhCCHHHHHHHHHHHHhhc
Q 001064 511 VSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 511 ~~g~~~~Ar~i~~kal~~~ 529 (1167)
.|+.++|..+|+++|.+.
T Consensus 374 -~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 374 -LHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -cCCHHHHHHHHHHHHhhh
Confidence 677777777777776543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-12 Score=152.83 Aligned_cols=295 Identities=7% Similarity=-0.015 Sum_probs=225.7
Q ss_pred cCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHH
Q 001064 75 DGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY-GYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 75 ~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~-~~W~~~a~~e~~~~~~e~A~ 153 (1167)
..|+++.+.+.+.++.+..|...-.+...++.+.. .|+.+++...|+++++.+|++. .+...++.+.+..|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~--~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ--RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34899999999999999999988888888888876 4899999999999999999985 67777899999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHH
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVA-MIYTRIL 232 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~-~iy~r~l 232 (1167)
..+++.++..|.+..++..++..++ ..|+++.++..+++.++....+ .. ++..++ ..+...+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~-~~~d~~~a~~~l~~l~k~~~~~---~~-------------~~~~l~~~a~~~~l 236 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYI-RSGAWQALDDIIDNMAKAGLFD---DE-------------EFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCCCC---HH-------------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7899999999999999852221 11 011110 0000000
Q ss_pred hcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001064 233 ENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 312 (1167)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~ 312 (1167)
.....
T Consensus 237 -----------~~~~~---------------------------------------------------------------- 241 (409)
T TIGR00540 237 -----------DEAMA---------------------------------------------------------------- 241 (409)
T ss_pred -----------HHHHH----------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH--
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY-- 390 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~-- 390 (1167)
++.+..++..... .+...+++..++..++..+...|++++|..++++++...|++...
T Consensus 242 ----------------~~~~~~L~~~~~~----~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~ 301 (409)
T TIGR00540 242 ----------------DEGIDGLLNWWKN----QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL 301 (409)
T ss_pred ----------------hcCHHHHHHHHHH----CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh
Confidence 0000001111110 000112356789999999999999999999999999999988763
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh--HHHHHHHHHHHHcCCHHHHHHHHHH--HhhhcCCChHHHHHHH
Q 001064 391 --WIRYVLCMEASGSMDLAHNALARATHVFVKRLP--EIHLFAARFKEQNGDIDGARAAYQL--VHTETSPGLLEAIIKH 464 (1167)
Q Consensus 391 --w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~--~l~~~~a~~~e~~g~~~~A~~~~~~--a~~~~~P~~~~~~~~~ 464 (1167)
...+.. + ..++.+.++..++++++.. |+++ .+...++.++.+.|++++|++.|++ + .+..|+... +..+
T Consensus 302 ~~l~~~~~-l-~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~-~~~L 376 (409)
T TIGR00540 302 PLCLPIPR-L-KPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDAND-LAMA 376 (409)
T ss_pred HHHHHhhh-c-CCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHH-HHHH
Confidence 222222 2 2477888999999999987 8899 8889999999999999999999994 5 567887766 5588
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
+.++.++|+.++|..+|++++...
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-14 Score=145.38 Aligned_cols=94 Identities=23% Similarity=0.456 Sum_probs=82.2
Q ss_pred ccccCCCCCCCCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC
Q 001064 1017 FEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP 1095 (1167)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~ 1095 (1167)
|.++.++... +.+-++|||+-|+++++|.+|+..|+.||+|+.|++ |++..||+++|||||+|++..++..|.+. .|
T Consensus 88 wdP~~dp~a~-gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikrirl-V~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 88 WDPNNDPNAI-GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRL-VRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred cCCCCCCccc-CCccceeeeeeccccccHHHHHHHHHhcCcceeEEE-eeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 4444444333 357899999999999999999999999999999974 89999999999999999999999999987 79
Q ss_pred CeeeCcEeEEEeccCCC
Q 001064 1096 IQLAGRQVYIEERRPNT 1112 (1167)
Q Consensus 1096 ~~i~g~~l~V~~~r~~~ 1112 (1167)
+.|+|+.|.|+.-+.+.
T Consensus 166 ~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 166 IKIDGRRILVDVERGRT 182 (335)
T ss_pred ceecCcEEEEEeccccc
Confidence 99999999998877554
|
|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-14 Score=158.02 Aligned_cols=82 Identities=24% Similarity=0.392 Sum_probs=72.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~~ 1107 (1167)
.++|||+|||.++|+++|+++|++||.|+.|.| ++++.+|++||||||+|.+.++|++||+. ++..+.| +.|+|.+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNI-LRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 368999999999999999999999999999886 56778999999999999999999999987 7888866 6799988
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++.+..
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876543
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-11 Score=133.71 Aligned_cols=414 Identities=12% Similarity=0.097 Sum_probs=254.6
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 76 GSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 155 (1167)
Q Consensus 76 ~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l 155 (1167)
.|+++.++..|-.+|.++|.|.-.+..-...+.++ +++.+|.+--.+.+.+.|+....|...+....-.|+|++|+..
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 37888888888888888888766665555555553 6788888888888888888888888888888888888888888
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Q 001064 156 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE-- 233 (1167)
Q Consensus 156 ~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~-- 233 (1167)
|..+|+..|.+..|.--+++... ..+.+ +.-+.+..+|.....-.+... .-....|..+++
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~~----------~~~~~-----~~~~~~p~~~~~l~~~p~t~~--~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAYL----------EDYAA-----DQLFTKPYFHEKLANLPLTNY--SLSDPAYVKILEII 155 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhhh----------HHHHh-----hhhccCcHHHHHhhcChhhhh--hhccHHHHHHHHHh
Confidence 88888888888777665555542 11111 122334566666665443321 122223333333
Q ss_pred -cchhhHHHHHHHHHHHHhcC-CCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHH-
Q 001064 234 -NPIQQLDRYFSSFKEFAASR-PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE- 310 (1167)
Q Consensus 234 -~p~~~~~~~~~~~~~~~~~~-~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~- 310 (1167)
..+.++..+.+ ...+.... .+..+..... +. .+ +........|. .....+. ..+.+...
T Consensus 156 ~~~p~~l~~~l~-d~r~m~a~~~l~~~~~~~~--------~~-----~~-~~~~~~~~~p~--~~~~~~~-~~~~d~~ee 217 (539)
T KOG0548|consen 156 QKNPTSLKLYLN-DPRLMKADGQLKGVDELLF--------YA-----SG-IEILASMAEPC--KQEHNGF-PIIEDNTEE 217 (539)
T ss_pred hcCcHhhhcccc-cHHHHHHHHHHhcCccccc--------cc-----cc-cccCCCCCCcc--cccCCCC-CccchhHHH
Confidence 23333322221 11110000 0000000000 00 00 00000000010 0000000 11111111
Q ss_pred HH-H----HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 001064 311 LE-K----YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA 385 (1167)
Q Consensus 311 ~~-~----~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p 385 (1167)
.+ + -....+....+.+++..++..|..+|. ++ ............+...|.+.+.+...+.++....
T Consensus 218 ~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e--------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr 288 (539)
T KOG0548|consen 218 RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE--------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR 288 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh--------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence 10 0 111123334466788899999999998 77 6677777777777777777777666666665422
Q ss_pred CCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH---------------------------HHHHH
Q 001064 386 NYPE-------YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH---------------------------LFAAR 431 (1167)
Q Consensus 386 ~~~~-------~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~---------------------------~~~a~ 431 (1167)
..-. ...+.+..+.+.++++.++..|++++..+. .+++. ...+.
T Consensus 289 e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R--t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 289 ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR--TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN 366 (539)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc--CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 1111 222233344455778888888988887552 11111 11233
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
-....|++..|...|.++ +..+|++..+|.+++..+.++|++..|....+++|+++|+ ....|+.-+..++.
T Consensus 367 e~Fk~gdy~~Av~~YteA-Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~------~~kgy~RKg~al~~- 438 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEA-IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN------FIKAYLRKGAALRA- 438 (539)
T ss_pred HHHhccCHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch------HHHHHHHHHHHHHH-
Confidence 345678999999999998 7889999999999999999999999999999999999853 35667777777665
Q ss_pred hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 512 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 512 ~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
..++++|.+.|.++++++|.+..+...|..--..
T Consensus 439 mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 8889999999999999999999988877766553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-11 Score=128.13 Aligned_cols=162 Identities=16% Similarity=0.137 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH-
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL- 396 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~- 396 (1167)
|.+.|...++...||.....+-+ +..++-+...+...++-..|+.+..+...+.||+.+|.+...+-.|-.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~ask--------Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASK--------LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHh--------ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 44455555666666666655544 555666677777777777888888888888888888776543322221
Q ss_pred -----HHH------HcCCHHHHHHHHHHHHHhhhccChHHH----HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001064 397 -----CME------ASGSMDLAHNALARATHVFVKRLPEIH----LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 397 -----~l~------~~g~~e~A~~vl~rA~~~~~p~~~~l~----~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
.++ ..+++.+++...++.++.. |..+.+. -..-.+...-+++-+|+..+.++ +.++|++..++
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev-L~~d~~dv~~l 344 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV-LDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CcccceeeeeeheeeecccccCCHHHHHHHHHHH-HhcCchHHHHH
Confidence 111 1233444444444444433 2222221 12223333455666666666665 55666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 462 IKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 462 ~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.+++.+.-...||.|+.-|++|++.++
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 6666666555566666666666666554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-12 Score=136.97 Aligned_cols=453 Identities=13% Similarity=0.035 Sum_probs=292.6
Q ss_pred ccccCCcCCcccccCCCCc-ccCCCCCC-CccCCCCcccccccCCCCchHHHHHHHHHHhCCC-CHHHHHHHHH----HH
Q 001064 35 AAGYNSMNGNVVNEAGNAT-STENGTSL-GIESGAAAGQELVDGSAMSGEEDRLWNIVKANSS-DFSAWTALLE----ET 107 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~-d~~aw~~L~~----~~ 107 (1167)
|++.|++|.-+.+|++-|. -|+|+... .-.+.+.++-++....++.++++.++-+|..-|. +-+....+.+ ..
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 5678888888889988776 46676543 3345777888877768899999999999888876 2222222221 11
Q ss_pred HhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC---C-----------HHHHH--
Q 001064 108 EKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY---S-----------VDIWL-- 171 (1167)
Q Consensus 108 ~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~---s-----------~~lw~-- 171 (1167)
-+ .|.++.|+..|+..++..|+.. .-+.++-.+...++-++.++.|.+++.+ |. + ..|..
T Consensus 287 iq--~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~i-p~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 287 IQ--AGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDI-PGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred Ee--cccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcC-CCCCCcccccCCcCCcchHHHHHH
Confidence 11 3788899999999999999764 4456777777889999999999998863 21 1 11111
Q ss_pred ----HHHHHHHhhcCCHHHHHHHH----------------HHHHHhcC--CC-CCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 172 ----HYCIFAINTYGDPETIRRLF----------------ERGLAYVG--TD-YLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 172 ----~ya~~~~~~~~~~~~Ar~~f----------------eral~~~g--~d-~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
++-+++.+...+-++++-.- +-+|..+. .+ .....|-..-+--+++++.++.|+.|+
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11223332222223322211 11111111 11 112334333344456678899998887
Q ss_pred HHHHhcchhhHHHHHHHHHH--HHh-cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCc
Q 001064 229 TRILENPIQQLDRYFSSFKE--FAA-SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL 305 (1167)
Q Consensus 229 ~r~l~~p~~~~~~~~~~~~~--~~~-~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~ 305 (1167)
.-.-..........-+.++. |.. .. ++..+...+ +....+.....
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk---~~~~aqqya----d~aln~dryn~------------------------- 490 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGK---DFADAQQYA----DIALNIDRYNA------------------------- 490 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhccc---chhHHHHHH----HHHhcccccCH-------------------------
Confidence 65444432221111111111 111 11 010001000 00000000000
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 001064 306 TEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA 385 (1167)
Q Consensus 306 ~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p 385 (1167)
. .+.-.+.+-..++++++|...|.++|. -|....+..++.+-.++..|+.++|+.+|-+.....-
T Consensus 491 ------~-a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 491 ------A-ALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred ------H-HhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 0 000011222346788889999999997 5666778888888888999999999999999888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 386 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 386 ~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
++.++.+.++.+++...+...|+++|-.+..+. |++|.+.-.+++++.+.|+...|..++-.. -+..|.+.+..--++
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sli-p~dp~ilskl~dlydqegdksqafq~~yds-yryfp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLI-PNDPAILSKLADLYDQEGDKSQAFQCHYDS-YRYFPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-CCCHHHHHHHHHHhhcccchhhhhhhhhhc-ccccCcchHHHHHHH
Confidence 999999999999999999999999999999887 899999999999999999999999887665 467888888733333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY-AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~-~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
.++....=.++++.+|++|.-+.|+. .-| +..+..+. ..|++.+|..+|+.....+|.+.+.+..++++--
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~-------~kwqlmiasc~r-rsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQ-------SKWQLMIASCFR-RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccH-------HHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 44444445689999999998887642 123 23344444 4999999999999999999999888777776665
Q ss_pred hCCC
Q 001064 545 IQSS 548 (1167)
Q Consensus 545 ~~~~ 548 (1167)
.+|-
T Consensus 706 dlgl 709 (840)
T KOG2003|consen 706 DLGL 709 (840)
T ss_pred cccc
Confidence 5553
|
|
| >KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=133.15 Aligned_cols=80 Identities=29% Similarity=0.467 Sum_probs=70.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
-.++||||||+..+++.+|+.+|..||+|.+ |+|-. .+.|||||||++..+|+.|+.. +|..|.|..|+||..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--vWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRS--VWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCccee--EEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3689999999999999999999999999999 45533 3579999999999999999987 799999999999998
Q ss_pred cCCCCCC
Q 001064 1109 RPNTGST 1115 (1167)
Q Consensus 1109 r~~~~~~ 1115 (1167)
+.+...+
T Consensus 83 ~G~~r~~ 89 (195)
T KOG0107|consen 83 TGRPRGS 89 (195)
T ss_pred cCCcccc
Confidence 8765543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-12 Score=138.48 Aligned_cols=440 Identities=14% Similarity=0.093 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC-CHHHHHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFL--AEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY-SVDIWLHY 173 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l--~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~-s~~lw~~y 173 (1167)
|...+.|++-++. .+...+|...|+-.+ +.||+...+-...+.++.++.+|.+|++.|+-+|..+|. +.+..+..
T Consensus 201 fsvl~nlaqqy~~--ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 201 FSVLFNLAQQYEA--NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHHHhhh--hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 5556677777765 356788999999888 468999888889999999999999999999999999984 44554444
Q ss_pred HHHHH---hhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHH-HH------
Q 001064 174 CIFAI---NTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDR-YF------ 243 (1167)
Q Consensus 174 a~~~~---~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~-~~------ 243 (1167)
.+-.- -+.|.++.|+..|++++...|.-.....|...| ...+.-++-++.|++++.+|..--+. +.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~----f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICA----FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhh----eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 33111 135899999999999999665432222222222 23577788889999999875432111 11
Q ss_pred --HHHHHHHhcCCCcccc-----cHHHHHHHHHHhhhCCCccc---hhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 244 --SSFKEFAASRPLSELR-----TAEEVDAAAVAVAAAPSETG---AEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 244 --~~~~~~~~~~~~~~~~-----~~ee~~~~~~~~~~~~~e~~---~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
+...+-+++-.+..++ .+|.++....++..-..+.. +-... +|......-+.+ ...
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc---------le~lk~s~~~~l-----a~d 420 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC---------LESLKASQHAEL-----AID 420 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH---------HHHHHHhhhhhh-----hhh
Confidence 0000000000000000 11111111111100000000 00000 000000000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHH------------HHHHHHHHH----------------
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN------------WHNYLDFIE---------------- 365 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~------------W~~y~~~~e---------------- 365 (1167)
+-......|.++++++.|+.++.-.-+..- .+.....+++-+ -..|++...
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdn-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDN-KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccc-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 000011235566677766665421111000 000000111111 111222111
Q ss_pred --HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHH
Q 001064 366 --RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 443 (1167)
Q Consensus 366 --~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 443 (1167)
-+||+++|...|+.+|..+....++.+..+...+.+|++++|+.+|-+.-.+. -++.++....+.+++...+...|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHH
Confidence 23788999999999999888888999999988889999999999998887776 678899999999999999999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 444 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILV 523 (1167)
Q Consensus 444 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ 523 (1167)
++|-++ ..+.|+++.++.++++++.+.|+...|..++-.....+|.+ .+....++.+ |....=.++|..+|+
T Consensus 579 e~~~q~-~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n------ie~iewl~ay-yidtqf~ekai~y~e 650 (840)
T KOG2003|consen 579 ELLMQA-NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN------IETIEWLAAY-YIDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHh-cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc------hHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 999998 78899999999999999999999999999988888888643 2222222222 222334688999999
Q ss_pred HHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001064 524 DSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 569 (1167)
Q Consensus 524 kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~ 569 (1167)
+|--..|+-..+.+..+.-..+.|+ ...+..+|......+|.+
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgn---yqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGN---YQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhCccc
Confidence 9887777655444333333333344 455666666666666654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-11 Score=139.47 Aligned_cols=291 Identities=8% Similarity=0.009 Sum_probs=215.8
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTAL-LEETEKLAQDNIVKIRRVYDAFLAEFPLCY-GYWKKYADHEARVGSMDKVVE 154 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L-~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~-~~W~~~a~~e~~~~~~e~A~~ 154 (1167)
|+++.+++.+.+.-+..+ +....+.+ ++.... .|+.+.+...|+++.+..|++. ......++++...|++++|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~--~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQ--RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888866665444322 23333444 444344 5899999999999999999985 344455899999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHh
Q 001064 155 VYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVA-MIYTRILE 233 (1167)
Q Consensus 155 l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~-~iy~r~l~ 233 (1167)
.+++.++..|.+..+....+..+. ..|++++|..++++..+....+ ... ..+.+ ..|...+.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~-~~gdw~~a~~~l~~l~k~~~~~---~~~-------------~~~l~~~a~~~l~~ 237 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYI-RTGAWSSLLDILPSMAKAHVGD---EEH-------------RAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHcCCCC---HHH-------------HHHHHHHHHHHHHH
Confidence 999999999999999999999998 6799999999999999854332 110 01000 01100000
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
. .... .+.+.+.+
T Consensus 238 ~--------------~~~~-----------------------------------------------------~~~~~l~~ 250 (398)
T PRK10747 238 Q--------------AMAD-----------------------------------------------------QGSEGLKR 250 (398)
T ss_pred H--------------HHHh-----------------------------------------------------cCHHHHHH
Confidence 0 0000 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
+ ++..-+ ..+++..++..|+..+...|+.++|..+.++++.. +.++++...
T Consensus 251 ~--------------------w~~lp~--------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l 301 (398)
T PRK10747 251 W--------------------WKNQSR--------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLL 301 (398)
T ss_pred H--------------------HHhCCH--------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHH
Confidence 0 111100 12344678899999999999999999999999995 778888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
|+.+. .++.++++..+++.++.+ |+++.+++.++.+..+.+++++|+..|+++ ++..|++.. +..++.++.++|+
T Consensus 302 ~~~l~--~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~a-l~~~P~~~~-~~~La~~~~~~g~ 376 (398)
T PRK10747 302 IPRLK--TNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAA-LKQRPDAYD-YAWLADALDRLHK 376 (398)
T ss_pred Hhhcc--CCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCHHH-HHHHHHHHHHcCC
Confidence 87753 488999999999999988 899999999999999999999999999998 788998654 5678889999999
Q ss_pred HHHHHHHHHHHHHhh
Q 001064 474 LEDAFSLYEQAIAIE 488 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~ 488 (1167)
.++|..+|++++...
T Consensus 377 ~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999865
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-10 Score=129.13 Aligned_cols=269 Identities=12% Similarity=0.085 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCC--------------------------CChhhHHHHHHHHHHHHH
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP--------------------------LSVTELENWHNYLDFIER 366 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~p--------------------------ld~~~~~~W~~y~~~~e~ 366 (1167)
+++..+.+.+....++.+....++..++..-||... ..|...-.|...+-|+.-
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence 344445555556667777777777776644444332 234455568888888888
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
.|.+.+|++.|-+|...++.+...|+.|+..+.-.+..|.|+..|.+|.++. +.+-.-.+..+.=+-+.++++-|...|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 8999999999999999999999999999999988899999999999999887 554444444454455688999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 447 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 447 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka 525 (1167)
.++ ..+.|.++-+..-.+.+....+.+.+|..+|+.++...+.... ......++..+|....+ .+.+++|...|+++
T Consensus 404 ~~A-~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 404 KQA-LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNKYEEAIDYYQKA 481 (611)
T ss_pred HHH-HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-HhhHHHHHHHHHHH
Confidence 998 7889999988887887777788999999999999965442111 11223467889988666 99999999999999
Q ss_pred HhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH-HHhhC
Q 001064 526 LDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF-LGLFG 593 (1167)
Q Consensus 526 l~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~f-e~~~G 593 (1167)
|.+.|.+...+-..+.+-.-+++ ++.+-..|.++|-..+++. -..+++...++- +...|
T Consensus 482 L~l~~k~~~~~asig~iy~llgn---ld~Aid~fhKaL~l~p~n~------~~~~lL~~aie~~~~~~~ 541 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGN---LDKAIDHFHKALALKPDNI------FISELLKLAIEDSECKSG 541 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCccH------HHHHHHHHHHHhhhhhcc
Confidence 99999999998866666655565 6668888999999888774 234567777666 44455
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=149.77 Aligned_cols=136 Identities=23% Similarity=0.377 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV-GSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 177 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~-~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~ 177 (1167)
.|..|.+.+.+. +.++.||++|+++++..+.+..+|..+|.+|... ++.+.|.+||+++|+.+|.+.++|+.|++|+
T Consensus 3 v~i~~m~~~~r~--~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRT--EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 689999998884 5799999999999976777899999999999985 5666699999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001064 178 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 237 (1167)
Q Consensus 178 ~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~ 237 (1167)
+ ..++.+.||.+|||++..++.+..+..||..|++||...|+++.++++++|+.+..+.
T Consensus 81 ~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 I-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp H-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred H-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9 6899999999999999988877656789999999999999999999999999986433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.9e-12 Score=140.87 Aligned_cols=150 Identities=13% Similarity=-0.041 Sum_probs=126.0
Q ss_pred CCCchHHHHHHHHHHhCCC----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSS----DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKV 152 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~----d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A 152 (1167)
...+.++.++.++|...|. ....|+.++..+..+ |+.++|+..|+++++.+|++..+|..++.++...|+++.|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4567889999999975553 366799999998875 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001064 153 VEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 153 ~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l 232 (1167)
+..|+++|++.|.+...|...+..+. ..|++++|.+.|+++++..|.++. ..+|.. +....+++++|...|.+.+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~---l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPY-RALWLY---LAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH---HHHccCCHHHHHHHHHHHH
Confidence 99999999999999999999998888 679999999999999997776531 134432 2234567888888887665
Q ss_pred h
Q 001064 233 E 233 (1167)
Q Consensus 233 ~ 233 (1167)
.
T Consensus 193 ~ 193 (296)
T PRK11189 193 E 193 (296)
T ss_pred h
Confidence 4
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-11 Score=135.77 Aligned_cols=408 Identities=12% Similarity=0.041 Sum_probs=263.4
Q ss_pred CcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHH
Q 001064 40 SMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIR 119 (1167)
Q Consensus 40 ~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar 119 (1167)
...||.+.||..|..+++.+|....++.--..-+...+++++++.--.+.++++|+...+|..++..+.-+ |++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l--g~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL--GDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc--ccHHHHH
Confidence 35799999999999999999998777655555566557899999999999999999999999999999875 8999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhC-----------------C-------HHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 120 RVYDAFLAEFPLCYGYWKKYADHEARVG-----------------S-------MDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 120 ~~ye~~l~~~P~~~~~W~~~a~~e~~~~-----------------~-------~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..|.+.|+.+|+|..+.-.+++.+.-.. + .+.+.......+...|.++.+.+. -.
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~-d~ 169 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN-DP 169 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc-cH
Confidence 9999999999999988888888772110 0 011111222223333444444333 12
Q ss_pred HHHhhcCCHHH--HHHHHHHHHH--hcCCCCC----------CHH-----------HHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 176 FAINTYGDPET--IRRLFERGLA--YVGTDYL----------SFP-----------LWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 176 ~~~~~~~~~~~--Ar~~feral~--~~g~d~~----------s~~-----------lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
.++...+..-. ....+..... ..+.++. ... -....+....+...+..+...|..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22211110000 0000000000 0000000 000 011111111122457777888888
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCC-CcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001064 231 ILENPIQQLDRYFSSFKEFAASRP-LSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309 (1167)
Q Consensus 231 ~l~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~ 309 (1167)
++++. .++..+-+....+..... ..-+...+.+ +++.. ....+..
T Consensus 250 a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a-----------------------------~E~gr----e~rad~k 295 (539)
T KOG0548|consen 250 ALELA-TDITYLNNIAAVYLERGKYAECIELCEKA-----------------------------VEVGR----ELRADYK 295 (539)
T ss_pred HHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHH-----------------------------HHHhH----HHHHHHH
Confidence 88776 444433332222211000 0000000000 00000 0001222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH
Q 001064 310 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE 389 (1167)
Q Consensus 310 ~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~ 389 (1167)
.+-+.+...+..|.+.+.++.++..|++++.- |.. -+.+.+....++++...++.....|.-.+
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte---~Rt-------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~ 359 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTE---HRT-------------PDLLSKLKEAEKALKEAERKAYINPEKAE 359 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh---hcC-------------HHHHHHHHHHHHHHHHHHHHHhhChhHHH
Confidence 23344445566788889999999999998862 111 23334556677788888887777776665
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 469 (1167)
--..-+.-+.+.|++..|...|.+||... |+++.+|-..|..+.+.|++..|++-.+.+ ++++|+....|++-+.++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~-ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC-IELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCchHHHHHHHHHHHHH
Confidence 55555777778899999999999999988 899999999999999999999999999998 8999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 470 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 470 r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
-+.++++|...|.++++.+|.+ -++...|.+..
T Consensus 438 ~mk~ydkAleay~eale~dp~~------~e~~~~~~rc~ 470 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSN------AEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchh------HHHHHHHHHHH
Confidence 9999999999999999998642 34555555543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=133.21 Aligned_cols=197 Identities=13% Similarity=0.078 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
+...|...+++++++..|+++++ .+|.+...|..++..+...|++++|+..|++++...|.+..+|..++.+
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKALE--------HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 35577888999999999999987 6677788899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001064 398 MEASGSMDLAHNALARATHVFV-KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 476 (1167)
+...|++++|...|++++.... +....++..++.++...|++++|...|+++ +..+|++..+|..++.++...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA-LQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987431 345678888899999999999999999998 77899999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
|..++++++...+. .+..+...+.+... .|+.++|+.+++.+....|
T Consensus 188 A~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 188 ARAYLERYQQTYNQ------TAESLWLGIRIARA-LGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhhCc
Confidence 99999999988532 24455566666555 8999999999888766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-11 Score=131.48 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|..++..+...|++++|+..|++++...|.+...|..++.++...|++++|...|++++... |....++..++.++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 56788888888899999999999999999999999999999999999999999999999999987 77889999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 434 EQNGDIDGARAAYQLVHTET--SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~--~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
...|++++|...|+++ +.. .+.....|..++.++...|++++|...|++++...+. .+.++..++.+++.
T Consensus 110 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~- 181 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQA-IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------RPESLLELAELYYL- 181 (234)
T ss_pred HHcccHHHHHHHHHHH-HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------ChHHHHHHHHHHHH-
Confidence 9999999999999998 443 2556678888999999999999999999999998764 25678888888776
Q ss_pred hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001064 512 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 563 (1167)
Q Consensus 512 ~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral 563 (1167)
.|++++|..+++++++..|.+...+...+.+....++ .+.++.+++.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHH
Confidence 9999999999999999988888777666666666555 344565555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-11 Score=134.55 Aligned_cols=359 Identities=14% Similarity=0.097 Sum_probs=229.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-Hh-ccCCCHHHHHHHHHHHHhhcCC-HHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA-VQ-GVTYSVDIWLHYCIFAINTYGD-PETIRR 189 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era-L~-~~P~s~~lw~~ya~~~~~~~~~-~~~Ar~ 189 (1167)
++.++||..|..+|..++.|.+....+...++-.- .+...+|+.. +. ..-.+++....+-....-.+-+ ....|.
T Consensus 155 ~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~--~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~ 232 (611)
T KOG1173|consen 155 DNREEARDKYKEALLADAKCFEAFEKLVSAHMLTA--QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRN 232 (611)
T ss_pred ccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcch--hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccC
Confidence 67788899999999999999888888877766432 1122222210 00 0011222222222211100000 000000
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH-HHHHHHHHHHhcCCCcccccHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD-RYFSSFKEFAASRPLSELRTAEEVDAAA 268 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~ee~~~~~ 268 (1167)
-=+.. .+.. ++.+|-..-++......++..+.++...++++.|-+.. ..+...+-++.... ..+ ... .
T Consensus 233 ~~~sl---~~l~-~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~-n~L---f~l---s 301 (611)
T KOG1173|consen 233 EDESL---IGLA-ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKS-NKL---FLL---S 301 (611)
T ss_pred chhhh---hhhh-hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhccc-chH---HHH---H
Confidence 00111 1111 13456666666666677888888888888887444321 11111111111100 000 000 0
Q ss_pred HHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCC
Q 001064 269 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP 348 (1167)
Q Consensus 269 ~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~p 348 (1167)
..+ ++..|.... . ++.+ +-.|.-.+++.+|++.|.++..
T Consensus 302 h~L----------------------V~~yP~~a~-------s---W~aV-g~YYl~i~k~seARry~SKat~-------- 340 (611)
T KOG1173|consen 302 HKL----------------------VDLYPSKAL-------S---WFAV-GCYYLMIGKYSEARRYFSKATT-------- 340 (611)
T ss_pred HHH----------------------HHhCCCCCc-------c---hhhH-HHHHHHhcCcHHHHHHHHHHhh--------
Confidence 000 001111100 0 2222 3456677899999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+|+.-...|..|+.-+--.++.+.|+.+|-+|-+..+....=.+-.+.=+...++++.|...|..|..++ |.+|-+...
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~E 419 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHE 419 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhh
Confidence 8999899999999988888999999999999999977544322333333445788999999999999999 899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhh---cCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTE---TSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~---~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
.+-+....+.+.+|...|+.++.. ..+.. ..+|..++...++++.+++|+..|+++|...|.+ +..+.
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~------~~~~a 493 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD------ASTHA 493 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc------hhHHH
Confidence 998888899999999999987422 12222 2347889999999999999999999999998643 66777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
..|.+... .|+++.|...|.++|-+.|++.
T Consensus 494 sig~iy~l-lgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 494 SIGYIYHL-LGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHhcCCccH
Confidence 77777555 9999999999999999999985
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-11 Score=124.48 Aligned_cols=183 Identities=14% Similarity=0.091 Sum_probs=159.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
...++--+.+.|++..|...++++|..+|.+...|.-.|.++...|..+.|.+.|++|+.+. |++.+++..|+.|++.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 33444445688999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 437 GDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
|++++|...|+++ +. +|.. ...|...+.+..+.|+++.|+.+|+++|+++|+. |.....+++.++. .|
T Consensus 117 g~~~eA~q~F~~A-l~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~-~~ 187 (250)
T COG3063 117 GRPEEAMQQFERA-LA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------PPALLELARLHYK-AG 187 (250)
T ss_pred CChHHHHHHHHHH-Hh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC------ChHHHHHHHHHHh-cc
Confidence 9999999999998 33 5554 4678888989999999999999999999999754 4567788899888 99
Q ss_pred CHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 514 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
++-.||-.+++-....+-....+.--+.|+...|+-
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccH
Confidence 999999999999887776665544667788777763
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-09 Score=114.99 Aligned_cols=302 Identities=17% Similarity=0.198 Sum_probs=221.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH-HHHHHHHHHH
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD-RYFSSFKEFA 250 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~-~~~~~~~~~~ 250 (1167)
.=++|++ .+++|+|..+|-..++ .|+....+-..++.+..+.|+.++|++|-+.++..|....+ +++
T Consensus 41 ~GlNfLL--s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l------- 108 (389)
T COG2956 41 KGLNFLL--SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL------- 108 (389)
T ss_pred hHHHHHh--hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH-------
Confidence 3346666 3678888888888888 56666778888888888889999998888888776554221 111
Q ss_pred hcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 251 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS 330 (1167)
Q Consensus 251 ~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~ 330 (1167)
.+..+...|+..+-++.
T Consensus 109 ---------------------------------------------------------------Al~qL~~Dym~aGl~DR 125 (389)
T COG2956 109 ---------------------------------------------------------------ALQQLGRDYMAAGLLDR 125 (389)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHhhhhhH
Confidence 11222445666777777
Q ss_pred HHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHH
Q 001064 331 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-----EYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 331 a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~-----~~w~~ya~~l~~~g~~e 405 (1167)
|-..|...+..+- --......++..|....++++|+.+-++.....+..- .++..+|+-+....+.+
T Consensus 126 AE~~f~~L~de~e--------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 126 AEDIFNQLVDEGE--------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHHHHHHHhcchh--------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 7777777665221 1234567778888888888888888888877755432 36777887777778999
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQA 484 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~~~~kA 484 (1167)
.|+..+.+|++.. |++..+-+.+++++...|++..|.+.++++ ++-+|+.. ++...+...+..+|+.++.+..+.++
T Consensus 198 ~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v-~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 198 RARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERV-LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999987 899999999999999999999999999998 77788865 45666777888999999999999999
Q ss_pred HHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChh----HHHHHHHHHH
Q 001064 485 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK----QIDFLEQLVD 560 (1167)
Q Consensus 485 l~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~----~~~~ar~l~e 560 (1167)
++..++ +.+-..++++.....| .+.|..++.+-|...|+-..++ .++.+.+.-.++. ....+|++..
T Consensus 276 ~~~~~g-------~~~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 276 METNTG-------ADAELMLADLIELQEG-IDAAQAYLTRQLRRKPTMRGFH-RLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHccCC-------ccHHHHHHHHHHHhhC-hHHHHHHHHHHHhhCCcHHHHH-HHHHhhhccccccchhhhHHHHHHHHH
Confidence 998865 2233444555454345 8999999999999999755444 6666666554332 2455666666
Q ss_pred HHhhcCC
Q 001064 561 KFLMSNS 567 (1167)
Q Consensus 561 ral~~~~ 567 (1167)
+-+..++
T Consensus 347 e~l~~~~ 353 (389)
T COG2956 347 EQLRRKP 353 (389)
T ss_pred HHHhhcC
Confidence 6555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-09 Score=126.59 Aligned_cols=417 Identities=12% Similarity=0.020 Sum_probs=280.2
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc--CCCHHHHHH
Q 001064 95 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV--TYSVDIWLH 172 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~--P~s~~lw~~ 172 (1167)
.|...|-.|.-.+.. -|++..+.+.||+++..-=...+.|..++.-+...|.-.+|..+.+.++... |.+.-..+.
T Consensus 321 nd~ai~d~Lt~al~~--~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSR--CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455555555555554 3789999999999998777778999999999999999999999999999998 777778888
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCC--CCCHHH----HHHHHHHHHHh-------hhHHHHHHHHHHHHhcchhhH
Q 001064 173 YCIFAINTYGDPETIRRLFERGLAYVGTD--YLSFPL----WDKYIEYEYMQ-------QEWSRVAMIYTRILENPIQQL 239 (1167)
Q Consensus 173 ya~~~~~~~~~~~~Ar~~feral~~~g~d--~~s~~l----w~~y~~~e~~~-------~~~~~A~~iy~r~l~~p~~~~ 239 (1167)
-.+.+++..+..+++...-.+++...+.. ...... -..|....... -.-.++...|++++++.+.|.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888877888888888888888754321 011111 12222211111 124667888999999988888
Q ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHH
Q 001064 240 DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVRE 319 (1167)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~ 319 (1167)
..+|...-.+...+.+.+... .+++. ... ...+.-.-|.+ ..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~-----~~~ea-L~l-----------------------------~~~~~~~~whL---LA 520 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALD-----YAREA-LAL-----------------------------NRGDSAKAWHL---LA 520 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHH-----HHHHH-HHh-----------------------------cCCccHHHHHH---HH
Confidence 888866555544332221110 00000 000 00011111223 23
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH--HH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV--LC 397 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya--~~ 397 (1167)
.++...+++..|+.+.+.++. .-+.|..+-.--+..+...+|.++++......|...-....+-.... ..
T Consensus 521 LvlSa~kr~~~Al~vvd~al~--------E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~ 592 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALE--------EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKL 592 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--------HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhh
Confidence 467777888888888888776 44455555555566666667777777666665544221111111111 11
Q ss_pred HHH-------cCCHHHHHHHHHHHHHhhh------------c------c-------ChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 398 MEA-------SGSMDLAHNALARATHVFV------------K------R-------LPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 398 l~~-------~g~~e~A~~vl~rA~~~~~------------p------~-------~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
+.. .++...|.+.+.++....- | . ...+|+..+.+..+.++.++|+.+
T Consensus 593 ~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C 672 (799)
T KOG4162|consen 593 LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC 672 (799)
T ss_pred hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 110 1122333333333322110 1 0 236888999999999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH--HHHHHHH
Q 001064 446 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE--KARQILV 523 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~--~Ar~i~~ 523 (1167)
+..+ ..++|-...+|+..+......|+.++|...|..|+.++|+. +.....+|.++.+ .|+.. ++|.++.
T Consensus 673 L~Ea-~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~~Ala~~lle-~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 673 LLEA-SKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSMTALAELLLE-LGSPRLAEKRSLLS 744 (799)
T ss_pred HHHH-HhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHH-hCCcchHHHHHHHH
Confidence 9988 77899999999999999999999999999999999999753 4466778888776 77554 4555999
Q ss_pred HHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 524 DSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 524 kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.+++.+|.+...|..+...-...|+ .+.+-.||.-+++....+|
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd---~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGD---SKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccc---hHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999988887 5567889999988776665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-11 Score=134.28 Aligned_cols=219 Identities=9% Similarity=-0.021 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~-~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e 405 (1167)
+.+.++..|.++|.+ .++++.+ ...|...+..+...|+.+.|+..|++++...|+++++|+.++.++...|+++
T Consensus 41 ~~e~~i~~~~~~l~~-----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 41 QQEVILARLNQILAS-----RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred HHHHHHHHHHHHHcc-----ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 344455567777753 2355544 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 485 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl 485 (1167)
+|...|++++++. |++...|+..+.++...|++++|...|+++ ++++|++... ..|..+....+++++|...|++++
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a-l~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAF-YQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999987 889999999999999999999999999998 7889998732 222334456789999999998877
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHH
Q 001064 486 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL-------DHVQLSKPLLEALIHFESIQSSPKQIDFLEQL 558 (1167)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal-------~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l 558 (1167)
...+. ..|. ++..... .|+..++ ..++.++ ++.|.....|..++......++ .+.+..+
T Consensus 193 ~~~~~--------~~~~-~~~~~~~-lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~---~~~A~~~ 258 (296)
T PRK11189 193 EKLDK--------EQWG-WNIVEFY-LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD---LDEAAAL 258 (296)
T ss_pred hhCCc--------cccH-HHHHHHH-ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 65421 1221 2222222 5655443 2334433 4445555667666776666666 6779999
Q ss_pred HHHHhhcCC
Q 001064 559 VDKFLMSNS 567 (1167)
Q Consensus 559 ~eral~~~~ 567 (1167)
|++++..++
T Consensus 259 ~~~Al~~~~ 267 (296)
T PRK11189 259 FKLALANNV 267 (296)
T ss_pred HHHHHHhCC
Confidence 999998765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-10 Score=135.02 Aligned_cols=396 Identities=13% Similarity=0.017 Sum_probs=272.5
Q ss_pred CCcCCcccccCCCCcccCCCC--CCCccCCCCcccccccC-CCCchHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhh
Q 001064 39 NSMNGNVVNEAGNATSTENGT--SLGIESGAAAGQELVDG-SAMSGEEDRLWNIVKAN-----SSDFSAWTALLEETEKL 110 (1167)
Q Consensus 39 ~~~~g~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~-~~~~~a~~~l~~~l~~n-----P~d~~aw~~L~~~~~~~ 110 (1167)
|+..|..-.|++-.+.-..+. |+.+-..+++.++..+. +-+++.++...+++..- -...-.+..++-.+..+
T Consensus 367 ~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~ 446 (799)
T KOG4162|consen 367 YSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ 446 (799)
T ss_pred HHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH
Confidence 344566667776555544444 44444566666666643 56677788888888722 11223333444433221
Q ss_pred h---------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHhh
Q 001064 111 A---------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV-TYSVDIWLHYCIFAINT 180 (1167)
Q Consensus 111 ~---------~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~-P~s~~lw~~ya~~~~~~ 180 (1167)
. .....++.+.++++++.+|+|+..-+.++-.+.-+++++.|....+++|+.. -++...|..++-.+- .
T Consensus 447 A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS-a 525 (799)
T KOG4162|consen 447 ARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS-A 525 (799)
T ss_pred hhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh-h
Confidence 0 1233578899999999999999999999999999999999999999999994 478899988887776 7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccc
Q 001064 181 YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRT 260 (1167)
Q Consensus 181 ~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1167)
.+++..|..+.+.++.-.|.| ..+...=+.++...++.+++.......|. +|+.-..+.... +
T Consensus 526 ~kr~~~Al~vvd~al~E~~~N---~~l~~~~~~i~~~~~~~e~~l~t~~~~L~--------~we~~~~~q~~~--~---- 588 (799)
T KOG4162|consen 526 QKRLKEALDVVDAALEEFGDN---HVLMDGKIHIELTFNDREEALDTCIHKLA--------LWEAEYGVQQTL--D---- 588 (799)
T ss_pred hhhhHHHHHHHHHHHHHhhhh---hhhchhhhhhhhhcccHHHHHHHHHHHHH--------HHHhhhhHhhhh--h----
Confidence 789999999999999977765 45566666777777777777666655442 332111110000 0
Q ss_pred HHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001064 261 AEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIR 340 (1167)
Q Consensus 261 ~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~ 340 (1167)
+....+ ... ++.-. ....++....-+++..... . ......++..+
T Consensus 589 --~g~~~~-----lk~----------------~l~la----~~q~~~a~s~sr~ls~l~a--~-----~~~~~~se~~L- 633 (799)
T KOG4162|consen 589 --EGKLLR-----LKA----------------GLHLA----LSQPTDAISTSRYLSSLVA--S-----QLKSAGSELKL- 633 (799)
T ss_pred --hhhhhh-----hhc----------------ccccC----cccccccchhhHHHHHHHH--h-----hhhhccccccc-
Confidence 000000 000 00000 0011111111112211100 0 01112244443
Q ss_pred CCCcccCCCCh----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 341 RPYFHVKPLSV----TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 341 r~~~~v~pld~----~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
|-+++.|-.. ....+|...++...+.+..+.+..+...+-..++.....|+..+..++..|..++|...|..|+.
T Consensus 634 -p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 -PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred -CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 4566666432 34567888888888889999999999999999999999999999999999999999999999999
Q ss_pred hhhccChHHHHHHHHHHHHcCCHHHHHH--HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 417 VFVKRLPEIHLFAARFKEQNGDIDGARA--AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~~g~~~~A~~--~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
+. |+++.+....|.++.+.|+..-|.+ ++..+ ++++|.+.++|+..+.+...+|+.++|-.+|.-|++++..
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~da-lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDA-LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 88 8999999999999999886555544 88887 8999999999999999999999999999999999999864
|
|
| >KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-13 Score=121.24 Aligned_cols=79 Identities=25% Similarity=0.313 Sum_probs=71.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+++||||||++.++|+.|.++|++||+|+.| |+--|+.+..+.||+||+|-+.++|..|+.- +|+.++.+.|+|++.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irri-iMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI-IMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchhee-EeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999996 3444666667889999999999999999998 899999999999976
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-10 Score=137.77 Aligned_cols=154 Identities=15% Similarity=0.095 Sum_probs=129.5
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 157 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~e 157 (1167)
....++..|-+++++++.-.-+|..|+.++... .+..+|+++|+++.++++.+...|...++.+....+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 456778899999999999999999999999985 488899999999999999999999999999999999999998865
Q ss_pred HHHhccC--CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001064 158 RAVQGVT--YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 235 (1167)
Q Consensus 158 raL~~~P--~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p 235 (1167)
+.-+..| ....-|.+..-++. ..++.-.+..-|+.++. .+|.+..+|..++....+.|++..|.++|.|+..+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyL-ea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYL-EAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhcccccc-CccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 5555443 24566777666666 46778888889999998 555567889999999999999999999999998875
Q ss_pred hh
Q 001064 236 IQ 237 (1167)
Q Consensus 236 ~~ 237 (1167)
|.
T Consensus 627 P~ 628 (1238)
T KOG1127|consen 627 PL 628 (1238)
T ss_pred cH
Confidence 54
|
|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=153.27 Aligned_cols=74 Identities=34% Similarity=0.481 Sum_probs=66.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcC--CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNF--GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++|||+||+.++|+++|+++|++| |.|++|++ .++||||+|++.++|.+||+. |+..|+|+.|+|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4789999999999999999999999 99998653 246999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-10 Score=118.19 Aligned_cols=330 Identities=9% Similarity=0.024 Sum_probs=196.0
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
.+|.|++-+++|+..+.. .+.+..|...|-.+++.+|+++.+.++-+..+...|.-.-|+.=+.|.|.+.|+-....+
T Consensus 33 ~~~advekhlElGk~lla--~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLA--RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 467888888888887765 378888999999999999999988888888898888888888888888888887766666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
.-+..++ ..|.++.|..-|...|+..+.+-.+ .+ .+.++. ..+..|.
T Consensus 111 QRg~vll-K~Gele~A~~DF~~vl~~~~s~~~~-----------------~e---aqskl~-----~~~e~~~------- 157 (504)
T KOG0624|consen 111 QRGVVLL-KQGELEQAEADFDQVLQHEPSNGLV-----------------LE---AQSKLA-----LIQEHWV------- 157 (504)
T ss_pred Hhchhhh-hcccHHHHHHHHHHHHhcCCCcchh-----------------HH---HHHHHH-----hHHHHHH-------
Confidence 6666666 5677777777777777644332000 00 011100 0011110
Q ss_pred cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 252 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK 331 (1167)
Q Consensus 252 ~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a 331 (1167)
++.. ..-+...++...+
T Consensus 158 --------------------------------------------------------------l~~q-l~s~~~~GD~~~a 174 (504)
T KOG0624|consen 158 --------------------------------------------------------------LVQQ-LKSASGSGDCQNA 174 (504)
T ss_pred --------------------------------------------------------------HHHH-HHHHhcCCchhhH
Confidence 0000 0011222334444
Q ss_pred HHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 332 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNAL 411 (1167)
Q Consensus 332 ~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl 411 (1167)
|......|+ +.|=...+...-++++...|++..|+.-++.+-+..-++.+..+....++...|+.+.++...
T Consensus 175 i~~i~~llE--------i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 175 IEMITHLLE--------IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred HHHHHHHHh--------cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444555554 333334445555666666677777777777777666666677777777776777777777777
Q ss_pred HHHHHhhhccChHHHHHHHH------------HHHHcCCHHHHHHHHHHHhhhcCCChHHHH----HHHHHHHHHcCCHH
Q 001064 412 ARATHVFVKRLPEIHLFAAR------------FKEQNGDIDGARAAYQLVHTETSPGLLEAI----IKHANMERRLGNLE 475 (1167)
Q Consensus 412 ~rA~~~~~p~~~~l~~~~a~------------~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~----~~~a~~e~r~g~~e 475 (1167)
+.++++. |+....+-+|-. -..+.+++.+++..+++. ++.+|....+. .........-+++-
T Consensus 247 RECLKld-pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~v-lk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 247 RECLKLD-PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKV-LKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHccC-cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCcccceeeeeeheeeecccccCCHH
Confidence 7777665 444333333221 123345555566666665 45566544332 22223334446666
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHH
Q 001064 476 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 476 ~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
+|+....++|...|.+ ..++..-+..+.. ...|+.|+.-|++|+++++++...-
T Consensus 325 eAiqqC~evL~~d~~d------v~~l~dRAeA~l~-dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 325 EAIQQCKEVLDIDPDD------VQVLCDRAEAYLG-DEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHHHHHhcCchH------HHHHHHHHHHHhh-hHHHHHHHHHHHHHHhcCcccHHHH
Confidence 6666666666666422 3455555554333 4456667777777776666665444
|
|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=144.81 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=75.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
.....++|||+|||+++|+++|+++|+.||.|++|+| +++..+++++|||||+|.+.++|++||+. ++..|.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i-~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRI-MRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3446799999999999999999999999999999986 66888999999999999999999999976 899999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 87653
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-09 Score=127.15 Aligned_cols=394 Identities=13% Similarity=0.150 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh--hcCCHHHHHHHHHH
Q 001064 116 VKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN--TYGDPETIRRLFER 193 (1167)
Q Consensus 116 ~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~--~~~~~~~Ar~~fer 193 (1167)
+.-+..++.-+..++.++.....|+.+..+.|++++.+..=..+..+.|.+..+|+.|+.-+.. ..++...+..+|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 3344556777777888888888889999999999999999999999999999999999986653 23566788899999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCCcccccHHH
Q 001064 194 GLAYVGTDYLSFPLWDKYIEYEYMQ-------QEWSRVAMIYTRILENPIQ---QLDRYFSSFKEFAASRPLSELRTAEE 263 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~~e~~~-------~~~~~A~~iy~r~l~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~ee 263 (1167)
+|. |+.+..||..|+.|.... +.++..|-+|.++|..-.. .-..+|..|.+|+..
T Consensus 176 al~----dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~----------- 240 (881)
T KOG0128|consen 176 ALG----DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVT----------- 240 (881)
T ss_pred Hhc----ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHH-----------
Confidence 994 778899999999999875 4578899999999875222 224455445444221
Q ss_pred HHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001064 264 VDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPY 343 (1167)
Q Consensus 264 ~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~ 343 (1167)
|..+.+.++.+..|...+..|+
T Consensus 241 ----------------------------------------------------------~l~n~~~~qv~a~~~~el~~~~ 262 (881)
T KOG0128|consen 241 ----------------------------------------------------------YLCNVEQRQVIALFVRELKQPL 262 (881)
T ss_pred ----------------------------------------------------------HHHhHHHHHHHHHHHHHHhccc
Confidence 1112222333334455544332
Q ss_pred cccCCCChhhHHHHH--HHHHHHH-----HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 344 FHVKPLSVTELENWH--NYLDFIE-----RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 344 ~~v~pld~~~~~~W~--~y~~~~e-----~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
++-. --.++.-|. .+.+.+. ...+..+.+..+++.+...+....-|+.|+.+....|+.-.-..+++|++.
T Consensus 263 D~~~--~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 263 DEDT--RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred hhhh--hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 2100 011122222 1111111 111233456667777777777777899999999999998888889999988
Q ss_pred hhhccChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCcc
Q 001064 417 VFVKRLPEIHLFAARFKEQ-NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHS 494 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~-~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~-~e~A~~~~~kAl~~~~~~~~~ 494 (1167)
-. +....+|+.|+.++-. .+-.+.+..++-++ ++.+|-...+|-++...+.|.+. .......+++++..-
T Consensus 341 E~-~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra-~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~------ 412 (881)
T KOG0128|consen 341 EM-VLDRALWIGYGVYLDTELKVPQRGVSVHPRA-VRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT------ 412 (881)
T ss_pred hc-cccHHHHhhhhhhcccccccccccccccchh-hcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH------
Confidence 66 5679999999877643 44445567778887 78889888999887755555443 445556677776653
Q ss_pred CchHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhhc----CC----CHHHHHHHHHhHhhCCChhHHHHHHHHHHH
Q 001064 495 QTLPMLYAQYSRFLHLV-----SRNAEKARQILVDSLDHV----QL----SKPLLEALIHFESIQSSPKQIDFLEQLVDK 561 (1167)
Q Consensus 495 ~~~~~l~~~~a~~~~~~-----~g~~~~Ar~i~~kal~~~----p~----~~~l~~~~~~~e~~~~~~~~~~~ar~l~er 561 (1167)
..++..|..+..+. ..+++.-|+.|..|.... .+ ...++..++.+|.++.. +.+..|.++..
T Consensus 413 ---~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~--nmd~~R~iWn~ 487 (881)
T KOG0128|consen 413 ---VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK--NMDKAREIWNF 487 (881)
T ss_pred ---HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--chhhhhHhhhc
Confidence 12333333332221 224566667777776531 11 23566688999988642 26778999988
Q ss_pred HhhcCCCCCCCCCHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001064 562 FLMSNSDSPSTANAAEREE-LSCVFLEFLGLFGDAQLIKKAEDRHA 606 (1167)
Q Consensus 562 al~~~~~~~~~l~~~~~~~-i~~~~l~fe~~~Gd~~~~~~v~~r~~ 606 (1167)
.+..... +.. .|..|+..|..||+..++++++.+..
T Consensus 488 imty~~~---------~iag~Wle~~~lE~~~g~~~~~R~~~R~ay 524 (881)
T KOG0128|consen 488 IMTYGGG---------SIAGKWLEAINLEREYGDGPSARKVLRKAY 524 (881)
T ss_pred cccCCcc---------hHHHHHHHHHhHHHHhCCchhHHHHHHHHH
Confidence 7776432 223 79999999999999999999655543
|
|
| >KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-12 Score=131.31 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=73.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
|..-++||||||+|.++.+.|+++|++||+|.+..| |.|+.+|++||||||+|.|.++|.+|++.....|+||+..+..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavv-itd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVV-ITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEE-EeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 445689999999999999999999999999999854 7799999999999999999999999999878899999988875
Q ss_pred c
Q 001064 1108 R 1108 (1167)
Q Consensus 1108 ~ 1108 (1167)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 4
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-11 Score=136.97 Aligned_cols=232 Identities=12% Similarity=0.152 Sum_probs=158.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
.|++.+|.-+||.++..+|.+.++|..++......++-..|+..++|||++.|++.++...++--+. ..+.-..|...+
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt-Neg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT-NEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhHHHHHHHH
Confidence 4778888889999999999999999999988888888888999999999999999888888777666 445566788888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHh
Q 001064 192 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 271 (1167)
Q Consensus 192 eral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~ 271 (1167)
++.|...+.. .|..-.. ..+.+..- ... .....+..+-..|.......+
T Consensus 377 ~~Wi~~~p~y-----~~l~~a~---~~~~~~~~----~s~--~~~~~l~~i~~~fLeaa~~~~----------------- 425 (579)
T KOG1125|consen 377 DKWIRNKPKY-----VHLVSAG---ENEDFENT----KSF--LDSSHLAHIQELFLEAARQLP----------------- 425 (579)
T ss_pred HHHHHhCccc-----hhccccC---ccccccCC----cCC--CCHHHHHHHHHHHHHHHHhCC-----------------
Confidence 8888743321 1111100 00000000 000 000001111111111100000
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh
Q 001064 272 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 351 (1167)
Q Consensus 272 ~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~ 351 (1167)
.+ ++ . ++-..++.+|.-.++|++++..|+.+|. .+|
T Consensus 426 ----~~-------~D---------------------p----dvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~P 461 (579)
T KOG1125|consen 426 ----TK-------ID---------------------P----DVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKP 461 (579)
T ss_pred ----CC-------CC---------------------h----hHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCC
Confidence 00 00 0 0223335578888899999999999987 777
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 352 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 419 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~ 419 (1167)
++..+|.+|+..+-...+.++|+..|.|||.+-|.+..+|+.++......|.+++|...|-+||.+..
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 88889999998888888888999999999999999999999999888888999999999988888774
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-09 Score=119.69 Aligned_cols=393 Identities=11% Similarity=0.106 Sum_probs=215.0
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
++|.+-++.++++|+..|...+..-..|-.+-.+ |+.++|-..-...+.-++.+.--|.-++-+....++|++|+++|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 5666666777777777777777666666666554 56666666666777777666666777777777777777777777
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc-
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP- 235 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p- 235 (1167)
+.||+..|+|..+|..++-+-. +.++++.....-.+.++..+. ...-|..|+.-....+++..|..|.+...+.-
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LLql~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQLLQLRPS---QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777777777776665555 566666666665556654333 24556666665555566666665555544421
Q ss_pred --hhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 236 --IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
+...+.-+.+...+.+.. .-+....+++. .....++. ....-..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i-~~E~g~~q~al--------------e~L~~~e~-------------------~i~Dkla 220 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQI-LIEAGSLQKAL--------------EHLLDNEK-------------------QIVDKLA 220 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHH-HHHcccHHHHH--------------HHHHhhhh-------------------HHHHHHH
Confidence 221111111111110000 00000000000 00000000 0001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhcCCC-----
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE-RDGDFNKVVKLYERCLIACANY----- 387 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e-~~g~~~~a~~~yeral~~~p~~----- 387 (1167)
+...++.++.+.+++++|+..|...|. .+|++++.+..|...+- -.+..+....+|.+.-...|..
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~--------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLE--------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHh--------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 455667788899999999999999988 46666655555544432 2222333335565543332211
Q ss_pred --------HHHHHHHHHHHH---HcC-------------CHHHHHHHHHHHHHhhh------------------ccChHH
Q 001064 388 --------PEYWIRYVLCME---ASG-------------SMDLAHNALARATHVFV------------------KRLPEI 425 (1167)
Q Consensus 388 --------~~~w~~ya~~l~---~~g-------------~~e~A~~vl~rA~~~~~------------------p~~~~l 425 (1167)
.++-..+-.++. +.| +.... .++++.+..+. |-.+.+
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 111111111111 111 11111 13333332221 011233
Q ss_pred HHH--HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001064 426 HLF--AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 503 (1167)
Q Consensus 426 ~~~--~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~ 503 (1167)
|.. .+.-.-..|+++.|...++.+ +.-.|..++.++..+.+..-.|++++|-.++++|.+++..+ -.|--+
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~A-IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD------R~INsK 444 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLA-IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD------RAINSK 444 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh------HHHHHH
Confidence 433 344445678888888888887 66778888888888888888888888888888887776321 112235
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 001064 504 YSRFLHLVSRNAEKARQILVDSL 526 (1167)
Q Consensus 504 ~a~~~~~~~g~~~~Ar~i~~kal 526 (1167)
.+.+..+ .+++++|.++..+--
T Consensus 445 cAKYmLr-An~i~eA~~~~skFT 466 (700)
T KOG1156|consen 445 CAKYMLR-ANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHH-ccccHHHHHHHHHhh
Confidence 6777666 777888877766543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-10 Score=122.46 Aligned_cols=312 Identities=10% Similarity=0.039 Sum_probs=237.6
Q ss_pred HHhCCCCHHHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 90 VKANSSDFSAWT---ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 90 l~~nP~d~~aw~---~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
+...|.+.+.|. .+++.+.. .....-+..++-..+..+|+|..+.-.+++++...|+++.|+..|++++.++|+.
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~--~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~ 265 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNF--KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN 265 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhc--ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh
Confidence 344566655555 33333332 2233445667778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHH
Q 001064 167 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 246 (1167)
Q Consensus 167 ~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~ 246 (1167)
+.---.|+-++- ..|+++..-.+..+.+.....+ ..=|..-+..+...+++.+|.-.=.+++...+.+...+.-.
T Consensus 266 i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~~t---a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilK- 340 (564)
T KOG1174|consen 266 VEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVKYT---ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILK- 340 (564)
T ss_pred hhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhhcc---hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhc-
Confidence 999999988887 7899998888888777643221 23455555545555667777666666666655554444311
Q ss_pred HHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH
Q 001064 247 KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK 326 (1167)
Q Consensus 247 ~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~ 326 (1167)
+......+
T Consensus 341 ------------------------------------------------------------------------G~lL~~~~ 348 (564)
T KOG1174|consen 341 ------------------------------------------------------------------------GRLLIALE 348 (564)
T ss_pred ------------------------------------------------------------------------cHHHHhcc
Confidence 23345667
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH-HHH-HHcCCH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV-LCM-EASGSM 404 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya-~~l-~~~g~~ 404 (1167)
+.++|+..|..++. +-|..++.+.-++..|...|.+.+|+.+-..++...+.+.....-++ ..+ ....--
T Consensus 349 R~~~A~IaFR~Aq~--------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQM--------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred chHHHHHHHHHHHh--------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 77888889999987 77888999999999999999999999999999988888877666553 222 222345
Q ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 405 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 484 (1167)
Q Consensus 405 e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kA 484 (1167)
++|.+.|++++.+. |.....-...|.++...|.+..+.+++++. +...|+ ..++..++++....+.+.++.+.|..|
T Consensus 421 EKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~-L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKH-LIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHH-Hhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 78999999999987 788888888899999999999999999997 554554 567788889998899999999999999
Q ss_pred HHhhhCC
Q 001064 485 IAIEKGK 491 (1167)
Q Consensus 485 l~~~~~~ 491 (1167)
|.++|++
T Consensus 498 Lr~dP~~ 504 (564)
T KOG1174|consen 498 LRQDPKS 504 (564)
T ss_pred HhcCccc
Confidence 9999754
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-11 Score=127.51 Aligned_cols=192 Identities=15% Similarity=0.185 Sum_probs=126.9
Q ss_pred cccccCC-cCCcccccCCCCcccCCCCCCC--ccC--CCCcccccccCCCCchHHHHHHHHHHhCCC-------CHHHHH
Q 001064 34 QAAGYNS-MNGNVVNEAGNATSTENGTSLG--IES--GAAAGQELVDGSAMSGEEDRLWNIVKANSS-------DFSAWT 101 (1167)
Q Consensus 34 ~~~~~~~-~~g~~~~~~~~~~~v~~~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~-------d~~aw~ 101 (1167)
+.....| ..|..++|+.-.+.+...-+-. ..+ .+-..+.... .+ -.|-++-++||. -..+.+
T Consensus 112 ~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~---~d---G~f~nlsRLN~tkYa~~p~l~kaLF 185 (478)
T KOG1129|consen 112 SRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAF---ND---GKFYNLSRLNPTKYAERPTLVKALF 185 (478)
T ss_pred cCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhcc---CC---cceeehhhcCchhhccChHHHHHHH
Confidence 3445545 6788888886555544433211 111 1111111111 00 123344444544 445555
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhC---CC----C-H-HHHH-HHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEF---PL----C-Y-GYWK-KYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~---P~----~-~-~~W~-~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
+++-+++ +++.+|.......++.. |. + . .+|+ .+++.+.+.|-+.+|++-|+..|+.. ..+|-++
T Consensus 186 ey~fyhe----nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfl 260 (478)
T KOG1129|consen 186 EYLFYHE----NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFL 260 (478)
T ss_pred HHHHHhh----hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHH
Confidence 6665554 58888887766666553 21 2 2 3444 46888999999999999999999988 4678888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD 240 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~ 240 (1167)
.+.+.+. ..+.+..|..+|..+|+..|.| ..+...-+++.+..++.+.+.++|+++++..+.|++
T Consensus 261 lLskvY~-ridQP~~AL~~~~~gld~fP~~---VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 261 LLSKVYQ-RIDQPERALLVIGEGLDSFPFD---VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HHHHHHH-HhccHHHHHHHHhhhhhcCCch---hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 8888888 6789999999999999987765 556666777777788889999999998887666554
|
|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-12 Score=145.75 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=76.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..+++|||+|||+++++++|+++|++||.|.+|+| ++++.+|++||||||+|.+.++|.+||.. ||..|+||.|+|++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i-~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKI-IRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-eEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35689999999999999999999999999999986 66788999999999999999999999986 89999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
+..+.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 87653
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.7e-12 Score=123.59 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=73.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
-.+|-|-||.+.++.++|+.+|++||.|-+|.| -+|+.|+.++|||||-|.+..+|+.|+++ +|.+|+|+.|+|..++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyI-Prdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYI-PRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceec-ccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 478999999999999999999999999999865 56888999999999999999999999988 7999999999999876
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
=
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
|
|
| >KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=130.20 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=70.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|+|.|||+...+.||+.+|.+||+|.+|.|+.-++ | +||||||+|++.++|++|-++ +|..|.||+|.|..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--G-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--G-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--C-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 458999999999999999999999999999998755333 3 799999999999999999987 899999999999877
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
..|
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-09 Score=126.67 Aligned_cols=182 Identities=12% Similarity=0.009 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 370 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 370 ~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
...+..+|-|++..++.....|..+++++....++..|..+|.+|.++. +.....+-..++.+.+..+.++|..+.-++
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4456777777888888888888888888876667778888888888876 677777777888887888888888775554
Q ss_pred hhhcCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001064 450 HTETSPGLL--EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 527 (1167)
Q Consensus 450 ~~~~~P~~~--~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~ 527 (1167)
.+..|... ..|..++-++...+++..++..|+.|+..+|.+ -..|..+|..+.. .|++..|.++|.||..
T Consensus 553 -~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~-sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 -AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPE-SGRYSHALKVFTKASL 624 (1238)
T ss_pred -hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHh-cCceehHHHhhhhhHh
Confidence 34444332 347778888888889999999999999988643 5689999999665 9999999999999999
Q ss_pred hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001064 528 HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 563 (1167)
Q Consensus 528 ~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral 563 (1167)
++|.+......-+.++...|. .+.+...++..+
T Consensus 625 LrP~s~y~~fk~A~~ecd~Gk---Ykeald~l~~ii 657 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGK---YKEALDALGLII 657 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhh---HHHHHHHHHHHH
Confidence 999987666556666665543 333444444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-08 Score=114.39 Aligned_cols=406 Identities=11% Similarity=0.081 Sum_probs=238.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 181 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~ 181 (1167)
..+..++. +.+.+..++.+..|+.||..++-.-..+-.+...|+.++|-...+++|..++.|.--|.-|+-+.. ..
T Consensus 13 ~~lk~yE~---kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~d 88 (700)
T KOG1156|consen 13 RALKCYET---KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SD 88 (700)
T ss_pred HHHHHHHH---HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hh
Confidence 44555664 689999999999999999999999889999999999999999999999999999999999988888 66
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccH
Q 001064 182 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 261 (1167)
Q Consensus 182 ~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1167)
.++++|+..|..||...+. .-.||.++..+-...+.++.....-.+.|+..+.+...|+........... .
T Consensus 89 K~Y~eaiKcy~nAl~~~~d---N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~------y 159 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKD---NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE------Y 159 (700)
T ss_pred hhHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH------H
Confidence 8999999999999995544 589999999988888999999888889999877655444422211100000 0
Q ss_pred HHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001064 262 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK--YIAVREEMYKKAKEFDSKIIGFETAI 339 (1167)
Q Consensus 262 ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~--~i~~~~~~y~~~~~~~~a~~~~e~al 339 (1167)
..+. ..+.+... ..+ ...+...++. .+..+..+..+++.+.+++..+.+.-
T Consensus 160 ~~A~-------~il~ef~~---t~~-----------------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 160 KMAL-------EILEEFEK---TQN-----------------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHH-------HHHHHHHH---hhc-----------------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 0000 00000000 000 0011111111 11112223333444444443332211
Q ss_pred cCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 001064 340 RRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME-ASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 340 ~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~-~~g~~e~A~~vl~rA~~~~ 418 (1167)
+ .--+.+..-..-++++.+.+++++|..+|.+.+..+|++.+.+..+-.++. -.+..+....+|...-+.+
T Consensus 213 ~--------~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 213 K--------QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred h--------HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 1 111223334445778889999999999999999999999888887777664 2333333336666665554
Q ss_pred hccChHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhh-----
Q 001064 419 VKRLPEIHLFAARFKEQNGDIDGA-RAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQAIAIEK----- 489 (1167)
Q Consensus 419 ~p~~~~l~~~~a~~~e~~g~~~~A-~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g---~~e~A~~~~~kAl~~~~----- 489 (1167)
|...-+...--.++.- .++... ..++...+..-.|. +......++..-. =+++-..-|...+.-..
T Consensus 285 -~r~e~p~Rlplsvl~~-eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 285 -PRHECPRRLPLSVLNG-EELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -cccccchhccHHHhCc-chhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 4332222222222211 122222 22222221111121 1111111211100 01222222222222110
Q ss_pred --CCCccCchHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 490 --GKEHSQTLPMLYAQY--SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 490 --~~~~~~~~~~l~~~~--a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
+.. .+-...+|..| +.- +...|+++.|..++..|+.+.|.-.+++..-+++-...|+ ++.+-.+++++...
T Consensus 360 D~~~~-E~PttllWt~y~laqh-~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~---l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 360 DDGKQ-EPPTTLLWTLYFLAQH-YDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGL---LDEAAAWLDEAQEL 434 (700)
T ss_pred ccccc-CCchHHHHHHHHHHHH-HHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhc
Confidence 000 11123355332 333 2348999999999999999999988888777777766666 56677777777554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=123.12 Aligned_cols=220 Identities=11% Similarity=0.040 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCC
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANY 387 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g-~~~~a~~~yeral~~~p~~ 387 (1167)
++..+.+.....++...+..++|+..++++|+ ++|.+..+|......+...+ ++++++..+++++..+|.+
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~--------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn 105 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIR--------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN 105 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence 45556666667788888899999999999998 89999999999988888887 6799999999999999999
Q ss_pred HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 388 PEYWIRYVLCMEASGSM--DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~--e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
..+|...+.++...+.. ++++..+++++++. |++..+|...+-++...|+++++++.++++ ++++|.+..+|..+.
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~-I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQL-LEEDVRNNSAWNQRY 183 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHCCCchhHHHHHH
Confidence 99999998888887763 67899999999988 899999999999999999999999999998 788999999999998
Q ss_pred HHHHHc---CCH----HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhcCCCHHH
Q 001064 466 NMERRL---GNL----EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPL 535 (1167)
Q Consensus 466 ~~e~r~---g~~----e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~i~~kal~~~p~~~~l 535 (1167)
.+..+. |++ ++...+..++|...|.+ ..+|..+..++... .++..+|...+.++++..|.+...
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRN------ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCCC------cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH
Confidence 777665 333 57888888999999865 34776666664431 245577999999999988998877
Q ss_pred HHHHHHhHh
Q 001064 536 LEALIHFES 544 (1167)
Q Consensus 536 ~~~~~~~e~ 544 (1167)
+..++++-.
T Consensus 258 l~~l~d~~~ 266 (320)
T PLN02789 258 LSDLLDLLC 266 (320)
T ss_pred HHHHHHHHH
Confidence 776666554
|
|
| >KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-11 Score=122.36 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=76.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+..+|-|.||+.++++++|+++|.+||.|.+|.+ .+|+.||.+||||||.|.+.++|.+||.. ||+-++.-.|+||++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyl-ardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYL-ARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEE-EEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 5688999999999999999999999999999864 88999999999999999999999999987 899999999999999
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 985
|
|
| >PF00076 RRM_1: RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=105.47 Aligned_cols=69 Identities=35% Similarity=0.566 Sum_probs=62.7
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1034 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
|||+|||.++|+++|+++|++||.|..+.+.. + .+++.+|||||+|.+.++|++|++. +|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~-~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR-N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE-E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc-c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999876533 3 6678999999999999999999985 99999999885
|
(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A .... |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-09 Score=120.09 Aligned_cols=201 Identities=11% Similarity=0.047 Sum_probs=160.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCH
Q 001064 361 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI 439 (1167)
Q Consensus 361 ~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g-~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~ 439 (1167)
-..+...+..++|+.+++++|..+|.+..+|...+.++...+ ++++++..++++++.+ |++..+|...+.++...|+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 334456778999999999999999999999999999999888 5799999999999988 88999999999888888863
Q ss_pred --HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---CC
Q 001064 440 --DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---RN 514 (1167)
Q Consensus 440 --~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~---g~ 514 (1167)
++++.+++++ ++++|++..+|..++.+..++|++++++..++++|+.++.+ ..+|.+.+.++.. . |+
T Consensus 123 ~~~~el~~~~ka-l~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~-~~~l~~ 194 (320)
T PLN02789 123 AANKELEFTRKI-LSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITR-SPLLGG 194 (320)
T ss_pred hhHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHh-cccccc
Confidence 6789999998 78999999999999999999999999999999999998654 4578777655443 3 22
Q ss_pred ----HHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh-hHHHHHHHHHHHHhhcCCCCC
Q 001064 515 ----AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP-KQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 515 ----~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~-~~~~~ar~l~eral~~~~~~~ 570 (1167)
.+++..+..++|+.+|++...|..+..+....+.. .....+...+++++...+.+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 35788888999999999999997555555442221 111225555666666554433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=123.51 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=109.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 181 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~ 181 (1167)
.+++.+..+ +-..+|.+.++..|+.+|. ++.++.+.+.|.+.++.+.|..+|...|..+|.++.+..--+++.. ..
T Consensus 228 Q~gkCylrL--gm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e-am 303 (478)
T KOG1129|consen 228 QMGKCYLRL--GMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE-AM 303 (478)
T ss_pred HHHHHHHHh--cChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH-HH
Confidence 788888886 6889999999999999997 4778889999999999999999999999999999999999998887 67
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhH
Q 001064 182 GDPETIRRLFERGLAYVGTDYLSF-PLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQL 239 (1167)
Q Consensus 182 ~~~~~Ar~~feral~~~g~d~~s~-~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~ 239 (1167)
++.+++.++|.++++..+.|.++. -|-..|.. .++.+-|.+.|+|+|+.-..+.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYRRiLqmG~~sp 358 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYRRILQMGAQSP 358 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHHHHHHhcCCCh
Confidence 899999999999999888776641 22333333 4678999999999998755433
|
|
| >PLN03120 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-11 Score=126.46 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=69.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEeccC
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r~ 1110 (1167)
.++|||+|||+.+|+++|+++|+.||.|.+|.| ++++. .+|||||+|++.++++.||..+|..|+|+.|+|..++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I-~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEM-QSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 589999999999999999999999999999876 44442 56899999999999999998899999999999998875
Q ss_pred C
Q 001064 1111 N 1111 (1167)
Q Consensus 1111 ~ 1111 (1167)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
|
|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-11 Score=140.34 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=75.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
..+|||+|||.++++++|+++|++||+|.+|+| ++++.+|+++|||||+|.+.++|.+||+. +|..|.|+.|+|++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i-~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKL-VRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEE-EEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 489999999999999999999999999999986 67888899999999999999999999976 8999999999999887
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-07 Score=105.60 Aligned_cols=445 Identities=13% Similarity=0.073 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH-HHHHHHHH
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD-IWLHYCIF 176 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~-lw~~ya~~ 176 (1167)
+.|+.|-+... ++++++|.+...++|...|++..+..--.-..++.+.|++|.++.+.-....-.++- +=..||.|
T Consensus 14 ~l~t~ln~~~~---~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGK---NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhcc---chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 55666666544 489999999999999999999988888888888999999998777665442222222 34455555
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCc
Q 001064 177 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256 (1167)
Q Consensus 177 ~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~ 256 (1167)
..+..|+|...++ |.+.....+-..++.+..+++++++|.+||+.+++....+++.-...-..-....
T Consensus 91 ---rlnk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--- 158 (652)
T KOG2376|consen 91 ---RLNKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--- 158 (652)
T ss_pred ---HcccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---
Confidence 5688999999888 3444456688888999999999999999999998875554433321100000000
Q ss_pred ccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 257 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 336 (1167)
Q Consensus 257 ~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e 336 (1167)
-... +... .| ..+.++ .. .+--...++...++|.+|++.++
T Consensus 159 -----l~~~-----~~q~---------------v~-----------~v~e~s--ye-l~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 159 -----LQVQ-----LLQS---------------VP-----------EVPEDS--YE-LLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred -----hhHH-----HHHh---------------cc-----------CCCcch--HH-HHHHHHHHHHhcccHHHHHHHHH
Confidence 0000 0000 00 000000 00 11111234555667777777777
Q ss_pred hhhcCCCcccCCCChh---------hHHHHH-HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCC--
Q 001064 337 TAIRRPYFHVKPLSVT---------ELENWH-NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGS-- 403 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~---------~~~~W~-~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~-~g~-- 403 (1167)
.+++- --..+... ++..-+ .+.-.+...|+.+++..+|..++..++.+..+-.-...-+.. .++
T Consensus 200 kA~~~---~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 200 KALRI---CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHH---HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccc
Confidence 66430 00001100 111111 111112344666666666666666655444322111111111 010
Q ss_pred -HH-HHHHHHHHHHHhh--------h-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHHHHHc
Q 001064 404 -MD-LAHNALARATHVF--------V-KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANMERRL 471 (1167)
Q Consensus 404 -~e-~A~~vl~rA~~~~--------~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~e~r~ 471 (1167)
++ .++..++..+..+ . .....++...+.+..-.+..+.++++..+. -...|... .+.+.-+... +.
T Consensus 277 ~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l-p~~~p~~~~~~ll~~~t~~-~~ 354 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL-PGMSPESLFPILLQEATKV-RE 354 (652)
T ss_pred cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC-CccCchHHHHHHHHHHHHH-HH
Confidence 00 0111111111100 0 011222333333333334444444443332 12223222 2233333222 22
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------cCCCHHHHHHHHHhHh
Q 001064 472 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-------VQLSKPLLEALIHFES 544 (1167)
Q Consensus 472 g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~-------~p~~~~l~~~~~~~e~ 544 (1167)
..+.++..++....+.+|.+. ..+.+..+.+... .|+.+.|.+++...++. ..+.+.+.-....+.+
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s-----~~v~L~~aQl~is-~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~ 428 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKS-----KVVLLLRAQLKIS-QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYY 428 (652)
T ss_pred HHHhhhHHHHHHHhccCCchh-----HHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHH
Confidence 356777788777777665321 2233444555444 99999999999954421 1222333322222333
Q ss_pred hCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 545 IQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 545 ~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
..++ .+.+..++..++..-.... . ....-..+|.....|+..+|+.+...++++.+.+.+++.
T Consensus 429 ~~~~---~~~a~~vl~~Ai~~~~~~~-t-~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 429 KIKD---NDSASAVLDSAIKWWRKQQ-T-GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred hccC---CccHHHHHHHHHHHHHHhc-c-cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 3322 2234555555544321111 0 113445688888999999999999999999999977653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-08 Score=118.47 Aligned_cols=198 Identities=14% Similarity=0.069 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH----HHHHHHHH
Q 001064 321 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP----EYWIRYVL 396 (1167)
Q Consensus 321 ~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~----~~w~~ya~ 396 (1167)
++...+++++++..|+++++ ++|.+...+..++..+...|++++++.+|++++...+..+ ..|..++.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~--------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALE--------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHh--------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 44555666666666777766 5555566677777777778888888888888887765333 35667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhccChHHHH----HHHHHHHHcCCHHHHHHH---HHHHhhhcCCC--hHHHHHHHHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFVKRLPEIHL----FAARFKEQNGDIDGARAA---YQLVHTETSPG--LLEAIIKHANM 467 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~----~~a~~~e~~g~~~~A~~~---~~~a~~~~~P~--~~~~~~~~a~~ 467 (1167)
++...|++++|+.+|++++...+........ .........|....+... .... ....+. .......++..
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYA-AWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH-HhhcCcccchHHHHHHHHH
Confidence 8888888888888888886543211111111 111112223322222221 1111 111121 12223456666
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 468 ERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 468 e~r~g~~e~A~~~~~kAl~~~~~---~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
....|+.++|..+++........ .........+.+-.+..++. .|+.++|+..+..++..
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~-~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA-EGNYATALELLGPVRDD 336 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 67889999999999888775532 11001112233444555555 99999999999999854
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN03213 repressor of silencing 3; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-11 Score=131.89 Aligned_cols=77 Identities=14% Similarity=0.261 Sum_probs=69.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCH--HHHHHHHHh-CCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI--SGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~--~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
..+.+||||||++.+++++|+.+|+.||.|++|.|. +.+| ||||||+|.+. .++.+||.. ||..+.||.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp---RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV---RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 356899999999999999999999999999998863 5566 89999999987 689999987 899999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
+.+++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 98874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-08 Score=105.00 Aligned_cols=250 Identities=11% Similarity=0.053 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
+.+|+..++.+.||++-...+++|-+ ......-+...++.=+...|-++||..+|.......-.-+.+...+..++
T Consensus 76 GnLfRsRGEvDRAIRiHQ~L~~spdl----T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IY 151 (389)
T COG2956 76 GNLFRSRGEVDRAIRIHQTLLESPDL----TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIY 151 (389)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 34567777888888888888876532 22333445666676667889999999999998876445566888889999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhcc-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001064 399 EASGSMDLAHNALARATHVFVKR-L---PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~-~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
....++++|+++-++..++-... . ...+..+|.-+....+.+.|+.++.++ ++.+|++..+=+..++++...|++
T Consensus 152 Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA-lqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 152 QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA-LQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HhhCccceehhhhhhHHHHhccch
Confidence 99999999999999888765321 1 233444566666678999999999999 678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001064 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 554 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ 554 (1167)
..|.+.++++++.++. ..+++...+...+. ..|+.++.+..+.++.+.++.......-+-..|...| ++.
T Consensus 231 ~~AV~~~e~v~eQn~~-----yl~evl~~L~~~Y~-~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G----~~~ 300 (389)
T COG2956 231 QKAVEALERVLEQNPE-----YLSEVLEMLYECYA-QLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEG----IDA 300 (389)
T ss_pred HHHHHHHHHHHHhChH-----HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhC----hHH
Confidence 9999999999999863 34666666666644 5999999999999999999877655544444444333 455
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001064 555 LEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 593 (1167)
Q Consensus 555 ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 593 (1167)
++...-+-|...|.. ..+-+++++...-+
T Consensus 301 Aq~~l~~Ql~r~Pt~----------~gf~rl~~~~l~da 329 (389)
T COG2956 301 AQAYLTRQLRRKPTM----------RGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHhhCCcH----------HHHHHHHHhhhccc
Confidence 676666666665532 36777777765544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-10 Score=125.81 Aligned_cols=258 Identities=13% Similarity=0.096 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001064 321 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 321 ~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~ 400 (1167)
.+.+.+.+.+|...||.+|+ .||...+.|..++...-.+++-..++..++||+..+|.+-++.+.+|..+..
T Consensus 294 ~lm~nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHhcCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 45677789999999999999 8999999999999887777777889999999999999999999999999988
Q ss_pred cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC---------CHHHHHHHHHHHhhhcCC--ChHHHHHHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG---------DIDGARAAYQLVHTETSP--GLLEAIIKHANMER 469 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g---------~~~~A~~~~~~a~~~~~P--~~~~~~~~~a~~e~ 469 (1167)
.|.-..|..+|.+=|...+ +..|+..+.-....+ .+....++|-.+ ....| .++++...++.++.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p---~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLea-a~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKP---KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEA-ARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhhHHHHHHHHHHHHHhCc---cchhccccCccccccCCcCCCCHHHHHHHHHHHHHH-HHhCCCCCChhHHhhhHHHHh
Confidence 8888889999988877653 233433322111111 123334455554 34466 68889999999998
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 470 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 470 r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
-.|+|++|+.+|+.||...|++ ..+|..||-.+.- ..+..+|...|.+||++.|.-...+.+++.=-+.+|.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~- 513 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA- 513 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-
Confidence 8999999999999999998754 5699999999765 6789999999999999999876666544433333332
Q ss_pred hHHHHHHHHHHHHhhc--CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001064 550 KQIDFLEQLVDKFLMS--NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 601 (1167)
Q Consensus 550 ~~~~~ar~l~eral~~--~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v 601 (1167)
++.+-..|-.||.. .+.++-. .+.....||....-++...+..+.+..+
T Consensus 514 --ykEA~~hlL~AL~mq~ks~~~~~-~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 514 --YKEAVKHLLEALSMQRKSRNHNK-APMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred --HHHHHHHHHHHHHhhhccccccc-CCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 44444444444432 2222210 0111467999999999888877754443
|
|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=138.46 Aligned_cols=82 Identities=18% Similarity=0.369 Sum_probs=75.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+||+.++++++|+++|+.||.|++|+| ++++.+|++||||||+|++.+++.+||+. |++.|+|+.|+|.++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl-~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEE-EecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3479999999999999999999999999999986 67778899999999999999999999987 899999999999988
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
.+.+
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 7644
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=116.87 Aligned_cols=78 Identities=29% Similarity=0.414 Sum_probs=70.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++||||||+..+|+++|++.|++||.|.+|+|+- .+||+||.|++.|+|..||.. |+.+|+|+.+++.+.
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-------~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-------DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-------ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 679999999999999999999999999999988632 468999999999999999976 999999999999998
Q ss_pred cCCCCC
Q 001064 1109 RPNTGS 1114 (1167)
Q Consensus 1109 r~~~~~ 1114 (1167)
+.....
T Consensus 236 Ke~~~~ 241 (321)
T KOG0148|consen 236 KEGDDG 241 (321)
T ss_pred ccCCCC
Confidence 875543
|
|
| >KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-12 Score=122.09 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=73.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
-.++.-|||||||++.|+.||-.+|++||+|.+|. ++||+.||+++||||+.|+|..+.--|+.. ||+.|.||.|+|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin-LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN-LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEE-EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 44678999999999999999999999999999986 589999999999999999999998888876 8999999999997
Q ss_pred ec
Q 001064 1107 ER 1108 (1167)
Q Consensus 1107 ~~ 1108 (1167)
-.
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 43
|
|
| >PLN03121 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=120.22 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
.+++|||+||++.+|+++|+++|+.||.|.+|+| +++. ..+|||||+|++.++++.||.++|..|.|+.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I-~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEI-IRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEE-ecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4799999999999999999999999999999885 4443 45689999999999999999999999999999998654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-09 Score=115.61 Aligned_cols=177 Identities=14% Similarity=0.049 Sum_probs=139.7
Q ss_pred CCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH
Q 001064 348 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 424 (1167)
Q Consensus 348 pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~ 424 (1167)
|.+....+.+...+..+...|+++.|+..|++++...|.++ ++|+..+.++...|++++|+..|+++++.+ |+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCc
Confidence 35566678899999888899999999999999999988775 688999999999999999999999999988 66555
Q ss_pred ---HHHHHHHHHHHc--------CCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCCHHH
Q 001064 425 ---IHLFAARFKEQN--------GDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGNLED 476 (1167)
Q Consensus 425 ---l~~~~a~~~e~~--------g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~~e~ 476 (1167)
.++..+.++... |++++|+..|+++ ++.+|++...+ +..+.++.+.|++++
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL-IRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH-HHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 577777777654 7899999999998 67799886553 234556667788888
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
|+..|++++...|+. +..+.++..++..+.. .|++++|..+++.....+|
T Consensus 185 A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~-lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 185 AINRFETVVENYPDT---PATEEALARLVEAYLK-LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHCCCC---cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 888888888776542 3345667777777665 7888888887777766655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF14259 RRM_6: RNA recognition motif (a | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=100.33 Aligned_cols=69 Identities=26% Similarity=0.521 Sum_probs=60.4
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1034 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
|||+|||+++++++|+++|+.||.|..+.+ ..++. |.++|+|||+|.+.++|.+|+.. ++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~-~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRL-IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEE-EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEE-Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999765 44555 88999999999999999999998 67999999875
|
k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A .... |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-08 Score=113.12 Aligned_cols=314 Identities=14% Similarity=0.047 Sum_probs=205.4
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD 168 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~ 168 (1167)
.||+..-+|..++.++... ++...+.+.|.+++...|.+ .+.+...+..+...|++++|.++++++|..+|.+..
T Consensus 1 ~dp~~~~a~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~ 78 (355)
T cd05804 1 ADPDFALGHAAAALLLLLG--GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL 78 (355)
T ss_pred CCCccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 3799999999999888764 56777788899988888755 456777777888999999999999999999999988
Q ss_pred HHHH-HHHHHHh-hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHH
Q 001064 169 IWLH-YCIFAIN-TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 246 (1167)
Q Consensus 169 lw~~-ya~~~~~-~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~ 246 (1167)
.|.. +..+... ..+..+.+.+.++. ..+.++.....+..++..+..+|++++|...|+++++..+.+...+.
T Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~--- 152 (355)
T cd05804 79 ALKLHLGAFGLGDFSGMRDHVARVLPL---WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVH--- 152 (355)
T ss_pred HHHHhHHHHHhcccccCchhHHHHHhc---cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHH---
Confidence 8773 1122110 12444455555544 23455555555556667778899999999999999998666432222
Q ss_pred HHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH
Q 001064 247 KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK 326 (1167)
Q Consensus 247 ~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~ 326 (1167)
....+|...+
T Consensus 153 ----------------------------------------------------------------------~la~i~~~~g 162 (355)
T cd05804 153 ----------------------------------------------------------------------AVAHVLEMQG 162 (355)
T ss_pred ----------------------------------------------------------------------HHHHHHHHcC
Confidence 1123456677
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CHHHHH-HH---HHHHHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-YPEYWI-RY---VLCMEA 400 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~-~~~~w~-~y---a~~l~~ 400 (1167)
++++++..|++++.. .|.++. ....|..++.++...|++++|+.+|++++...+. ..-.+. .. ...+..
T Consensus 163 ~~~eA~~~l~~~l~~-----~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 163 RFKEGIAFMESWRDT-----WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred CHHHHHHHHHhhhhc-----cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 888888888888861 111111 2346778888999999999999999999765442 111222 21 111222
Q ss_pred cCCHHHHHHH---HHHHHHhhh-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC---C-----hHHHHHHHHHHH
Q 001064 401 SGSMDLAHNA---LARATHVFV-KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP---G-----LLEAIIKHANME 468 (1167)
Q Consensus 401 ~g~~e~A~~v---l~rA~~~~~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P---~-----~~~~~~~~a~~e 468 (1167)
.|....+... ........+ +-........+..+...|+.+.|..+++.+...... . ...+.+..+..+
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 3433222222 111111110 011222234667777889999999999876221111 1 234556777778
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 001064 469 RRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+.|++++|+.++..++...
T Consensus 318 ~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 318 FAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 89999999999999998765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=106.45 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=77.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..|..|||.++...+++++|.+.|..||+|+.+++.+ ++.||-.|||+.|+|++...|++||.. ||..|.|..|.|++
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNL-DRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNL-DRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeecc-ccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3689999999999999999999999999999988765 677999999999999999999999988 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
+-.+.+
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-08 Score=106.10 Aligned_cols=191 Identities=16% Similarity=0.155 Sum_probs=164.2
Q ss_pred CChHHHHHHHHHHHHhcCC---CHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH
Q 001064 368 GDFNKVVKLYERCLIACAN---YPEYWIRYVL---CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 368 g~~~~a~~~yeral~~~p~---~~~~w~~ya~---~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
.+.++++.++...+...+. -.+.|.-|=+ .....|+.+.|..++++....+ |++..+-.+.|.+++..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3566677777766655432 2456655543 3345789999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 442 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 521 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i 521 (1167)
|.++|+++ ++-+|.+..++.+..-+...+|+--+|++.+...++.++++ +++|..+++++.. .|++++|.=+
T Consensus 105 A~e~y~~l-L~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~-~~~f~kA~fC 176 (289)
T KOG3060|consen 105 AIEYYESL-LEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELAEIYLS-EGDFEKAAFC 176 (289)
T ss_pred HHHHHHHH-hccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHh-HhHHHHHHHH
Confidence 99999998 67799999999999999999999999999999999999643 7899999999665 9999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 522 LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 522 ~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
|+..+=+.|.++.++..|+.+.+.++...++..+|+.|++++...+
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999998887888999999999999765
|
|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=138.39 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=72.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||||||+++++++|+++|++||.|++|+| +.++.+|+++|||||+|.+.+++.+||+. ||..|+||.|+|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I-~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINM-SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEE-eecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4589999999999999999999999999999886 56888999999999999999999999976 899999999999854
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=113.59 Aligned_cols=122 Identities=14% Similarity=0.070 Sum_probs=113.2
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhCC--HHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE-ARVGS--MDKVV 153 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e-~~~~~--~e~A~ 153 (1167)
++.++.+..|+++++.+|+|.++|..|++.+..+ +++++|..+|+++++..|++..+|..++.+. ...|+ .++|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~--g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR--NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5678889999999999999999999999999874 8999999999999999999999999999964 67777 59999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
++|+++|+.+|.+++.|..++..+. ..|++++|+..|+++++..+.+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~-~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAF-MQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999999998 6899999999999999988776
|
|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-11 Score=120.39 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=79.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+|++|||-.||.+..+.+|-++|-.||.|.+.+|++ |+.|+.+||||||.|++..+++.||.+ ||+.|+-++|+|.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv-DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV-DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee-hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 34789999999999999999999999999999999866 888999999999999999999999988 8999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
.+|++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9998754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.6e-07 Score=102.30 Aligned_cols=446 Identities=12% Similarity=0.064 Sum_probs=248.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
+++++++....+++...|+|.++..--.-.+-+ .+.+++|.++.+.-....-.+ .+.+.-+.++.+.+..++|...+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq--~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ--LDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh--hhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 789999999999999999999998743333333 257777764444333222222 22266777888999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 236 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~ 236 (1167)
+ .+ .+.+..+...+++.+. .++++++|..+|+..++..-.+... .+...++. ...-..+. +.+..-+.+.
T Consensus 103 ~-~~--~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~-~~r~nl~a----~~a~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 103 K-GL--DRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDE-ERRANLLA----VAAALQVQ-LLQSVPEVPE 172 (652)
T ss_pred h-cc--cccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHH-HHHHHHHH----HHHhhhHH-HHHhccCCCc
Confidence 8 33 3566778889999998 7899999999999999843222111 11111111 01111111 2333334466
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHH
Q 001064 237 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 316 (1167)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~ 316 (1167)
..++.+|+..+.++....+.+.+..-+.+ .+-..+.+.+-.. ..++.+ +++.-+..
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA--~~~~~e~l~~~d~---------~eEeie-------------~el~~Irv 228 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKA--LRICREKLEDEDT---------NEEEIE-------------EELNPIRV 228 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHH--HHHHHHhhccccc---------chhhHH-------------HHHHHHHH
Confidence 68899999988887655443321110000 0000011110000 000000 11111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHH-HHHHHHHHHcCChH-HHHHHHH--------HHHHhc--
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENW-HNYLDFIERDGDFN-KVVKLYE--------RCLIAC-- 384 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W-~~y~~~~e~~g~~~-~a~~~ye--------ral~~~-- 384 (1167)
.+..++...++-.++...|...|++ .|.|.....+- .+++.+-....=++ .++..++ .++...
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~-----~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~ 303 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKR-----NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK 303 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHh-----cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344677888999999999999985 33443222222 22222211111111 1111221 111111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-HHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-LEAIIK 463 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-~~~~~~ 463 (1167)
.+-..|..+.+.+....+..+.+++...+.-...|.....+.+..+....+. ...+|..++... .+-.|.+ ..+.+.
T Consensus 304 ~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~-~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 304 KQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREK-KHKKAIELLLQF-ADGHPEKSKVVLLL 381 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHH-HHhhhHHHHHHH-hccCCchhHHHHHH
Confidence 1112244455554445566666665544333222111122333333322222 677788888876 5667776 567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc----CCC---HHH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV----QLS---KPL 535 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~----p~~---~~l 535 (1167)
.+.+...+|+++.|+.++...+..-...- .....|. .+.++.+++...++.+.|-.++..|+... +.+ ..+
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~-~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG-TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 88999999999999999995442211000 0112233 34555555555777888888888888743 222 366
Q ss_pred HHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 536 LEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 536 ~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
|...+.|++..|+ .+.+.++++..+..++...
T Consensus 461 ~~~aa~f~lr~G~---~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 461 MREAAEFKLRHGN---EEEASSLLEELVKFNPNDT 492 (652)
T ss_pred HHHHhHHHHhcCc---hHHHHHHHHHHHHhCCchH
Confidence 7788999999876 5557788888888766544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.2e-08 Score=114.22 Aligned_cols=99 Identities=9% Similarity=-0.020 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 177 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~ 177 (1167)
+.....+.++.. .|++++|.+.++..-..-.+...+.-..|+++++.|++++|..+|...|..+|++.+....|....
T Consensus 5 E~lLY~~~il~e--~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 5 ELLLYKNSILEE--AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 334445555554 378888888888888888888888888888888888888888888888888888877777776665
Q ss_pred Hhh----cCCHHHHHHHHHHHHHhc
Q 001064 178 INT----YGDPETIRRLFERGLAYV 198 (1167)
Q Consensus 178 ~~~----~~~~~~Ar~~feral~~~ 198 (1167)
.-. ..+.+....+|+......
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y 107 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY 107 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC
Confidence 211 123455666666655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-10 Score=112.57 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=79.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
.+...+.|.|..||.++|+++||.+|+..|+|++|++ +||+-+|++-|||||.|-++.+|++||.. ||..+..+.|+|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKL-vRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKL-VRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeee-eeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 3445688999999999999999999999999999984 99999999999999999999999999987 899999999999
Q ss_pred EeccCCC
Q 001064 1106 EERRPNT 1112 (1167)
Q Consensus 1106 ~~~r~~~ 1112 (1167)
.++||..
T Consensus 116 SyARPSs 122 (360)
T KOG0145|consen 116 SYARPSS 122 (360)
T ss_pred EeccCCh
Confidence 9999865
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-08 Score=115.95 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=180.8
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 419 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~--------~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~- 419 (1167)
.+|.....-+.++..+...|+++.|..++++|+.. ++........+|.++...+++++|..+|++|+.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666677777888889999999999999999998 555566777799999999999999999999999874
Q ss_pred ---cc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 420 ---KR---LPEIHLFAARFKEQNGDIDGARAAYQLVH-------TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 486 (1167)
Q Consensus 420 ---p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~-------~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~ 486 (1167)
++ ...++..++.++...|++++|...+++++ ....|.....+...+.++..++++++|..+|.++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 23 34567778888999999999998888762 122344445577777888889999999999999999
Q ss_pred hhhC--CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc----C-----CCHHHHHHHHHhHhhCCChhHHHHH
Q 001064 487 IEKG--KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV----Q-----LSKPLLEALIHFESIQSSPKQIDFL 555 (1167)
Q Consensus 487 ~~~~--~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~----p-----~~~~l~~~~~~~e~~~~~~~~~~~a 555 (1167)
+... .++....+.++.+++.+++. .|++++|+++|++|++.. . ....+|.--...+ .. +.+..+
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~-~~---k~~~~a 428 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE-EL---KKYEEA 428 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH-Hh---cccchH
Confidence 7652 11223456788999999887 999999999999999954 1 1234453222221 11 123445
Q ss_pred HHHHHHHhhc----CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 556 EQLVDKFLMS----NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 556 r~l~eral~~----~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
-.+|++++.. .++.+. -...........+..|+.+.+.++..+....
T Consensus 429 ~~l~~~~~~i~~~~g~~~~~------~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHPD------VTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 6666666432 233332 2345666666777889888888888777644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-08 Score=116.91 Aligned_cols=258 Identities=14% Similarity=0.154 Sum_probs=163.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh---
Q 001064 129 FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG--------VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY--- 197 (1167)
Q Consensus 129 ~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~--------~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~--- 197 (1167)
+|.-...-..++..+..+|++++|+.+|++||.. +|.=......++.++. ..+++++|..+|++||..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Confidence 4666677778999999999999999999999998 4443444445777777 789999999999999975
Q ss_pred -cC-CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCC
Q 001064 198 -VG-TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 275 (1167)
Q Consensus 198 -~g-~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~ 275 (1167)
.| +|+....+...++..+...|++++|...+++++++-...+.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~----------------------------------- 318 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG----------------------------------- 318 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc-----------------------------------
Confidence 23 45445566666666777889999999999999866332000
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHH
Q 001064 276 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE 355 (1167)
Q Consensus 276 ~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~ 355 (1167)
....++...+.-...++...++++++...|.++++
T Consensus 319 ------------------------------~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~--------------- 353 (508)
T KOG1840|consen 319 ------------------------------ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK--------------- 353 (508)
T ss_pred ------------------------------cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH---------------
Confidence 00111122333334456666676666666655544
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----c----ChHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK----R----LPEIH 426 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p----~----~~~l~ 426 (1167)
.|.+++.. ++.-..+..+++..+...|++++|.++|++|+.+... . ..-+|
T Consensus 354 --------------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 354 --------------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred --------------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 22222222 1123345555555555555566665555555554410 0 11122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH------hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 427 LFAARFKEQNGDIDGARAAYQLV------HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a------~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+ |....+.+++.+|..+|.++ +..-.|+....+..++-++.++|++++|+++.++++...
T Consensus 414 ~l-a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 414 QL-AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HH-HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 22 23335556666555555543 122245666778999999999999999999999888644
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-09 Score=110.35 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=114.6
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH-HHcCC--HHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGD--IDGAR 443 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~-e~~g~--~~~A~ 443 (1167)
.++.++++..+++++..+|.+.+.|+.++.++...|++++|...|++++.+. |+++.++..+|.++ ...|+ .++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4567889999999999999999999999999999999999999999999988 89999999999965 67777 59999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 444 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 444 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
.+|+++ ++++|++..+++.++..+.++|++++|+.+|+++++..+.+
T Consensus 131 ~~l~~a-l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKA-LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHH-HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999998 88999999999999999999999999999999999999754
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.6e-09 Score=104.00 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001064 81 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAV 160 (1167)
Q Consensus 81 ~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL 160 (1167)
--+..|+++++.+|.+ |+.++..+.. .|++++|...|++++...|.+..+|..++.++.+.|++++|+..|++++
T Consensus 11 ~~~~~~~~al~~~p~~---~~~~g~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 11 IPEDILKQLLSVDPET---VYASGYASWQ--EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred CHHHHHHHHHHcCHHH---HHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3467889999999996 6667777776 4899999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 161 QGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 161 ~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
...|.+.+.|+..+..+. ..|++++|+..|++++...|.+
T Consensus 86 ~l~p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLK-MMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred hcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999888 7899999999999999977765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.4e-09 Score=104.13 Aligned_cols=121 Identities=14% Similarity=-0.020 Sum_probs=97.5
Q ss_pred HHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 335 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 335 ~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
|+++|. ++|.. |..++..+...|++++|+..|++++...|.+.++|+.++.++...|++++|...|+++
T Consensus 16 ~~~al~--------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 16 LKQLLS--------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHH--------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 667776 66653 5556666677888888888888888888888888888888888888888888888888
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
+.+. |+++..|+.++..+...|++++|+..|+++ +++.|++...|...+...
T Consensus 85 l~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A-l~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 85 LMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTA-IKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHH
Confidence 8876 788888888888888888888888888887 678888888876666553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-07 Score=110.56 Aligned_cols=304 Identities=15% Similarity=0.165 Sum_probs=202.3
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV--- 146 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~--- 146 (1167)
-+++.+.|++++|++.|.+.-+.-.+........++++.++ |+.++|..+|..+|.++|+|..|+..|.....-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kL--g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKL--GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 35677789999999999998887787777777899999987 7999999999999999999999999998887322
Q ss_pred --CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC-CHH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHH
Q 001064 147 --GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG-DPE-TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWS 222 (1167)
Q Consensus 147 --~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~-~~~-~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~ 222 (1167)
.+.+....+|+..-..+|.+.-.-..-+.|.. | .+. .+...+...|.. |. +.++...
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~---g~~F~~~~~~yl~~~l~K-gv----PslF~~l----------- 149 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE---GDEFKERLDEYLRPQLRK-GV----PSLFSNL----------- 149 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCC---HHHHHHHHHHHHHHHHhc-CC----chHHHHH-----------
Confidence 35777888888888888776433222222211 1 111 111122222211 11 0111111
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccc
Q 001064 223 RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVS 302 (1167)
Q Consensus 223 ~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~ 302 (1167)
+.+|. .+.....+-..+..
T Consensus 150 --k~Ly~-----d~~K~~~i~~l~~~------------------------------------------------------ 168 (517)
T PF12569_consen 150 --KPLYK-----DPEKAAIIESLVEE------------------------------------------------------ 168 (517)
T ss_pred --HHHHc-----ChhHHHHHHHHHHH------------------------------------------------------
Confidence 11110 00000000000000
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcccC---CCChhhHHHHHHH--HHHHHHcCChHHHHHH
Q 001064 303 AGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIR-RPYFHVK---PLSVTELENWHNY--LDFIERDGDFNKVVKL 376 (1167)
Q Consensus 303 ~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~-r~~~~v~---pld~~~~~~W~~y--~~~~e~~g~~~~a~~~ 376 (1167)
|...+. ...|... ..+++..-+|..| +.++...|++++|+..
T Consensus 169 --------------------------------~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~ 216 (517)
T PF12569_consen 169 --------------------------------YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY 216 (517)
T ss_pred --------------------------------HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 000000 0001000 1233444567665 6788899999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC--
Q 001064 377 YERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS-- 454 (1167)
Q Consensus 377 yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~-- 454 (1167)
.++||...|..+++++..|.++...|++.+|...++.|..+. ..+--|....+.++.+.|++++|.+++..- .+-+
T Consensus 217 Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F-tr~~~~ 294 (517)
T PF12569_consen 217 IDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLF-TREDVD 294 (517)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCCC
Confidence 999999999999999999999999999999999999999876 566667778899999999999999988864 3322
Q ss_pred CC-h-H---HHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 455 PG-L-L---EAI--IKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 455 P~-~-~---~~~--~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
|. + . .+| ...+..+.|.|++..|..-|...++++.
T Consensus 295 ~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 295 PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11 1 1 145 3445667889999999999998888774
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-07 Score=118.29 Aligned_cols=185 Identities=12% Similarity=0.103 Sum_probs=124.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCH
Q 001064 126 LAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSF 205 (1167)
Q Consensus 126 l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~ 205 (1167)
....|.+..+|..++..+...+++++|..+++.++..+|.+..+|+..+-++. ..++.+++-.+ +++...+.+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~---- 96 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQN---- 96 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccc----
Confidence 45568999999999999999999999999999999999999999999888666 55665555444 444433322
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhcc
Q 001064 206 PLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKAN 285 (1167)
Q Consensus 206 ~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~ 285 (1167)
.++..+.-+|.+++..
T Consensus 97 -------------~~~~~ve~~~~~i~~~--------------------------------------------------- 112 (906)
T PRK14720 97 -------------LKWAIVEHICDKILLY--------------------------------------------------- 112 (906)
T ss_pred -------------cchhHHHHHHHHHHhh---------------------------------------------------
Confidence 1222121111111111
Q ss_pred ccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHH
Q 001064 286 EEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE 365 (1167)
Q Consensus 286 e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e 365 (1167)
+.+-.+.+.++.+|.
T Consensus 113 -----------------------------------------------------------------~~~k~Al~~LA~~Yd 127 (906)
T PRK14720 113 -----------------------------------------------------------------GENKLALRTLAEAYA 127 (906)
T ss_pred -----------------------------------------------------------------hhhhHHHHHHHHHHH
Confidence 111224556667777
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
+.|+.+++..+|+++|..+|+++.+..+||.++... ++++|+..+.+|+..+ ...+++.+++.+
T Consensus 128 k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~---------------i~~kq~~~~~e~ 191 (906)
T PRK14720 128 KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF---------------IKKKQYVGIEEI 191 (906)
T ss_pred HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---------------HhhhcchHHHHH
Confidence 888888888888888888888888888888877777 8888888888887753 123355556666
Q ss_pred HHHHhhhcCCChHHHHHH
Q 001064 446 YQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~ 463 (1167)
.++. .+.+|++.+.++.
T Consensus 192 W~k~-~~~~~~d~d~f~~ 208 (906)
T PRK14720 192 WSKL-VHYNSDDFDFFLR 208 (906)
T ss_pred HHHH-HhcCcccchHHHH
Confidence 6665 4556655554433
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=116.38 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=70.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHh-cCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..+++||.|||+++.+.+|+++|. +.|+|..|.++. ..+|++||||.|||++++.+++|++. |.+.++||.|+|.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~--D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF--DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec--ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 347799999999999999999996 789999987543 44699999999999999999999988 89999999999988
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
.+.
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 764
|
|
| >KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-10 Score=113.03 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=75.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++||||+|..++++.-|...|-+||.|++|.+.+ |-.++++||||||+|+..++|.+||.. |+.++.||.|+|.++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPl-DyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPL-DYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhccccc-chhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 459999999999999999999999999999988755 677899999999999999999999987 899999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8654
|
|
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=110.07 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=76.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+..|||-||.+++++.-|.++|++||.|..|+| +||-.|.++||||||++.+.++|..||.. ||..+++|.|.|.++
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKv-irD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKV-IRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEE-EecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 5799999999999999999999999999999986 78888899999999999999999999977 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-08 Score=122.54 Aligned_cols=137 Identities=10% Similarity=0.037 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a 430 (1167)
+...+..+.++......|.+++|..++++|+..+|++..+++.++..|.+.+++++|+..+++++... |+++..++.+|
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.++.+.|++++|..+|+++ +..+|++..+|+.++..+...|+.++|...|++|++...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~-~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 162 KSWDEIGQSEQADACFERL-SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhcchHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999998 557999999999999999999999999999999999874
|
|
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.2e-10 Score=113.60 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=76.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
-..+||+.|...++-++||+.|.+||+|-+++| |||..|+++||||||.|...++|+.||.. ||.-|++|.|+-.++.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akv-irD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKV-IRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceE-eecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 478999999999999999999999999999997 89999999999999999999999999987 8999999999999987
Q ss_pred CCCC
Q 001064 1110 PNTG 1113 (1167)
Q Consensus 1110 ~~~~ 1113 (1167)
.++.
T Consensus 141 RKp~ 144 (321)
T KOG0148|consen 141 RKPS 144 (321)
T ss_pred cCcc
Confidence 6653
|
|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.2e-09 Score=128.40 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=72.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+.+|||+||+.++|+++|+++|++||.|++|+|.. + .+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~-d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML-D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE-C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 568899999999999999999999999999988643 4 6789999999999999999999976 899999999999987
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 754
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.8e-08 Score=120.03 Aligned_cols=207 Identities=10% Similarity=0.019 Sum_probs=160.8
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh-----
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----- 423 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~----- 423 (1167)
.++.+.+.|..++..+...+++++++.+.+.++..+|....+|+..+.++.+.++.+.+.-+ +++.++ +...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHH
Confidence 57888999999999999999999999999999999999999999999988888888777666 677666 3333
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 424 --------------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 424 --------------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.+++.+|.++.+.|+.++|..+|+++ ++++|+++.+...+|.++... ++++|+.++.+|+...-
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~-L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL-VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999998 899999999999999998888 99999999999988642
Q ss_pred CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhC-----------------CChhHH
Q 001064 490 GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ-----------------SSPKQI 552 (1167)
Q Consensus 490 ~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~-----------------~~~~~~ 552 (1167)
. .+.+..++.+|++.++.+|++..++..+...-... ...++.
T Consensus 181 --------------------~-~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 181 --------------------K-KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred --------------------h-hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 1 34577777777777777777766544332222111 112234
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH
Q 001064 553 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL 586 (1167)
Q Consensus 553 ~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l 586 (1167)
+....++.++|...+.|. .-+.+|..-|.
T Consensus 240 ~~~i~iLK~iL~~~~~n~-----~a~~~l~~~y~ 268 (906)
T PRK14720 240 DEVIYILKKILEHDNKNN-----KAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHhcCCcch-----hhHHHHHHHHH
Confidence 556677788888777665 23455555554
|
|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=133.17 Aligned_cols=76 Identities=24% Similarity=0.416 Sum_probs=70.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+|||||||.++|+++|+++|++||.|.+|+| +++..+++++|||||+|.+.++|++||+. ++..|+|+.|+|.+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v-~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRV-CRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 7999999999999999999999999999876 67888899999999999999999999987 7888999999998764
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=129.86 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=74.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||..+++++|+++|++||.|..|.+ +.++.+|+++|||||+|.+.++|.+||..+|..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i-~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQC-IKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 446789999999999999999999999999999986 5678889999999999999999999999999999999999976
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
..
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 43
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-08 Score=108.97 Aligned_cols=276 Identities=12% Similarity=0.055 Sum_probs=184.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
+.++..|.+.|..++..+|++..+|..-+..++..++++.+.--.++.+++.|....-...-.+... ..++..+|...|
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~-a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL-ALSDLIEAEEKL 140 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh-hhHHHHHHHHHh
Confidence 3678899999999999999999999999999999999999999999998887654432222222222 122222332222
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHh
Q 001064 192 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 271 (1167)
Q Consensus 192 eral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~ 271 (1167)
+ + ... .....+...+++++......
T Consensus 141 ~--------~---~~~-----------~~~anal~~~~~~~~s~s~~--------------------------------- 165 (486)
T KOG0550|consen 141 K--------S---KQA-----------YKAANALPTLEKLAPSHSRE--------------------------------- 165 (486)
T ss_pred h--------h---hhh-----------hHHhhhhhhhhcccccccCC---------------------------------
Confidence 2 0 000 00111111122211110000
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh
Q 001064 272 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 351 (1167)
Q Consensus 272 ~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~ 351 (1167)
....++..+...++...+++.+++..--..++ +|+
T Consensus 166 -------------------------------------pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk--------ld~ 200 (486)
T KOG0550|consen 166 -------------------------------------PACFKAKLLKAECLAFLGDYDEAQSEAIDILK--------LDA 200 (486)
T ss_pred -------------------------------------chhhHHHHhhhhhhhhcccchhHHHHHHHHHh--------ccc
Confidence 00000111112233344455555444444444 666
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 352 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------------YWIRYVLCMEASGSMDLAHNALARATHVFV 419 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~------------~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~ 419 (1167)
.+.+...--..++--+.+.+.++..|+++|...|.+.+ .|..-+.-..+.|.+..|.++|..||.+.|
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 65544333333444456777888888888888776653 677777777788999999999999999884
Q ss_pred cc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 420 KR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 420 p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.+ +..+|...+....+.|+..+|+.-.+.+ +.+++..+..++..++...-++++++|...|++|++...
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 32 4567788889999999999999999998 899999999999999999999999999999999999875
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-07 Score=97.94 Aligned_cols=174 Identities=16% Similarity=0.040 Sum_probs=148.7
Q ss_pred HHHHHH---HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 001064 355 ENWHNY---LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 431 (1167)
Q Consensus 355 ~~W~~y---~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~ 431 (1167)
+.|.-| .......++.+-|..++.+.....|....+-..+|.+++..|.+++|.++|++.++-. |.+..++-....
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlA 128 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLA 128 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHH
Confidence 345554 3333567888999999999999999999999999999999999999999999999866 777788887777
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
++..+|+--+|++.+..- ++..+++.++|...++++...|++++|.-+|++.+-+.| ..|..+..|++++|..
T Consensus 129 ilka~GK~l~aIk~ln~Y-L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P------~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEY-LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP------FNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHcCCcHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHH
Confidence 777888888999888886 788999999999999999999999999999999998875 4577889999999984
Q ss_pred hC--CHHHHHHHHHHHHhhcCCCHHHH
Q 001064 512 SR--NAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 512 ~g--~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
.| ++.-||++|.++|+++|.+..-|
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 33 78899999999999999654333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=109.38 Aligned_cols=166 Identities=10% Similarity=-0.070 Sum_probs=139.0
Q ss_pred CCCcccccccCCCCchHHHHHHHHHHhCCCCH---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHH
Q 001064 66 GAAAGQELVDGSAMSGEEDRLWNIVKANSSDF---SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG---YWKKY 139 (1167)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~---~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~---~W~~~ 139 (1167)
....+..+...++++.++..|+++++.+|.+. ++|+.++..+... +++++|+..|+++++.+|++.. .|...
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS--GDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 34444445455899999999999999999876 6889999998874 8999999999999999998876 68888
Q ss_pred HHHHHHh--------CCHHHHHHHHHHHHhccCCCHHHHHHH-----------------HHHHHhhcCCHHHHHHHHHHH
Q 001064 140 ADHEARV--------GSMDKVVEVYERAVQGVTYSVDIWLHY-----------------CIFAINTYGDPETIRRLFERG 194 (1167)
Q Consensus 140 a~~e~~~--------~~~e~A~~l~eraL~~~P~s~~lw~~y-----------------a~~~~~~~~~~~~Ar~~fera 194 (1167)
+..+.+. +++++|++.|++++..+|.+...|..+ +.+++ ..|++++|...|+++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYL-KRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHH
Confidence 8888765 789999999999999999987665333 34444 569999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 195 LAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 195 l~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
+...|.++.....|...+......|++++|..+++.+...
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9988877777789999999999999999999988877554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.8e-08 Score=100.99 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001064 373 VVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 452 (1167)
Q Consensus 373 a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~ 452 (1167)
+...+=+....+|.+.++ ..++..+...|+-+....++..+...+ ++...++..++....+.|++.+|...+.++ ..
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA-~~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKA-AR 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHH-hc
Confidence 444444555566999999 999988888899999888888876655 778888888999999999999999999998 89
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 453 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 453 ~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+.|++.++|...+-.+.+.|+++.|+.-|.+++++.+++ |.++.+++.+++. .|+++.|+.++.++...-+.+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLL-RGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999764 6688888888776 999999999999999988888
Q ss_pred HHHHHHHHHhHhhCCCh
Q 001064 533 KPLLEALIHFESIQSSP 549 (1167)
Q Consensus 533 ~~l~~~~~~~e~~~~~~ 549 (1167)
..+-.+++..-...++.
T Consensus 202 ~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 202 SRVRQNLALVVGLQGDF 218 (257)
T ss_pred hHHHHHHHHHHhhcCCh
Confidence 88888888887777773
|
|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-09 Score=118.41 Aligned_cols=84 Identities=32% Similarity=0.444 Sum_probs=74.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhC------C-Ceee
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS------P-IQLA 1099 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~------~-~~i~ 1099 (1167)
++..+++|||+|||+++|+++|.++|++||+|+.+. ++.++.||+++|+|||.|.+..++..||.+- | +.|.
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~-iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI-IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEE-EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 445689999999999999999999999999999986 4889999999999999999999999999762 3 7899
Q ss_pred CcEeEEEeccCC
Q 001064 1100 GRQVYIEERRPN 1111 (1167)
Q Consensus 1100 g~~l~V~~~r~~ 1111 (1167)
||.|+|..+-+|
T Consensus 367 GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 367 GRLLKVTLAVTR 378 (678)
T ss_pred ccEEeeeeccch
Confidence 999999766443
|
|
| >smart00362 RRM_2 RNA recognition motif | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=91.02 Aligned_cols=71 Identities=34% Similarity=0.573 Sum_probs=62.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+|||+|||..++.++|+++|++||.|..+.+ ..+. +.++|+|||+|.+.+++..|+.. ++..++|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~-~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKI-PKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999998764 3333 67889999999999999999987 6899999998873
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-08 Score=120.98 Aligned_cols=154 Identities=12% Similarity=-0.063 Sum_probs=141.8
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA 159 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era 159 (1167)
.+++.++...++..|.+.++...|+++.... +..++|..+++++++..|++..++..++..+.+.+.+++|...++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~--g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAA--HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567778888999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhH
Q 001064 160 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQL 239 (1167)
Q Consensus 160 L~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~ 239 (1167)
|...|++....+.++..+. ..|.+++|..+|++++. .++.....|..|+..++..|+.++|...|++++.......
T Consensus 147 l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred hhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 9999999999999999998 78999999999999998 4445688999999999999999999999999999744433
|
|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-09 Score=126.01 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=65.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V 1105 (1167)
.+++|||+|||.++++++|+++|++||.|.+++| +++ .+|+++|||||+|.+.++|++||+. ++..|. |+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl-~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRL-MMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEE-EEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 4699999999999999999999999999999875 456 7899999999999999999999987 777774 665544
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-09 Score=129.19 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=73.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||..+|+++|+++|+.||.|+.+.| +++..+|+++|||||+|.+.++|..||.. +|+.|+|+.|+|.++
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~-~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL-IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3589999999999999999999999999999875 66778899999999999999999999976 899999999999987
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-08 Score=96.95 Aligned_cols=115 Identities=14% Similarity=0.214 Sum_probs=107.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001064 84 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 163 (1167)
Q Consensus 84 ~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 163 (1167)
+.|+++++.+|.+.++.+.++..+... ++.++|...|++++..+|.+..+|..++.++.+.+++++|+.+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468899999999999999999988874 799999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 164 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 164 P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
|.+.+.|+.++.++. ..|++++|...|+++++..|.+
T Consensus 82 p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 PDDPRPYFHAAECLL-ALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccc
Confidence 999999999999888 7899999999999999976654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-09 Score=122.32 Aligned_cols=81 Identities=21% Similarity=0.324 Sum_probs=75.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
+.|||||+|+++++++|.++|+..|.|.++++ +.|+.||+.|||||++|.+.+++..|++. ||.+++||+|+|+++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~-v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRL-VYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeee-cccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999999999999999999999999885 78999999999999999999999999988 89999999999999876
Q ss_pred CCC
Q 001064 1111 NTG 1113 (1167)
Q Consensus 1111 ~~~ 1113 (1167)
+..
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 543
|
|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-09 Score=115.99 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=70.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
-++||||.|.+.+.++.||..|..||+|+++++ --|..|+++||||||+|+-++.++-|++. ||..++||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInM-SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINM-SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeec-ccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 389999999999999999999999999999875 33788999999999999999999999987 899999999999743
|
|
| >smart00360 RRM RNA recognition motif | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.9e-09 Score=89.38 Aligned_cols=70 Identities=36% Similarity=0.575 Sum_probs=62.0
Q ss_pred EecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1036 VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1036 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
|+|||..+++++|+++|++||.|..+.+ ..++.+++++|+|||+|.+.+++..|+.. ++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i-~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRL-VRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEE-EeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999875 34555688999999999999999999987 6899999998874
|
|
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.9e-09 Score=126.02 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=73.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||..+|+++|+++|++||.|..|.+ +++..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~-~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQL-HRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 489999999999999999999999999999875 56777889999999999999999999976 8999999999999976
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-08 Score=114.11 Aligned_cols=214 Identities=13% Similarity=0.062 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001064 316 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 395 (1167)
Q Consensus 316 ~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya 395 (1167)
..+.+++...+-..+|+..||+ +.+|-..+.+|...|+..+|.....+-+. .+.++-+|..++
T Consensus 402 ~~laell~slGitksAl~I~Er----------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER----------------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh----------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 3344556666666667777765 46799999999988988888877777777 577777888777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 475 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 475 (1167)
+++... .+|++|.++....+..+...++.....++++.++.+.+++. .+++|.....|+.++.+..+++++.
T Consensus 465 Dv~~d~-------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s-l~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDP-------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS-LEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccCh-------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH-hhcCccchhHHHhccHHHHHHhhhH
Confidence 766433 45666666654455666677777777789999999999998 7999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHH
Q 001064 476 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFL 555 (1167)
Q Consensus 476 ~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~a 555 (1167)
.+...|.+++...|++ .+.|.+++..+.+ .|+..+|+..+++|++.+..+..+|++|..+-...+.- +-+
T Consensus 537 ~av~aF~rcvtL~Pd~------~eaWnNls~ayi~-~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~---eda 606 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDN------AEAWNNLSTAYIR-LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF---EDA 606 (777)
T ss_pred HHHHHHHHHhhcCCCc------hhhhhhhhHHHHH-HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH---HHH
Confidence 9999999999999754 6789888888666 89999999999999999999999999999998887763 335
Q ss_pred HHHHHHHhh
Q 001064 556 EQLVDKFLM 564 (1167)
Q Consensus 556 r~l~eral~ 564 (1167)
.++|.+.+.
T Consensus 607 ~~A~~rll~ 615 (777)
T KOG1128|consen 607 IKAYHRLLD 615 (777)
T ss_pred HHHHHHHHH
Confidence 555555543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.4e-08 Score=108.94 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 001064 81 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQ----------DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMD 150 (1167)
Q Consensus 81 ~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~----------~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e 150 (1167)
+....|++.|+.||.|.++|..|+.+-..+.. .-.++-..+|++||+.+|++..+|+.|.+...+..+.+
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 45677999999999999999999998776421 11346678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHhcCCCCC---------------CHHHHHHHHH
Q 001064 151 KVVEVYERAVQGVTYSVDIWLHYCIFAINTYG--DPETIRRLFERGLAYVGTDYL---------------SFPLWDKYIE 213 (1167)
Q Consensus 151 ~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~--~~~~Ar~~feral~~~g~d~~---------------s~~lw~~y~~ 213 (1167)
+..+.++++|..+|.+..||..|+.|...... .++.++.+|.++|.....-.. -..+...+..
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985333 578999999999976442111 1356777888
Q ss_pred HHHHhhhHHHHHHHHHHHHhc
Q 001064 214 YEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 214 ~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
|+...|-.++|..+++-+|+.
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHH
Confidence 888999999999999999986
|
|
| >KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.2e-09 Score=90.51 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=66.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..+-|||+|||+++|.+++-++|++||.|..|+| .. +...+|-|||.|++..+|++|+.. +|..+.++.+.|-.-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRi--G~--~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRI--GN--TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEe--cC--ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4688999999999999999999999999998654 22 234689999999999999999987 899999999999764
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 4
|
|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=112.78 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=69.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee-eCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-AGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i-~g~~l~V~ 1106 (1167)
.|+-||||.||.++.|++|..+|++.|+|-++++ ++++.+|.+||||||+|.+.+.|+.||+. |+++| .|+.|.|.
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL-MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL-MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEE-eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 5799999999999999999999999999999986 66888999999999999999999999987 78877 47777764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.8e-06 Score=91.01 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=122.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
|...++=....++.+....++++.-....+++++-..|+..+..+|+.++|.++...+++.. -++.+...+..+ +-
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~L~~~~~~l--~~ 307 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPRLCRLIPRL--RP 307 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChhHHHHHhhc--CC
Confidence 44333332333445555667777666667889999999999999999999999999999854 345544433322 35
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 516 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~ 516 (1167)
++...-.+..++. +...|+++.+++.++.++.+.+.+.+|...|+.||+..+. ..-|.-+++.+.. .|+..
T Consensus 308 ~d~~~l~k~~e~~-l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-------~~~~~~la~~~~~-~g~~~ 378 (400)
T COG3071 308 GDPEPLIKAAEKW-LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-------ASDYAELADALDQ-LGEPE 378 (400)
T ss_pred CCchHHHHHHHHH-HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-------hhhHHHHHHHHHH-cCChH
Confidence 6777778888887 6779999999999999999999999999999999998754 2345667777665 99999
Q ss_pred HHHHHHHHHHhh
Q 001064 517 KARQILVDSLDH 528 (1167)
Q Consensus 517 ~Ar~i~~kal~~ 528 (1167)
+|-.+++++|-+
T Consensus 379 ~A~~~r~e~L~~ 390 (400)
T COG3071 379 EAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999999999854
|
|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=111.03 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=66.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.-+-|||+||+.++|++.|+++|++||.|.+|.. + |-||||.|.+.++|.+|++. ||..|+|..|.|..+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk-~--------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK-P--------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeec-c--------cceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 4578999999999999999999999999998642 2 34999999999999999987 899999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+|..
T Consensus 329 KP~~ 332 (506)
T KOG0117|consen 329 KPVD 332 (506)
T ss_pred CChh
Confidence 8643
|
|
| >COG0724 RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-08 Score=112.99 Aligned_cols=78 Identities=32% Similarity=0.542 Sum_probs=72.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||.++++++|+++|++||.|..+.+ ..++.+|+++|||||+|.+.+++..|+.. ++..|.|+.|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~-~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRL-VRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEe-eeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 599999999999999999999999999998875 45667899999999999999999999988 6899999999999854
|
|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=109.72 Aligned_cols=82 Identities=18% Similarity=0.378 Sum_probs=71.5
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeC--cE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAG--RQ 1102 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g--~~ 1102 (1167)
.|.+.-++|||-||..++|.||+.+|++||.|.+|.| ++|+.||.++|||||.|.+.+++.+|+.+ |-+.|-| ..
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl-~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINL-IKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEe-ecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 3456789999999999999999999999999999975 88999999999999999999999999987 5666765 45
Q ss_pred eEEEecc
Q 001064 1103 VYIEERR 1109 (1167)
Q Consensus 1103 l~V~~~r 1109 (1167)
|.|.++.
T Consensus 109 vqvk~Ad 115 (510)
T KOG0144|consen 109 VQVKYAD 115 (510)
T ss_pred eeecccc
Confidence 7777664
|
|
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.8e-09 Score=100.09 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=73.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+..+||||||+..++++-|.++|-+.|+|.+++| -+++.+...+|||||+|.+.++++=|++. |.+.+-||+|+|..+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i-PkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI-PKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeec-chhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5689999999999999999999999999999875 56788888999999999999999999988 889999999999887
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-06 Score=97.19 Aligned_cols=272 Identities=11% Similarity=-0.005 Sum_probs=196.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
..|..++..+-.+++..|++...|..-+..+..+ ++++.+.--+++.+...|..........+.....++..+|.+.|
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~--~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMML--GRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHH--HhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 5788899999999999999999999766666654 78999999999999999999988888888888888888887777
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS---FPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s---~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
+ +.+.. ....+...+++.+ +.+... ...-+.=...+.-++.++.|..+=-++++
T Consensus 141 ~--------~~~~~------------~~anal~~~~~~~---~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 141 K--------SKQAY------------KAANALPTLEKLA---PSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred h--------hhhhh------------HHhhhhhhhhccc---ccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 6 11111 0122223333333 344321 11122222333445778888877777888
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
+...+.+.++-...
T Consensus 198 ld~~n~~al~vrg~------------------------------------------------------------------ 211 (486)
T KOG0550|consen 198 LDATNAEALYVRGL------------------------------------------------------------------ 211 (486)
T ss_pred cccchhHHHHhccc------------------------------------------------------------------
Confidence 77777766662211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC------------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS------------VTELENWHNYLDFIERDGDFNKVVKLYERCL 381 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld------------~~~~~~W~~y~~~~e~~g~~~~a~~~yeral 381 (1167)
++.-....+.++..|+++|+ ++ +..+..|..-+.-.-++|.+..|-..|..+|
T Consensus 212 -------~~yy~~~~~ka~~hf~qal~--------ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 212 -------CLYYNDNADKAINHFQQALR--------LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred -------ccccccchHHHHHHHhhhhc--------cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 11112233445555666665 44 3456677777776678899999999999999
Q ss_pred HhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC
Q 001064 382 IACANYPE----YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG 456 (1167)
Q Consensus 382 ~~~p~~~~----~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~ 456 (1167)
.++|++.+ ++...+....++|+..+|+...++|+.+. +...+.++..|..+...+++++|..-|+++ .++..+
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a-~q~~~s 353 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKA-MQLEKD 353 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccc
Confidence 99998764 67777888888999999999999999987 778888889999999999999999999998 444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=91.19 Aligned_cols=113 Identities=7% Similarity=0.049 Sum_probs=103.7
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 88 NIVKAN-SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 88 ~~l~~n-P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
-+.... +++.+..+.++-.+.. .|+++.|.++|+-++..+|.+..+|+.++-.+...|++++|+..|.+++.+.|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~--~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLME--VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344567 8889999999988876 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC
Q 001064 167 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL 203 (1167)
Q Consensus 167 ~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~ 203 (1167)
+....+.+..++ ..|+.+.|++.|+.++..++.++.
T Consensus 103 p~~~~~ag~c~L-~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 103 PQAPWAAAECYL-ACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred chHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999998 789999999999999999876543
|
|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.3e-09 Score=112.39 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=71.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeCc--EeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGR--QVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~-~~i~g~--~l~V 1105 (1167)
+.++||||-|+..+||.+++++|++||.|++|.| +|+. .|.+||||||.|.+.+.|..||+. || ..+.|. +|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~i-lrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYI-LRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhh-eecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 3589999999999999999999999999999986 5554 478999999999999999999988 64 567775 5999
Q ss_pred EeccCCCCC
Q 001064 1106 EERRPNTGS 1114 (1167)
Q Consensus 1106 ~~~r~~~~~ 1114 (1167)
.|+.+.+++
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999877654
|
|
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=119.96 Aligned_cols=72 Identities=28% Similarity=0.420 Sum_probs=64.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V~~ 1107 (1167)
++.|||+|||+++++++|+++|++||.|.+|.| ++ .||||||+|++.++|.+||.. ++..|+|+.|+|.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i-~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMM-LP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-EC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 589999999999999999999999999999865 32 458999999999999999974 68999999999998
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
+.
T Consensus 75 s~ 76 (481)
T TIGR01649 75 ST 76 (481)
T ss_pred cC
Confidence 64
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-06 Score=100.27 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=104.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
.++..++ ..|=...|..+|||.- .|..-+.++...|+..+|..|..+-++.++. ..+|...-.+..
T Consensus 403 ~laell~-slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d--~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 403 LLAELLL-SLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEKDPD--PRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHH-HcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcCCCc--chhHHHhhhhcc
Confidence 4455555 4566667777777544 5777778888888888888888777775554 233422211100
Q ss_pred cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH-----HHHH
Q 001064 252 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY-----KKAK 326 (1167)
Q Consensus 252 ~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y-----~~~~ 326 (1167)
.. .-.|.+. ++-+++..+...| ...+
T Consensus 469 d~-----s~yEkaw--------------------------------------------Elsn~~sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 469 DP-----SLYEKAW--------------------------------------------ELSNYISARAQRSLALLILSNK 499 (777)
T ss_pred Ch-----HHHHHHH--------------------------------------------HHhhhhhHHHHHhhccccccch
Confidence 00 0000000 0111222221111 1234
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL 406 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~ 406 (1167)
+|.++.+.|+..++ ++|-+.+.|+.++-...+.+++..+...|.+|+...|++.+.|.+++..+...++..+
T Consensus 500 ~fs~~~~hle~sl~--------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 500 DFSEADKHLERSLE--------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred hHHHHHHHHHHHhh--------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 55555555555554 4555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 407 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 407 A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
|...+++|++.. -.+..+|..|-.+....|.++.|...|.+.
T Consensus 572 a~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 572 AFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 555555555543 444455555555555555555555555553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=91.15 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=61.7
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
++|.+...-..++..+...|++++|+..|++++..+|.++.+|+.++.++...|++++|..+|++++... |.++..|+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 4444444444555555555566666666666665556556666666655555555666666666555554 455555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
++.++...|++++|...|+++ ++++|++..
T Consensus 91 la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~ 120 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLA-IEICGENPE 120 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhccccch
Confidence 555555555666665555555 455555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-08 Score=111.45 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=71.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
..+|+|+|||+.+...+|+.+|+.||.|..|.| ..+..|+..|||||.|.+..+|..||+. |+..|+||+|-|+|+-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I--P~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI--PRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEc--ccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 589999999999999999999999999999654 4555677779999999999999999988 8999999999999986
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 554
|
|
| >cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.2e-08 Score=83.79 Aligned_cols=72 Identities=35% Similarity=0.650 Sum_probs=62.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+|+|+|||..+++++|+++|+.||.|..+.+. .+. .++++|+|||+|.+.+++..|+.. ++..++|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~-~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIV-RDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEe-eCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 48999999999999999999999999987653 333 336789999999999999999987 6888999999886
|
This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-06 Score=90.97 Aligned_cols=168 Identities=18% Similarity=0.124 Sum_probs=145.2
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
.+|....+ .++..-+.-.|+-+....+..+.+...+.+.++...++..+...|++.+|...+.++.... |++.++|..
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 35666777 7777776777888888888888888889999998889999999999999999999999987 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
++..+.+.|++++|+..|.++ +++.|+.+.+..+++..+.-.|+++.|+.++.++....+.+ ..+-.+++...
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qA-l~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad------~~v~~NLAl~~ 212 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQA-LELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD------SRVRQNLALVV 212 (257)
T ss_pred HHHHHHHccChhHHHHHHHHH-HHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc------hHHHHHHHHHH
Confidence 999999999999999999999 89999999999999999999999999999999998876532 45666777664
Q ss_pred HHHhCCHHHHHHHHHHHH
Q 001064 509 HLVSRNAEKARQILVDSL 526 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal 526 (1167)
- ..|++++|+++-..-+
T Consensus 213 ~-~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 213 G-LQGDFREAEDIAVQEL 229 (257)
T ss_pred h-hcCChHHHHhhccccc
Confidence 4 4999999999866544
|
|
| >smart00361 RRM_1 RNA recognition motif | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.2e-08 Score=84.24 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=52.9
Q ss_pred HHHHHHHHh----cCCCceeeeEeeecCCC--cccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1045 AFEIEEEFQ----NFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1045 ~~~l~~~F~----~~G~i~~v~i~~~~~~~--g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+++|+++|+ +||.|.++...+.++.+ |+++|||||+|.+.++|.+|+.. +|..++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 99999997522445555 88999999999999999999987 8999999999863
|
|
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=114.04 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=68.1
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1029 GEVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
.++++|||+||++ .+|+++|+++|+.||.|.+|+|+ ++ .+|||||+|.+.++|..||.. +|..|.|+.|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~-~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFM-KN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEE-eC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 3578999999998 69999999999999999998763 33 258999999999999999976 8999999999999
Q ss_pred eccCC
Q 001064 1107 ERRPN 1111 (1167)
Q Consensus 1107 ~~r~~ 1111 (1167)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 87654
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-08 Score=96.63 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=73.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+.+||||||.+.+++..|.+.|+.||.|...--.+++..||.++|||||.|.+.+...+||.. ||..++.++|+|+.+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 589999999999999999999999999876433467888999999999999999999999988 8999999999999887
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 653
|
|
| >KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.8e-08 Score=103.36 Aligned_cols=89 Identities=26% Similarity=0.326 Sum_probs=78.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.+.+||||+.+.+|.++++.+|+.||.|..++| ..++.+|++|||+||+|.+.+.+..++..++..|.|+.+.|..
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti-~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTV-PKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceee-eccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 345699999999999999999999999999998876 4577788899999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 001064 1108 RRPNTGSTSR 1117 (1167)
Q Consensus 1108 ~r~~~~~~~~ 1117 (1167)
.+.+.++.++
T Consensus 177 ~r~~~pg~~~ 186 (231)
T KOG4209|consen 177 KRTNVPGMGR 186 (231)
T ss_pred eeeecCCcCC
Confidence 9887554443
|
|
| >KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.2e-08 Score=102.65 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=74.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+...|||..|.+-+++++|.-+|+.||.|.+|.| +++++||.+-.||||+|++.+++++|.-. .++.|++++|.|++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceV-IRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEV-IRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeE-EecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4588999999999999999999999999999997 89999999999999999999999999855 789999999999986
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 53
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.8e-05 Score=98.54 Aligned_cols=211 Identities=11% Similarity=0.008 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----CHHHHHHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWIRY 394 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~-----~~~~w~~y 394 (1167)
.++...+++..|...+++++....-+..+..+.....+...+..+...|++++|..++++++..... ....+...
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 3455667777777777776652100000000111122334455556679999999999999876331 23345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhccC-hHHHH-----HHHHHHHHcCCHHHHHHHHHHHhhhcCCChH----HHHHHH
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVKRL-PEIHL-----FAARFKEQNGDIDGARAAYQLVHTETSPGLL----EAIIKH 464 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p~~-~~l~~-----~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~----~~~~~~ 464 (1167)
+.++...|+.+.|...+.++..+..... ...+. .....+...|+.+.|...+... ....+... ..+...
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~-~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQA-PKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhc-CCCCCccchhHHHHHHHH
Confidence 7777889999999999999987642211 11111 1123344578999999988775 22221111 224567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+.++...|++++|+.+|++++..............++..++..++. .|+.++|+..+.+|++.....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~-~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ-QGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhCcc
Confidence 7778889999999999999999754321112223456677877766 999999999999999977543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.7e-05 Score=82.87 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
.+-..|+..+.+.|+.+.|..+.+.+|+.. .++. .+.++..+ .-++.+.-.+..++.++.+ |++|.++..++.+..
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D~~-L~~~~~~l-~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~ 339 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WDPR-LCRLIPRL-RPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLAL 339 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cChh-HHHHHhhc-CCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHH
Confidence 445556666666677777777777777663 2333 22222222 2355556666666666666 666777777777777
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
+++.+.+|...|+.+ +...| +...|.-.+..+.++|+..+|..++++++...
T Consensus 340 k~~~w~kA~~~leaA-l~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 340 KNKLWGKASEALEAA-LKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HhhHHHHHHHHHHHH-HhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 777777777777766 44444 33445555666667777777777777776543
|
|
| >KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.8e-08 Score=103.42 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=68.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeCcEeE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVY 1104 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g~~l~ 1104 (1167)
.|...++||||+|...+++.+|+++|.+||+|+++.+.. .++||||+|.+..+|+.|.+. +.+.|+|++|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-------ccccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 344679999999999999999999999999999976533 346999999999999999977 68999999999
Q ss_pred EEeccCC
Q 001064 1105 IEERRPN 1111 (1167)
Q Consensus 1105 V~~~r~~ 1111 (1167)
|.+.++.
T Consensus 297 i~Wg~~~ 303 (377)
T KOG0153|consen 297 IKWGRPK 303 (377)
T ss_pred EEeCCCc
Confidence 9999883
|
|
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-08 Score=113.36 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=70.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+..+||||||.+++++++|+.+|+.||.|..|.+ .++..||++||||||+|.+.+++++|++. ||++|-|+.|+|...
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l-~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQL-TKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeee-ccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 3455999999999999999999999999999864 45666999999999999999999999866 899999999998654
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 356 ~ 356 (549)
T KOG0147|consen 356 T 356 (549)
T ss_pred e
Confidence 4
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00025 Score=84.05 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=89.1
Q ss_pred ccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHH
Q 001064 47 NEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKI 118 (1167)
Q Consensus 47 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~--------~~~~~~a 118 (1167)
+++..|-..+|.+++--.. +.-=+++.-.|.++.|+..++-+- .-..|..+++.+-+.. -|+...|
T Consensus 713 ~pLrdFvgle~Cd~~TRka-ml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~a 786 (1416)
T KOG3617|consen 713 KPLRDFVGLENCDESTRKA-MLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA 786 (1416)
T ss_pred hhHHHhcCccccCHHHHHh-hhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhh
Confidence 4556666677777766522 222334444488888877654332 3457888888776621 0223333
Q ss_pred H--HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 119 R--RVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 119 r--~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
| ++++++. .+|+..+ -+.+-+.+..|-+++|..+|++|-+.+ |. -+++. ..|.+++|.++-|.-
T Consensus 787 RgaRAlR~a~-q~~~e~e--akvAvLAieLgMlEeA~~lYr~ckR~D-----Ll---NKlyQ-s~g~w~eA~eiAE~~-- 852 (1416)
T KOG3617|consen 787 RGARALRRAQ-QNGEEDE--AKVAVLAIELGMLEEALILYRQCKRYD-----LL---NKLYQ-SQGMWSEAFEIAETK-- 852 (1416)
T ss_pred hhHHHHHHHH-hCCcchh--hHHHHHHHHHhhHHHHHHHHHHHHHHH-----HH---HHHHH-hcccHHHHHHHHhhc--
Confidence 3 2333333 2343222 355666677788888888888886642 22 23333 456666665554311
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001064 197 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 231 (1167)
Q Consensus 197 ~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~ 231 (1167)
...| -...+..|+.++...++++.|...|++.
T Consensus 853 -DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 853 -DRIH--LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred -ccee--hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 1111 2235666777777777777777777664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-07 Score=97.63 Aligned_cols=111 Identities=21% Similarity=0.151 Sum_probs=95.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
=+.+.++|.+|+..|.++ ++++|.++-.|+.++..+.++|.++.|++-.+.||.++| .+...|..++..++.
T Consensus 90 ~~m~~~~Y~eAv~kY~~A-I~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp------~yskay~RLG~A~~~- 161 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEA-IELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP------HYSKAYGRLGLAYLA- 161 (304)
T ss_pred HHHHhhhHHHHHHHHHHH-HhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHc-
Confidence 344678999999999999 899999999999999999999999999999999999985 346788888877665
Q ss_pred hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChh
Q 001064 512 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK 550 (1167)
Q Consensus 512 ~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~ 550 (1167)
.|++++|...|++||+++|++..++..+-.-+..+..+.
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999887777776665443
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.2e-08 Score=101.03 Aligned_cols=71 Identities=25% Similarity=0.512 Sum_probs=65.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
.+|||||||..+++.+|+.+|++||+|..|+| | |.||||..++...++.||.. +|..|+|..|+|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI-v--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI-V--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee-e--------cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 47999999999999999999999999999986 4 46999999999999999985 89999999999998876
Q ss_pred C
Q 001064 1111 N 1111 (1167)
Q Consensus 1111 ~ 1111 (1167)
+
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 6
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.4e-07 Score=95.43 Aligned_cols=122 Identities=15% Similarity=0.038 Sum_probs=111.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG---SMDKVV 153 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~---~~e~A~ 153 (1167)
..++.-+.+++..|..||.|.+.|..|++.+..+ ++...|...|.+++.+.|++.++|..|++.+..+. ...++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 4577888999999999999999999999999984 89999999999999999999999999999988654 367899
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
.+|+++|+.+|.++.....++.-++ ..|++.+|...++..|+..+.+
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~af-e~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAF-EQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999988888888 6799999999999999988765
|
|
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.6e-07 Score=112.22 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=61.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCcee------eeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQ 1102 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~------v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~ 1102 (1167)
...++|||||||+++|+++|+++|..++.+.. +. .+.+...++.+|||||+|.+.++|..||.++|+.|.|+.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~-~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~ 251 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGK-HVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVF 251 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCC-ceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCce
Confidence 35699999999999999999999997521110 00 011222345689999999999999999988999999999
Q ss_pred eEEEec
Q 001064 1103 VYIEER 1108 (1167)
Q Consensus 1103 l~V~~~ 1108 (1167)
|+|...
T Consensus 252 l~v~r~ 257 (509)
T TIGR01642 252 LKIRRP 257 (509)
T ss_pred eEecCc
Confidence 999643
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=102.22 Aligned_cols=82 Identities=18% Similarity=0.393 Sum_probs=74.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++||||+||.++++.++++.|.+||.|..+.+ +.|..+.+.+||+||+|.+.+++.+++...-+.|+|+.+.|..+-
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~-~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVI-MYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEE-eecccccccccceeeEeccccccceecccceeeecCceeeEeecc
Confidence 3579999999999999999999999998888754 557788999999999999999999999888999999999998887
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 175 pk~ 177 (311)
T KOG4205|consen 175 PKE 177 (311)
T ss_pred chh
Confidence 664
|
|
| >PF13893 RRM_5: RNA recognition motif | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-07 Score=75.05 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=46.2
Q ss_pred HHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1048 IEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1048 l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
|.++|++||.|.++.+ ..+. +|+|||+|.+.++|..|++. +|..++|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~--~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKI--FKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEE--ETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEE--EeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999999999654 2221 58999999999999999986 999999999999874
|
(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A .... |
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.4e-08 Score=105.37 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=74.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++||||+|+++++++.|++.|++||+|.+|.| ++++.+++++||+||+|++.+.+.++|....+.|.|+.|.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~v-m~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVV-MRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEE-eccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 5699999999999999999999999999999964 789999999999999999999999999888999999998887765
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.8e-06 Score=94.59 Aligned_cols=140 Identities=12% Similarity=0.024 Sum_probs=122.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH
Q 001064 88 NIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV 167 (1167)
Q Consensus 88 ~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~ 167 (1167)
.....+|.-..+|+..+...... +.++.|++.++.+++..|+|..+|...++++++.|+..+|.+.|+++|...|++.
T Consensus 297 ~~~~~~~~~~aa~YG~A~~~~~~--~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 297 LAKRSKRGGLAAQYGRALQTYLA--GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred HHHHhCccchHHHHHHHHHHHHh--cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Confidence 34444588999999887776653 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 168 DIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 168 ~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
-+|+.|++.++ ..|++.+|..++.+.+...+ .....|..+++-...+|+..++..-+-..+.
T Consensus 375 ~l~~~~a~all-~~g~~~eai~~L~~~~~~~p---~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 375 LLQLNLAQALL-KGGKPQEAIRILNRYLFNDP---EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHH-hcCChHHHHHHHHHHhhcCC---CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999 78999999999999998544 4578999999999999988888766655543
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-07 Score=99.13 Aligned_cols=95 Identities=20% Similarity=0.377 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 121 VYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 121 ~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.|.|....||.++.+|..|+....+.+.+.+...+|..||+.||.++|||+..|.++++..++++.+|.+|.++|. .
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR---~ 171 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR---M 171 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc---c
Confidence 4567778899999999999999999999999999999999999999999999999999888999999999999999 5
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 001064 201 DYLSFPLWDKYIEYEYMQ 218 (1167)
Q Consensus 201 d~~s~~lw~~y~~~e~~~ 218 (1167)
+..++.||..|.++|+..
T Consensus 172 N~~~p~iw~eyfr~El~y 189 (435)
T COG5191 172 NSRSPRIWIEYFRMELMY 189 (435)
T ss_pred CCCCchHHHHHHHHHHHH
Confidence 666899999999999874
|
|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.4e-07 Score=100.62 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=71.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.-++.|||.+|...+...+|+.+|++||.|.-.+| |.+-.+--.+|||||++.+.++|.++|+. +.+.|.|+.|.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKV-VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKV-VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceee-eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 35789999999999999999999999999988776 44544444689999999999999999987 68999999999998
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++.-+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.3e-05 Score=86.33 Aligned_cols=138 Identities=11% Similarity=-0.035 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
+.....|+-.+.-....|++++|+..+...+... |+++.++...++++.+.++.++|.+.++++ +.+.|+..-+|+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka-l~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKA-LALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCCCccHHHHHH
Confidence 5666777777766666777888888887777766 777777777788888888888888888887 67788877778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
++.+.+.|+..+|+.++.+.+..+|. +|..|..+++.+.. .|+..+|...+-+++.+...
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~------dp~~w~~LAqay~~-~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPE------DPNGWDLLAQAYAE-LGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCC------CchHHHHHHHHHHH-hCchHHHHHHHHHHHHhCCC
Confidence 88888888888888888877777653 36677777777554 77777777777766665544
|
|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-07 Score=98.06 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=72.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.-.+|||..+.++.+++||+.+|+-||+|++|.+ .+...++.+||||||+|.+..+...||.. |-+.++|+.|+|-..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L-Ar~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEe-eccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3579999999999999999999999999999984 67777788999999999999999999977 789999999999765
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
-.
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 43
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-06 Score=97.51 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=68.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
-|..+...|++++|+..|.+|+.+. |+++.+|+.++.++...|++++|+..++++ ++++|++..+|+.++.++..+|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A-l~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKA-IELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHHhCC
Confidence 3444455677777777777777765 666777777777777777777777777776 66777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhC
Q 001064 474 LEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~~~ 490 (1167)
+++|+..|++++.+.|+
T Consensus 86 ~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 86 YQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77788888887777764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.2e-06 Score=79.24 Aligned_cols=109 Identities=18% Similarity=0.073 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001064 424 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 500 (1167)
Q Consensus 424 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l 500 (1167)
++++..+..+.+.|++++|...|+++ +...|++ ..+++.++.++.+.|++++|+.+|++++...|+. +..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAF-LKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---PKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---CcccHH
Confidence 45566666677777777777777776 4556654 4567777777777778888888888877776542 222456
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~ 537 (1167)
+..++.++.. .|++++|..+|+++++..|++.....
T Consensus 79 ~~~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 79 LLKLGMSLQE-LGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHH-hCChHHHHHHHHHHHHHCcCChhHHH
Confidence 6667777655 77788888888888888777765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=79.83 Aligned_cols=100 Identities=21% Similarity=0.177 Sum_probs=83.1
Q ss_pred CC-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 349 LS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 349 ld-~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
++ ++.++....|+-.+...|+++.|..+|+-....+|.+.+.|+.++.++...|++++|+..|.+|+.+. |+++..++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~ 107 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPW 107 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 44 55566677777777778888888888888888888888888888888888888888888888888877 78888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
..+..+...|+.+.|++.|+.+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888887
|
|
| >KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.7e-07 Score=89.24 Aligned_cols=79 Identities=27% Similarity=0.329 Sum_probs=68.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcC-CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNF-GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..-+||+.+|+.+.+..+..+|.+| |.|..++ +-|++.||.+||||||+|++.+.|.-|-+. |+..|.|+.|.|.+-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r-lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFR-LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEE-eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 4678999999999999999999998 6666654 458999999999999999999999988876 899999999888764
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
-+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 43
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-06 Score=99.06 Aligned_cols=92 Identities=7% Similarity=-0.010 Sum_probs=56.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
++++.|++.|.++|+.+|.+..+|+.++..+..+ +++++|+..++++|.++|++..+|+.++.++...|+++.|+..|
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~--g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKL--GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5566666666666666666666666666665553 55666666666666666666666666666666666666666666
Q ss_pred HHHHhccCCCHHHH
Q 001064 157 ERAVQGVTYSVDIW 170 (1167)
Q Consensus 157 eraL~~~P~s~~lw 170 (1167)
++||.+.|.+..+.
T Consensus 94 ~~al~l~P~~~~~~ 107 (356)
T PLN03088 94 EKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHhCCCCHHHH
Confidence 66666666554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.7e-06 Score=89.35 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
+.-..+.++|.+|+..|.++|+ ++|.+.-.+.+-+..+.+.|.++.|++-.+.||..+|++...|.+++..+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3344555666666666666665 55555555555555555666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
..+|++++|...|++|+++. |++...
T Consensus 160 ~~~gk~~~A~~aykKaLeld-P~Ne~~ 185 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELD-PDNESY 185 (304)
T ss_pred HccCcHHHHHHHHHhhhccC-CCcHHH
Confidence 66666666666666666655 444433
|
|
| >KOG0533 consensus RRM motif-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-06 Score=89.02 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=70.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.-..+|+|.|||+.|+++||+++|..||.++.+- +.-...|++.|.|=|.|...++|.+|++. +++.++|+.++++
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~--vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVA--VHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEe--eccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 33448899999999999999999999999888854 55566799999999999999999999988 8999999999987
Q ss_pred ecc
Q 001064 1107 ERR 1109 (1167)
Q Consensus 1107 ~~r 1109 (1167)
...
T Consensus 158 ~i~ 160 (243)
T KOG0533|consen 158 IIS 160 (243)
T ss_pred Eec
Confidence 654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00043 Score=82.24 Aligned_cols=86 Identities=22% Similarity=0.208 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 386 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 386 ~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
.++.+|-=+++|++..|++|.|+.+|..|-. |+...++++-+|+.++|..+-+. .++..+.+-++
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhla 974 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLA 974 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHH
Confidence 4456888888888888888888888877754 34455556667777777765443 24555666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 001064 466 NMERRLGNLEDAFSLYEQAIA 486 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~ 486 (1167)
..++..|++-+|...|.+|-.
T Consensus 975 R~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 777888888888887776644
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00096 Score=72.51 Aligned_cols=304 Identities=12% Similarity=0.121 Sum_probs=169.6
Q ss_pred HhCCHHHHHHHHHHHHhccC---CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH
Q 001064 145 RVGSMDKVVEVYERAVQGVT---YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 221 (1167)
Q Consensus 145 ~~~~~e~A~~l~eraL~~~P---~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~ 221 (1167)
...++..|+.+++-.+...- ++.++|+.+|.|- +|++++|...|+.+... +--...+|..++-...=.|.+
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh---LgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH---LGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh---hccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHHHH
Confidence 34567777777766664432 4788999999994 59999999999998873 222346777666544445668
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcc
Q 001064 222 SRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPV 301 (1167)
Q Consensus 222 ~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~ 301 (1167)
.+|..+-.++-+.|..+ ..+|....++
T Consensus 108 ~eA~~~~~ka~k~pL~~-RLlfhlahkl---------------------------------------------------- 134 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCI-RLLFHLAHKL---------------------------------------------------- 134 (557)
T ss_pred HHHHHHHhhCCCChHHH-HHHHHHHHHh----------------------------------------------------
Confidence 88877766665555542 1222221111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001064 302 SAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 381 (1167)
Q Consensus 302 ~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral 381 (1167)
.+.++|. .|...+. |. .+--..++...-..-.+.+|+.+|.|+|
T Consensus 135 ----ndEk~~~---------------------~fh~~Lq---------D~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 135 ----NDEKRIL---------------------TFHSSLQ---------DT--LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred ----CcHHHHH---------------------HHHHHHh---------hh--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111 1111111 00 0001111111111124778999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH--cCCHHHHHHHHHHHhhhcCCChHH
Q 001064 382 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ--NGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~--~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
..+|.+..+=..+|.++.+..-++-+.+++.--+..+ |+++-...+.+-.+.+ +|+..++. ...+....+...+
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E--~k~ladN~~~~~~- 254 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDE--KKELADNIDQEYP- 254 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHH--HHHHHhcccccch-
Confidence 9999888888888888888887887877777777777 6666555554433333 45443332 1221111121111
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHH
Q 001064 460 AIIKHANMERRL-----GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 534 (1167)
Q Consensus 460 ~~~~~a~~e~r~-----g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~ 534 (1167)
.+....|. .+-+.|..++--.+... |+.-.+++-+..+ .+++++|..+.+. +.|..+.
T Consensus 255 ----f~~~l~rHNLVvFrngEgALqVLP~L~~~I---------PEARlNL~iYyL~-q~dVqeA~~L~Kd---l~PttP~ 317 (557)
T KOG3785|consen 255 ----FIEYLCRHNLVVFRNGEGALQVLPSLMKHI---------PEARLNLIIYYLN-QNDVQEAISLCKD---LDPTTPY 317 (557)
T ss_pred ----hHHHHHHcCeEEEeCCccHHHhchHHHhhC---------hHhhhhheeeecc-cccHHHHHHHHhh---cCCCChH
Confidence 22222222 23356666666655554 4455555545344 8899999988774 4677763
Q ss_pred HHH----HHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 535 LLE----ALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 535 l~~----~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
-+. .++.+....++.+.++.+.+.|..+-.
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 332 233344444555566666666665533
|
|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=88.87 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=69.6
Q ss_pred CccEEEEecCCCCCCHHHHHH----HHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEE----EFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++.+|||.||+..+..++|+. +|++||.|.+|. -.++.+.+|-|||.|.+.+.|-.|+.. +|+.+-|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~----a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDIS----AFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEE----ecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 445999999999999999988 999999998743 234678999999999999999999987 79999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|.+++.+.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99988654
|
|
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.7e-07 Score=105.67 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=71.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.++.|+|+|||+.++..+++.+|+.||.|++|+|... ...+.++|||||+|-++.++.+|+.. ..+.+-||+|.++++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 4789999999999999999999999999999887554 34466799999999999999999987 578899999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 753
|
|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-06 Score=99.47 Aligned_cols=73 Identities=25% Similarity=0.468 Sum_probs=65.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.|||+||+.+++..+|.++|+.||.|.+|++..+ ..| +||| ||+|++.++|++||.. ||..++|+.|.|....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 3999999999999999999999999999987443 234 8999 9999999999999988 8999999999996543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0036 Score=82.87 Aligned_cols=283 Identities=9% Similarity=0.018 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----H--HH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----P--EY 390 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~-~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~----~--~~ 390 (1167)
+..++...++++.+...+++++.. ....+. .....+..++..+...|++++++.++++++...... . ..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAE----LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 344566677888888888888762 011111 112234445555677899999999999999763321 1 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc----CC-ChH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKR-------LPEIHLFAARFKEQNGDIDGARAAYQLVHTET----SP-GLL 458 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-------~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~----~P-~~~ 458 (1167)
+..++..+...|++++|...+++++.+.... ...++...+.++...|++++|+..+.+++ .+ .+ ...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al-~~~~~~~~~~~~ 612 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL-EVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH-HhhhccCchHHH
Confidence 4556677778999999999999998865321 11234456777888899999999999873 32 12 133
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHH--
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPL-- 535 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~-~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l-- 535 (1167)
..+...+.+....|++++|...+++++........ ........ ......+...|+.+.|..++............+
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY-HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 44566777888999999999999999887542110 00000111 111122334789999999988776533222211
Q ss_pred --HHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 536 --LEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 536 --~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+..++......+. .+.+..++++++....... ..-....+...+...+...|+.+.......+..++....
T Consensus 692 ~~~~~~a~~~~~~g~---~~~A~~~l~~al~~~~~~g---~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 692 GQWRNIARAQILLGQ---FDEAEIILEELNENARSLR---LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhC---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 2334444444454 4456777777765422111 112344556667777888999999999999999988653
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-05 Score=87.70 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=121.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHH
Q 001064 375 KLYERCLIACANYPEYWIRYVLCMEASGS------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA 442 (1167)
Q Consensus 375 ~~yeral~~~p~~~~~w~~ya~~l~~~g~------------~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A 442 (1167)
.-|++.+..+|++.+.|+.|+.+....-. .+.-+.+|++|++.+ |++..+++.+-....+..+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 45778888889999999999987765422 345677899999987 78999999998888888888888
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhCCCccC------------chHHHHHHHHHH
Q 001064 443 RAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYEQAIAIEKGKEHSQ------------TLPMLYAQYSRF 507 (1167)
Q Consensus 443 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~~~~kAl~~~~~~~~~~------------~~~~l~~~~a~~ 507 (1167)
.+.++++ +..+|++..+|..|.++.... -.++.++.+|.++|.......... ..-.++..+..|
T Consensus 85 ~~~we~~-l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEEL-LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHH-HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8889997 677999999999999987652 358899999999998765322211 223356788999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhc
Q 001064 508 LHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 508 ~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
+.. .|-.+.|..+|+-.|+++
T Consensus 164 l~~-aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 164 LRQ-AGYTERAVALWQALLEFN 184 (321)
T ss_pred HHH-CCchHHHHHHHHHHHHHH
Confidence 877 999999999999999975
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.1e-06 Score=73.29 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
.|+.++..+.. .+++++|...|++++...|.+...|..++.++...+++++|+++|++++...|.+..+|..++.++.
T Consensus 2 ~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYK--LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHH--HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 46667776665 3678888888888888888887888888888888888888888888888888877778888877777
Q ss_pred hhcCCHHHHHHHHHHHHHh
Q 001064 179 NTYGDPETIRRLFERGLAY 197 (1167)
Q Consensus 179 ~~~~~~~~Ar~~feral~~ 197 (1167)
..++++.|+..|++++..
T Consensus 80 -~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 -KLGKYEEALEAYEKALEL 97 (100)
T ss_pred -HHHhHHHHHHHHHHHHcc
Confidence 567788888888877763
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-05 Score=76.68 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=99.8
Q ss_pred HcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC---hHHHHHHHHHHHHcCCH
Q 001064 366 RDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDI 439 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~---~~l~~~~a~~~e~~g~~ 439 (1167)
..++...+...+++.+...|.. ...++.++..+...|++++|...|+.++... ++. +.+++.++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 4788889999999999998888 4578888999999999999999999999865 332 45777889999999999
Q ss_pred HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 440 DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 485 (1167)
Q Consensus 440 ~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl 485 (1167)
++|+..++.+ .-.+-...++...++++.+.|++++|+..|++||
T Consensus 102 d~Al~~L~~~--~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI--PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc--cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999774 3344456678899999999999999999999985
|
|
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=80.78 Aligned_cols=84 Identities=25% Similarity=0.322 Sum_probs=67.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---CcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~---g~~l~V 1105 (1167)
..++|||.+||.++...+|..+|..|---....+...++...-++-+|||+|.+..+|.+|+.+ ||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3599999999999999999999998855555444444443334567999999999999999988 899987 667999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
+.++.+..
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99987654
|
|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=100.55 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=67.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+++||||+|+..+++.+|+++|+.||.|.+|.+ + .++|||||......+|.+|+.+ +.+.+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-I------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-c------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 689999999999999999999999999999753 2 2578999999999999999988 7899999999999987
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.21 E-value=5e-05 Score=76.24 Aligned_cols=116 Identities=10% Similarity=0.078 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHhhcCCHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS---VDIWLHYCIFAINTYGDPE 185 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s---~~lw~~ya~~~~~~~~~~~ 185 (1167)
.++...+...++++++.+|.. ...++.++..+...|++++|...|++++...|+. .-.++.++.+++ ..++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHH
Confidence 368888999999999999999 5778888999999999999999999999977543 346677777877 689999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001064 186 TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 186 ~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l 232 (1167)
+|+..++... ........+...++.+...|+++.|+..|+++|
T Consensus 103 ~Al~~L~~~~----~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIP----DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhcc----CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999996632 334456788899999999999999999999875
|
|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-06 Score=89.56 Aligned_cols=72 Identities=26% Similarity=0.516 Sum_probs=63.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
..+|||+||+.+.+.+|+.+|..||.|.++.+ ..||+||+|++..+|..|+.. ++..|+|-.+.|+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---------ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 47899999999999999999999999998653 237999999999999999976 89999998899999886
Q ss_pred CC
Q 001064 1111 NT 1112 (1167)
Q Consensus 1111 ~~ 1112 (1167)
..
T Consensus 73 ~~ 74 (216)
T KOG0106|consen 73 KR 74 (216)
T ss_pred cc
Confidence 53
|
|
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-06 Score=98.86 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=67.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g--~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++|||+||++++|.++|..+|.+.|.|.++.|..+.+..+ .+.|||||+|.+.++|+.|+.. +|+.|+|+.|.|...
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 4499999999999999999999999999987654332211 2459999999999999999998 799999999999888
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.6e-05 Score=74.89 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC---HHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS---VDIW 170 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s---~~lw 170 (1167)
.+.++.++..+.. .+++++|.+.|++++..+|++ ...++.++.++.+.++++.|+.+|++++..+|.+ ..+|
T Consensus 2 ~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLK--AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3567777777776 478888888888888888876 4678888888888888888888888888887764 5677
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
+..+..+. ..+++++|...|++++...|.+
T Consensus 80 ~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 80 LKLGMSLQ-ELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHH-HhCChHHHHHHHHHHHHHCcCC
Confidence 77777777 5788888888888888866554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=71.49 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
|...+..+...|++++++.+|++++...|.+..+|..++.++...+++++|...|++++... +....++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555555555555555555555444 33444444444444444
Q ss_pred CCHHHHHHHHHHH
Q 001064 437 GDIDGARAAYQLV 449 (1167)
Q Consensus 437 g~~~~A~~~~~~a 449 (1167)
|++++|...+.++
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5555555444443
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.6e-06 Score=89.17 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=67.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|+||||.+.++.++|+..|.+||+|..++| + |+|+||.|+-.+++..||.. ++.+|.|++++|...
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdi-v--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI-V--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeee-e--------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4589999999999999999999999999999886 3 46999999999999999977 899999999999887
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
..|-+
T Consensus 148 tsrlr 152 (346)
T KOG0109|consen 148 TSRLR 152 (346)
T ss_pred ccccc
Confidence 66543
|
|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-06 Score=89.71 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=66.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeCc--EeEEE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGR--QVYIE 1106 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~-~~i~g~--~l~V~ 1106 (1167)
.++||||-|...-+|+|++.+|..||.|.+|.+ ++ ...|.+|||+||.|.+..+++.||.. +| ..+-|- .|.|.
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tv-lr-g~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTV-LR-GPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEE-ec-CCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 489999999999999999999999999999875 33 44588999999999999999999987 43 445453 48898
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
++...+
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 886543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.5e-06 Score=69.63 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=48.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV 167 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~ 167 (1167)
.++..+.. .|++++|+++|+++++.+|.+..+|+.++.++..+|++++|+.+|++++...|+++
T Consensus 2 ~~a~~~~~--~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQ--QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH--CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 34555554 37888888888888888888888888888888888888888888888888877763
|
|
| >KOG0226 consensus RNA-binding proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-06 Score=87.01 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=72.8
Q ss_pred CCCCCCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCc
Q 001064 1023 SLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR 1101 (1167)
Q Consensus 1023 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~ 1101 (1167)
+..+.+..-.+||.|.|..+++++.|...|.+|-.....++ ++++.||+++|||||.|.+..++..|+.. +|..++.|
T Consensus 182 sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akv-iRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 182 SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKV-IRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ccccCccccceeecccccccccHHHHHHHHHhccchhhccc-cccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 34455566789999999999999999999999987776665 78999999999999999999999999977 79999999
Q ss_pred EeEEE
Q 001064 1102 QVYIE 1106 (1167)
Q Consensus 1102 ~l~V~ 1106 (1167)
.|+..
T Consensus 261 piklR 265 (290)
T KOG0226|consen 261 PIKLR 265 (290)
T ss_pred hhHhh
Confidence 88774
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.2e-05 Score=77.08 Aligned_cols=130 Identities=11% Similarity=0.000 Sum_probs=101.8
Q ss_pred HHHHHhCC--CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001064 87 WNIVKANS--SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQ 161 (1167)
Q Consensus 87 ~~~l~~nP--~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~ 161 (1167)
...+..++ .....++.++..+.. .+++++|...|++++...|+. ..+|..++.++.+.|++++|+..|++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQA--DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444 455566788888776 489999999999999987764 46899999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHH
Q 001064 162 GVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDR 241 (1167)
Q Consensus 162 ~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~ 241 (1167)
..|.+...|..++..+. ..++...+...++.++. .+++|..+|++++...+.++..
T Consensus 101 ~~p~~~~~~~~lg~~~~-~~g~~~~a~~~~~~A~~-----------------------~~~~A~~~~~~a~~~~p~~~~~ 156 (172)
T PRK02603 101 LNPKQPSALNNIAVIYH-KRGEKAEEAGDQDEAEA-----------------------LFDKAAEYWKQAIRLAPNNYIE 156 (172)
T ss_pred hCcccHHHHHHHHHHHH-HcCChHhHhhCHHHHHH-----------------------HHHHHHHHHHHHHhhCchhHHH
Confidence 99999999998888877 56777666666665553 3677888888888887776533
Q ss_pred H
Q 001064 242 Y 242 (1167)
Q Consensus 242 ~ 242 (1167)
.
T Consensus 157 ~ 157 (172)
T PRK02603 157 A 157 (172)
T ss_pred H
Confidence 3
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.6e-06 Score=91.48 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=65.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
...++|||+|||+++|+..|++-|..||.|..++| + ..|+++| .|.|.++++|+.|+.. +|..++||.|+|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-m---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-M---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhh-h---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 35688999999999999999999999999999876 2 2456776 8999999999999988 89999999999975
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=68.69 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhccC
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG-SMDKVVEVYERAVQGVT 164 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~-~~e~A~~l~eraL~~~P 164 (1167)
+...|..++..+.. .+++++|+..|+++|..+|++..+|..++.++..+| ++++|++.|+++|++.|
T Consensus 2 ~a~~~~~~g~~~~~--~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ--QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56677777777776 367788888888888888888888888888887777 67788888888877765
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.9e-06 Score=73.19 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~ 189 (1167)
+++++.|..+|+++++..|. +..+|+.+|..+.+.|++++|..++++ +...+.+.+.++.+++.+. ..+++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL-KLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH-HTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH-HhCCHHHHHH
Confidence 36889999999999999995 467899999999999999999999999 8778888888888888888 6899999999
Q ss_pred HHHHH
Q 001064 190 LFERG 194 (1167)
Q Consensus 190 ~fera 194 (1167)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0088 Score=65.30 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=98.2
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCC---CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSS---DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV 146 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~---d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~ 146 (1167)
+-+|.. .++..|+..|+-.+..+-. +.+.|........ |++++|...|+.+....--+.++|..++-...-.
T Consensus 30 edfls~-rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL----gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 30 EDFLSN-RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL----GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHhc-ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh----ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH
Confidence 334444 6888888888877765544 4556665555433 7999999999999987766789999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHH
Q 001064 147 GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAM 226 (1167)
Q Consensus 147 ~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~ 226 (1167)
|.|.+|..+-++|-+ .|....|.++.+.- .++-++. -.|..-|+..-. ..|-..-+.+.. -.+.+|+.
T Consensus 105 g~Y~eA~~~~~ka~k-~pL~~RLlfhlahk----lndEk~~-~~fh~~LqD~~E----dqLSLAsvhYmR--~HYQeAId 172 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK-TPLCIRLLFHLAHK----LNDEKRI-LTFHSSLQDTLE----DQLSLASVHYMR--MHYQEAID 172 (557)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHHHHHH----hCcHHHH-HHHHHHHhhhHH----HHHhHHHHHHHH--HHHHHHHH
Confidence 999999999988866 46777776666543 2332222 333333331111 122222222222 34778888
Q ss_pred HHHHHHhcch
Q 001064 227 IYTRILENPI 236 (1167)
Q Consensus 227 iy~r~l~~p~ 236 (1167)
+|.|+|...+
T Consensus 173 vYkrvL~dn~ 182 (557)
T KOG3785|consen 173 VYKRVLQDNP 182 (557)
T ss_pred HHHHHHhcCh
Confidence 8888887544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=69.19 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
+|++++|.+.|++++..+|++..+|+.++.++++.|++++|+.++++++...|++..+|..+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999999999998888877665
|
... |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.5e-05 Score=85.40 Aligned_cols=204 Identities=15% Similarity=0.128 Sum_probs=138.8
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-A-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-p-~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+..+...+.|+.|+....+.+.++..++..+... . .++-+.+-.|.++...|++++|++++.+. .+.+....
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3445667777887755456666666665544332 1 22334444455666679999998877654 35677778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEA--IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~--~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
...++.+.++++.|.+.++.+ .+++.+..-+ ...|+.+....+++.+|.-+|+...+..+. .+.++...+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~-~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~lng~A~ 209 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNM-QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHHHHHHHH
Confidence 888899999999999999997 7777776543 344444444445799999999997665432 2667777777
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 507 FLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 507 ~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.... .|++++|.++++++++.+|+++..+.+.+-+....|.+. +.+++++.......|+.+
T Consensus 210 ~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~--~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 210 CHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT--EAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC--HHHHHHHHHCHHHTTTSH
T ss_pred HHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHhCCCCh
Confidence 7555 999999999999999999999999988888877776542 234556665555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=68.58 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 001064 422 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~~~~kAl~~~~ 489 (1167)
++.+|...|..+...|++++|+..|+++ ++++|++..+|+.++.++.++| ++++|+..|+++|+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a-i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKA-IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777888888888888888888887 6778888888888888888887 68888888888887764
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00015 Score=83.33 Aligned_cols=151 Identities=8% Similarity=0.081 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 369 DFNKVVKLYERCL---IACANYPEYWIRYVLCMEA---------SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 369 ~~~~a~~~yeral---~~~p~~~~~w~~ya~~l~~---------~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
+.++|+.+|+||+ ..+|.+...+..++.++.. .....+|....++|+++. +.++.++...+.++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4568999999999 8888888765555544332 124567888999999987 89999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 516 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~ 516 (1167)
++++.|...|+++ ..++|+.+.+|+.++.++.-.|+.++|+..+++|+.+.|.+- ...+..-+.+. |. ...++
T Consensus 352 ~~~~~a~~~f~rA-~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~----~~~~~~~~~~~-~~-~~~~~ 424 (458)
T PRK11906 352 GQAKVSHILFEQA-KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR----KAVVIKECVDM-YV-PNPLK 424 (458)
T ss_pred cchhhHHHHHHHH-hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh----HHHHHHHHHHH-Hc-CCchh
Confidence 9999999999999 899999999999999998889999999999999999997431 11222233333 33 55688
Q ss_pred HHHHHHHHHHh
Q 001064 517 KARQILVDSLD 527 (1167)
Q Consensus 517 ~Ar~i~~kal~ 527 (1167)
+|.++|-+--+
T Consensus 425 ~~~~~~~~~~~ 435 (458)
T PRK11906 425 NNIKLYYKETE 435 (458)
T ss_pred hhHHHHhhccc
Confidence 88888876543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00024 Score=79.91 Aligned_cols=171 Identities=12% Similarity=0.176 Sum_probs=96.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH
Q 001064 362 DFIERDGDFNKVVKLYERCLIACAN--Y----PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 435 (1167)
Q Consensus 362 ~~~e~~g~~~~a~~~yeral~~~p~--~----~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~ 435 (1167)
..+...+++++|...|.+|..+.-. + ...|...+.++.+. +.++|..+|++|+.++ ..
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y---------------~~ 106 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIY---------------RE 106 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH---------------Hh
Confidence 3445667788888888887766321 1 12445555544333 6677777777776654 34
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001064 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL-GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 514 (1167)
Q Consensus 436 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~-g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 514 (1167)
.|++..|-.++.++ +.++... |++++|+.+|++|++..............+.+++.+..+ .|+
T Consensus 107 ~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-l~~ 170 (282)
T PF14938_consen 107 AGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-LGR 170 (282)
T ss_dssp CT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT-
T ss_pred cCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-hCC
Confidence 55555555554443 4555555 778888888888888765432212223456677777665 788
Q ss_pred HHHHHHHHHHHHhhcCCC-------HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 515 AEKARQILVDSLDHVQLS-------KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 515 ~~~Ar~i~~kal~~~p~~-------~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
+++|.++|++.....-++ ..++...+...+..++ ...+++.|+++....+
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 888888888877643221 1333333444444444 4457777887766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00017 Score=78.22 Aligned_cols=121 Identities=18% Similarity=0.092 Sum_probs=109.5
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc---CCHHHHHHH
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN---GDIDGARAA 445 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~---g~~~~A~~~ 445 (1167)
+.++.+.-.+.-|..+|.+.+=|..++.++..+|++..|...|.+|+.+. +++++++..++..+..+ .+..++..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 46788888999999999999999999999999999999999999999987 89999999999877653 345779999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 446 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
++++ +.++|.+....+.++.-....|++.+|...++..+...|.+
T Consensus 216 l~~a-l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 216 LRQA-LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHH-HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9998 78999999998888888889999999999999999999764
|
|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=86.43 Aligned_cols=80 Identities=25% Similarity=0.252 Sum_probs=69.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceee------eEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPD------GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1102 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~ 1102 (1167)
.++.|||.|||.++|.+++.++|++||-|.+- +|.+.....|+.||-|.|.|-..+++.-|++. ++..|+|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 46889999999999999999999999988753 23333334589999999999999999999998 799999999
Q ss_pred eEEEecc
Q 001064 1103 VYIEERR 1109 (1167)
Q Consensus 1103 l~V~~~r 1109 (1167)
|+|+.++
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999876
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00019 Score=86.80 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=108.6
Q ss_pred hhhHHHHHHHHHHH--HHc---CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 001064 351 VTELENWHNYLDFI--ERD---GDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS--------GSMDLAHNALARATHV 417 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~--e~~---g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~--------g~~e~A~~vl~rA~~~ 417 (1167)
+.+.+.|..|+.-. ... ++..+|+.+|++|+..+|.+..+|-.++.++... .+...+...+.+++.+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 45567777776533 222 3467999999999999999998888766544332 1234556666666664
Q ss_pred h-hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 418 F-VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 418 ~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
. .+..+.+|..++......|++++|...|+++ ++++|+ ...|..++.++...|+.++|...|++|+.+.|.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA-l~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKA-IDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 1 3566789999998888899999999999999 899994 789999999999999999999999999999975
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.6e-05 Score=70.21 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=55.7
Q ss_pred cCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~--~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
+|+++.|+.+|++++...|. +..+|+.+|.++...|++++|..++++ .... +.+..+++.+|..+.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777778887777774 355677777777777777777777777 4444 4556666667777777777777777
Q ss_pred HHHH
Q 001064 445 AYQL 448 (1167)
Q Consensus 445 ~~~~ 448 (1167)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.8e-05 Score=82.71 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
-+.-+..+-+.|++..|...|+||+....+.. .-+.++..... ++. ..+|+.++..+.+.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~k------~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--ALK------LACHLNLAACYLKL 270 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HHH------HHHhhHHHHHHHhh
Confidence 44556777788899999999999886532111 11112222111 111 23667788888899
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 516 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~ 516 (1167)
+++.+|+..++++ +++.|+|..++++.+..+..+|+++.|+..|++++++.|.+ -.+...++.+--+.....+
T Consensus 271 ~~~~~Ai~~c~kv-Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N------ka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 271 KEYKEAIESCNKV-LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN------KAARAELIKLKQKIREYEE 343 (397)
T ss_pred hhHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 78999999999999999999999999999999999998754 3466666655444333445
Q ss_pred HHHHHHHHHHhhcC
Q 001064 517 KARQILVDSLDHVQ 530 (1167)
Q Consensus 517 ~Ar~i~~kal~~~p 530 (1167)
+.+++|.+.+....
T Consensus 344 kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 344 KEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccc
Confidence 56777777776543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.4e-05 Score=66.51 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 138 KYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 138 ~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
.++..+.+.|++++|+++|+++|+.+|.+.++|+.++.++. ..|++++|+..|+++++..|.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCC
Confidence 57889999999999999999999999999999999999999 7899999999999999977764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00022 Score=86.19 Aligned_cols=145 Identities=11% Similarity=0.026 Sum_probs=108.2
Q ss_pred HhcCCCHHHHHHHHHHHHH--c---CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 001064 382 IACANYPEYWIRYVLCMEA--S---GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN--------GDIDGARAAYQL 448 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~--~---g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~--------g~~~~A~~~~~~ 448 (1167)
..-|.+.++|-.|...+.. . ++.+.|+.+|++|+++. |++...|-.++..+... .++..+....++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446666766666654332 2 24678999999999987 88888877766544332 123455555555
Q ss_pred Hhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001064 449 VHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 526 (1167)
Q Consensus 449 a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal 526 (1167)
+ .. .+|.++.+|..++......|++++|...|++|+.+.+. ...|..+|.++.. .|+.++|...|++|+
T Consensus 410 a-~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~-~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 I-VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYEL-KGDNRLAADAYSTAF 480 (517)
T ss_pred h-hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4 33 36777788888888888899999999999999999852 4578888888766 999999999999999
Q ss_pred hhcCCCHHHH
Q 001064 527 DHVQLSKPLL 536 (1167)
Q Consensus 527 ~~~p~~~~l~ 536 (1167)
.++|..+.++
T Consensus 481 ~L~P~~pt~~ 490 (517)
T PRK10153 481 NLRPGENTLY 490 (517)
T ss_pred hcCCCCchHH
Confidence 9999987433
|
|
| >KOG1995 consensus Conserved Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.1e-05 Score=84.49 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeee------E-eeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG------V-FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1099 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i-~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~ 1099 (1167)
....-+|||-+||..+++.+|.++|.+||.|+.-+ | +.+++.|++.||-|.|.|+|...++.||.. ++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44678999999999999999999999999987531 1 134678999999999999999999999988 799999
Q ss_pred CcEeEEEeccCCCC
Q 001064 1100 GRQVYIEERRPNTG 1113 (1167)
Q Consensus 1100 g~~l~V~~~r~~~~ 1113 (1167)
|..|+|..+..+.+
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999988876654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=83.57 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=106.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 437 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g 437 (1167)
..++.+....++++.|+.+|++..... ++++..++.++...++..+|..++.+++... |.+..++...+.|+...+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 334566677789999999999988775 4577888888888888899999999999877 788999999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001064 438 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 482 (1167)
Q Consensus 438 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~ 482 (1167)
+++.|+.+.+++ +++.|+....|..++.++..+|+++.|...+.
T Consensus 249 ~~~lAL~iAk~a-v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 249 KYELALEIAKKA-VELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred CHHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999998 89999999999999999999999999987766
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.5e-05 Score=76.27 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
..+|+..+.++...|++++|...|++++.+.+. ....+|..++.++...|++++|+..|+++ +.++|.+...|...+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A-l~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA-LERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCcHHHHHHHH
Confidence 456777777777777777777777777766521 12346777777777777777777777776 566777777666666
Q ss_pred HHHH-------HcCCHH-------HHHHHHHHHHHhhh
Q 001064 466 NMER-------RLGNLE-------DAFSLYEQAIAIEK 489 (1167)
Q Consensus 466 ~~e~-------r~g~~e-------~A~~~~~kAl~~~~ 489 (1167)
.++. ++|+++ ++..+|++++...|
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 6666 666666 44555555555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00017 Score=82.85 Aligned_cols=123 Identities=10% Similarity=-0.020 Sum_probs=106.9
Q ss_pred CCchHHHHHHHHH---HhCCCCHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 001064 78 AMSGEEDRLWNIV---KANSSDFSAWTALLEETEKL-------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 147 (1167)
Q Consensus 78 ~~~~a~~~l~~~l---~~nP~d~~aw~~L~~~~~~~-------~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~ 147 (1167)
...+|+..|.+++ ..+|....+|-.|+...... .+.+..+++.+-+++++.+|.+..+....+.+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4467888999999 99999988887776655442 1467788999999999999999999999999888888
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 148 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
+++.+..+|+|++.+.|++.+.|+.++-... ..|+.++|++.++++++..|..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchh
Confidence 8999999999999999999999999988777 7899999999999999966654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=75.62 Aligned_cols=99 Identities=10% Similarity=-0.017 Sum_probs=82.1
Q ss_pred CCchHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSD--FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKV 152 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d--~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A 152 (1167)
.+...-+.|...++.+..+ ...|+.++..+... +++++|...|++++...|+. ...|..++.++...|++++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSE--GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 3455555665566677776 77788899888764 79999999999999998774 35899999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 153 VEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 153 ~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
+..|++++...|...+.|...+.++.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 99999999999999888888877766
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=74.58 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=91.0
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
+.+...+..++..+...|++++|+..|++++...+.. ..+|+.++.++...|++++|+..|.+++... |+....+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 4445667778888889999999999999999876553 4689999999999999999999999999987 77888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
.++.++...|+...+..-++.+ + ..+++|..++++++...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A-~--------------------~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA-E--------------------ALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH-H--------------------HHHHHHHHHHHHHHhhCch
Confidence 8898888888765555444443 1 1245566666666666653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00017 Score=79.42 Aligned_cols=104 Identities=9% Similarity=0.074 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC---CHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTY---SVDI 169 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~---s~~l 169 (1167)
+...|+..+..+.. ..+++++|+..|++++..+|++ ..+|+.++.++...|++++|+..|++++..+|. ..+.
T Consensus 141 ~e~~~Y~~A~~l~~-~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQ-DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 45666666654421 1368899999999999999988 478888899999999999999999999988876 4777
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 170 WLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 170 w~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
|+..+..+. ..|+.++|+.+|++++...|..
T Consensus 220 l~klg~~~~-~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 220 MFKVGVIMQ-DKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCC
Confidence 777777776 5789999999999999866653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00029 Score=77.58 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 437 GDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
|++++|+..|+.. ++..|++ ..+++.++.++...|++++|+..|++++...|+. +..+.++..++.++.. .|
T Consensus 157 ~~y~~Ai~af~~f-l~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~dAl~klg~~~~~-~g 231 (263)
T PRK10803 157 SRQDDAIVAFQNF-VKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAADAMFKVGVIMQD-KG 231 (263)
T ss_pred CCHHHHHHHHHHH-HHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhHHHHHHHHHHHH-cC
Confidence 4444444444443 3334443 2334444444444555555555555555544431 2334444444444333 55
Q ss_pred CHHHHHHHHHHHHhhcCCCH
Q 001064 514 NAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~p~~~ 533 (1167)
+.++|+++|+++++.+|++.
T Consensus 232 ~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCH
Confidence 55555555555555555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.043 Score=58.91 Aligned_cols=414 Identities=12% Similarity=0.056 Sum_probs=212.4
Q ss_pred ccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDK 151 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~ 151 (1167)
++++ .++..++.-+....+.+|.+..+...|+-.+-.. .++..|..+|+++-..+|.-..|-+-++.-..+.+.+..
T Consensus 20 lI~d-~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRD-ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHH-hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 3444 6788889999999999999999999998888774 689999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHH----HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 001064 152 VVEVYERAVQGVTYSVDIWLHYCIF----AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMI 227 (1167)
Q Consensus 152 A~~l~eraL~~~P~s~~lw~~ya~~----~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~i 227 (1167)
|..+....+. +..|.-.-+++ .. ..+|+..+|.+.+..-. .+ ....-...+-++.+.++++.|.+-
T Consensus 97 ALrV~~~~~D----~~~L~~~~lqLqaAIkY-se~Dl~g~rsLveQlp~---en--~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 97 ALRVAFLLLD----NPALHSRVLQLQAAIKY-SEGDLPGSRSLVEQLPS---EN--EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHHhc-ccccCcchHHHHHhccC---CC--ccchhccchheeeccccHHHHHHH
Confidence 8877655543 23333322222 22 34677778877765432 11 111222223333445788999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCC----CccchhhhccccccCCccccccCCcccc
Q 001064 228 YTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP----SETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 228 y~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~----~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
|+.+++....+.-..|+....+-...... .+..+..++.++- .|.... ...++ +| +.-+.++.
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qya------sALk~iSEIieRG~r~HPElgIG-m~teg---iD-vrsvgNt~-- 233 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYA------SALKHISEIIERGIRQHPELGIG-MTTEG---ID-VRSVGNTL-- 233 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHH------HHHHHHHHHHHhhhhcCCccCcc-ceecc---Cc-hhcccchH--
Confidence 99998874443333333322221111110 0101111111110 000000 00000 00 00000100
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
.+.. ..+.........++-..++++.|...+...--|..-. +||- ..++.+.. .-.+++.....-+.=.|..
T Consensus 234 ~lh~-Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e---lDPv---TLHN~Al~-n~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLHQ-SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE---LDPV---TLHNQALM-NMDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHH-HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc---CCch---hhhHHHHh-cccCCccccHHHHHHHHhc
Confidence 0111 1122233444556667777777766554432222111 2222 23333222 1234444333333444555
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 462 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~ 462 (1167)
+|.-.+-+-++..++.+..-++-|..++.+-....-.- ++-++-.+-.+-...-..++|.+-++.+...+.- .+..
T Consensus 306 nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~---kLRk 382 (459)
T KOG4340|consen 306 NPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE---KLRK 382 (459)
T ss_pred CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHH
Confidence 67666777777666666666677776664321110000 1111111111111233455555544443111000 0111
Q ss_pred HHHHHH-HHcCC----HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 463 KHANME-RRLGN----LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 463 ~~a~~e-~r~g~----~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
.-+.+. .|..+ +..++.-|+.+++.- +| +.+.++++.|. ..++..+.++|++..+.+.++
T Consensus 383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y--------LP-VlMa~AkiyW~-~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKY--------LP-VLMAQAKIYWN-LEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHhhcc-ccccHHHHHHHHHHHhhhccc
Confidence 111111 11111 334555666666654 13 45667888887 888999999999888877554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.6e-05 Score=65.36 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=47.6
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 431 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~ 431 (1167)
+.|++++|+.+|++++..+|++.++|+.++.++...|++++|..++++++... |+++.++.+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD-PDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG-TTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCHHHHHHHHhc
Confidence 46777777778888877777777777777777777777777777777777766 555666666554
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.061 Score=59.95 Aligned_cols=292 Identities=16% Similarity=0.089 Sum_probs=183.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD--HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~--~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~ 189 (1167)
.|+-..||+.-.+.-++--.+....+.+.+ .-+-.|+++.|++-|+-++. +|.--.+=+.-+-++-...|+.+.|++
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 366677888777776555555555555443 34456899999999998887 465433333322233335788899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
+-+++-...+.- .-.|....+-....|+|+.|.++.+..........+..-
T Consensus 176 yAe~Aa~~Ap~l---~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae-------------------------- 226 (531)
T COG3898 176 YAERAAEKAPQL---PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE-------------------------- 226 (531)
T ss_pred HHHHHHhhccCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH--------------------------
Confidence 999888866653 223444445455568899988877655432111000000
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
..+..+.....+-.-.-+-..++..-.+++| +
T Consensus 227 ----------------------------------------R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--------L 258 (531)
T COG3898 227 ----------------------------------------RSRAVLLTAKAMSLLDADPASARDDALEANK--------L 258 (531)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--------c
Confidence 0000000000000000111222333334444 5
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hhccChHHHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHV--FVKRLPEIHL 427 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~--~~p~~~~l~~ 427 (1167)
.|.-.-.-..-...+.+.|+..++-.++|.+-+..|| +++|.-|... +.|+. +..-++|+-++ ..|++.+..+
T Consensus 259 ~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a--r~gdt--a~dRlkRa~~L~slk~nnaes~~ 333 (531)
T COG3898 259 APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA--RSGDT--ALDRLKRAKKLESLKPNNAESSL 333 (531)
T ss_pred CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh--cCCCc--HHHHHHHHHHHHhcCccchHHHH
Confidence 5554444444555666788999999999999999876 8999988753 44543 44555555332 3377888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhh
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL-GNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~-g~~e~A~~~~~kAl~~~ 488 (1167)
..+......|++..|+.--+.+ .+..|. ..+++.+++++.-. |+-.+++..+-+++...
T Consensus 334 ~va~aAlda~e~~~ARa~Aeaa-~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 334 AVAEAALDAGEFSAARAKAEAA-AREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhccchHHHHHHHHHH-hhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 8888888899999999887776 666774 45778888988776 99999999999999865
|
|
| >KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.6e-05 Score=79.99 Aligned_cols=76 Identities=24% Similarity=0.206 Sum_probs=67.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|+-..++++-|.++|-+-|+|..|. +++.+.++.| ||||+|+++-++.-|++. ||..+.++.+.|.+..
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~--ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVG--IPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEe--CCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 48999999999999999999999999998864 5666667777 999999999999999998 8999999998887654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00022 Score=70.91 Aligned_cols=102 Identities=11% Similarity=-0.040 Sum_probs=91.1
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
..++..+.-+.++-..-. +|++++|.++|.-+...+|.+.+||+.++..+...+++++|+.+|..|..+.++++..-+
T Consensus 32 is~~~le~iY~~Ay~~y~--~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYN--QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred CCHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 445566776766665554 589999999999999999999999999999999999999999999999999989988888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
+-++.++ ..++.+.|+..|+-++.
T Consensus 110 ~agqC~l-~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQL-LMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHH-HhCCHHHHHHHHHHHHh
Confidence 8888888 78999999999999998
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00042 Score=77.89 Aligned_cols=180 Identities=16% Similarity=0.161 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 001064 307 EAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACA 385 (1167)
Q Consensus 307 ~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p 385 (1167)
+.+....+.......|+..+++.+|...|.++..- +.+--++. ....|..-+..+.+. ++++|+.+|++|+...-
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~---~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADC---YEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR 105 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH---HHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH
Confidence 33444445555677899999999999999998751 11112222 223455555555444 99999999999998732
Q ss_pred --CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc
Q 001064 386 --NY----PEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTET 453 (1167)
Q Consensus 386 --~~----~~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~ 453 (1167)
.. ..+...+|.+++.. |+++.|+..|++|++++.... ..++...+.++.+.|++++|..+|+++....
T Consensus 106 ~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred hcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 22 24788999999888 999999999999999885332 3566778999999999999999999974321
Q ss_pred -CCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 454 -SPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 454 -~P~-----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
... .-..++..+.+....|+.-.|...|++....+|.
T Consensus 186 l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 111 1234677777888899999999999999988764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.003 Score=69.10 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--ccChHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE---YWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIHLFA 429 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~---~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p~~~~l~~~~ 429 (1167)
..+..-+.-....|++++|+..|++++...|..+. +.+.++..+.+.+++++|+..+++.++.+| |+.+.++++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 33444455456789999999999999999998764 346777777889999999999999999994 2344566666
Q ss_pred HHHHHHcC---------------CH---HHHHHHHHHHhhhcCCChHHH-----------------HHHHHHHHHHcCCH
Q 001064 430 ARFKEQNG---------------DI---DGARAAYQLVHTETSPGLLEA-----------------IIKHANMERRLGNL 474 (1167)
Q Consensus 430 a~~~e~~g---------------~~---~~A~~~~~~a~~~~~P~~~~~-----------------~~~~a~~e~r~g~~ 474 (1167)
+......+ |. .+|...|++. ++..|+..-+ -+..+.++.+.|++
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH-HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 65432222 22 3566778886 6778875422 14556778899999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka 525 (1167)
..|+.-++.+++..|+. +..++.+..+...... .|..++|.++....
T Consensus 192 ~AA~~r~~~v~~~Yp~t---~~~~eal~~l~~ay~~-lg~~~~a~~~~~~l 238 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDT---QATRDALPLMENAYRQ-LQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHH-cCChHHHHHHHHHH
Confidence 99999999999998763 3445565555566444 89999998876543
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.6e-05 Score=80.02 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH-HHcCCHHHHHHHHHHHh
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~-e~~g~~~~A~~~~~~a~ 450 (1167)
+....|.|+....+.++.+|..|+.+..+.+.+.+..++|..+++.+ |.+.++|+..+.++ +..++++.+|.+|.+.
T Consensus 91 k~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g- 168 (435)
T COG5191 91 KKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKG- 168 (435)
T ss_pred eeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhh-
Confidence 56677888888889999999999999999999999999999999999 89999999966665 5689999999999998
Q ss_pred hhcCCChHHHHHHHHHHHH
Q 001064 451 TETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 451 ~~~~P~~~~~~~~~a~~e~ 469 (1167)
++++|+++.+|..|..+|.
T Consensus 169 lR~N~~~p~iw~eyfr~El 187 (435)
T COG5191 169 LRMNSRSPRIWIEYFRMEL 187 (435)
T ss_pred hccCCCCchHHHHHHHHHH
Confidence 8999999999998888764
|
|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.3e-05 Score=86.45 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=64.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
.+|||| +++|+.+|.++|+++|+|.+++| .++. | +-|||||.|.++.+|.+||.. |...+.|++|+|-+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rv-c~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRV-CRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEE-eecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 468998 89999999999999999999875 5555 5 899999999999999999988 78889999999977654
Q ss_pred C
Q 001064 1111 N 1111 (1167)
Q Consensus 1111 ~ 1111 (1167)
.
T Consensus 75 d 75 (369)
T KOG0123|consen 75 D 75 (369)
T ss_pred C
Confidence 3
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00067 Score=76.08 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=116.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC--CHH
Q 001064 363 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG--DID 440 (1167)
Q Consensus 363 ~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g--~~~ 440 (1167)
.+...|+++.|+.++.++ .+.+...-.+.++...++.+.|.+.++...+.. .+..-+.+..+-+....| ++.
T Consensus 111 i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID-EDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhCchhHH
Confidence 334568888888777664 556777778888889999999999999987654 444333333343444444 699
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH-HHHH
Q 001064 441 GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA-EKAR 519 (1167)
Q Consensus 441 ~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~-~~Ar 519 (1167)
+|..+|+.+ .+..+..+.++...+.+...+|++++|..++++|+..++ ..+.++.+++-+... .|+. +.+.
T Consensus 185 ~A~y~f~El-~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~------~~~d~LaNliv~~~~-~gk~~~~~~ 256 (290)
T PF04733_consen 185 DAFYIFEEL-SDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP------NDPDTLANLIVCSLH-LGKPTEAAE 256 (290)
T ss_dssp HHHHHHHHH-HCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C------CHHHHHHHHHHHHHH-TT-TCHHHH
T ss_pred HHHHHHHHH-HhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc------CCHHHHHHHHHHHHH-hCCChhHHH
Confidence 999999997 666777889999999999999999999999999998764 347787777776555 7766 7788
Q ss_pred HHHHHHHhhcCCCHHHH
Q 001064 520 QILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 520 ~i~~kal~~~p~~~~l~ 536 (1167)
+++.+....+|+.+-+-
T Consensus 257 ~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 257 RYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHHCHHHTTTSHHHH
T ss_pred HHHHHHHHhCCCChHHH
Confidence 88888888888876443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00033 Score=81.10 Aligned_cols=133 Identities=8% Similarity=0.049 Sum_probs=109.5
Q ss_pred CCCHHHHH--HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 94 SSDFSAWT--ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 94 P~d~~aw~--~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
|.....+. .|..++.. .++++.|+.+|+++.+.+|. .+..++.++...++-.+|++++.++|+..|.+.+++.
T Consensus 164 ~t~~~NyLv~~Ll~~l~~--t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~ 238 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSL--TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN 238 (395)
T ss_pred CCCcchHHHHHHHHHHhh--cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44444333 44555544 36889999999999999986 5777889988889999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 235 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p 235 (1167)
..++|++ ..++++.|..+.++++...|.+ ...|..++......++++.|.....-+=..+
T Consensus 239 ~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~---f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 239 LQAEFLL-SKKKYELALEIAKKAVELSPSE---FETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999 6789999999999999977765 6789999999999999999988887654443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0051 Score=61.57 Aligned_cols=145 Identities=17% Similarity=0.122 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 448 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 448 (1167)
|+++...-..+.+..-|. ..-.++++..+...|+..+|...|+.++.-.--.++.+.+.++......+++.+|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 444444333344433232 2346677777777888888888888877633356777888888888888888888888888
Q ss_pred HhhhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 449 VHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILV 523 (1167)
Q Consensus 449 a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ 523 (1167)
+ .+.+|. .++-.+.++..+..+|++..|+..|+.++...|+ +..-+.|+.|+.. +|+.++|+.-+.
T Consensus 150 l-~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-------~~ar~~Y~e~La~-qgr~~ea~aq~~ 217 (251)
T COG4700 150 L-MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-------PQARIYYAEMLAK-QGRLREANAQYV 217 (251)
T ss_pred H-hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-------HHHHHHHHHHHHH-hcchhHHHHHHH
Confidence 6 555654 3444566677777788888888888888887764 5566778888776 776666654443
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00043 Score=67.18 Aligned_cols=108 Identities=16% Similarity=0.355 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHh
Q 001064 116 VKIRRVYDAFLAEFP---LCYGYWKKYADHEARV----GSMDKVVEVYERAVQGVTYS---------VDIWLHYCIFAIN 179 (1167)
Q Consensus 116 ~~ar~~ye~~l~~~P---~~~~~W~~~a~~e~~~----~~~e~A~~l~eraL~~~P~s---------~~lw~~ya~~~~~ 179 (1167)
++.|+.|+..|..+. +-...|..|+.+.... +.-.....+++||+..+.++ +.+|+.|+.+.
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~-- 79 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS-- 79 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--
Confidence 456788888888877 6679999999998754 45677888999999877543 67788877752
Q ss_pred hcCCHHHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001064 180 TYGDPETIRRLFERGLA-YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 180 ~~~~~~~Ar~~feral~-~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l 232 (1167)
+.++.+|..+.. .+|.. ...+|..|+.++...+++++|..||+++|
T Consensus 80 -----~~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 -----SDPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----SHHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----cCHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 278899998886 35654 67999999999999999999999999875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.29 Score=60.35 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
+++.+|.+-.+++++.+|+...+-..-+-...++|..++|..+++ ++..-+.+.++-+..+++.....+..++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 678899999999999999988777777888889999999996555 4444444456667777766667889999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001064 193 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 229 (1167)
Q Consensus 193 ral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~ 229 (1167)
|++...|..-....+++.|++-..=..+-..+.++|.
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999777633344566666663332233344566665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0019 Score=68.72 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh---HHHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---EIHLFAA 430 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~---~l~~~~a 430 (1167)
+...+.-....|++.+|+..|++++...|.. +++++.++..+...|+++.|+..+++.+..+ |+++ .+++..+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHH
Confidence 4444555568899999999999999987754 4688888888889999999999999999999 5443 4555555
Q ss_pred HHHHH-----------cCCHHHHHHHHHHHhhhcCCChHHH-----------------HHHHHHHHHHcCCHHHHHHHHH
Q 001064 431 RFKEQ-----------NGDIDGARAAYQLVHTETSPGLLEA-----------------IIKHANMERRLGNLEDAFSLYE 482 (1167)
Q Consensus 431 ~~~e~-----------~g~~~~A~~~~~~a~~~~~P~~~~~-----------------~~~~a~~e~r~g~~e~A~~~~~ 482 (1167)
..... .+...+|+..|+.. ++..|++.-+ -+..+.++.+.|++..|..-|+
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l-i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEEL-IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHH-HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHH-HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44322 22345678888886 6678875422 1556778889999999999999
Q ss_pred HHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHH
Q 001064 483 QAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR 519 (1167)
Q Consensus 483 kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar 519 (1167)
.+|+..|+. ......+..++...++ .|..+.|.
T Consensus 166 ~v~~~yp~t---~~~~~al~~l~~~y~~-l~~~~~a~ 198 (203)
T PF13525_consen 166 YVIENYPDT---PAAEEALARLAEAYYK-LGLKQAAD 198 (203)
T ss_dssp HHHHHSTTS---HHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHCCCC---chHHHHHHHHHHHHHH-hCChHHHH
Confidence 999999763 3334455555555444 77666544
|
|
| >KOG4210 consensus Nuclear localization sequence binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.3e-05 Score=85.46 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=69.5
Q ss_pred ccEEE-EecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1031 VKSVY-VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~-V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++| |+|+++.+++++|+.+|..+|.|..+++ ..+..+|.++|||||+|.+......++......+.++.+.|++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~-~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRL-PTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeecc-CCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 35555 9999999999999999999999999775 335678999999999999999988888766778889999999887
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+++
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0039 Score=62.37 Aligned_cols=133 Identities=21% Similarity=0.264 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-cChHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK-RLPEIHLFAAR 431 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p-~~~~l~~~~a~ 431 (1167)
..+-..++.-+.+.|++.+|+..|++++.. ..+++.+.+.+++.....++..+|...+++..+.++. ..|.-++.+++
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 455666777777899999999999999986 6788889999999999999999999999999987732 47889999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+...|++..|+..|+.+ +...|+ +...+.|+.++.++|+.+++..-|....+..
T Consensus 169 ~laa~g~~a~Aesafe~a-~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 169 TLAAQGKYADAESAFEVA-ISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHhcCCchhHHHHHHHH-HHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 999999999999999998 676775 6778889999999999888887766555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=62.73 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 172 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ 172 (1167)
.+++++|++++++++..+|++...|..++.++.+.|++++|.+.|+++|+..|++.+.-..
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3688888888888888888888888888888888888888888888888888877665443
|
|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00026 Score=80.12 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=63.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
..|-+++||+.||++||.+||+-.-.|.. .|.+.....+++.|=|||.|++.+.++.||..+...|+.|-|.|..+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCccccc-ceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 67789999999999999999997754444 45444555677889999999999999999999888899888888643
|
|
| >KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=85.45 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecC--CCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR--KDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++..+.+||+||++.++++.|-..|+.||+|.+|+|+.... ...+.+.||||-|-+..++++|++. +|+.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999998865322 2345678999999999999999987 79999999999
Q ss_pred EEeccC
Q 001064 1105 IEERRP 1110 (1167)
Q Consensus 1105 V~~~r~ 1110 (1167)
+-+.+.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 988753
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.057 Score=56.86 Aligned_cols=202 Identities=18% Similarity=0.129 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHH-
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLI--ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR- 431 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~--~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~- 431 (1167)
.........+...+++..+...+..++. ..+.....+...+.+....+++..+...+..++... +.....+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD-PDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-CCcchHHHHHHHH
Confidence 4455666666788899999999999997 567778899999999988999999999999998865 444445555555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSP---GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P---~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
++...|+++.|...|+++ +...| .....+..........++++.++..+.+++...+.. ....+..++..+
T Consensus 139 ~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 212 (291)
T COG0457 139 ALYELGDYEEALELYEKA-LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLY 212 (291)
T ss_pred HHHHcCCHHHHHHHHHHH-HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHH
Confidence 788999999999999998 55777 355556666666677899999999999999988531 134556666665
Q ss_pred HHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 509 HLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
.. .++++.|...+.+++...|.....+..........+. .+.+...+.+++...+
T Consensus 213 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 213 LK-LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR---YEEALEALEKALELDP 267 (291)
T ss_pred HH-cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC---HHHHHHHHHHHHHhCc
Confidence 54 7889999999999999999844333322222222222 4556777777776654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=63.76 Aligned_cols=94 Identities=18% Similarity=0.072 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc---ChHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFA 429 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~---~~~l~~~~ 429 (1167)
+++..+..+...|+.++|+.+|++++..-... ...++.++..+...|+.++|..++++++..+ |+ +..+..++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence 45666777788999999999999999863322 4589999999999999999999999999887 66 77888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHh
Q 001064 430 ARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 430 a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
+..+...|+.++|...+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999998887763
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=78.29 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=59.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCC--ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhC-CCeeeCcEeEE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGR--IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS-PIQLAGRQVYI 1105 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~-~~~i~g~~l~V 1105 (1167)
...+|||||-|.+|++||.+.+...|- +.+++ ++.++..|++||||.|...+..++++.++.. ...|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmK-FFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMK-FFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhh-hhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 478999999999999999888876663 33333 3568889999999999999998888888874 67888887555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.049 Score=63.30 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=99.0
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhc----
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC----ANYPEYWIRYVLCMEASGSMDLAHNALARATHV-FVK---- 420 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~----p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~-~~p---- 420 (1167)
.......|..++....+.|.++.|...+.++.... ...+.+-+.++.++...|+..+|...++..+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 34456789999999999999999999999988753 225788999999999999999999999888871 111
Q ss_pred ----------------------------cChHHHHHHHHHHHHc------CCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001064 421 ----------------------------RLPEIHLFAARFKEQN------GDIDGARAAYQLVHTETSPGLLEAIIKHAN 466 (1167)
Q Consensus 421 ----------------------------~~~~l~~~~a~~~e~~------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 466 (1167)
...++++.++.+.... ++.+++...|..+ ++++|.....|..|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEA-TKLDPSWEKAWHSWAL 300 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-HHhChhHHHHHHHHHH
Confidence 1235777788888887 8899999999998 7899999999999998
Q ss_pred HHHHc
Q 001064 467 MERRL 471 (1167)
Q Consensus 467 ~e~r~ 471 (1167)
+..+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 87654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0015 Score=69.48 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH---HH
Q 001064 387 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE---AI 461 (1167)
Q Consensus 387 ~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~---~~ 461 (1167)
.++.++..|..+...|++++|+..|++++..+|. ..+.+.+..+..+...|+++.|+..|++. ++..|++.. ++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f-i~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF-IKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH-HHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCcchhhHH
Confidence 3567778888888899999999999999998842 34578888899999999999999999997 677888653 34
Q ss_pred HHHHHHH-----------HHcCCHHHHHHHHHHHHHhhhCCCccCc----hHHHH-------HHHHHHHHHHhCCHHHHH
Q 001064 462 IKHANME-----------RRLGNLEDAFSLYEQAIAIEKGKEHSQT----LPMLY-------AQYSRFLHLVSRNAEKAR 519 (1167)
Q Consensus 462 ~~~a~~e-----------~r~g~~e~A~~~~~kAl~~~~~~~~~~~----~~~l~-------~~~a~~~~~~~g~~~~Ar 519 (1167)
+..+... ...+...+|+..|+..+...|+...... +..+. ...++|.++ .|.+..|.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~ 161 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK-RGKYKAAI 161 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-HHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHH
Confidence 4333332 2234467899999999999986432211 01121 334777666 89999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 520 QILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 520 ~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.-|+..++..|++...-+.+..+...
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 99999999999998766655555433
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00054 Score=66.51 Aligned_cols=92 Identities=24% Similarity=0.383 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 352 TELENWHNYLDFIERD----GDFNKVVKLYERCLIACANYP---------EYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~----g~~~~a~~~yeral~~~p~~~---------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+.++.|..|+.|.++. +.......+++||+..+..++ .+|+.||.+.. .+..+|.-.....
T Consensus 20 DPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~ 93 (126)
T PF08311_consen 20 DPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKG 93 (126)
T ss_dssp -CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcC
Confidence 4588999999999765 456778899999999865432 48888887432 5666666554411
Q ss_pred -hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 419 -VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 419 -~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
-.+.+.+|..||.+++..|++++|.++|++.
T Consensus 94 IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 94 IGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 1456777777888888888888887777764
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.12 Score=61.32 Aligned_cols=196 Identities=17% Similarity=0.246 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
...|...++|+.|.+.|.++ +....-|+.|-+.|+++.|.++-++|... -....+++.-+.-+
T Consensus 772 adhyan~~dfe~ae~lf~e~----------------~~~~dai~my~k~~kw~da~kla~e~~~~-e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEA----------------DLFKDAIDMYGKAGKWEDAFKLAEECHGP-EATISLYIAKAEDL 834 (1636)
T ss_pred HHHhccchhHHHHHHHHHhc----------------chhHHHHHHHhccccHHHHHHHHHHhcCc-hhHHHHHHHhHHhH
Confidence 44566667777766666543 34556677777888888888888877644 22234667777777
Q ss_pred HHcCCHHHHHHHH------HHHHHhhh----------------c-cChHHHHHHHHHHHHcCCHHHHHHHHHHHh-----
Q 001064 399 EASGSMDLAHNAL------ARATHVFV----------------K-RLPEIHLFAARFKEQNGDIDGARAAYQLVH----- 450 (1167)
Q Consensus 399 ~~~g~~e~A~~vl------~rA~~~~~----------------p-~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~----- 450 (1167)
+.+|++.+|..+| .+||+.+. + ...+.+..++.-++..|++.+|...|-++.
T Consensus 835 dehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaa 914 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAA 914 (1636)
T ss_pred HhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHH
Confidence 7777776655443 22232221 1 122445556666777788877766554320
Q ss_pred ------hhcCC-----------ChHH--HHHHHH---------HHHHHcCCHHHHHHH------HHHHHHhhhCCCccCc
Q 001064 451 ------TETSP-----------GLLE--AIIKHA---------NMERRLGNLEDAFSL------YEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 451 ------~~~~P-----------~~~~--~~~~~a---------~~e~r~g~~e~A~~~------~~kAl~~~~~~~~~~~ 496 (1167)
.++.. .+.. +.+.|+ .++.++|-++.++.. |+-|+.+..-.. ...
T Consensus 915 vnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~-k~k 993 (1636)
T KOG3616|consen 915 VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA-KDK 993 (1636)
T ss_pred HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh-hcc
Confidence 00000 0110 111111 233333433333321 222222211000 012
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
.+++++.|+.|+.. .|++++|-+-|-.|++++.-+.
T Consensus 994 ~~~vhlk~a~~led-egk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 994 MGEVHLKLAMFLED-EGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred CccchhHHhhhhhh-ccchhhhhHhhHHHhhcccccc
Confidence 35688899999887 9999999999999999775543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0023 Score=61.40 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC---CHHHHH
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTY---SVDIWL 171 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~---s~~lw~ 171 (1167)
.+++.++..+..+ |+.++|..+|+++++.-... .+.++.++..+...|++++|..++++++..+|. +..++.
T Consensus 2 ~~~~~~A~a~d~~--G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSL--GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 3567777777764 78889999999999875444 578888899999999999999999999988887 788888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
.++-.+. ..|+.++|...+-.++.
T Consensus 80 f~Al~L~-~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALY-NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 8877666 67888888888877775
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00013 Score=56.50 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..|..++..+...|++++|+++|+++|+.+|++.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 568888888888888888888888888888888888887764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.016 Score=61.17 Aligned_cols=196 Identities=18% Similarity=0.159 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH-HHH
Q 001064 321 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL-CME 399 (1167)
Q Consensus 321 ~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~-~l~ 399 (1167)
.+...+.+..++..+...+.. ...+.....|...+.+....+++..++..+.+++...+.....+..... ++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 68 ALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 445555666666666666531 1234445678888888888889999999999999987776555555555 677
Q ss_pred HcCCHHHHHHHHHHHHHhhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHHHHcCCHH
Q 001064 400 ASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANMERRLGNLE 475 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e~r~g~~e 475 (1167)
..|+++.|...|.+++... + ................++++.+...+.++ ....+. ....+...+..+...++++
T Consensus 142 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 142 ELGDYEEALELYEKALELD-PELNELAEALLALGALLEALGRYEEALELLEKA-LKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HcCCHHHHHHHHHHHHhcC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH-HhhCcccchHHHHHhhHHHHHcccHH
Confidence 8999999999999998743 4 34455555556667789999999999998 677887 6888888999999999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 476 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 476 ~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
.+...+.+++...+. ....+...+..+. ..+.++++...+.++++..|.
T Consensus 220 ~a~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPD------NAEALYNLALLLL-ELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcc------cHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCcc
Confidence 999999999998853 1234555555555 478899999999999999987
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0043 Score=67.88 Aligned_cols=156 Identities=13% Similarity=0.031 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH---H
Q 001064 387 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI---HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE---A 460 (1167)
Q Consensus 387 ~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l---~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~---~ 460 (1167)
.++.++..+.-+...|++++|+..|++++..+ |..+.. .+.++..+.+.+++++|+..|++. +++.|++.. +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f-i~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF-IRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCcCCCchHHH
Confidence 45667777777778899999999999999988 555443 467788888999999999999997 788888764 4
Q ss_pred HHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhhhCCCccCch----HHH-------HHHHHHHHHHH
Q 001064 461 IIKHANMERRLG---------------N---LEDAFSLYEQAIAIEKGKEHSQTL----PML-------YAQYSRFLHLV 511 (1167)
Q Consensus 461 ~~~~a~~e~r~g---------------~---~e~A~~~~~kAl~~~~~~~~~~~~----~~l-------~~~~a~~~~~~ 511 (1167)
++..+.....++ | ..+|+..|++.+...|+..-.+.- ..+ -...++|.++
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~- 187 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK- 187 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 555554432222 1 356789999999999864321110 011 1344777666
Q ss_pred hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 512 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 512 ~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.|.+..|..-|+..++..|+++..-+.+..+...
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 8999999999999999999998766666555443
|
|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00028 Score=79.90 Aligned_cols=75 Identities=25% Similarity=0.266 Sum_probs=64.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
...-|-+++|||++|+++|.++|+.|+ |.++ +..+.+|+..|-|||+|.+.+++++|++.+...++.|-|.|-.+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~---~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENL---EIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEE---EEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 457788899999999999999999996 6653 33566789999999999999999999999888888888988654
|
|
| >KOG1855 consensus Predicted RNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00034 Score=77.53 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=53.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeee----cCCCccc--------ccEEEEEECCHHHHHHHHHhC
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR----NRKDVVG--------VCYAFVEFEDISGVQNAIQAS 1094 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~~~g~~--------kg~afV~F~~~~~a~~Al~~~ 1094 (1167)
+-++++|.+-|||.+-.-+.|.++|+.||.|+.|+|.-. ....|.. +-||||+|+..+.|.+|.+.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 347899999999999999999999999999999876221 1112222 458999999999999998874
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00054 Score=59.58 Aligned_cols=66 Identities=23% Similarity=0.397 Sum_probs=44.9
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH
Q 001064 364 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430 (1167)
Q Consensus 364 ~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a 430 (1167)
+.+.+++++|+.++++++..+|.++.+|..+|.++...|++++|+..|+++++.. |+.+......+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~~a 70 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS-PDDPDARALRA 70 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC-CCcHHHHHHHH
Confidence 3456677777777777777777777777777777777777777777777777665 55555544433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0077 Score=61.73 Aligned_cols=214 Identities=14% Similarity=0.143 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHH
Q 001064 312 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 391 (1167)
Q Consensus 312 ~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w 391 (1167)
..++-.|+.+|...+-..-|+..|..++. +.|+..+++..++-++...|+++.|...|.-.++.+|.+.-..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLa--------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALA--------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhh--------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence 34555567778888888888888988887 7888788877777888888999999999999999999888777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh--HHHHHHHHHHHHcCCHHHHHHHHH-HHhhhcCCChHHHHHHHHHHH
Q 001064 392 IRYVLCMEASGSMDLAHNALARATHVFVKRLP--EIHLFAARFKEQNGDIDGARAAYQ-LVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 392 ~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~--~l~~~~a~~~e~~g~~~~A~~~~~-~a~~~~~P~~~~~~~~~a~~e 468 (1167)
.+-+..+.--|++.-|..-+..--+.. |++| .+|+. +-++.-+..+|+.-+. |+ ..++ -+-| .|....
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~-~~~d---~e~W-G~~iV~ 207 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLY---LNEQKLDPKQAKTNLKQRA-EKSD---KEQW-GWNIVE 207 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHH---HHHhhCCHHHHHHHHHHHH-Hhcc---Hhhh-hHHHHH
Confidence 776665555678887776665555443 4444 34443 4456667777776544 43 3322 2233 222233
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 469 RRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.-+|++.+ ..+++++.+...++.. ...+-+.|..++.... ..|++++|..+|+-|+..+-.+-.-+ .|+.||+.
T Consensus 208 ~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l-~~G~~~~A~~LfKLaiannVynfVE~-RyA~~EL~ 282 (297)
T COG4785 208 FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYL-SLGDLDEATALFKLAVANNVYNFVEH-RYALLELS 282 (297)
T ss_pred HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 33555432 4456666554432211 1122334566666644 49999999999999986543222212 56666654
|
|
| >KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00015 Score=83.40 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=61.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
..++|+|-|||..|+.++|+.+|+.||+|+.|+. +-..+|..||+|-|..+|+.|+++ ++..|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE------TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4589999999999999999999999999998542 234578999999999999999988 89999999888
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0019 Score=72.59 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANY--------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~--------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+++-..|......|++|+.+++.+-...+.. ...+++++.++.+.+.+.+|+....+++.+. |++....+.
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyR 296 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYR 296 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHH
Confidence 3333444444445555555555433222211 1267888888999999999999999999977 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhh
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL-EDAFSLYEQAIAIEK 489 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~-e~A~~~~~kAl~~~~ 489 (1167)
.++.+...|+++.|+..|+++ +++.|+|-.+...++.+-.+...+ ++.+++|.+.+....
T Consensus 297 rG~A~l~~~e~~~A~~df~ka-~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKA-LKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999998 899999988877777665555443 445777887777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.18 Score=56.45 Aligned_cols=247 Identities=17% Similarity=0.073 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 402 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g 402 (1167)
.++++.++..||-.+. ||. .+.+--.|+.- .+.|+.+-++..-+++-..-|+-+-.|.....-....|
T Consensus 133 eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleA-qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 133 EGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEA-QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred cCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHH-HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 4677778888887764 222 12222233333 46688888888888888877777777777776666778
Q ss_pred CHHHHHHHHHHHHHhh--hcc---ChHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001064 403 SMDLAHNALARATHVF--VKR---LPEIHLFAARFK-EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476 (1167)
Q Consensus 403 ~~e~A~~vl~rA~~~~--~p~---~~~l~~~~a~~~-e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 476 (1167)
+.+.|+++++...... .++ ....-++-+... ...-+...|+..-..+ +++.|+..-.-+.-+..+.+.|++.+
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a-~KL~pdlvPaav~AAralf~d~~~rK 281 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA-NKLAPDLVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-hhcCCccchHHHHHHHHHHhccchhh
Confidence 8888887776554422 121 111222222222 2234566677666666 67788877776667777777888888
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHH
Q 001064 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI-LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFL 555 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i-~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~a 555 (1167)
+-.+++.+.+.+|. |.|+..|.+. + .|+.-..|-- .++.-.+.|++..-....+.--+..++ ...+
T Consensus 282 g~~ilE~aWK~ePH-------P~ia~lY~~a--r-~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e---~~~A 348 (531)
T COG3898 282 GSKILETAWKAEPH-------PDIALLYVRA--R-SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE---FSAA 348 (531)
T ss_pred hhhHHHHHHhcCCC-------hHHHHHHHHh--c-CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc---hHHH
Confidence 88888888887753 5666655443 2 4543332211 122223456666544444333333332 2334
Q ss_pred HHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Q 001064 556 EQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLF-GDAQLIKKAEDRH 605 (1167)
Q Consensus 556 r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~-Gd~~~~~~v~~r~ 605 (1167)
|.--|.+....+ ++.++....+.|+-. ||...++....+.
T Consensus 349 Ra~Aeaa~r~~p----------res~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 349 RAKAEAAAREAP----------RESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhhhCc----------hhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 444343333222 334666666666555 7777666555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0031 Score=62.88 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=90.6
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+....++.-..++--.-..|+++.|..+|.-....++.+++.|+.+|.++...+.++.|+..|..|..+. +++|...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccch
Confidence 4555566666666555678999999999999999999999999999999999999999999999998866 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
.+.++...|+.+.|+..|+.+ ++ .|.+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a-~~-~~~~~~ 139 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELV-NE-RTEDES 139 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHH-Hh-CcchHH
Confidence 999999999999999999987 44 555443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.31 Score=65.99 Aligned_cols=211 Identities=13% Similarity=0.182 Sum_probs=131.1
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc--------
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-------- 421 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-------- 421 (1167)
+..-.+.|..++.+..+.|.+++|....-.|.... -+++.+..|.++...|+...|+.+++..++.+.++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 44446789999999999999999998888888774 67899999999999999999999999999766544
Q ss_pred --------ChHHHHHHHHHHHHcCCHH--HHHHHHHHHhhhcCCChHHHHHHHH----HHH--------HHcCCHHH---
Q 001064 422 --------LPEIHLFAARFKEQNGDID--GARAAYQLVHTETSPGLLEAIIKHA----NME--------RRLGNLED--- 476 (1167)
Q Consensus 422 --------~~~l~~~~a~~~e~~g~~~--~A~~~~~~a~~~~~P~~~~~~~~~a----~~e--------~r~g~~e~--- 476 (1167)
.....+..+.+.+..++++ ..++.|..+ .++.|...+-++..+ .++ ++.|++..
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~-~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~ 1822 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA-KAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK 1822 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH-HHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH
Confidence 1234555667777777743 356777777 677774332222222 221 23345555
Q ss_pred HHHHHHHHHHhhhCCC--ccCchHHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 477 AFSLYEQAIAIEKGKE--HSQTLPMLYAQYSRFLHL---------VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~--~~~~~~~l~~~~a~~~~~---------~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
+.-.|.+++....... ..|.+-.+|..++...+. ..++.+.--+..+.++++.|. ..++-.|..+..+
T Consensus 1823 ~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~-Y~f~ta~sQLlSR 1901 (2382)
T KOG0890|consen 1823 AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPT-YQFYTAYSQLLSR 1901 (2382)
T ss_pred HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHH
Confidence 3444457776543211 122233456554222111 123445555666777777774 3455688888776
Q ss_pred CCChh-H-HHHHHHHHHHHhh
Q 001064 546 QSSPK-Q-IDFLEQLVDKFLM 564 (1167)
Q Consensus 546 ~~~~~-~-~~~ar~l~eral~ 564 (1167)
.-.+. + ...+.++..+.+.
T Consensus 1902 icH~~~dV~~vl~~II~~l~~ 1922 (2382)
T KOG0890|consen 1902 ICHPNQDVARVLKHIIAKLVL 1922 (2382)
T ss_pred HcCCchHHHHHHHHHHHHHHH
Confidence 53322 2 2445555544433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.3 Score=52.63 Aligned_cols=82 Identities=12% Similarity=-0.115 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
.+++.+++++....+..|.+-.....++-.+....++..|-.+|++.-..+|.-...-+.+++-+. ..+.+..|.++..
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY-~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY-KACIYADALRVAF 102 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhcccHHHHHHHH
Confidence 478889999999999999888888888888999999999999999999999988888888888777 5677777776655
Q ss_pred HHH
Q 001064 193 RGL 195 (1167)
Q Consensus 193 ral 195 (1167)
...
T Consensus 103 ~~~ 105 (459)
T KOG4340|consen 103 LLL 105 (459)
T ss_pred Hhc
Confidence 443
|
|
| >PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00051 Score=67.12 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=72.5
Q ss_pred cchhHhHHHHHHHHhhh-----cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCC-CcceeEeeeeccccCC
Q 001064 718 PAQVGSYFVGQYYQVLQ-----QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN-FTAIEIKTINSLGSWN 791 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~-----~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~-~~~~~i~~~d~q~~~~ 791 (1167)
+.++...||+.||..|+ +....|..||..++.++ |+|+.+.+. ....+++.+.+ .+.++++++||+..++
T Consensus 3 ~tq~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II-~Ng~Pi~~~---~~F~~~w~~~pv~TqH~L~s~D~H~IPG 78 (166)
T PF10429_consen 3 QTQIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKII-WNGTPIAQP---TAFQQTWQQQPVQTQHQLTSFDCHVIPG 78 (166)
T ss_dssp CCCCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEE-ETTEEES-H---HHHHHHHHCCS--EEEEEEEEEEEEETT
T ss_pred cchhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEE-ECCccCCCH---HHHHHHHHhCccceeeeeeeeeeeEeCC
Confidence 56788899999999999 33556888998876555 899987655 34677889999 6789999999999875
Q ss_pred -CceEEEEEEEEEecCccccceeEEEEEEeee
Q 001064 792 -GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 822 (1167)
Q Consensus 792 -~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~ 822 (1167)
|+++|.|+|.|..++. -+-+--|...|...
T Consensus 79 sgt~i~N~n~KVRFDEs-Grdk~G~~a~l~~~ 109 (166)
T PF10429_consen 79 SGTFIINVNCKVRFDES-GRDKLGEDADLPQP 109 (166)
T ss_dssp TTEEEEEEEEEEEEB-S-SB-TTS-B--TTS-
T ss_pred CCeEEEeeeEEEEecCC-CCCCCCCceeeccc
Confidence 4577789999999876 35566677776543
|
Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B. |
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00011 Score=84.18 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=74.4
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1026 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1026 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
..|.+.+++|+--|.-.++..+|.++|+.+|.|.+|.| |.++.++++||.+||+|.|.+++..||..+|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVri-I~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRI-IGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEe-eccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 45667799999999999999999999999999999986 77888999999999999999999999999999999999999
Q ss_pred Ee
Q 001064 1106 EE 1107 (1167)
Q Consensus 1106 ~~ 1107 (1167)
..
T Consensus 253 q~ 254 (549)
T KOG0147|consen 253 QL 254 (549)
T ss_pred cc
Confidence 64
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.27 Score=58.57 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
.+++++|.. |-.-++.-|+....|+.++++....|+.--|..+|
T Consensus 457 ~~df~ra~a-fles~~~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 457 DGDFDRATA-FLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred cCchHHHHH-HHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 367777754 44456778999999999999999988886665555
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0042 Score=71.56 Aligned_cols=69 Identities=12% Similarity=-0.044 Sum_probs=65.7
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGY---WKKYADHEARVGSMDKVVEVYERAVQG 162 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~---W~~~a~~e~~~~~~e~A~~l~eraL~~ 162 (1167)
.+|.+.++|+.|+..+.++ +++++|...|+++|+++|++..+ |+.++..+..+|++++|+..|+++|..
T Consensus 70 ~dP~~a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6999999999999999985 89999999999999999999865 999999999999999999999999997
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.03 Score=64.02 Aligned_cols=177 Identities=16% Similarity=0.081 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhhccChHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIA----CANYPEYWIRYVLCMEA---SGSMDLAHNALARATHVFVKRLPEIH 426 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~----~p~~~~~w~~ya~~l~~---~g~~e~A~~vl~rA~~~~~p~~~~l~ 426 (1167)
.++-+.++--+....+++..+.+.+..-.. .+....+-+.||..|.+ .|+.++|+.++..++.......++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 456667666677888999999999887665 35567789999999988 89999999999997766656788888
Q ss_pred HHHHHHHHH---------cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHhhhCCCc
Q 001064 427 LFAARFKEQ---------NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE----DAFSLYEQAIAIEKGKEH 493 (1167)
Q Consensus 427 ~~~a~~~e~---------~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e----~A~~~~~kAl~~~~~~~~ 493 (1167)
-..++++.. ...+++|...|.++ -+++|+... =++++.++...|... +.+.+--+.-...-.+..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg-Fe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKG-FEIEPDYYS-GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHH-HcCCccccc-hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888876632 12478899999998 466765432 244555555555422 222222111111101100
Q ss_pred cCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 494 SQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 494 ~~~~~~l~--~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
.......| ..++..... .|++++|...+++++++.|...
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCcch
Confidence 11112234 445555444 8999999999999999876543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=64.40 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPE-----YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI 439 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~-----~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~ 439 (1167)
-++|++++|..-|.+||..||..+. ++..-|.++.+++..+.|++-..+||++. |.+.......|.++++..++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhH
Confidence 4678888888888898888887654 33444444555555666666666666655 44455555555555555556
Q ss_pred HHHHHHHHHHhhhcCCChH
Q 001064 440 DGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 440 ~~A~~~~~~a~~~~~P~~~ 458 (1167)
++|+.-|.++ ++++|..-
T Consensus 185 eealeDyKki-~E~dPs~~ 202 (271)
T KOG4234|consen 185 EEALEDYKKI-LESDPSRR 202 (271)
T ss_pred HHHHHHHHHH-HHhCcchH
Confidence 6666666655 45555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0035 Score=63.36 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=82.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhccCh----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVKRLP----EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p~~~----~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
+.-+...|++++|..-|.+|+.++++-.. -++...|..+.+++..+.|+.-+.++ ++++|.+..++.+++.++.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa-iel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKA-IELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh-HhcCchhHHHHHHHHHHHHh
Confidence 33455689999999999999999964332 35556788888999999999999998 89999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhC
Q 001064 471 LGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 471 ~g~~e~A~~~~~kAl~~~~~ 490 (1167)
+.++++|+.-|++.++.+|.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999874
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0038 Score=62.80 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS--- 148 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~--------~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~--- 148 (1167)
+.+.+.++..+..||.|.++++..+..+..+. ..-+++|+.-|+.+|.++|+..++...++..+..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 45677777888888888888886666554431 1355677777888888888877777777776654431
Q ss_pred --------HHHHHHHHHHHHhccCCC
Q 001064 149 --------MDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 149 --------~e~A~~l~eraL~~~P~s 166 (1167)
|++|.+.|++|+...|.+
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444555555555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0042 Score=59.44 Aligned_cols=113 Identities=23% Similarity=0.266 Sum_probs=82.1
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCC-cccchhchHHHHHHHhcCCC---ccee-EeeeeccccCC-CceE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGD-STESASSMLDIHSLVISLNF---TAIE-IKTINSLGSWN-GGVL 795 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~-~~~~~~~~~~i~~~~~~l~~---~~~~-i~~~d~q~~~~-~~i~ 795 (1167)
..|+.+||..|+ ++++.|..||.+.+.+....+. ......+.++|.+.+..+.. ..++ +.+++++...+ ...+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 7899999999998766543321 01223455567778877763 2333 47888777543 3466
Q ss_pred EEEEEEEEecC--ccccceeEEEEEEeeeCCeEEEEcceEEe
Q 001064 796 VMVSGSVKTKE--FCRRRKFVQTFFLAPQEKGYFVLNDIFHF 835 (1167)
Q Consensus 796 v~v~G~~~~~~--~~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 835 (1167)
+.+.+.+...+ ....+.|.++|.+...+++|.|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence 67778887765 24567899999999999999999999876
|
This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0011 Score=51.43 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 396 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~ 396 (1167)
+.|..++..+...|++++|+.+|++++..+|+++++|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457777777778888888888888888888888888877764
|
|
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0049 Score=59.13 Aligned_cols=91 Identities=22% Similarity=0.362 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 352 TELENWHNYLDFIERD----GDFNKVVKLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~----g~~~~a~~~yeral~~~p---------~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+-++.|..|+.|.+.. +.-.....+++||+...- .+..+|+.|+.+. ++ .+++|.-....-
T Consensus 20 DPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~~ 93 (125)
T smart00777 20 DPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSKG 93 (125)
T ss_pred CChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCC
Confidence 3478899999998753 344567889999998743 2335888888753 23 334443332210
Q ss_pred -hccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 419 -VKRLPEIHLFAARFKEQNGDIDGARAAYQL 448 (1167)
Q Consensus 419 -~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 448 (1167)
-.....+|..||.+++..|++.+|.++|+.
T Consensus 94 IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 94 IGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 024566777777777777777777777753
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.07 E-value=1.4 Score=54.56 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=134.7
Q ss_pred HhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHH
Q 001064 145 RVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRV 224 (1167)
Q Consensus 145 ~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A 224 (1167)
..+++.+|.....+.|+.+|+..-.-..-+-... +.|+.++|..++|-.-. .+.+ +...-..+..++..+++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~-~~~~--D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYG-LKGT--DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhcc-CCCC--chHHHHHHHHHHHHHhhhhHH
Confidence 4478999999999999999987543333333333 67999999966664333 3333 566677777788889999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccC
Q 001064 225 AMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 304 (1167)
Q Consensus 225 ~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~ 304 (1167)
..+|+|++...|. .+-++..|..+...
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~---------------------------------------------------- 123 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVRE---------------------------------------------------- 123 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHH----------------------------------------------------
Confidence 9999999998776 55555555544222
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCC---------hHHHHH
Q 001064 305 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD---------FNKVVK 375 (1167)
Q Consensus 305 ~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~---------~~~a~~ 375 (1167)
..|+++. ..+++.|...=+|+|+ .|.-.--....... ..-|..
T Consensus 124 ---------------~~yk~qQ--kaa~~LyK~~pk~~yy-----------fWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 124 ---------------KSYKKQQ--KAALQLYKNFPKRAYY-----------FWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred ---------------HHHHHHH--HHHHHHHHhCCcccch-----------HHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 1121111 1123333332232221 23222111111000 112344
Q ss_pred HHHHHHHhc-C--CCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001064 376 LYERCLIAC-A--NYPEYWIRYVLCMEASGSMDLAHNALAR-ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 451 (1167)
Q Consensus 376 ~yeral~~~-p--~~~~~w~~ya~~l~~~g~~e~A~~vl~r-A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 451 (1167)
..++.+... + ...++. -|..+++.+|++++|..++.. ..+...+-+..+-....+++...+++.+-..+..++ +
T Consensus 176 m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L-l 253 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL-L 253 (932)
T ss_pred HHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH-H
Confidence 445544443 1 112333 334457778899999998843 333443445555566778888889999988888887 5
Q ss_pred hcCCChHH
Q 001064 452 ETSPGLLE 459 (1167)
Q Consensus 452 ~~~P~~~~ 459 (1167)
...+++..
T Consensus 254 ~k~~Ddy~ 261 (932)
T KOG2053|consen 254 EKGNDDYK 261 (932)
T ss_pred HhCCcchH
Confidence 66777633
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.17 Score=54.14 Aligned_cols=184 Identities=15% Similarity=0.111 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhcCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHH
Q 001064 352 TELENWHNYLDFIERDGDFN-KVVKLYERCLIACANYPEYWIRYV-LCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 429 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~g~~~-~a~~~yeral~~~p~~~~~w~~ya-~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~ 429 (1167)
..+...+.+..+++..++.+ ..-.++|..+........+|.-.+ .++...+++++|.+.+.+.. ..++..+-
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~ 143 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALN 143 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHH
Confidence 34566777777766555444 345567776666555555666554 56667899999998887733 23456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001064 430 ARFKEQNGDIDGARAAYQLVHTETSPGLLE--AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 507 (1167)
Q Consensus 430 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~--~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~ 507 (1167)
..++.+..+++-|++.+++. .+++-+..- +-..|+.+.-.-+.+..|.-+|+...+..+. .|.+....+-+
T Consensus 144 VqI~lk~~r~d~A~~~lk~m-q~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~------T~~llnG~Av~ 216 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKM-QQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP------TPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC------ChHHHccHHHH
Confidence 67777888889999998887 555544221 1122333333345688999999988774432 26677777766
Q ss_pred HHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 508 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 508 ~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
... .|++++|..+++.||..+++++..+.+++-.-...|.+
T Consensus 217 ~l~-~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 217 HLQ-LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHH-hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 554 99999999999999999999999988888777766654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0036 Score=72.13 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=66.1
Q ss_pred CCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 348 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---WIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 348 pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~---w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+.+|+....|.+++..+...|++++|+.+|+++|..+|++.+. |++.+.+|..+|+.++|+..|++|+++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3578889999999999999999999999999999999999965 9999999999999999999999999863
|
|
| >PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0043 Score=56.51 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=59.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhc--CCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee----CcEeE
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQN--FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA----GRQVY 1104 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~----g~~l~ 1104 (1167)
++|.|+|||...|.++|.+++.. .|..-.+-+.+ |-.++.+.|||||.|.+++.+.+-.+. +|..+. .+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPi-Df~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPI-DFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeee-eccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999999999999998864 34544443333 556778899999999999999988877 676664 34567
Q ss_pred EEeccC
Q 001064 1105 IEERRP 1110 (1167)
Q Consensus 1105 V~~~r~ 1110 (1167)
|.+++-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 777664
|
It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO). |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0078 Score=64.85 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=70.6
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 509 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~ 509 (1167)
+.+.|++.+|...|..- +...|+.. .+++=+++....+|++++|..+|..+++..|. ++.-|+.+++++..+.
T Consensus 151 ~~ksgdy~~A~~~F~~f-i~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~---s~KApdallKlg~~~~ 226 (262)
T COG1729 151 LYKSGDYAEAEQAFQAF-IKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK---SPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHcCCHHHHHHHHHHH-HHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC---CCCChHHHHHHHHHHH
Confidence 34667788888777774 56666643 22333445566788888888888888887764 3555778888888877
Q ss_pred HHhCCHHHHHHHHHHHHhhcCCCHHHH
Q 001064 510 LVSRNAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 510 ~~~g~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
+ +|+.++|+.+|++.++.+|+...-.
T Consensus 227 ~-l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 227 R-LGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred H-hcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 6 8888888888888888888776443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0094 Score=56.15 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=48.5
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+.+.|+++.|++.|.++ +.+.|..+.+|..++..++-+|+-++|..-+++|+++..++ ..+.-..+.+-+-++ +..
T Consensus 53 laE~g~Ld~AlE~F~qa-l~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~ly-Rl~ 128 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQA-LCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLY-RLL 128 (175)
T ss_pred HHhccchHHHHHHHHHH-HHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHH-HHh
Confidence 33455555666666555 45555555666666655555566666666666666554322 111223344444442 235
Q ss_pred CCHHHHHHHHHHHHhh
Q 001064 513 RNAEKARQILVDSLDH 528 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~ 528 (1167)
|+.+.||.-|+.|-++
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 6666666666655443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.022 Score=65.85 Aligned_cols=167 Identities=12% Similarity=0.037 Sum_probs=113.8
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---------c---------------
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---------R--------------- 421 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p---------~--------------- 421 (1167)
+..+..+-+++-.+||..+|+..++|+-++. +......++..+|++|++.-.. .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 3456778888999999999999999988774 3345577888888888764320 0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001064 422 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 499 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~ 499 (1167)
..-+...+|....+.|+.++|.+.|..+ ++.+|. +..+...++..+..++.+.++..++.+.=++. -+....
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdL-lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-----lpkSAt 331 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDL-LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-----LPKSAT 331 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHH-HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-----CCchHH
Confidence 1223334688889999999999999998 444454 56688888888899999999999998853221 111122
Q ss_pred HHHHHHHHHHHHhCC---------------HHHHHHHHHHHHhhcCCCHHHHHHHH
Q 001064 500 LYAQYSRFLHLVSRN---------------AEKARQILVDSLDHVQLSKPLLEALI 540 (1167)
Q Consensus 500 l~~~~a~~~~~~~g~---------------~~~Ar~i~~kal~~~p~~~~l~~~~~ 540 (1167)
+...-+-+..+..++ ...|.+.+.+|++.+|+-+.++....
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K 387 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMK 387 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccC
Confidence 211112222222332 13567889999999999887775433
|
The molecular function of this protein is uncertain. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.11 Score=55.43 Aligned_cols=200 Identities=16% Similarity=0.085 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHN-ALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~-vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
....++.+++..++.++-.. +++.........+.-.++..+.++...|++++|.++..+. .+.++.-.-+.+.
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~ 147 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQIL 147 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHH
Confidence 45566777766665555443 3444443332233445566788889999999999987663 3566776777888
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCC
Q 001064 469 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 548 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~ 548 (1167)
.++.++|-|+..+++..+.+.+ .++-.+...|..+.-- .+.+.+|.-||+..-+..+-.+.+....+-..+.+++
T Consensus 148 lk~~r~d~A~~~lk~mq~ided----~tLtQLA~awv~la~g-gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDED----ATLTQLAQAWVKLATG-GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchH----HHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 8899999999999999888732 1222233334433222 4479999999999999888788888877777777776
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhhhCCC
Q 001064 549 PKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 549 ~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G-d~~~~~~v~~r~~~~~~~~ 612 (1167)
++.+..+++.+|......+ +.+-..+-.-...| |.+...+....+....|++
T Consensus 223 ---~eeAe~lL~eaL~kd~~dp---------etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 223 ---YEEAESLLEEALDKDAKDP---------ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred ---HHHHHHHHHHHHhccCCCH---------HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 6778999999999876665 46777777777788 7788888887777777765
|
|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0013 Score=68.51 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=59.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
..+.++|.|++..+.+.+|.++|.++|.+....+ ..+++||+|++.+++..|+.. ++..+.|+.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh---------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3589999999999999999999999999954321 357999999999999999988 799999999999
|
|
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00064 Score=79.22 Aligned_cols=80 Identities=23% Similarity=0.361 Sum_probs=72.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
...+|||++||...++..++++...||.++.... +.+..+|.++||+|.+|.+......|+.. ||..++++.|.|..+
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l-v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL-VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhhee-ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4589999999999999999999999999998764 77888899999999999999999999988 899999999999766
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
-.
T Consensus 367 ~~ 368 (500)
T KOG0120|consen 367 IV 368 (500)
T ss_pred hc
Confidence 43
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.17 Score=53.23 Aligned_cols=205 Identities=15% Similarity=0.071 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-------GSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~-------g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
.+.+-.-.+...++++++...++++....-++ ..|+..+..++.. ..+.++..+|++|+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnn-rslfhAAKayEqaamLake~~klsEvvdl~eKAs------------- 98 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENN-RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------- 98 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence 33333444445567777777777777663333 2344444444322 12223333333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
.++.++|..+-|-..++++. .+ ...-+.++|+.+|.+++......+...--.+++-+.++++
T Consensus 99 --~lY~E~GspdtAAmaleKAa---------------k~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 99 --ELYVECGSPDTAAMALEKAA---------------KA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred --HHHHHhCCcchHHHHHHHHH---------------HH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 33445666666666666652 12 1345678899999999887754322111234666777777
Q ss_pred HHHhCCHHHHHHHHHHHHh------hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 001064 509 HLVSRNAEKARQILVDSLD------HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELS 582 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal~------~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~ 582 (1167)
.+ ..++.+|-..|.+-.. ..+.....+...+.+.+-.++ +..+.++|....+.. ..+.+++. ...
T Consensus 161 Vr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D---yv~aekc~r~~~qip----~f~~sed~-r~l 231 (308)
T KOG1585|consen 161 VR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD---YVQAEKCYRDCSQIP----AFLKSEDS-RSL 231 (308)
T ss_pred hh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH---HHHHHHHhcchhcCc----cccChHHH-HHH
Confidence 76 6678777776665332 123333344444433333222 334566666544332 12333333 345
Q ss_pred HHHHHHHHhhCCHHHHHHHH
Q 001064 583 CVFLEFLGLFGDAQLIKKAE 602 (1167)
Q Consensus 583 ~~~l~fe~~~Gd~~~~~~v~ 602 (1167)
++.+.+. ..||.+.+.+|.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 5555554 348888888776
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.012 Score=55.54 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=61.5
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
-..|+.+.|+..|.++|..||..+.++.+-++.+.-+|+.++|+.-+++|+++.-++-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t---------------------- 111 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT---------------------- 111 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc----------------------
Confidence 3557777777777777777777777777777777777777777777777776542110
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
-.-+..+.+++.+++.+|+-+.|+.-|+.|-++-
T Consensus 112 ----------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 112 ----------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred ----------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 0013345666677777777777777777776654
|
|
| >PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0019 Score=60.38 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=42.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---C---CCeeeCcEeE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---S---PIQLAGRQVY 1104 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~---~~~i~g~~l~ 1104 (1167)
|..|+|.+++..++.++|+++|++||.|..|++.. +-.-|||-|.+.++|+.|++. . +..|.+..+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 46789999999999999999999999999876421 223799999999999999865 3 5667777666
Q ss_pred EE
Q 001064 1105 IE 1106 (1167)
Q Consensus 1105 V~ 1106 (1167)
++
T Consensus 74 ~~ 75 (105)
T PF08777_consen 74 LE 75 (105)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0032 Score=55.51 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 455 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 455 P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
|+...++..++.++.++|++++|+.+|++++.+...-. ..+....++..+|.+... .|++++|+++|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 34456788889999999999999999999998742111 112234457888888766 999999999999999753
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0038 Score=67.74 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=74.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
+.-+.++|.+++|+.+|.+++... |.++-++...|..+.+...+.-|..-++.+ +.++-.+..+|.+++..-..+|++
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHHhhH
Confidence 444556788888888888888876 777788888887777888887777777776 667777778888888888888889
Q ss_pred HHHHHHHHHHHHhhhC
Q 001064 475 EDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~ 490 (1167)
++|.+-++.+|.+.|+
T Consensus 182 ~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhHHHHHhhCcc
Confidence 9999999999988864
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.034 Score=54.40 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhcCCCHH
Q 001064 515 AEKARQILVDSLDHVQLSKP 534 (1167)
Q Consensus 515 ~~~Ar~i~~kal~~~p~~~~ 534 (1167)
...|+.-|++.++.+|++..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 55677777777777777653
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=61.78 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
+.+..|+..|-++|.+.|+...||.+-|..+++.++++.+..-..|+|.++|+.+..-+....+.+ ....+++++..+.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l-~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL-QSKGYDEAIKVLQ 102 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH-hhccccHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999988 6788999999999
Q ss_pred HHHHhcCCCC--CCHHHHHHHHHH
Q 001064 193 RGLAYVGTDY--LSFPLWDKYIEY 214 (1167)
Q Consensus 193 ral~~~g~d~--~s~~lw~~y~~~ 214 (1167)
||......++ ...+||..+...
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHH
Confidence 9965433222 245778777664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.14 Score=53.97 Aligned_cols=194 Identities=13% Similarity=0.035 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH------HHHHHHcCChHHHHHHHHHHHHhc-----CCC
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY------LDFIERDGDFNKVVKLYERCLIAC-----ANY 387 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y------~~~~e~~g~~~~a~~~yeral~~~-----p~~ 387 (1167)
...|+.+++++++-..+.++++ -..++...|+.- +-+..+...+.++..+|+++.... |..
T Consensus 38 AvafRnAk~feKakdcLlkA~~--------~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASK--------GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHH--------HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 4468888899988888888885 222333334332 222234567788999999988752 222
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-----hhcCCC
Q 001064 388 P-EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVH-----TETSPG 456 (1167)
Q Consensus 388 ~-~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~-----~~~~P~ 456 (1167)
. ...-+.+..++ ..+.++|+.+|++++.+.... -.+++-..++++.+..++++|-..+.+-. ....+.
T Consensus 110 AAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 110 AAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 2 24555556554 567899999999999987422 12344445778888888888776666521 233566
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 457 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 457 ~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka 525 (1167)
....++..+.++.-..++..|..+|+...++..-. .........++..+ |. .|+.++..+++...
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~a-yd-~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTA-YD-EGDIEEIKKVLSSP 253 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHH-hc-cCCHHHHHHHHcCh
Confidence 66777877777777789999999999987764311 11223345566555 44 89999988887643
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0026 Score=45.31 Aligned_cols=32 Identities=34% Similarity=0.794 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 147 GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 147 ~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
|++++|+.+|+++|...|.+.++|+.|++|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 35667777777777777777777777777654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.69 E-value=1.6 Score=50.63 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCC----
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPG---- 456 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~---- 456 (1167)
......|+.++.+..+.|.++.|...+.++...... ..+.+.+.++.++...|+..+|...++..+. .+...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 344578999999999999999999999998875422 2678999999999999999999998887533 11110
Q ss_pred ----------------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 457 ----------------------------LLEAIIKHANMERRL------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 457 ----------------------------~~~~~~~~a~~e~r~------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
...+++.++.+.... ++.+++...|+++++..+. ....|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~k~~~ 296 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS------WEKAWH 296 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh------HHHHHH
Confidence 124578888888777 8899999999999999853 244677
Q ss_pred HHHHHHHH
Q 001064 503 QYSRFLHL 510 (1167)
Q Consensus 503 ~~a~~~~~ 510 (1167)
.|+.+...
T Consensus 297 ~~a~~~~~ 304 (352)
T PF02259_consen 297 SWALFNDK 304 (352)
T ss_pred HHHHHHHH
Confidence 77776544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.27 Score=50.89 Aligned_cols=203 Identities=17% Similarity=0.143 Sum_probs=133.2
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHH
Q 001064 368 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ 447 (1167)
Q Consensus 368 g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~ 447 (1167)
.+-+||.-+|||.. ++...|-..-|+.-|..++.+. |+-+.++..++.++...|+++.|.++|+
T Consensus 60 ~~eeRA~l~fERGv---------------lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFd 123 (297)
T COG4785 60 TDEERAQLLFERGV---------------LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFD 123 (297)
T ss_pred ChHHHHHHHHHhcc---------------hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhh
Confidence 34456666666643 4556677777888889999988 8999999999999999999999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH-HHHH
Q 001064 448 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL-VDSL 526 (1167)
Q Consensus 448 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~-~kal 526 (1167)
.. .+++|.+--+.+.++....--|++.-|..-+.+..+.+|++ | .-.+|..+... .-+..+|+.-+ +++-
T Consensus 124 s~-~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D---P-fR~LWLYl~E~----k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 124 SV-LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND---P-FRSLWLYLNEQ----KLDPKQAKTNLKQRAE 194 (297)
T ss_pred hH-hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC---h-HHHHHHHHHHh----hCCHHHHHHHHHHHHH
Confidence 98 89999998888887776666789999999988888887643 2 12356544322 34677777644 4443
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH---HHhhCCHHHHHHHHH
Q 001064 527 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF---LGLFGDAQLIKKAED 603 (1167)
Q Consensus 527 ~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~f---e~~~Gd~~~~~~v~~ 603 (1167)
. .+...|- +...+.-+|... ...+++++..-..++. .-.+.+.+.|-.. ....|+++.+..+.+
T Consensus 195 ~---~d~e~WG-~~iV~~yLgkiS----~e~l~~~~~a~a~~n~-----~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 195 K---SDKEQWG-WNIVEFYLGKIS----EETLMERLKADATDNT-----SLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred h---ccHhhhh-HHHHHHHHhhcc----HHHHHHHHHhhccchH-----HHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3 3445552 222333222211 2456666654333222 1122344444443 344688888888777
Q ss_pred HHHhh
Q 001064 604 RHARL 608 (1167)
Q Consensus 604 r~~~~ 608 (1167)
-....
T Consensus 262 Laian 266 (297)
T COG4785 262 LAVAN 266 (297)
T ss_pred HHHHH
Confidence 66543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.02 Score=61.80 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHH
Q 001064 393 RYVLCMEASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANM 467 (1167)
Q Consensus 393 ~ya~~l~~~g~~e~A~~vl~rA~~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~ 467 (1167)
+.|.-+...|++..|...|..-++.+|. ..+..++-++..+...|++++|..+|.++ .+-.|+ .++.+++.+..
T Consensus 146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~-~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV-VKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHH-HHhCCCCCCChHHHHHHHHH
Confidence 3333344567788888888887777732 24567777777777788888888888876 333444 45678888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhC
Q 001064 468 ERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 468 e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
..++|+.++|+.+|+++++..|+
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCC
Confidence 88888888888888888888775
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.038 Score=54.03 Aligned_cols=72 Identities=13% Similarity=-0.041 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHH
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 534 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~ 534 (1167)
..++.-+.-..+.|++++|++.|+......|-.. ..+...+.++...++ .+++++|+..+++.++++|.++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCC
Confidence 3455556666677888888888888777776432 222333444444445 78888888888888888888763
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.009 Score=64.99 Aligned_cols=105 Identities=17% Similarity=0.068 Sum_probs=84.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH
Q 001064 430 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 509 (1167)
Q Consensus 430 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~ 509 (1167)
+.-+.++|+|++|+.+|.+. +.+.|.++-.+..++..+.++..|..|..-++.|+.++. .+-..|..-+.. .
T Consensus 104 GN~yFKQgKy~EAIDCYs~~-ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAYSRR~~A-R 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTA-IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAYSRRMQA-R 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhh-hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHHHHHHHH-H
Confidence 34455899999999999998 789999999999999999999999999999999999874 112233333322 2
Q ss_pred HHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 510 LVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 510 ~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
..+|++++|.+-++.+|.+.|++-.|-..++.+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 358999999999999999999987776655544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.12 Score=53.96 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=78.6
Q ss_pred CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH
Q 001064 368 GDFNKVVKLYERCLIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 368 g~~~~a~~~yeral~~~p~~------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
+.+++|..+|.|+-...... -+.+...|.++.+.|+...|...|-.|-..+ +..+..+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy----------------kk~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY----------------KKVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh----------------hccChHH
Confidence 45666777777765442110 1244555555555555544444444443322 2334555
Q ss_pred HHHHHHHHhhhcCCChH------HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001064 442 ARAAYQLVHTETSPGLL------EAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 514 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~------~~~~~~a~~e~-r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 514 (1167)
|..+++++ +++.-+-. ..++..+++++ .+.++++|+.+|+.|-+...+.+....--.-++..+.+... .+.
T Consensus 92 Av~cL~~a-ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~-leq 169 (288)
T KOG1586|consen 92 AVNCLEKA-IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ-LEQ 169 (288)
T ss_pred HHHHHHHH-HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH-HHH
Confidence 55555544 23222111 11334444443 34788888888888888776543211111234455555444 777
Q ss_pred HHHHHHHHHHHHhhcCCCH
Q 001064 515 AEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 515 ~~~Ar~i~~kal~~~p~~~ 533 (1167)
+.+|..+|++.....-++.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 8999999988777655554
|
|
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=56.14 Aligned_cols=105 Identities=16% Similarity=0.340 Sum_probs=76.0
Q ss_pred HHHHHHHHHH-HhC--CCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcc---------CCCHHHHHHHHHHHHhh
Q 001064 117 KIRRVYDAFL-AEF--PLCYGYWKKYADHEARV----GSMDKVVEVYERAVQGV---------TYSVDIWLHYCIFAINT 180 (1167)
Q Consensus 117 ~ar~~ye~~l-~~~--P~~~~~W~~~a~~e~~~----~~~e~A~~l~eraL~~~---------P~s~~lw~~ya~~~~~~ 180 (1167)
..|+.|++-| ..+ .+-...|..|+.+.... +.-..-..+++||++.+ |.-+.+|+.|+++.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~--- 79 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC--- 79 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---
Confidence 3466777766 322 33458999999997642 23456778899998865 23368899998873
Q ss_pred cCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 181 YGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 181 ~~~~~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
++ .+.+|..+... +|.. ...+|..|+.++...|++..|..||++
T Consensus 80 -~d---p~~if~~L~~~~IG~~--~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 -DE---PRELFQFLYSKGIGTK--LALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred -CC---HHHHHHHHHHCCcchh--hHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 23 56778877753 4443 568999999999999999999999975
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0045 Score=64.98 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=48.4
Q ss_pred HHHHHHHh-cCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1046 FEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1046 ~~l~~~F~-~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++|-..|+ +||+|+.+. |.+.-.-...|-++|.|...++|++|++. |+--|+|++|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~--Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELN--VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhh--hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444445 999999853 55555556789999999999999999988 899999999987653
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0031 Score=76.31 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=16.3
Q ss_pred eEEEEEEEEEecCccccceeEEEEEEeeeCCeE
Q 001064 794 VLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGY 826 (1167)
Q Consensus 794 i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y 826 (1167)
+++.|.|.+++... ..-.|-+-|.|.....+|
T Consensus 873 ~m~~~as~~s~~~~-~~~~~~~~~rl~g~q~~~ 904 (1282)
T KOG0921|consen 873 VMCDVASAMSFPTP-FVPREKHHSRLSGTQRKF 904 (1282)
T ss_pred hhhhhhcccccccc-cccccccccccccchhhc
Confidence 44445555555443 334466666666554333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0024 Score=46.23 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=22.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001064 122 YDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 122 ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
|+++|+.+|++..+|..++.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66677777777777777777777777776664
|
|
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0047 Score=62.87 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=49.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i 1098 (1167)
...+|||.||..++++++|+.+|+.|--....+ ++.+ . +-+.||++|++.+.+..|+.. .|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~--~~~~-~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILK--IRAR-G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEE--EecC-C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 467899999999999999999999998776543 4443 2 346899999998888888765 35444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.36 Score=51.85 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH---HH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI---HL 427 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l---~~ 427 (1167)
...|-.-+.-+.+.|++++|...|+.....+|..+ .+.+..+..+-+.++++.|+...+|-+..+ |.++.+ ++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHHH
Confidence 45566667777788888888888888888777554 466666666677888888888888888888 444432 22
Q ss_pred HHHHHHHH-----cCCHHHHHHH---HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001064 428 FAARFKEQ-----NGDIDGARAA---YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 499 (1167)
Q Consensus 428 ~~a~~~e~-----~g~~~~A~~~---~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~ 499 (1167)
+.+..... ..|...++.. |+.. +...|++.-+- +-..-+..+...|. .
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~-i~ryPnS~Ya~-----------dA~~~i~~~~d~LA------------~ 168 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKEL-VQRYPNSRYAP-----------DAKARIVKLNDALA------------G 168 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHH-HHHCCCCcchh-----------hHHHHHHHHHHHHH------------H
Confidence 22222111 1122222222 2222 33344432110 00000111111111 1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 500 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 500 l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.=...++|..+ .|.+-.|..-++..++..|+.....+++..++..
T Consensus 169 ~Em~IaryY~k-r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ea 213 (254)
T COG4105 169 HEMAIARYYLK-RGAYVAAINRFEEVLENYPDTSAVREALARLEEA 213 (254)
T ss_pred HHHHHHHHHHH-hcChHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 11355677555 8889999999999999999888777777766654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.032 Score=56.35 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 115 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG----------SMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 115 ~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~----------~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
++.||+.++.....+|++.+.+.+|+-.+..+. -++.|+.-|+.||.++|+..+...+++..+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 577999999999999999999999988766442 3678999999999999999888888887766
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.026 Score=70.39 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHhcCCCceeee---EeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1040 PSTVTAFEIEEEFQNFGRIKPDG---VFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1040 p~~~t~~~l~~~F~~~G~i~~v~---i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
-..++..+|-.++..-+.|..-. |.+. ..|.||+-.. ..+...+.. ++..+.|+.|.|+..+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 35788888888887766664422 1222 2488999954 456667766 68899999999998753
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0048 Score=44.71 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 001064 376 LYERCLIACANYPEYWIRYVLCMEASGSMDLAH 408 (1167)
Q Consensus 376 ~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~ 408 (1167)
+|+|||..+|+++++|+.+|.++...|+.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 377888888888888888888888888888775
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.52 Score=52.32 Aligned_cols=238 Identities=14% Similarity=0.100 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-----EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPE 424 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~-----~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~ 424 (1167)
+.+.++..-.++..++.+++.+-.-++..-...+ .....++..+...+.++.+++.|+.|+.+.-.. ...
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3444444444555666677766666665522222 244445666666778899999999998765211 235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC----ChH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001064 425 IHLFAARFKEQNGDIDGARAAYQLVHTETSP----GLL------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 494 (1167)
Q Consensus 425 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P----~~~------~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~ 494 (1167)
++..++.+.-+..|+++|.-...++ .++.- ++. .+.+.++..++.+|.+-.|.++.++|.++.-..-+-
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA-~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKA-AELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhH-HHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 6777888899999999988666665 22211 111 234556667778899988999988888765321111
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHH-hhcCCCCCCCC
Q 001064 495 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF-LMSNSDSPSTA 573 (1167)
Q Consensus 495 ~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~era-l~~~~~~~~~l 573 (1167)
.....-...+++++ +..|+.+.|..-|+.|.... ..+-+.+..++.-.+ +-++++.. +....-+-
T Consensus 243 a~~arc~~~~aDIy-R~~gd~e~af~rYe~Am~~m---~~~gdrmgqv~al~g-------~Akc~~~~r~~~k~~~C--- 308 (518)
T KOG1941|consen 243 ALQARCLLCFADIY-RSRGDLERAFRRYEQAMGTM---ASLGDRMGQVEALDG-------AAKCLETLRLQNKICNC--- 308 (518)
T ss_pred HHHHHHHHHHHHHH-HhcccHhHHHHHHHHHHHHH---hhhhhhHHHHHHHHH-------HHHHHHHHHHhhccccc---
Confidence 22222346678884 45999999999999887532 233444555544322 22222221 11111111
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001064 574 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 610 (1167)
Q Consensus 574 ~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~ 610 (1167)
...++-.+.++.-+..|.--.+.|+.=|+...+.
T Consensus 309 ---rale~n~r~levA~~IG~K~~vlK~hcrla~iYr 342 (518)
T KOG1941|consen 309 ---RALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR 342 (518)
T ss_pred ---chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2457888999999999999999999999988874
|
|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0079 Score=64.60 Aligned_cols=78 Identities=24% Similarity=0.343 Sum_probs=60.0
Q ss_pred CccEEEEecCCCCCCHHHH------HHHHhcCCCceeeeEeeecCCC---cccccEE--EEEECCHHHHHHHHHh-CCCe
Q 001064 1030 EVKSVYVRNLPSTVTAFEI------EEEFQNFGRIKPDGVFVRNRKD---VVGVCYA--FVEFEDISGVQNAIQA-SPIQ 1097 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l------~~~F~~~G~i~~v~i~~~~~~~---g~~kg~a--fV~F~~~~~a~~Al~~-~~~~ 1097 (1167)
+..-+||-+|++.+..+++ .++|++||.|+.+-| ++++ ....+.+ ||+|.+.++|.++|.. .|..
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv---Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV---NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEe---cccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 4467899999988877763 679999999998533 3333 1222333 9999999999999988 8999
Q ss_pred eeCcEeEEEeccC
Q 001064 1098 LAGRQVYIEERRP 1110 (1167)
Q Consensus 1098 i~g~~l~V~~~r~ 1110 (1167)
++||.|+..+...
T Consensus 190 ~DGr~lkatYGTT 202 (480)
T COG5175 190 LDGRVLKATYGTT 202 (480)
T ss_pred ccCceEeeecCch
Confidence 9999999876553
|
|
| >PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.024 Score=49.21 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=45.8
Q ss_pred cEEEEecCCCCCCHHH----HHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1032 KSVYVRNLPSTVTAFE----IEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~----l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
..|||.|||.+.+... |++++..|| .|.. + ..|.|+|-|.+.+.|.+|.+. .|-.+.|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~----v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS----V-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE----E-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 4689999999988765 467777887 4433 2 236899999999999999987 799999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
.+...
T Consensus 72 ~~~~~ 76 (90)
T PF11608_consen 72 SFSPK 76 (90)
T ss_dssp ESS--
T ss_pred EEcCC
Confidence 98743
|
Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.015 Score=51.17 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIAC---A----NYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~---p----~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
...+..++..+...|++++|+..|++|+... + ....++..++.++...|++++|++.+++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3456667777777777888887777777652 1 112356666777777777777777777777654
|
... |
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0066 Score=42.47 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001064 148 SMDKVVEVYERAVQGVTYSVDIWLHYCIFA 177 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~P~s~~lw~~ya~~~ 177 (1167)
.+++|+.||+|.|..+| ++..|+.|++|+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 34556666666666553 355666666554
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.7 Score=48.51 Aligned_cols=155 Identities=7% Similarity=-0.023 Sum_probs=87.2
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhh-hhh----hHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKL-AQD----NIVKIRRVYDAFLAEFPLC--YGYWKKYADHEARVGSM 149 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~-~~~----~~~~ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~~~~ 149 (1167)
.++++++..-.+.|..-.+-++-+..|+-..... ..+ -+..+....+-+++..-.. ..+++++++-..+.-++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666776666666654444333333333322211 012 2233334444444443222 35677777777888889
Q ss_pred HHHHHHHHHHHhccCCCH-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC--C-CCHHHHHHHHHHHHHhh
Q 001064 150 DKVVEVYERAVQGVTYSV-------DIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD--Y-LSFPLWDKYIEYEYMQQ 219 (1167)
Q Consensus 150 e~A~~l~eraL~~~P~s~-------~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d--~-~s~~lw~~y~~~e~~~~ 219 (1167)
.+++.+-.-+|..-.... -+-+..+.+ -++.++++.+.||.|++..... + ..-.+...+..+....+
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl---gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL---GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh---hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 999988888887532222 122222222 2356889999999999864322 1 13456777777777777
Q ss_pred hHHHHHHHHHHHHhc
Q 001064 220 EWSRVAMIYTRILEN 234 (1167)
Q Consensus 220 ~~~~A~~iy~r~l~~ 234 (1167)
+++++.-.-.+++++
T Consensus 177 D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 177 DYEKALFFPCKAAEL 191 (518)
T ss_pred hhhHHhhhhHhHHHH
Confidence 788776666666554
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.81 Score=48.91 Aligned_cols=213 Identities=11% Similarity=0.070 Sum_probs=144.6
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHH-HHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID-GAR 443 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~-~A~ 443 (1167)
+.....||+.+-+.||..+|-+..+|.---.++... .+..+-++.+.+.++-+ |++-.+|...-.+.+..|+.. .-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchH
Confidence 345678999999999999999999998777667553 46777788999999877 889999999999999999887 666
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC-----CHHHH
Q 001064 444 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-----NAEKA 518 (1167)
Q Consensus 444 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g-----~~~~A 518 (1167)
.+.+.+ +..+.++..+|.-+.......+.++.-..+-.+.|+.+--+.. +|.+-..+.....| .++.=
T Consensus 134 ef~~~~-l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS------AWN~Ryfvi~~~~~~~~~~~le~E 206 (318)
T KOG0530|consen 134 EFTKLM-LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS------AWNQRYFVITNTKGVISKAELERE 206 (318)
T ss_pred HHHHHH-HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc------hhheeeEEEEeccCCccHHHHHHH
Confidence 777776 6778889999988877777788899888888888887643321 33221100000011 24455
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhHhh-CC---ChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH-HHHHHhhC
Q 001064 519 RQILVDSLDHVQLSKPLLEALIHFESI-QS---SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF-LEFLGLFG 593 (1167)
Q Consensus 519 r~i~~kal~~~p~~~~l~~~~~~~e~~-~~---~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~-l~fe~~~G 593 (1167)
..+..+.+...|+|..-|.-+.-+... .| .++-++.+..++ +..... ++..-..|...| .+++....
T Consensus 207 l~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~---~~~~~~-----sP~lla~l~d~~~e~~l~~~~ 278 (318)
T KOG0530|consen 207 LNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY---LQLPKR-----SPFLLAFLLDLYAEDALAYKS 278 (318)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh---hccCCC-----ChhHHHHHHHHHHHHHhhccc
Confidence 677888899999999999755555443 22 122223444443 222221 344455667777 55665554
Q ss_pred C
Q 001064 594 D 594 (1167)
Q Consensus 594 d 594 (1167)
+
T Consensus 279 ~ 279 (318)
T KOG0530|consen 279 S 279 (318)
T ss_pred c
Confidence 3
|
|
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.007 Score=42.35 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 144 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~ 144 (1167)
.+++||.+|++++..+|+ ...|++||++|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 578999999999999987 589999999985
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.13 Score=56.35 Aligned_cols=153 Identities=16% Similarity=0.075 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCC---CHHHHHHHHHHHHHc
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CAN---YPEYWIRYVLCMEAS 401 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~---~~~~w~~ya~~l~~~ 401 (1167)
++.-+|....++.|+ -.|.++-.|..--+.+--+|+.+.-+.++++.+-. ++. +.-+.-.|+..|+..
T Consensus 117 g~~h~a~~~wdklL~--------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLD--------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred ccccHHHHHHHHHHH--------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 345555566777776 45666777776655555678888888888998865 333 345667788888999
Q ss_pred CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-H---HHHHHHHHHHHHcCCHHHH
Q 001064 402 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-L---EAIIKHANMERRLGNLEDA 477 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-~---~~~~~~a~~e~r~g~~e~A 477 (1167)
|-+++|.+..+||++++ +.+.......+.+++..|++.++.+...+. ....-.. . ..|--.+.++..-+.++.|
T Consensus 189 g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t-ed~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT-EDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred ccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc-ccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 99999999999999998 777788888999999999999999988874 2222111 1 1244456666666889999
Q ss_pred HHHHHHHHHhh
Q 001064 478 FSLYEQAIAIE 488 (1167)
Q Consensus 478 ~~~~~kAl~~~ 488 (1167)
..+|++-|-..
T Consensus 267 leIyD~ei~k~ 277 (491)
T KOG2610|consen 267 LEIYDREIWKR 277 (491)
T ss_pred HHHHHHHHHHH
Confidence 99998766543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1 Score=47.31 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE-NWHNYLDFIERDGDFNKVVKLYERCLIACANY 387 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~-~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~ 387 (1167)
++.-.+......+|+-.+.+..|-..|.++-. +|.+--+..+.. .+..-...+ +..++++|+.++++++.+..+.
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~---~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAAD---LHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh
Confidence 33444555567889999999999999988865 454433333221 222223333 4568999999999999885433
Q ss_pred H------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001064 388 P------EYWIRYVLCMEAS-GSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP 455 (1167)
Q Consensus 388 ~------~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 455 (1167)
- ...+.++.+++.. .+++.|+..|+.|-+-+.-. ....++.-|.+.-+.+++.+|+.+|+++....--
T Consensus 107 Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 107 GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 2455788888764 78999999999998766211 2345666777778889999999999986322222
Q ss_pred ChHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 456 GLLEA------IIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 456 ~~~~~------~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
+++.- +++-+....-..+.-.+...+++..+++|.
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 22221 233344444445666677777777777774
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.23 Score=52.74 Aligned_cols=135 Identities=14% Similarity=0.170 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh---hhcC--CChHHHHHHHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH---TETS--PGLLEAIIKHA 465 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~---~~~~--P~~~~~~~~~a 465 (1167)
-+.|+.++.-.+.+.-....|.+.++.+++..+.+.-.++.+..+.||.+.|...|++.- ..++ -+...+....+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555555566667777888899988878889999999999999999999999998641 1111 22334556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
.+..-.+|+-.+...|.+++..++.+ +.....-+-++.. .|+...|.+.++.+++..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~------~~a~NnKALcllY-lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRN------AVANNNKALCLLY-LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCc------hhhhchHHHHHHH-HHHHHHHHHHHHHHhccCCcc
Confidence 67777889999999999999887643 3334444555444 899999999999999999864
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.01 Score=42.15 Aligned_cols=31 Identities=35% Similarity=0.773 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 144 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~ 144 (1167)
+++.++.+|++++..+|.+..+|..|++++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 5788999999999999999999999999875
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.071 Score=59.35 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=63.7
Q ss_pred ccEEEEecCC-CCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+..|-|.||. ..+|.+.|-.+|+-||.|.+|+|+. +++ --|.|.+.|...|+-|++. +|+.+.|++|+|...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~-nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY-NKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeee-cCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 4778899985 5689999999999999999988743 432 3799999999999999988 799999999999887
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
|-
T Consensus 371 KH 372 (492)
T KOG1190|consen 371 KH 372 (492)
T ss_pred cC
Confidence 63
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.87 Score=48.57 Aligned_cols=139 Identities=13% Similarity=0.110 Sum_probs=108.0
Q ss_pred hhhHHHHHHH--------HHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--
Q 001064 351 VTELENWHNY--------LDFIERDGDFNKVVKLYERCLIAC-ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-- 419 (1167)
Q Consensus 351 ~~~~~~W~~y--------~~~~e~~g~~~~a~~~yeral~~~-p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~-- 419 (1167)
...+..|.+- +.++...+++.-.+.+|.+.+..+ +..+-+.-.++..-.+.||.+.|...+++.-+..-
T Consensus 166 ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL 245 (366)
T KOG2796|consen 166 ESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL 245 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence 3446677764 444456678888899999999987 56677777888877788999999988886644321
Q ss_pred ---ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 420 ---KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 420 ---p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
.....++...+.++.-.+++.+|...|.++ ++.+|.++.+....+.+..-+|+...|++.++.++...|.
T Consensus 246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i-~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI-LRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hccchhHHHHhhhhhheecccchHHHHHHHhhc-cccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 123445566677777788999999999997 7789999888888888888889999999999999999985
|
|
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.11 Score=57.01 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=55.5
Q ss_pred EecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEEeccCCC
Q 001064 1036 VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEERRPNT 1112 (1167)
Q Consensus 1036 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~~~r~~~ 1112 (1167)
|-|--+.+|.+-|..+-...|+|.+|-|+ +++| --|.|||++.+.|++|..+ ||..|-. ..|+|+++++.+
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIf---kkng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIF---KKNG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEE---eccc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 34555789999999999999999986432 2233 3799999999999999987 8887743 469999998754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.09 Score=52.58 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
.....++.++...|++++|+.++++++..+|.+..+|..++..+. ..|+...|.++|++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 345566667777788888888888888888888888888888888 67888888888887765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.023 Score=65.42 Aligned_cols=68 Identities=26% Similarity=0.265 Sum_probs=58.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHh-cCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i 1098 (1167)
+.++||||+||.-++.++|..+|. -||.|..++|-+ |.+-+-+||-|=|+|.+..+..+||.+.=+.|
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDt-D~k~KYPkGaGRVtFsnqqsYi~AIsarFvql 437 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDT-DPKLKYPKGAGRVTFSNQQAYIKAISARFVQL 437 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEecc-CcccCCCCCcceeeecccHHHHHHHhhheEEE
Confidence 569999999999999999999998 799999988744 44456689999999999999999999854444
|
|
| >KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.018 Score=62.20 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=10.0
Q ss_pred hHhHHHHHHHHh
Q 001064 721 VGSYFVGQYYQV 732 (1167)
Q Consensus 721 vg~~Fv~~YY~~ 732 (1167)
+-.+|-..||..
T Consensus 206 ~~~~~~~ey~~R 217 (465)
T KOG3973|consen 206 QCESFSREYYNR 217 (465)
T ss_pred HHHHHHHHHHHH
Confidence 667899999976
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=5.1 Score=48.28 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
++.|-...++++|.+.|+..- + -..+++.+-...+++. +|.+....|.+.++.-.+++.+
T Consensus 803 g~~fa~~~~We~A~~yY~~~~----------~------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 803 GETFAEMMEWEEAAKYYSYCG----------D------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----------c------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHH
Confidence 344555666777777776542 1 2234444444444443 3445555678888888888888
Q ss_pred HHcCCHHHHHHHHHH
Q 001064 399 EASGSMDLAHNALAR 413 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~r 413 (1167)
...|--++|...|-|
T Consensus 863 ~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLR 877 (1189)
T ss_pred HhhchHHHHHHHHHh
Confidence 778877777766643
|
|
| >PF15008 DUF4518: Domain of unknown function (DUF4518) | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.061 Score=57.97 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=85.2
Q ss_pred CCc-chhHhHHHHHHHHhhhc--CcccccccccCCceEE-EE-cCCc-ccch-hchHHHHHHHhcCCCcce-----eEee
Q 001064 716 AYP-AQVGSYFVGQYYQVLQQ--QPDLVHQFYSDASSMI-RV-DGDS-TESA-SSMLDIHSLVISLNFTAI-----EIKT 783 (1167)
Q Consensus 716 ~~~-~~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~s~~~-~~-~g~~-~~~~-~~~~~i~~~~~~l~~~~~-----~i~~ 783 (1167)
.|| ...|..|.+.||.+|+. +-=....|+.|- .+- .+ .++. ..-. .|-+.+..+|.+|..+.. .+++
T Consensus 124 ~~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da-~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~ 202 (262)
T PF15008_consen 124 QYPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDA-KLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDS 202 (262)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccChhhccCCC-eEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCC
Confidence 444 45999999999999998 433466788884 332 22 2222 2222 566778889999976542 3554
Q ss_pred --eeccccCCCceEEEEEEEEEecCccccceeEEEEEEeeeC---CeEEEEcceEEec
Q 001064 784 --INSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFL 836 (1167)
Q Consensus 784 --~d~q~~~~~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nd~fr~~ 836 (1167)
+.|-.++.|-|+|.|.|+|-.++.+ -=-|=|+|=|...+ |.|.|.+=-+|..
T Consensus 203 ~G~k~~~~phGlV~V~v~GTvH~~~~C-lGiFEq~FGLiRdP~~~N~WKiK~~~l~i~ 259 (262)
T PF15008_consen 203 DGVKGRISPHGLVLVAVCGTVHRDNTC-LGIFEQIFGLIRDPFAENNWKIKFVNLRIR 259 (262)
T ss_pred CCcceEEcCCCcEEEEEeeeEecCCce-EeehhhhhhcccCccccCceeEEEEEEEEE
Confidence 6677788888999999999887664 34599999999775 8999987666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.34 Score=52.89 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=92.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
...+++..+..+|..++...+.+.++-+-|+.+|...|+.+.|..+|...=.....+..........++++..+..+...
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35688999999999999999999999999999999999999999988653221101111111234566777666665555
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+-.+ ...+|++.++-+..+..+.-.|+.++|.+.+-..+..+.
T Consensus 225 l~~~--~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 225 LQRR--LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHH--HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5444 356999999999999999999999999888777776653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.1 Score=46.17 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=88.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHc---CC-------HHHHHHHHHHHHHhhhccChHHHH
Q 001064 359 NYLDFIERDGDFNKVVKLYERCLIACANYPEY-WIRYVLCMEAS---GS-------MDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 359 ~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~-w~~ya~~l~~~---g~-------~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
.++--.-+.++++.|+...+|-+...|.++++ |..|...+..- .+ ..+|..-|+..+..+ |++.-.-.
T Consensus 76 ~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya~d 154 (254)
T COG4105 76 DLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-PNSRYAPD 154 (254)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-CCCcchhh
Confidence 33333347799999999999999999998873 44444444322 11 235667777778777 55432211
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 507 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~ 507 (1167)
...++-. +..++ ...=+..+.++.+.|.+..|..-++..++..+...+ ..+.+..+...
T Consensus 155 A~~~i~~----~~d~L--------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~---~~eaL~~l~ea 213 (254)
T COG4105 155 AKARIVK----LNDAL--------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA---VREALARLEEA 213 (254)
T ss_pred HHHHHHH----HHHHH--------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc---hHHHHHHHHHH
Confidence 1111100 00111 111234567888999999999999999998764322 12233334444
Q ss_pred HHHHhCCHHHHHHHHHHHHhh-cCCCH
Q 001064 508 LHLVSRNAEKARQILVDSLDH-VQLSK 533 (1167)
Q Consensus 508 ~~~~~g~~~~Ar~i~~kal~~-~p~~~ 533 (1167)
.+ ..|-.++|.+. .+.|.. .|++.
T Consensus 214 Y~-~lgl~~~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 214 YY-ALGLTDEAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred HH-HhCChHHHHHH-HHHHHhcCCCCc
Confidence 33 38877777765 445554 46665
|
|
| >PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT [] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.042 Score=50.50 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=50.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecC------CCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEe-
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR------KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV- 1103 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~------~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l- 1103 (1167)
.+.|.|-+.|.. ....+-+.|++||.|.+..-..++. ......++-.|.|+++.+|.+||..||..|+|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 467888899987 4556779999999997642001110 01124568999999999999999999999998754
Q ss_pred EEEec
Q 001064 1104 YIEER 1108 (1167)
Q Consensus 1104 ~V~~~ 1108 (1167)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 35544
|
This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.47 E-value=1 Score=52.66 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=41.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 140 ADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 140 a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
..-..+..+..+-+++-.+||++.|++.+.|+.++.=. ...+.++..+|++|++
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe---A~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE---ASTIVEAEELLRQAVK 228 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc---ccCHHHHHHHHHHHHH
Confidence 33444667888888888899999999988887776542 3457888888998887
|
The molecular function of this protein is uncertain. |
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.03 Score=64.49 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=48.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc--cccc---EEEEEECCHHHHHHHHHh
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVC---YAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g--~~kg---~afV~F~~~~~a~~Al~~ 1093 (1167)
-.++||||+||++++|+.|...|..||.++- +-..+....+ ..+| |+|+.|+++.++..-|.+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 4689999999999999999999999999862 2111111111 2456 999999999998877765
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.034 Score=39.94 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
.+|..++.++...|++++|++.|+++|.+.|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777776653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.28 Score=52.23 Aligned_cols=118 Identities=13% Similarity=0.191 Sum_probs=87.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH-HHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMD-KVVEV 155 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e-~A~~l 155 (1167)
..-+.|+...+.+|.+||-++..|..--.++..+ ..++.+-...+++.+..+|.|+..|..--.+....|+.. +=.++
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 4556788888899999999999998766666665 356777788899999999999999988888877788777 66778
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 156 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 156 ~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
.+++|.....+.-.|.+- +|.+...++++.-...-.+.|.
T Consensus 136 ~~~~l~~DaKNYHaWshR-qW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHR-QWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHHhccccchhhhHHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence 888888877788888654 5555344555544444444443
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.073 Score=62.41 Aligned_cols=112 Identities=22% Similarity=0.288 Sum_probs=79.2
Q ss_pred hhHhHHHHHHHHhhhcCcc-cccccccCCceEEE-EcCCcc------------------------------cchhchHHH
Q 001064 720 QVGSYFVGQYYQVLQQQPD-LVHQFYSDASSMIR-VDGDST------------------------------ESASSMLDI 767 (1167)
Q Consensus 720 ~vg~~Fv~~YY~~l~~~p~-~l~~fY~~~s~~~~-~~g~~~------------------------------~~~~~~~~i 767 (1167)
++-.+|+++||...+++.. .+-..|+++|+|.+ .+.... ....|..+|
T Consensus 339 ~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g~~~I 418 (585)
T KOG3763|consen 339 QLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHGACDI 418 (585)
T ss_pred HHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhccchHH
Confidence 4667999999999996544 46677788888874 221100 123466799
Q ss_pred HHHHhcCCCcceeE----eeeeccccCCCceEEEEEEEEEecCcc---ccce---eEEEEEEeeeC-CeEEEEcceE
Q 001064 768 HSLVISLNFTAIEI----KTINSLGSWNGGVLVMVSGSVKTKEFC---RRRK---FVQTFFLAPQE-KGYFVLNDIF 833 (1167)
Q Consensus 768 ~~~~~~l~~~~~~i----~~~d~q~~~~~~i~v~v~G~~~~~~~~---~~~~---F~q~F~L~~~~-~~y~v~nd~f 833 (1167)
...|..||-+.+.. ..+-+|. ..++.+.|.|.+.-.+.. .-+. |+-||+..|.+ .+-.|.||.+
T Consensus 419 v~aLs~LPkT~Hdl~s~vvDv~~~~--~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d~L 493 (585)
T KOG3763|consen 419 VVALSALPKTQHDLDSFVVDVWYQT--GNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVNDQL 493 (585)
T ss_pred HHHHHhCccchhhhhhhheeeeecc--cceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEecee
Confidence 99999999887643 3444444 357889999998543221 1233 99999999998 5899999988
|
|
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.17 Score=50.42 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=48.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
...+|.|.+||.+.++++|+++..+-|.|....| .+ -|.+.|+|...++++-||..
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv-~r-------Dg~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADV-QR-------DGVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeee-ec-------ccceeeeeeehhhHHHHHHh
Confidence 4589999999999999999999999999987664 21 25899999999999999976
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.6 Score=49.41 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=49.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--c-c--ChHHHHHHHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYP------EYWIRYVLCMEASGSMDLAHNALARATHVFV--K-R--LPEIHLFAARFKEQ 435 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p-~--~~~l~~~~a~~~e~ 435 (1167)
.|+++.++..-+.-|.+...+- .++-.++.++.-.|+++.|.+.|++++.+.. . + ....-+.++..+..
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 4778877776666555422221 2555666777777889999988888765431 1 1 12333444555555
Q ss_pred cCCHHHHHHHHHH
Q 001064 436 NGDIDGARAAYQL 448 (1167)
Q Consensus 436 ~g~~~~A~~~~~~ 448 (1167)
..++++|+..+.+
T Consensus 288 l~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 288 LKEVQKAITYHQR 300 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 6667777766665
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.62 Score=56.24 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=106.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHH------HHHHHH-HHHH----HcCCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 359 NYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYV-LCME----ASGSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 359 ~y~~~~e~~g~~~~a~~~yeral~~~p~~~~------~w~~ya-~~l~----~~g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
+.+.+.=-.||-+..+.++.+|.....-... +|+..+ ..+. ...+.+.|..++.+..+.+ |+..-..+
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl~ 271 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFLF 271 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3333333368999999999999875322221 222222 1111 1345688999999999999 78888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLE----AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 503 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~----~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~ 503 (1167)
+.++++...|++++|...|++++ .....-.. .++.++....-+.++++|..+|.+.++.... ...+|..
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~-~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W------Ska~Y~Y 344 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAI-ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW------SKAFYAY 344 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhc-cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc------HHHHHHH
Confidence 89999999999999999999873 22222111 2455555666789999999999999987632 1334433
Q ss_pred HHHHHHHHhCCH-------HHHHHHHHHHHh
Q 001064 504 YSRFLHLVSRNA-------EKARQILVDSLD 527 (1167)
Q Consensus 504 ~a~~~~~~~g~~-------~~Ar~i~~kal~ 527 (1167)
.+...+...|+. ++|.++|+++-.
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 333333347878 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.044 Score=39.34 Aligned_cols=34 Identities=12% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 498 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 498 ~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+.+|..+|.+++. .|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 3578888988887 999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.95 Score=49.82 Aligned_cols=157 Identities=13% Similarity=-0.044 Sum_probs=115.7
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC---hHHHHHHHHHHHHcCCHHHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGA 442 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~---~~l~~~~a~~~e~~g~~~~A 442 (1167)
..|++-+|-..+++.|...|.+--.|..--..+...|+.+.-+..+++.+-...++. .-++-+|+.-+++.|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 457788888899999999999888887777777778888888888888876532333 45667788889999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 443 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL 522 (1167)
Q Consensus 443 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~ 522 (1167)
.+.-+++ +++++.++=+....+.++.-.|+++++.+.+.+--..=. +.+.....=|-+.+-|+.. .+.++.|.+||
T Consensus 195 Ek~A~ra-lqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s~mlasHNyWH~Al~~iE-~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRA-LQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QSWMLASHNYWHTALFHIE-GAEYEKALEIY 270 (491)
T ss_pred HHHHHhh-ccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hhhHHHhhhhHHHHHhhhc-ccchhHHHHHH
Confidence 9999998 789998876667777777788999999888775322111 1000011124456666554 67899999999
Q ss_pred HHHH
Q 001064 523 VDSL 526 (1167)
Q Consensus 523 ~kal 526 (1167)
.+-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.15 E-value=6.9 Score=50.38 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
.|-.-.++.++.+-+.+++.+|.--... +..++..||..|.....+++|.-.|+++
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 3445555556666555555444332211 2235555666555555555554444433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.3 Score=50.87 Aligned_cols=172 Identities=16% Similarity=0.098 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hccChHHHHHHHHHHHH---cCCHHHHHHHHHHHhhhcCCChHH
Q 001064 386 NYPEYWIRYVLCMEASGSMDLAHNALARATHVF---VKRLPEIHLFAARFKEQ---NGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 386 ~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~---~p~~~~l~~~~a~~~e~---~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
..+++.+.+...+....+++..+++.+..-.+. ..+.+.+.+.||..+.+ .|+.++|+.++..++....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 345667777766767778888887776665441 24577888899999998 999999999999965666777788
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC-H---HHHHHHHHHH-
Q 001064 460 AIIKHANMERRL---------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN-A---EKARQILVDS- 525 (1167)
Q Consensus 460 ~~~~~a~~e~r~---------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~-~---~~Ar~i~~ka- 525 (1167)
++...+.++.++ ..+++|+..|+++.+..++ .. --++++-++.. .|. . .+.+++--+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y------~GIN~AtLL~~-~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YY------SGINAATLLML-AGHDFETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-cc------chHHHHHHHHH-cCCcccchHHHHHHHHHHH
Confidence 776666554322 2478999999999998842 11 11455555554 443 2 2334433111
Q ss_pred --H-h--hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcC
Q 001064 526 --L-D--HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 526 --l-~--~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~ 566 (1167)
+ + .......+|+.--.+|..... .+.+.+.+++++++...
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~-~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLA-GDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcC
Confidence 1 1 112335788755555554421 12566888899988764
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.027 Score=68.62 Aligned_cols=17 Identities=29% Similarity=0.130 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhCCH
Q 001064 579 EELSCVFLEFLGLFGDA 595 (1167)
Q Consensus 579 ~~i~~~~l~fe~~~Gd~ 595 (1167)
..++-.|+.-...+|++
T Consensus 656 i~~L~~~ll~~~~fg~~ 672 (1282)
T KOG0921|consen 656 IMTLCNRLLEHQEFGQA 672 (1282)
T ss_pred hhhhhhhhhhhhhhccc
Confidence 33444444444445544
|
|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.07 Score=55.35 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=59.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V~~ 1107 (1167)
+...+|+.|||..++.+.+..+|.+|.-.+.++. +... ++.|||+|.+...+..|... .+..|. ...+.|.+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~-i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRL-IPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEe-ccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 3589999999999999999999999999988763 4322 47999999998887878776 577766 66677766
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 53
|
|
| >PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.045 Score=44.14 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=40.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHH
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al 1091 (1167)
+.|-|.|.+.+..+ .+..+|..||+|..+.+ . ....+.+|.|.+..++++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~--~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYV--P-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEc--C-----CCCcEEEEEECCHHHHHhhC
Confidence 56778888877654 45569999999988543 2 13459999999999999885
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.87 Score=52.85 Aligned_cols=158 Identities=15% Similarity=0.066 Sum_probs=103.9
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----c---------------------cCh
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV----K---------------------RLP 423 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~----p---------------------~~~ 423 (1167)
|.+..+.+ |..+|.+.+..+.++.++..+|+...|.++++||+=.+. + .+.
T Consensus 25 Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR 100 (360)
T PF04910_consen 25 DPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR 100 (360)
T ss_pred CHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch
Confidence 55554433 455788888888888888888888777777777754332 1 122
Q ss_pred HHHH---HHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCchH
Q 001064 424 EIHL---FAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 498 (1167)
Q Consensus 424 ~l~~---~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e-~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~ 498 (1167)
.+|+ .+...+.+.|-+.-|.+..+-+ ..++|. ++...+.+++++ .+.++++-.+.+++........+ ....+|
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlL-lsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-~~~~lP 178 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLL-LSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-WLSLLP 178 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-hhhhCc
Confidence 3333 3566778899999999988776 789998 776655566644 56688888888888766531110 000134
Q ss_pred HHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHhhcCCCH
Q 001064 499 MLYAQYSRFLHLVSRNA---------------EKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 499 ~l~~~~a~~~~~~~g~~---------------~~Ar~i~~kal~~~p~~~ 533 (1167)
.+....+-.++. .++. ++|+..+.+|+..+|.-.
T Consensus 179 n~a~S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 179 NFAFSIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred cHHHHHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 454444444344 5555 899999999999998644
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.84 E-value=8 Score=46.71 Aligned_cols=187 Identities=14% Similarity=0.063 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001064 321 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 399 (1167)
Q Consensus 321 ~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~ 399 (1167)
++++.+++-.....+...-. -.|.. .-+.|+..++..-..-.++.|.+.|.+|-.. . +++.+|.
T Consensus 769 lr~klgDwfrV~qL~r~g~~-------d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-e-------~~~ecly 833 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRNGGS-------DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-E-------NQIECLY 833 (1189)
T ss_pred HHHhhhhHHHHHHHHHccCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-H-------hHHHHHH
Confidence 34555666655555543221 01222 2357777777665566677788888776543 1 2222222
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 479 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 479 (1167)
....+++.. ...... |.+..+.-..|++....|.-++|...|-+. ..|.-.- .....++...+|.+
T Consensus 834 ~le~f~~LE----~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~pkaAv------~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 834 RLELFGELE----VLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLPKAAV------HTCVELNQWGEAVE 899 (1189)
T ss_pred HHHhhhhHH----HHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCcHHHH------HHHHHHHHHHHHHH
Confidence 222333222 112222 677778888899999999999998887764 2332111 11111222333333
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhC
Q 001064 480 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 546 (1167)
Q Consensus 480 ~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~ 546 (1167)
+-++. + -+....+...++.-+.. .++..+|.+.++++=.+ -+...|+..++.-|...
T Consensus 900 laq~~-~-------l~qv~tliak~aaqll~-~~~~~eaIe~~Rka~~~-~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 900 LAQRF-Q-------LPQVQTLIAKQAAQLLA-DANHMEAIEKDRKAGRH-LDAARLLSQMAEREQEK 956 (1189)
T ss_pred HHHhc-c-------chhHHHHHHHHHHHHHh-hcchHHHHHHhhhcccc-hhHHHHHHHHhHHHhhc
Confidence 32211 0 11112344444333333 67788888888777322 23445555555554443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.82 Score=48.25 Aligned_cols=117 Identities=14% Similarity=0.157 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
.+.+.-+.-+-+.|++.+|...|..|+.+..+ ...-++-|+.+ -.+ +. ....-+++.|..++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~--------L~lkEkP~e~e-W~e-Ld-------k~~tpLllNy~QC~L 241 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRN--------LQLKEKPGEPE-WLE-LD-------KMITPLLLNYCQCLL 241 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH--------HHhccCCCChH-HHH-HH-------HhhhHHHHhHHHHHh
Confidence 34444454445667777777777777765211 11111112111 000 00 112236778888888
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
..|++-++++....+ +...|++..+++.++......-|..+|..-|.++|+++|
T Consensus 242 ~~~e~yevleh~sei-L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEI-LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 889999999988887 788999999999999998888899999999999999986
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.65 E-value=29 Score=48.37 Aligned_cols=134 Identities=27% Similarity=0.372 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIAC-------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 426 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~ 426 (1167)
-++|..-+..-....+..+-+-.++|++... ..-.+.|+.+|++-...|.++.|.+.+-.|.+. .-++++
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---r~~~i~ 1705 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---RLPEIV 1705 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---ccchHH
Confidence 3678887766544444555566666666542 123479999999888899999999998888774 378999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------------hH----HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhh
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPG------------LL----EAIIKHANMERRLGNL--EDAFSLYEQAIAIE 488 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~----~~~~~~a~~e~r~g~~--e~A~~~~~kAl~~~ 488 (1167)
+..|.+++..|+-..|+.+++..+..-.|+ +. .+.+.+..+....+++ +.....|..+.+..
T Consensus 1706 ~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1706 LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 999999999999999999999874232333 11 1344555555555664 67888999999998
Q ss_pred hC
Q 001064 489 KG 490 (1167)
Q Consensus 489 ~~ 490 (1167)
+.
T Consensus 1786 ~e 1787 (2382)
T KOG0890|consen 1786 PE 1787 (2382)
T ss_pred cc
Confidence 74
|
|
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.021 Score=63.38 Aligned_cols=72 Identities=28% Similarity=0.317 Sum_probs=56.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V~ 1106 (1167)
+++-|.++|||++++|++|-+++.+||.|..+.+ + +++.-||++|.|.++|...+.. -.-.+.|+.|.|.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~-l------kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLM-L------KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeee-e------ccchhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 5689999999999999999999999999998543 2 2455899999998887664432 2566788888886
Q ss_pred ec
Q 001064 1107 ER 1108 (1167)
Q Consensus 1107 ~~ 1108 (1167)
+.
T Consensus 100 ~s 101 (492)
T KOG1190|consen 100 YS 101 (492)
T ss_pred hh
Confidence 53
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.3 Score=52.54 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
...+..+.+...+.-|-++|.++. . . -..+++....++.++|..+-++-=+ ..+.+|..|+.
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~g-D-----~---ksiVqlHve~~~W~eAFalAe~hPe---------~~~dVy~pyaq 812 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMG-D-----L---KSLVQLHVETQRWDEAFALAEKHPE---------FKDDVYMPYAQ 812 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhc-c-----H---HHHhhheeecccchHhHhhhhhCcc---------ccccccchHHH
Confidence 334444555555555666666541 1 0 1233444456777887776554322 23568899999
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 001064 507 FLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 507 ~~~~~~g~~~~Ar~i~~ka 525 (1167)
|+.. ..++++|-+.|-+|
T Consensus 813 wLAE-~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 813 WLAE-NDRFEEAQKAFHKA 830 (1081)
T ss_pred Hhhh-hhhHHHHHHHHHHh
Confidence 9887 78899999988877
|
|
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.026 Score=61.94 Aligned_cols=74 Identities=26% Similarity=0.271 Sum_probs=57.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCce--eeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
-.|-.++||+++++.++.++|..--.|. ..+|+...+..|+..|-|||.|..+++++.||..+...|+.|-|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566789999999999999997332332 1224444566788999999999999999999998877777776655
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.50 E-value=17 Score=45.00 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
+.+++|..+-+.....-|. -...|..|++++.-.++++.|-.++-+++. ++...|........
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---NNAAEWELWVFKFA 434 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---chHHHHHHHHHHhc
Confidence 4566666665555444443 347899999999999999999887766664 67788877765544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.21 Score=49.84 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
.....++..+...|++++++.++++++..+|.+..+|..++..+...|+..+|+.+|++.....
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4566777777889999999999999999999999999999999999999999999998887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.11 Score=61.53 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=65.0
Q ss_pred Ccc-EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVK-SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~-~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
+++ .|-|.|+|++++-+||.++|.-|-.+-. .|.++....|+..|-+.|-|++.++|.+|... ++..|..|.|++..
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~-sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPN-SIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCC-ceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 455 6779999999999999999999976644 25567677799999999999999999999876 79999999888753
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.068 Score=38.44 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
..|...+..+..++++++|+..|+++|++.|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.46 Score=53.45 Aligned_cols=92 Identities=20% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
+.-.|+++.|+..-+.- +++.-.. -.++..+++.+.=+|+++.|.+.|++.+.+...-..-..-...-..++.
T Consensus 205 yYlLGdf~~ai~~H~~R-L~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgN 283 (639)
T KOG1130|consen 205 YYLLGDFDQAIHFHKLR-LEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGN 283 (639)
T ss_pred eeeeccHHHHHHHHHHH-HHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhh
Confidence 34457777776554421 1111111 1234445555666789999999999887754310000000112234555
Q ss_pred HHHHHhCCHHHHHHHHHHHH
Q 001064 507 FLHLVSRNAEKARQILVDSL 526 (1167)
Q Consensus 507 ~~~~~~g~~~~Ar~i~~kal 526 (1167)
.++. ..++++|+.++.+-|
T Consensus 284 tytl-l~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 284 TYTL-LKEVQKAITYHQRHL 302 (639)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 5444 556777777766654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.32 Score=51.14 Aligned_cols=116 Identities=16% Similarity=0.050 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 401 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~ 401 (1167)
+...++|..|+..|-++|. ++|.....|.+-+..+.+.++++.+..-..|++...|+.....+.++.++...
T Consensus 20 ~f~~k~y~~ai~~y~raI~--------~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--------INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred ccchhhhchHHHHHHHHHh--------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 4456778888888888887 66666777888888777888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhhh----ccChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 402 GSMDLAHNALARATHVFV----KRLPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~----p~~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
..+++|+.+|.||..+.- +.-..++..+-....+.=+..+.+.+
T Consensus 92 ~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred ccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 888888888888855431 11234555544443333333333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=5.2 Score=47.82 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAF 125 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~ 125 (1167)
.-|..|+...... =+++-||++|.+.
T Consensus 586 ~DW~~LA~~ALeA--L~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 586 TDWRELAMEALEA--LDFETARKAYIRV 611 (1081)
T ss_pred chHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 3477777765442 3677788887776
|
|
| >PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.14 Score=49.99 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEeccCCC
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNT 1112 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r~~~ 1112 (1167)
.+|-+.|..||.+.-+++ + .+.-.|+|.+-.+|.+|+..+|..++|+.|+|..+.+..
T Consensus 51 ~~ll~~~~~~GevvLvRf-v--------~~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRF-V--------GDTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEE-E--------TTCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEE-e--------CCeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 367788999999865432 2 146799999999999999999999999999999887654
|
; PDB: 1UFW_A 2DNR_A. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.3 Score=46.79 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
.++.+|.+++...|++-++++.....+..+ |.+...++..|......-+.++|+.-|.++ ++++|....+..+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~v-L~ldpslasvVsr 303 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKV-LELDPSLASVVSR 303 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHH-HhcChhhHHHHHH
Confidence 378899999998899999998888888877 889999999999999999999999999998 8999987766543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.75 E-value=2 Score=44.46 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACAN---YPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~---~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
...|..+++++.+.||.+.|++.|.++...|.. ..++++..+.+....+++..+...+.++-...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988743 34688888887777889988888888887654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.70 E-value=53 Score=47.76 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---h-CCHH---HHHHHHHHHHhhcC
Q 001064 458 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---S-RNAE---KARQILVDSLDHVQ 530 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~-g~~~---~Ar~i~~kal~~~p 530 (1167)
.+.+...+.|..++|+.++|-..|..|+++..+ .+..|..||.++... . ++.. .|...|-+|....-
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~------l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~ 2885 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDG------LGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN 2885 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc
Confidence 345677888999999999999999999999843 367888888887653 1 2233 44554555555442
Q ss_pred CC--HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHH---HhhCCHHHHHHHHHHH
Q 001064 531 LS--KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL---GLFGDAQLIKKAEDRH 605 (1167)
Q Consensus 531 ~~--~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe---~~~Gd~~~~~~v~~r~ 605 (1167)
.+ ..+.-...++....... .-+-+.|++.+..-+-. -|--|+=-+ ..+++-..+.-+..++
T Consensus 2886 ~skaRk~iakvLwLls~dda~---~~l~~~~~k~l~~ip~~-----------~wl~~IPQLl~sLs~~e~~~~~~iL~ki 2951 (3550)
T KOG0889|consen 2886 SSKARKLIAKVLWLLSFDDSL---GTLGDVFDKFLGEIPVW-----------NWLYFIPQLLTSLSKKEAKLVRLILIKI 2951 (3550)
T ss_pred chhhHHHHHHHHHHHHhcccc---chHHHHHHHhhccCCch-----------hhhhhhHHHHhhccccchhHHHHHHHHH
Confidence 22 23333333333322221 12456677777654321 233343322 3356778888888888
Q ss_pred HhhhCC
Q 001064 606 ARLFLP 611 (1167)
Q Consensus 606 ~~~~~~ 611 (1167)
.+.+|-
T Consensus 2952 a~~yPQ 2957 (3550)
T KOG0889|consen 2952 AKSYPQ 2957 (3550)
T ss_pred HHhchH
Confidence 888875
|
|
| >KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.037 Score=58.00 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=54.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCC--------ccccc----EEEEEECCHHHHHHHHHh-CCCee
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD--------VVGVC----YAFVEFEDISGVQNAIQA-SPIQL 1098 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--------g~~kg----~afV~F~~~~~a~~Al~~-~~~~i 1098 (1167)
.-||+++||+.+...-|+++|+.||.|-.|-+. ....+ |..++ -|.|+|.+...|..+... |+..|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylq-pE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQ-PEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEec-chhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 679999999999999999999999999886432 22212 22222 267999999988887766 89999
Q ss_pred eCcE
Q 001064 1099 AGRQ 1102 (1167)
Q Consensus 1099 ~g~~ 1102 (1167)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.69 E-value=10 Score=42.43 Aligned_cols=156 Identities=14% Similarity=0.020 Sum_probs=102.0
Q ss_pred HcCChHHHHHHHHHHHHhc-CCCHH-------HHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhc------c-------Ch
Q 001064 366 RDGDFNKVVKLYERCLIAC-ANYPE-------YWIRYVLCMEASG-SMDLAHNALARATHVFVK------R-------LP 423 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~-p~~~~-------~w~~ya~~l~~~g-~~e~A~~vl~rA~~~~~p------~-------~~ 423 (1167)
+.||.+.|...|.||-... ...++ +.+..+.-+...+ ++++|...+++|.++... . ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5689999999999988764 33443 6677777677778 999999999999998521 1 22
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001064 424 EIHLFAARFKEQNGDID---GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 500 (1167)
Q Consensus 424 ~l~~~~a~~~e~~g~~~---~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l 500 (1167)
.+...++..+...+..+ +|..+++.+ ..-.|+.+.+++....+..+.++.+++.+++.+++....-. ...-..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l-~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~---e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLL-ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS---ESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc---cchHHH
Confidence 34555666666666554 355555554 44467778888777777777889999999999999876411 111223
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLD 527 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~ 527 (1167)
.++..+.+.. .+...|...+...|-
T Consensus 161 ~l~~i~~l~~--~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 161 ILHHIKQLAE--KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHHh--hCcHHHHHHHHHHHH
Confidence 3333333232 334566666666554
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.7 Score=47.73 Aligned_cols=116 Identities=9% Similarity=-0.067 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH---HHHHHHhhcCCHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH---YCIFAINTYGDPETIR 188 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~---ya~~~~~~~~~~~~Ar 188 (1167)
.+++..+..+|+.++...|.+..+-+.|++.+...|+.+.|..++...=... ..+-|.. .+.++. +..+..+.
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~-qaa~~~~~- 222 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLE-QAAATPEI- 222 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHH-HHhcCCCH-
Confidence 4677777777777777777777777777777777777777777765432221 2223333 233333 22222222
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 189 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 189 ~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
..+++.+. .|+.+..+...++..+...|+.+.|...+-.+|..
T Consensus 223 ~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22344444 33334666677777666677777776666666654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=19 Score=42.19 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=102.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH----HHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACAN----------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH----LFAA 430 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~----------~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~----~~~a 430 (1167)
.-.|++.+|+.....+..-|-. .+.+.+-.+.+-...+.++.|..-|..|++... ..++| +.+|
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~--~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE--SIDLQAFCNLNLA 411 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh--HHHHHHHHHHhHH
Confidence 3568888777666655554422 233555555555566789999999999988652 33333 3467
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGL----------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 500 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~----------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l 500 (1167)
..+.+.|+-+.-.++++.+ .|.+ ..+++.++.+...++++.+|+..+.+.|+... .++...+-..
T Consensus 412 i~YL~~~~~ed~y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman-aed~~rL~a~ 486 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN-AEDLNRLTAC 486 (629)
T ss_pred HHHHHhccHHHHHHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-hhhHHHHHHH
Confidence 7777888766666665554 3432 23578888888999999999999999999873 2221111112
Q ss_pred H-HHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 501 Y-AQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 501 ~-~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
. .-++.+. ...||-.+++++..-++++-
T Consensus 487 ~LvLLs~v~-lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 487 SLVLLSHVF-LSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHH-HHhcchHHHHhccchHHHHH
Confidence 2 2334443 35999999999999988754
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.33 Score=58.40 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=5.6
Q ss_pred HHHHHHHhhh
Q 001064 725 FVGQYYQVLQ 734 (1167)
Q Consensus 725 Fv~~YY~~l~ 734 (1167)
|-+|||.+..
T Consensus 420 ~rpqYykLIE 429 (1102)
T KOG1924|consen 420 IRPQYYKLIE 429 (1102)
T ss_pred hhHHHHHHHH
Confidence 3456666554
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.47 E-value=3.5 Score=47.84 Aligned_cols=128 Identities=9% Similarity=-0.036 Sum_probs=81.3
Q ss_pred cCCCCcccCCCCCCCc-cCCCCcccccccCCCCchHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHhhhhhhHHH
Q 001064 48 EAGNATSTENGTSLGI-ESGAAAGQELVDGSAMSGEEDRLWNI-VKANSS--------DFSAWTALLEETEKLAQDNIVK 117 (1167)
Q Consensus 48 ~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~l~~~-l~~nP~--------d~~aw~~L~~~~~~~~~~~~~~ 117 (1167)
+..+.+.|.|...++. ++-.-..+.|.. |++++|.+.|... +...|. .--.|..|+-+...+ +.+..
T Consensus 225 ~krevK~vmn~a~~s~~~l~LKsq~eY~~-gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~--~~y~~ 301 (696)
T KOG2471|consen 225 AKREVKHVMNIAQDSSMALLLKSQLEYAH-GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL--GCYQA 301 (696)
T ss_pred HHHhhhhhhhhcCCCcHHHHHHHHHHHHh-cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh--hhHHH
Confidence 3344555555444332 222222233333 6677776654321 122222 223466666665554 56777
Q ss_pred HHHHHHHHHHh-----------CC-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 118 IRRVYDAFLAE-----------FP-------LCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 118 ar~~ye~~l~~-----------~P-------~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
+..+|.++|.- -| ....+.+..+-.+...|+.-.|.++|.+++..+..++.||+..+...+
T Consensus 302 ~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 302 SSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 77888888851 11 234677788888999999999999999999999999999999999877
|
|
| >KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.09 Score=62.41 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=55.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..++||||+...++.+-++.+...||.|.++.. .. |||++|..+.....|+.. ....++|..+.+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr---~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR---DK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhh---hh-------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 478999999999999999999999999987532 21 999999999999889877 6778888776553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=22 Score=41.94 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc--ChHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAARFK 433 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~--~~~l~~~~a~~~ 433 (1167)
.+..++..+..+ ..+....+++|.+..|-++..+-..++.++++ ++...+...|.+|+..+-|+ +..+.-.|+.+-
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~ 178 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP 178 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 455666666655 66778889999999998888888899998887 78888999999998877653 344444555554
Q ss_pred HH-cCCHHHHHHHHHHHhhhcCCChHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 434 EQ-NGDIDGARAAYQLVHTETSPGLLEAIIKHA-NMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 434 e~-~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a-~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+- ..+.+.-..+..++...+.-+...+.+... .-+....|+++|+.++...++++.
T Consensus 179 ~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 179 ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDE 236 (711)
T ss_pred HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcc
Confidence 43 345666666666654444444555555555 334455789999999998888774
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.17 Score=36.31 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
.+|..++.++...|++++|.+.|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777788888888888888888888877663
|
... |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.78 Score=41.64 Aligned_cols=75 Identities=19% Similarity=0.101 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC--YGYWKKYADHEARVGSMDKVVEVYER 158 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~~~~e~A~~l~er 158 (1167)
.+..+++.++.||.|.++.+.|+..+.. .|+++.|...+-.++..+++. ...-..++++..-.|.-+-...-|+|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~--~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA--AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4566677777777777777777776665 367777777777777666554 34444444444444443333333433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.12 E-value=2.2 Score=51.62 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=115.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH---HHHHHHHH----HH---HcCCHHHHHH
Q 001064 375 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---IHLFAARF----KE---QNGDIDGARA 444 (1167)
Q Consensus 375 ~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~---l~~~~a~~----~e---~~g~~~~A~~ 444 (1167)
-+|.=+|...| .-..++..++--.||.+.++..+.++.+...-+.+- +.+.|-.+ .- ...+.+.|.+
T Consensus 178 G~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 178 GLFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 34455555543 344555565656789999999999987732111121 11111111 11 3557788999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH-HHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM-LYAQYSRFLHLVSRNAEKARQILV 523 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~-l~~~~a~~~~~~~g~~~~Ar~i~~ 523 (1167)
+++.. ....|+..-..+..+.++...|++++|+.+|++++..... .+-... .+..++..... ..++++|...|.
T Consensus 255 lL~~~-~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~---~~Ql~~l~~~El~w~~~~-~~~w~~A~~~f~ 329 (468)
T PF10300_consen 255 LLEEM-LKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE---WKQLHHLCYFELAWCHMF-QHDWEEAAEYFL 329 (468)
T ss_pred HHHHH-HHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh---HHhHHHHHHHHHHHHHHH-HchHHHHHHHHH
Confidence 99997 6779998888888999999999999999999999953321 111122 23445555444 889999999999
Q ss_pred HHHhhcCCCHHHHHHH-HHhHhhCCCh----hHHHHHHHHHHHHhh
Q 001064 524 DSLDHVQLSKPLLEAL-IHFESIQSSP----KQIDFLEQLVDKFLM 564 (1167)
Q Consensus 524 kal~~~p~~~~l~~~~-~~~e~~~~~~----~~~~~ar~l~eral~ 564 (1167)
+.++...-+..+|.-+ +-.....+.. ...+.+..+|.++-.
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999887777666411 1112222222 223667777777643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.2 Score=58.05 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=54.1
Q ss_pred ccEEEEecCCCCCCH------HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC-cE
Q 001064 1031 VKSVYVRNLPSTVTA------FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-RQ 1102 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~------~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g-~~ 1102 (1167)
-..|+|-|+|---.. .-|..+|+++|+|..+-+.+ +. .|.++||.|++|.+..+|+.|++. +|..|+- +.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~-~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPI-DE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeecc-Cc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 367899999853322 24577899999998854433 33 355999999999999999999987 7888764 44
Q ss_pred eEE
Q 001064 1103 VYI 1105 (1167)
Q Consensus 1103 l~V 1105 (1167)
..|
T Consensus 136 f~v 138 (698)
T KOG2314|consen 136 FFV 138 (698)
T ss_pred EEe
Confidence 555
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.2 Score=36.00 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 499 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 499 ~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
.+|...|..... .|++++|...|+++|+++|++
T Consensus 2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence 477888888666 999999999999999999973
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.17 Score=35.82 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 131 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~ 131 (1167)
+++.++..+.+. |+.++|++.|+++++.||+
T Consensus 2 a~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL--GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCcC
Confidence 445555555542 4555555555555555554
|
|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.49 Score=52.01 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=58.3
Q ss_pred CccEEEEecCCC----CCC-------HHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001064 1030 EVKSVYVRNLPS----TVT-------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1097 (1167)
Q Consensus 1030 ~~~~l~V~nlp~----~~t-------~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~ 1097 (1167)
..++|.++|+-. ..+ .++|++--++||.|.+|- |.++ .+.|.+-|.|.+.+.|..||+. +|..
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vv--v~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVV--VYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEE--Eecc---CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 358899999832 233 245566678999999963 4444 3679999999999999999998 7999
Q ss_pred eeCcEeEEEecc
Q 001064 1098 LAGRQVYIEERR 1109 (1167)
Q Consensus 1098 i~g~~l~V~~~r 1109 (1167)
|+||.|..+...
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999877544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.86 E-value=6.2 Score=40.77 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc--ChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 372 KVVKLYERCLIACANYPE---YWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~---~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~--~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
+.....++....++...- .-+.+|..+...+++++|...++-++...... ..-+-+.+++++.+.|.+|+|++++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444455555555444332 34555666677899999999999888642111 1234456789999999999999998
Q ss_pred HHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 447 QLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 447 ~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.. . .++.. .+-...++++...|+-++|+.-|++|++...
T Consensus 150 ~t~-~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 150 DTI-K--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred hcc-c--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 875 1 22222 2345678899999999999999999999863
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.094 Score=57.88 Aligned_cols=87 Identities=20% Similarity=0.139 Sum_probs=65.2
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 479 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 479 (1167)
..|.++.|+..|.++|++. |....+|-..+....+.++...|+.-|..+ ++++|+...-|......++-+|+++++..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A-~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFA-IEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhh-hccCcccccccchhhHHHHHhhchHHHHH
Confidence 3567788888888888776 666677777777777777777888888877 67788877776666666667788888888
Q ss_pred HHHHHHHhh
Q 001064 480 LYEQAIAIE 488 (1167)
Q Consensus 480 ~~~kAl~~~ 488 (1167)
.|+.+++++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 877777765
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.34 Score=52.47 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 174 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya 174 (1167)
+|+.++|.++|+.+|++.|+++++.+.++.+....+++-.|-.+|-++|.+.|.+.+...+-.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 478899999999999999999999999999988888899999999999999998877665543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.28 Score=34.68 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 135 YWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 135 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
+++.++.++.+.|++++|+++|++++..+|+|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57888999999999999999999999999975
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.2 Score=57.98 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 480 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~ 480 (1167)
.+.++.|...|.+||++. |++..++-..+....+.+++..|+.-+.++ ++++|.....|++.+....+++.+.+|...
T Consensus 17 ~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~ka-ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKA-IELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhh-hhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 356777777777777766 677777766666666777777777777776 677888888888888888888888888888
Q ss_pred HHHHHHhhhCC
Q 001064 481 YEQAIAIEKGK 491 (1167)
Q Consensus 481 ~~kAl~~~~~~ 491 (1167)
|++.....|++
T Consensus 95 l~~~~~l~Pnd 105 (476)
T KOG0376|consen 95 LEKVKKLAPND 105 (476)
T ss_pred HHHhhhcCcCc
Confidence 88888777643
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.5 Score=57.02 Aligned_cols=6 Identities=17% Similarity=0.623 Sum_probs=2.8
Q ss_pred cEEEEe
Q 001064 1032 KSVYVR 1037 (1167)
Q Consensus 1032 ~~l~V~ 1037 (1167)
...||+
T Consensus 642 ~cFWvk 647 (1102)
T KOG1924|consen 642 NCFWVK 647 (1102)
T ss_pred cceeee
Confidence 344554
|
|
| >TIGR02246 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.7 Score=41.94 Aligned_cols=111 Identities=10% Similarity=0.122 Sum_probs=63.6
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeeccccCCCceEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLVMVS 799 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q~~~~~~i~v~v~ 799 (1167)
...+..|+..++ .+++.|..+|.+++.+....|....|...|.+..+.+...... .+.++.....-..++..++.+.
T Consensus 7 ~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~~~ 86 (128)
T TIGR02246 7 RALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVHAI 86 (128)
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEEEE
Confidence 467889999988 5899999999999877644555445555554433333332222 2344333333222233444333
Q ss_pred EEEEecCccc---cceeEEEEEEeeeCCeEEEEcceE
Q 001064 800 GSVKTKEFCR---RRKFVQTFFLAPQEKGYFVLNDIF 833 (1167)
Q Consensus 800 G~~~~~~~~~---~~~F~q~F~L~~~~~~y~v~nd~f 833 (1167)
..+...+... .....-+|++...+++|.|..|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~ 123 (128)
T TIGR02246 87 QTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHN 123 (128)
T ss_pred EEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccC
Confidence 3344433211 123455667778889999998865
|
This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.039 Score=66.03 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~ 400 (1167)
+...++|+.+. .|..--+..+.-....|..+++..-+.+++|.+
T Consensus 60 Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 60 AINAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 34445555432 222211223333344466666666777776655
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.3 Score=57.59 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCceeeeEeee--cCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVR--NRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~--~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++.-+++||.|++|.|... +....-+-|..||+|.+.+++++|.+. .|..|+||.|...+-
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 456777789999999765332 122233457789999999999999988 799999999887653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.97 E-value=40 Score=41.91 Aligned_cols=76 Identities=8% Similarity=0.054 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001064 138 KYADHEARVGSMDKVVEVYERAVQGVTY--SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 215 (1167)
Q Consensus 138 ~~a~~e~~~~~~e~A~~l~eraL~~~P~--s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e 215 (1167)
..++|.++.+.|++|..+-+..-...|. -.++|..|+..++ ..++++.|-...-+.+. . ....|.....-.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl-~~~~y~~Aas~~p~m~g---n---~~~eWe~~V~~f 433 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLL-FEGKYDEAASLCPKMLG---N---NAAEWELWVFKF 433 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHH-hcchHHHHHhhhHHHhc---c---hHHHHHHHHHHh
Confidence 3577888889999998876554444332 3579999999998 77899888877766664 3 245677666655
Q ss_pred HHhhh
Q 001064 216 YMQQE 220 (1167)
Q Consensus 216 ~~~~~ 220 (1167)
.+.++
T Consensus 434 ~e~~~ 438 (846)
T KOG2066|consen 434 AELDQ 438 (846)
T ss_pred ccccc
Confidence 55444
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.39 Score=52.01 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=31.7
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 462 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~ 462 (1167)
+.|+.++|..+|+.|+.+. |.++++.+.++.|.+..+++-+|..+|-++ +.+.|.+.+++.
T Consensus 128 ~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A-LtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKA-LTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhhee-eeeCCCchHHHh
Confidence 3455555555555555544 455555555555555555555555555555 445555554443
|
|
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.18 Score=55.61 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=59.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCC-ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
...|-+++||+.++.++|-++|+.|.. |+.-+|.+.-+..|+..|-|||+|.+.+++..|... +...+.+|.|.|...
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 367889999999999999999998864 443122222344588999999999999999998877 445556788888644
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.1 Score=57.61 Aligned_cols=115 Identities=12% Similarity=-0.017 Sum_probs=73.5
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH--HHHHHHHHHHhhcCCHHHHH
Q 001064 111 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD--IWLHYCIFAINTYGDPETIR 188 (1167)
Q Consensus 111 ~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~--lw~~ya~~~~~~~~~~~~Ar 188 (1167)
.+|.++.|+..|-+++.+.|....++.+-+.+.++.+....|++=|..++.++|++.. -|..|+.-+ +|+.++++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl---lg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL---LGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH---hhchHHHH
Confidence 3567777778888888888877777777777777777777788778888877776533 344444443 36777777
Q ss_pred HHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 189 RLFERGLAYVGTDYL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 189 ~~feral~~~g~d~~-s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
..|..+++ .|+. ...-|..= ..-..+.++.=++.|+|.++
T Consensus 203 ~dl~~a~k---ld~dE~~~a~lKe--V~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACK---LDYDEANSATLKE--VFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHh---ccccHHHHHHHHH--hccchhhhhhchhHHHHHHH
Confidence 77777776 3332 12233332 22334455555666666655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.27 Score=36.04 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001064 135 YWKKYADHEARVGSMDKVVEVYERAVQG 162 (1167)
Q Consensus 135 ~W~~~a~~e~~~~~~e~A~~l~eraL~~ 162 (1167)
.|..++.++.+.|++++|+++|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999997654
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.9 Score=49.30 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=105.4
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CC---HHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV-GS---MDKVV 153 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~-~~---~e~A~ 153 (1167)
-++.++.....+|+.||+++.+|....-.+++....++..=.++.+++|+.+|-|+..|..---+..+. .. ..+=.
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 578899999999999999999999999999876556688888999999999999999885433222221 11 34456
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhh-----cC---CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINT-----YG---DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 218 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~-----~~---~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~ 218 (1167)
+...+++..++.|...|.+-..++... .| ..+....-+++....+=+|+.+...|.- ..|++..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY-~rWLl~~ 241 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY-HRWLLGR 241 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee-hHHhhcc
Confidence 778888888888999997665555421 23 2556677788888877788888788876 5566654
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.051 Score=65.14 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=7.7
Q ss_pred HhHHHHHHHHhhh
Q 001064 722 GSYFVGQYYQVLQ 734 (1167)
Q Consensus 722 g~~Fv~~YY~~l~ 734 (1167)
+..++...|++|-
T Consensus 304 ~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 304 ARQLLPSIFQLLK 316 (556)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666653
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=11 Score=39.01 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLL--E--AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~--~--~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
+..|..+...+++++|...++.++ . .|.+. . +-++++.+...+|.+|+|..+++..-... -.+.+..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l-~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-------w~~~~~e 163 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQAL-A-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-------WAAIVAE 163 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH-c-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-------HHHHHHH
Confidence 345666778899999999999873 2 33322 2 24677777888899999988876433221 1123344
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
--++++.. .|+.++||+-|++|++..+++
T Consensus 164 lrGDill~-kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 164 LRGDILLA-KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HhhhHHHH-cCchHHHHHHHHHHHHccCCh
Confidence 55788765 999999999999999987443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.2 Score=51.39 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=90.2
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK-- 489 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--------~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~-- 489 (1167)
.+.+...+..+.++...|++.+|.+++...-+...|+ .+..|..++-+..++|.+.-+..+|.+||....
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 4677788888999999999999999988764444454 334578888888899999999999999996211
Q ss_pred ---C----CC---ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001064 490 ---G----KE---HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 541 (1167)
Q Consensus 490 ---~----~~---~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~ 541 (1167)
+ +- .....-+|..+.+-.+. ..|+...|...|.++.+.+-.++.+|..++.
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 00 00111235555665544 4999999999999999999999999987664
|
|
| >PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.1 Score=42.77 Aligned_cols=111 Identities=9% Similarity=0.092 Sum_probs=67.4
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcC-CcccchhchHHHHHHHhc-CCCcceeEeeeeccccCCCceEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDG-DSTESASSMLDIHSLVIS-LNFTAIEIKTINSLGSWNGGVLVMVS 799 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g-~~~~~~~~~~~i~~~~~~-l~~~~~~i~~~d~q~~~~~~i~v~v~ 799 (1167)
..++++|++.+. .+-+.|..+|.++.+++..+. ....|...+.+..+.... ++.-.+.+..+..+.. ++.++|...
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~a~~~~~ 80 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVS-GDVAVVTGE 80 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEEC-CCEEEEEEE
Confidence 367899999887 677999999998866653222 233455555443333222 2211234444555542 344555555
Q ss_pred EEEEe--cCccccceeEEEEEEeeeCCeEEEEcceEE
Q 001064 800 GSVKT--KEFCRRRKFVQTFFLAPQEKGYFVLNDIFH 834 (1167)
Q Consensus 800 G~~~~--~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr 834 (1167)
+.+.. ++......+..||++...+++|-|.+.-+.
T Consensus 81 ~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~S 117 (121)
T PF13474_consen 81 FRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHWS 117 (121)
T ss_dssp EEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEec
Confidence 55543 333345678999999999999999886553
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.3 Score=56.57 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=88.5
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
+.++++.|+.+|-++|..+|++..+|-.-+..+.+.+++..|+.-+.+|++.. |.....|+..|......+.+.+|+..
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHHHH
Confidence 45689999999999999999999999998888888999999999999999987 88889999999999999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHH
Q 001064 446 YQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
|+.. ..+.|+...+.......
T Consensus 95 l~~~-~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 95 LEKV-KKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHh-hhcCcCcHHHHHHHHHH
Confidence 9997 78899988776554433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.54 Score=33.58 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.+|+..+.++..+|++++|...|++++++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566666777777777777777777777664
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.81 E-value=7 Score=41.98 Aligned_cols=194 Identities=16% Similarity=0.201 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHH-HHHHHHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTEL----ENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE-YWIRYVL 396 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~----~~W~~y~~~~e~~g~~~~a~~~yeral~~~-----p~~~~-~w~~ya~ 396 (1167)
+.++|+..|++.+. +++... .+....+...-+.+++++.+..|.+.|... .++.+ ......+
T Consensus 42 ~p~~Al~sF~kVle--------lEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlD 113 (440)
T KOG1464|consen 42 EPKEALSSFQKVLE--------LEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILD 113 (440)
T ss_pred CHHHHHHHHHHHHh--------cccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 56678888888887 543322 233445666667899999988888877542 23433 3333334
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhh-ccChHHHHH----HHHHHHHcCCHHHHHHHHHHHhhhcC-----------CChHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFV-KRLPEIHLF----AARFKEQNGDIDGARAAYQLVHTETS-----------PGLLEA 460 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~-p~~~~l~~~----~a~~~e~~g~~~~A~~~~~~a~~~~~-----------P~~~~~ 460 (1167)
+.....+++-..+.|+..+.... .++..+|+. ++.++...+++.+-.+++.+++.... ...+++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 44445566666666666655431 346677764 56666667777777777776532211 123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 461 IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 461 ~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
|-.-+.++..+.+-.+...+|+++|.+...--|...+..+-..=+.+..+ .|.+++|-.-|=.|++..
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlr-eg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLR-EGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccc-cchHHHHHhHHHHHHhcc
Confidence 66666777778888999999999998763211111111111222333333 778888887777777754
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.77 E-value=59 Score=41.60 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=58.6
Q ss_pred CCc-hHHHHHHHHHHhCC---CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001064 78 AMS-GEEDRLWNIVKANS---SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 78 ~~~-~a~~~l~~~l~~nP---~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
+++ +-++.|++.+-.|. .+.+.-..|+...-+ -+..+...+.+++=..+-. ..+.+.+..+-+++|.
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik---ad~trVm~YI~rLdnyDa~------~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK---ADRTRVMEYINRLDNYDAP------DIAEIAIENQLYEEAF 1068 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh---cChHHHHHHHHHhccCCch------hHHHHHhhhhHHHHHH
Confidence 344 44566667665442 222322233333332 1333444444444222211 2355555555566666
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 231 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~ 231 (1167)
.+|.+. ++....++.+++..++.|.|-+.-+|.- .+.+|...+..-+..+....|+.-|-++
T Consensus 1069 ~ifkkf--------~~n~~A~~VLie~i~~ldRA~efAe~~n--------~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1069 AIFKKF--------DMNVSAIQVLIENIGSLDRAYEFAERCN--------EPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHh--------cccHHHHHHHHHHhhhHHHHHHHHHhhC--------ChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 666543 1222333444444444444433333222 2356666666666556666666666554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.47 E-value=43 Score=39.57 Aligned_cols=182 Identities=14% Similarity=-0.022 Sum_probs=116.2
Q ss_pred CCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH
Q 001064 347 KPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 426 (1167)
Q Consensus 347 ~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~ 426 (1167)
.|+|..++ ..+++..-.+-...-+..+..|.|.. ..+...++.+++++... ..+.-..+++|.++.+ =+...+-
T Consensus 62 ~~l~d~~l---~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ 135 (711)
T COG1747 62 QLLDDSCL---VTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIG 135 (711)
T ss_pred ccccchHH---HHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHH
Confidence 34665433 34444443444455667788888877 56667788888888766 4566778899888866 5566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 501 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~ 501 (1167)
-.++..+++ ++...+...|.+++-+..|. --++|-+...+ --.+.|....+..+.-.... .....+.
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg-----~~~~~Vl 207 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLG-----EGRGSVL 207 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhc-----cchHHHH
Confidence 778888887 88889999999986555552 33456665543 23456666655554433331 1223344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 502 AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 502 ~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
.+...-.|....|+++|.+|+.-.|+++-.+.......+.+
T Consensus 208 ~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 208 MQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 44443334556799999999999999987655444444443
|
|
| >KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.43 Score=53.09 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=57.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEee--ecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEE
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV--RNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1106 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~ 1106 (1167)
..|-|.||.+.+|.+++..+|...|.|..+.+.- .+..-....-.|||.|.|..++..|-.+..+.|-|+.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 4889999999999999999999999999876532 12111223347999999999999887775666667766664
|
|
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.38 E-value=2.5 Score=46.92 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=62.7
Q ss_pred CccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++.-+.|.+|... +.-+.|-.+|..||.|.+|+. ++.+ .|-|.|++.|..++++|+.. |+..+-|.+|.|..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkF-mkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKF-MKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEE-eecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 5789999999865 677889999999999999764 4333 37899999999999999987 78888888899887
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
.+.
T Consensus 360 SkQ 362 (494)
T KOG1456|consen 360 SKQ 362 (494)
T ss_pred ccc
Confidence 764
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.34 E-value=10 Score=45.14 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=95.9
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----c----------------cChHHHHH---HHHHHHHcCCH
Q 001064 383 ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV----K----------------RLPEIHLF---AARFKEQNGDI 439 (1167)
Q Consensus 383 ~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~----p----------------~~~~l~~~---~a~~~e~~g~~ 439 (1167)
..|.+.+-.+.++.+...+|+.+.|..+.+|++=.+. | .+-.+|+. +-..+.+.|=+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 3478888999999999999999998888888864432 1 12233332 34456677888
Q ss_pred HHHHHHHHHHhhhcCCC-hHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC--CH
Q 001064 440 DGARAAYQLVHTETSPG-LLEAIIKHANM-ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR--NA 515 (1167)
Q Consensus 440 ~~A~~~~~~a~~~~~P~-~~~~~~~~a~~-e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g--~~ 515 (1167)
.-|.+.++-+ +.++|. ++-..+..+++ ..|..+|.=.+.+++..-....- ...+.. ..-..+++|+....- +.
T Consensus 359 rTA~E~cKll-lsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l-~~~PN~-~yS~AlA~f~l~~~~~~~r 435 (665)
T KOG2422|consen 359 RTALEWCKLL-LSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL-SQLPNF-GYSLALARFFLRKNEEDDR 435 (665)
T ss_pred HHHHHHHHHH-hhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH-hhcCCc-hHHHHHHHHHHhcCChhhH
Confidence 8888888776 789998 76665555554 45667777777777655222110 001111 123567777555222 36
Q ss_pred HHHHHHHHHHHhhcCC
Q 001064 516 EKARQILVDSLDHVQL 531 (1167)
Q Consensus 516 ~~Ar~i~~kal~~~p~ 531 (1167)
..|+..+.+|+.++|.
T Consensus 436 qsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 436 QSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHHHHHhCcH
Confidence 8899999999999984
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.24 E-value=10 Score=42.20 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
+.-|.+.++|..|+..|.++|+ .++-|++ +.-++.+-+....-.|++..++.-..+++...|.+...+++=|.+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk-----~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLK-----KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHh-----hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 4456667777777777777776 2333432 222344444444445667777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 001064 398 MEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+..+..+.+|.+..+..+.+.
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 766666666666666555443
|
|
| >KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.41 Score=50.56 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=61.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C----CCeeeCcEeEEE
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S----PIQLAGRQVYIE 1106 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~----~~~i~g~~l~V~ 1106 (1167)
..|||.||...++-+.+.+.|+.||+|...-+.+.++ +++-+=++|+|...-.+.+|+.. + +....++.+-|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r--~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR--GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc--ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 6899999999999999999999999998754444443 56777889999999888888866 2 456667777777
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
....
T Consensus 110 P~eq 113 (275)
T KOG0115|consen 110 PMEQ 113 (275)
T ss_pred hhhc
Confidence 5543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=89.82 E-value=4.3 Score=43.40 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 458 LEAIIKHANMERRLGNL-------EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~~-------e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
+.++++.+.+++.+|+. ..|...|+++++.............+..-+|.+.++ .|++++|.+.|.+.+...-
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcCCC
Confidence 34566666777666764 445555666665543211111223455556777666 9999999999999997654
Q ss_pred CCH
Q 001064 531 LSK 533 (1167)
Q Consensus 531 ~~~ 533 (1167)
.+.
T Consensus 197 ~s~ 199 (214)
T PF09986_consen 197 ASK 199 (214)
T ss_pred CCC
Confidence 443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.37 E-value=4.4 Score=48.35 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=76.4
Q ss_pred cCChHHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 367 DGDFNKVVKLYE--RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 367 ~g~~~~a~~~ye--ral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
.+|++.++...+ +.+...| .+...+.+.||++.|..+.|+.+- .+++..+. +..+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFe---LAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV---------TDPDHRFE---LALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHHHHH---HHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CChHHHhH---HHHhcCCHHHHHH
Confidence 467777666554 2221222 456778888899888887776433 23444443 3357899988887
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 524 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~k 524 (1167)
+.+ .-++...|.++++...++|+++-|..+|.++=... .+ .|++...|+.+.-+++-+.
T Consensus 340 ~a~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~--------------~L-~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 340 IAK------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS--------------GL-LLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HCC------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH--------------HH-HHHHHHCT-HHHHHHHHHH
T ss_pred HHH------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc--------------cc-HHHHHHhCCHHHHHHHHHH
Confidence 633 23367789999999999999999998888764433 11 2234458888887777777
Q ss_pred HHhhc
Q 001064 525 SLDHV 529 (1167)
Q Consensus 525 al~~~ 529 (1167)
|.+..
T Consensus 399 a~~~~ 403 (443)
T PF04053_consen 399 AEERG 403 (443)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 66544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.21 E-value=71 Score=40.20 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=98.5
Q ss_pred HHHHHHHHHHH---------HcCChHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHH---
Q 001064 355 ENWHNYLDFIE---------RDGDFNKVVKLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALAR--- 413 (1167)
Q Consensus 355 ~~W~~y~~~~e---------~~g~~~~a~~~yeral~~~p---------~~~~~w~~ya~~l~~~g~~e~A~~vl~r--- 413 (1167)
..|..++.++. -.+++..+....+.....+. ..+-+++-.|.+....|+.+.|...|.+
T Consensus 353 ~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~ 432 (608)
T PF10345_consen 353 IQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRF 432 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHH
Confidence 46777665542 34788888888877666542 2355777777778888999999999982
Q ss_pred ----HHHhhhccChHHHHHHH----HHHHHcC--CHHH--HHHHHHHHhhhc--CCC--hHHHHHHHHHHHHHc---CCH
Q 001064 414 ----ATHVFVKRLPEIHLFAA----RFKEQNG--DIDG--ARAAYQLVHTET--SPG--LLEAIIKHANMERRL---GNL 474 (1167)
Q Consensus 414 ----A~~~~~p~~~~l~~~~a----~~~e~~g--~~~~--A~~~~~~a~~~~--~P~--~~~~~~~~a~~e~r~---g~~ 474 (1167)
..... ....+++++.+ .++...+ +..+ +..+++++ ... +.. +...|......-... -.+
T Consensus 433 ~~~~~~~~~-~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i-~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 510 (608)
T PF10345_consen 433 LLCEAANRK-SKFRELYILAALNLAIILQYESSRDDSESELNELLEQI-EPLCSNSPNSYNRTAYCLVLATYNTFEPFSS 510 (608)
T ss_pred hhhhhhccC-CcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhc-CccccCCccHHHHHHHHHHHHHHhhCCcccc
Confidence 22222 23445555532 2222222 2222 55666653 111 111 222333332221221 233
Q ss_pred HHHHHHHHHHHHhh-hCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC----HHHHH
Q 001064 475 EDAFSLYEQAIAIE-KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS----KPLLE 537 (1167)
Q Consensus 475 e~A~~~~~kAl~~~-~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~----~~l~~ 537 (1167)
.++...+..+++.. ..-.. ...-.+...++...+. .|+..+..++..+++..-... ..+|.
T Consensus 511 ne~k~~l~~~L~~~~~~~~n-~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 511 NEAKRHLQEALKMANNKLGN-SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 58888888888876 22111 1112233445444443 789999888888888755443 35663
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.01 E-value=7.5 Score=46.82 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=57.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
.+.+-+++.+++.+..+++++|... .|.++++ ..++..+...|-++|+|....++++|+..|...+-.|.+.|....
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l-~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDL-SENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccch-hhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 4667788999999999999999633 2444443 223333334689999999999999999998888888888876543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=88.85 E-value=3.8 Score=37.18 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 119 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 119 r~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
...+++.++.+|++....+.++..++..|+++.|.+.+-.+++.++..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 456788999999999999999999999999999999999999887544
|
|
| >KOG1996 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.81 E-value=1 Score=48.18 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++...++||.|..|-|+......-.-----||+|+..+++-+|+-. ||..|+||.++..|
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 466778889999999866554322111223579999999999999866 89999999887654
|
|
| >KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.44 Score=58.65 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=62.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
..+.++||+|+.++....|...|..||.|..|++ +. +--|++|.+++...++.|+.. .|.-|+| +.++|.
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeec--cc-----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 5689999999999999999999999999997543 22 335999999999999999976 6888887 558898
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
++.+
T Consensus 527 la~~ 530 (975)
T KOG0112|consen 527 LASP 530 (975)
T ss_pred cccC
Confidence 7763
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.88 Score=33.28 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
+|..++.++.++|++++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36778889999999999999999977655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.40 E-value=7 Score=43.22 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY 197 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~ 197 (1167)
....++++.+...++++.+.+.+++.+..+|.+..+|......++ ..|+...|+..|+++-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 345667788888899999999999999999999999999999999 789999999999987763
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.03 E-value=30 Score=37.40 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001064 113 DNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG 162 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~ 162 (1167)
.+.++|.+.|++.|++.+... .+.+..+.+..+++++++..+.|.++|..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 466778888888888877653 34456677778888888888888887754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.83 E-value=5.8 Score=41.06 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001064 425 IHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 501 (1167)
Q Consensus 425 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~ 501 (1167)
.|..++.++.+.|++++|++.|.++ .+..-. -.++++..+.+..-.+++..+...+.+|-.....-.++.....+-
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3444555555555555555555554 221111 234455555555556666666666666665543211111111121
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 502 AQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 502 ~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
..-|-. ....+++.+|-+.|-.++..+.
T Consensus 117 ~~~gL~-~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLA-NLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHH-HHHhchHHHHHHHHHccCcCCC
Confidence 112222 2247889999888887765543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.81 E-value=0.62 Score=48.72 Aligned_cols=54 Identities=19% Similarity=0.416 Sum_probs=26.5
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.+|.+.|.++|.++ +++.|....-|++.+.+.++.|+++.|...|++.++++|
T Consensus 7 ~~~D~~aaaely~qa-l~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 7 ESGDAEAAAELYNQA-LELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred ccCChHHHHHHHHHH-hhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 344444444455554 444444444455555554455555555555555554444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.80 E-value=19 Score=43.15 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
-...+.|+++.|-.+.|+ .. ..+++.-+.+|. +.|+++.|.++.+. -+++..|-.+++....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL-------~~-~~D~~~rFeLAl---~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELAL-------QF-VTDPDHRFELAL---QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHTT-HHHHH-------HH-SS-HHHHHHHHH---HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHH-------hh-cCChHHHhHHHH---hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHc
Confidence 566778888888666554 44 456777777664 67999988765522 24678999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 516 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~ 516 (1167)
|+++-|..+|.++ .. |-++..++.-.|+.+...++.+.|..... +-..+..+ + ..|+++
T Consensus 361 g~~~lAe~c~~k~-~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----------~n~af~~~-~-~lgd~~ 419 (443)
T PF04053_consen 361 GNIELAEECYQKA-KD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD----------INIAFQAA-L-LLGDVE 419 (443)
T ss_dssp TBHHHHHHHHHHC-T---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----------HHHHHHHH-H-HHT-HH
T ss_pred CCHHHHHHHHHhh-cC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC----------HHHHHHHH-H-HcCCHH
Confidence 9999999999996 22 22333455568999888888887776542 11222222 1 278899
Q ss_pred HHHHHHHHH
Q 001064 517 KARQILVDS 525 (1167)
Q Consensus 517 ~Ar~i~~ka 525 (1167)
+..+++.++
T Consensus 420 ~cv~lL~~~ 428 (443)
T PF04053_consen 420 ECVDLLIET 428 (443)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 988888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.97 Score=30.67 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
..|..++..+...++++.|+..|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45777777777778888888888887776653
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.24 E-value=3.1 Score=41.68 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCCceeeeEeee
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVR 1066 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~ 1066 (1167)
++|-.+=+-||.|.++.+.|+
T Consensus 89 ~qIGKVDEIfG~i~d~~fsIK 109 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVHFSIK 109 (215)
T ss_pred hhhcchhhhcccccccEEEEe
Confidence 333333344777777655443
|
|
| >KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=86.66 E-value=2 Score=50.53 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=59.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHh-cCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee---eCcEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL---AGRQV 1103 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i---~g~~l 1103 (1167)
.....|||.||-.-.|.-.|+.++. .+|.|... +| | +-|..|||.|.+.++|.+.+.+ +|+.. |++.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3568999999999999999999998 67777763 45 3 2467899999999999988877 67654 56778
Q ss_pred EEEecc
Q 001064 1104 YIEERR 1109 (1167)
Q Consensus 1104 ~V~~~r 1109 (1167)
.|+|.+
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 888765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.00 E-value=1.2e+02 Score=39.16 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
++++|-..-++. +.+..|-.++....+.+....|++-|-|+ +++.-+..-++... +.|.+++..+.+..
T Consensus 1090 ~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~-~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1090 SLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVAS-RTGKYEDLVKYLLM 1158 (1666)
T ss_pred hHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 444444444433 34567777777777777777777666544 23333444444444 45666666555555
Q ss_pred HHHhcCCCCCCHHHHHHHHH
Q 001064 194 GLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~ 213 (1167)
|-+..........|...|++
T Consensus 1159 aRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHhhcCccchHHHHHHHHH
Confidence 55544333333445555554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.81 E-value=16 Score=38.24 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001064 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515 (1167)
Q Consensus 436 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 515 (1167)
.|| ++|+..|-++...-.=+.+++.+.+|.++.+. |.++++.+|-++|++....+ ..+|+++..++.+.+. .|++
T Consensus 120 ~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~-~~~~ 194 (203)
T PF11207_consen 120 FGD-QEALRRFLQLEGTPELETAELQYALATYYTKR-DPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQK-LKNY 194 (203)
T ss_pred cCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH-hcch
Confidence 354 67777777652222224678888888888754 78999999999999986542 3458899999999776 8888
Q ss_pred HHHH
Q 001064 516 EKAR 519 (1167)
Q Consensus 516 ~~Ar 519 (1167)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.75 E-value=1.1e+02 Score=38.79 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=76.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 001064 139 YADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEY 216 (1167)
Q Consensus 139 ~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~--~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~ 216 (1167)
+...+.+.|++++|..++.++- +..+..-..+.+.++...+ -+..++...-+++-...+.++....-+..|+.|+.
T Consensus 713 LL~sy~~~g~~erA~glwnK~Q--V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~ 790 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQ--VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFAT 790 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCc--CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHh
Confidence 4456677888999999999887 3355566667777766332 25567888888888877777677788999999999
Q ss_pred HhhhHHHHHHHHHHHHhc-chhhHHHH
Q 001064 217 MQQEWSRVAMIYTRILEN-PIQQLDRY 242 (1167)
Q Consensus 217 ~~~~~~~A~~iy~r~l~~-p~~~~~~~ 242 (1167)
..++.+.|.++|+|.-+. ++.+.+.+
T Consensus 791 q~~qkkaAkk~f~r~eeq~~v~tad~l 817 (1088)
T KOG4318|consen 791 QTEQKKAAKKCFERLEEQLTVSTADEL 817 (1088)
T ss_pred hHHHHHHHHHHHHHHHHccCCCcHHHH
Confidence 888888999999998875 44444443
|
|
| >PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=85.47 E-value=4.1 Score=33.90 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=40.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcC----CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNF----GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
..|+|.|+. +++.++|+.+|..| ++. .|. ++ |.. -+=|.|.+.+.|.+||.+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IE-WI-dDt------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIE-WI-DDT------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEE-Ee-cCC------cEEEEECCHHHHHHHHHc
Confidence 679999996 68889999999988 543 333 34 432 477999999999999864
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=85.34 E-value=28 Score=40.56 Aligned_cols=139 Identities=15% Similarity=0.057 Sum_probs=91.4
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------------------------CCCHH---HHHHHHHHHHHc
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------------------------ANYPE---YWIRYVLCMEAS 401 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~--------------------------p~~~~---~w~~ya~~l~~~ 401 (1167)
|-.++........+..+|+...|..+.||||-.+ +.+-. +.++|+..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 3346677788888888888776555555554321 01112 556777888889
Q ss_pred CCHHHHHHHHHHHHHhhhccChHHHHHHHH-HHHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCH--
Q 001064 402 GSMDLAHNALARATHVFVKRLPEIHLFAAR-FKEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNL-- 474 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~-~~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~-- 474 (1167)
|-+..|.++.+-.+.+.+..+|---+.+.+ +..+.++++=-+.+++........+ .+.+-+..+.....+++-
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~ 196 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEES 196 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccc
Confidence 999999999999999885546654444444 4456788887777777642211111 112345555555566666
Q ss_pred -------------HHHHHHHHHHHHhhh
Q 001064 475 -------------EDAFSLYEQAIAIEK 489 (1167)
Q Consensus 475 -------------e~A~~~~~kAl~~~~ 489 (1167)
+.|...+.+|+..+|
T Consensus 197 ~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 197 SQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred cccccccccccchhHHHHHHHHHHHHhH
Confidence 899999999999985
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.31 E-value=3.4 Score=45.87 Aligned_cols=92 Identities=14% Similarity=0.045 Sum_probs=62.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 472 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 472 (1167)
..+.+..++..|+..|.++|+...++ +..+|...|....-.|++-.|+.-..++ +.++|.+...+++-+.....+.
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a-l~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA-LKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhhhhhhHHHHHHH
Confidence 33334445555666666666544322 2344555555556677888888888887 7889999999998888888888
Q ss_pred CHHHHHHHHHHHHHhh
Q 001064 473 NLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 473 ~~e~A~~~~~kAl~~~ 488 (1167)
.++.|....+..+.+.
T Consensus 168 ~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHhhhhhhh
Confidence 8888888777776654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.92 E-value=1.3 Score=46.54 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=47.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 421 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~ 421 (1167)
.+.+|.+.+..+|.|+|..-|....-|++++.+.++.|+++.|...|++.+++.+++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 356788888889999998888888889999988888899998888898888887544
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.75 E-value=33 Score=41.17 Aligned_cols=142 Identities=12% Similarity=0.028 Sum_probs=89.3
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--------h------------cCCChH---HHHHHHHHHHHHcCCHHH
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHT--------E------------TSPGLL---EAIIKHANMERRLGNLED 476 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~--------~------------~~P~~~---~~~~~~a~~e~r~g~~e~ 476 (1167)
|-...-.++.+++-..+|+.+-|..+.+|++- . +.|.|- .+.++++..+.+.|-...
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 44566778889999999999998888887521 0 122222 235777888889999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----HhhcCCCHHHHHHHHHhHhhCCChhH
Q 001064 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS-----LDHVQLSKPLLEALIHFESIQSSPKQ 551 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka-----l~~~p~~~~l~~~~~~~e~~~~~~~~ 551 (1167)
|.+..+-.++++|..+ |.....+.+++.....+|.=-+.+++.. |...|+ ..+-.+++.|-+...++..
T Consensus 361 A~E~cKlllsLdp~eD-----Pl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~ 434 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSED-----PLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDD 434 (665)
T ss_pred HHHHHHHHhhcCCcCC-----chhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhh
Confidence 9999999999987532 3333334444333344555555555544 233343 2333467777777655443
Q ss_pred HHHHHHHHHHHhhcCC
Q 001064 552 IDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 552 ~~~ar~l~eral~~~~ 567 (1167)
...++.++.+|+...|
T Consensus 435 rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 435 RQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 4556667777766554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.27 E-value=4.6 Score=44.06 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHhCCCCHHHH----------------HHHHHHHHHhCCHHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAF-LAEFPLCYGYW----------------KKYADHEARVGSMDKVVEVYER 158 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~-l~~~P~~~~~W----------------~~~a~~e~~~~~~e~A~~l~er 158 (1167)
|+.-|..+++-..... ..+++++++.... =..+|...-.| .+.+..+...|.+.+|.++.+|
T Consensus 226 Dv~e~es~~rqi~~in-ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 226 DVQEYESLARQIEAIN-LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred cHHHHHHHhhhhhccc-cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6777777777665532 4445544433332 12224433333 2345566677888888888888
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 159 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 159 aL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
+|..+|.+...|..+.+.+. ..||-=.+...|+|
T Consensus 305 ~ltldpL~e~~nk~lm~~la-~~gD~is~~khyer 338 (361)
T COG3947 305 ALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYER 338 (361)
T ss_pred HhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHH
Confidence 88888888888888887777 56664445455444
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.75 E-value=19 Score=40.03 Aligned_cols=118 Identities=11% Similarity=0.113 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHhhcC----
Q 001064 112 QDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGV---TYSVDIWLHYCIFAINTYG---- 182 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~---P~s~~lw~~ya~~~~~~~~---- 182 (1167)
+.++++.-+..+.+-+-.-. -.++|++.++.+.+.++.+.|.+.|.+..... ....|+.++.+++-+ ..+
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlgl-fy~D~~l 159 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGL-FYLDHDL 159 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH-hhccHHH
Confidence 45566666666666665322 24899999999999999999988887766532 356677666666554 333
Q ss_pred ---CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 183 ---DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 183 ---~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
.+++|..++|++=++.-. .++-.-++-|-....+++.|..+|...+..
T Consensus 160 V~~~iekak~liE~GgDWeRr----NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 160 VTESIEKAKSLIEEGGDWERR----NRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhCCChhhh----hhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 456666666665543322 255555666666777888888888777654
|
|
| >KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.72 E-value=1.6 Score=51.07 Aligned_cols=11 Identities=0% Similarity=0.139 Sum_probs=5.5
Q ss_pred CHHHHHHHHHh
Q 001064 1083 DISGVQNAIQA 1093 (1167)
Q Consensus 1083 ~~~~a~~Al~~ 1093 (1167)
+.+.++.+...
T Consensus 301 ~~~~l~~~Fk~ 311 (419)
T KOG0116|consen 301 TPAELEEVFKQ 311 (419)
T ss_pred CHHHHHHHHhh
Confidence 44555555444
|
|
| >KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.17 E-value=1.2 Score=49.97 Aligned_cols=71 Identities=27% Similarity=0.398 Sum_probs=53.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C-CCeeeCcEeEEEecc
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S-PIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~-~~~i~g~~l~V~~~r 1109 (1167)
..+|+|||.+.++..+|+.+|...----+-.+++ ..||+||+..+..-+.+|++. + ...+.|+++.|+..-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 3689999999999999999997431111111233 237999999999999999988 4 577899999987543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.08 E-value=8 Score=42.84 Aligned_cols=71 Identities=11% Similarity=0.010 Sum_probs=49.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 363 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 363 ~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
.+.+.+++++|+.+.++++...|.++.-|..-+.++.+.|....|+.-|+.-++.+ |+.+..-+....+..
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-PEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCchhHHHHHHHHHH
Confidence 33566777777777777777777777777777777777777777777777777766 666665555544443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.21 E-value=14 Score=40.87 Aligned_cols=69 Identities=14% Similarity=-0.041 Sum_probs=58.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
.+...++++.|+.+.++.+.+. |+++.-|.-.+.++.+.|.+..|+.-|+.- ++..|+++.+-+-...+
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~f-l~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYF-VEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHhCCCchhHHHHHHHH
Confidence 4567899999999999999987 899999999999999999999999999996 78899988765444333
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.08 E-value=72 Score=35.05 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHhhcCCHHHHHHHHHH---HHHhcCCCCC-CH
Q 001064 133 YGYWKKYADHEARVGSMDKVVEVYERAVQGV---TYSVDIWLHYCIFAINTYGDPETIRRLFER---GLAYVGTDYL-SF 205 (1167)
Q Consensus 133 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~---P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer---al~~~g~d~~-s~ 205 (1167)
.++|++.++.|.+.++.+.+.+.+.+.+... ...+|+.++.+++-+ ..++..-+.+.+|. .+.. |-|.. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~-~y~d~~vV~e~lE~~~~~iEk-GgDWeRrN 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGL-IYGDRKVVEESLEVADDIIEK-GGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHH-hhccHHHHHHHHHHHHHHHHh-CCCHHhhh
Confidence 4799999999999999999888888777643 356788888877766 55664333333332 2332 22322 12
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 206 PLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 206 ~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
++-.-++-|.....+++.|..++-.+|..
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 34444455555666777777776666543
|
|
| >PF15023 DUF4523: Protein of unknown function (DUF4523) | Back alignment and domain information |
|---|
Probab=81.38 E-value=5.3 Score=38.66 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=51.4
Q ss_pred CCCccEEEEecCCCCCCH-HHHH---HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEe
Q 001064 1028 EGEVKSVYVRNLPSTVTA-FEIE---EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV 1103 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~-~~l~---~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l 1103 (1167)
|.+-.+|.|+-|..++.. +|++ ..++.||+|.+|.. . ++--|.|.|.|..+|=+|+.+.+...-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~--c------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL--C------GRQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee--c------CCceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 445678888877666532 4444 45679999999753 2 3447999999999999999886556666666
Q ss_pred EEEe
Q 001064 1104 YIEE 1107 (1167)
Q Consensus 1104 ~V~~ 1107 (1167)
...+
T Consensus 155 qCsW 158 (166)
T PF15023_consen 155 QCSW 158 (166)
T ss_pred Eeec
Confidence 6654
|
|
| >KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.34 E-value=0.56 Score=57.72 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=58.5
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
+....++||+|||+..+++.+|+..|..+|.|.+|+|..... +..--|+||.|.+.+.+-.|... .+..|+...+++
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~--~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI--KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC--CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 344678999999999999999999999999999987644333 34456999999998888887755 455544333443
|
|
| >PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A | Back alignment and domain information |
|---|
Probab=81.20 E-value=5.8 Score=36.43 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=60.4
Q ss_pred HHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcC--CCcceeEeeeeccccCCCceEEEEEE
Q 001064 724 YFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL--NFTAIEIKTINSLGSWNGGVLVMVSG 800 (1167)
Q Consensus 724 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l--~~~~~~i~~~d~q~~~~~~i~v~v~G 800 (1167)
+.+++|...++ .+++.|.++|.++.++++.+|... +.+++.+.+..- .....++..+..+.. ++..++....
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~----~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~~ 77 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTIL----GKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGRW 77 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEE----EHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEe----CHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEEE
Confidence 46778888876 569999999999877775444432 334445555542 223345555555666 4455555556
Q ss_pred EEEecCcc--ccceeEEEEEEeeeCCeEEE
Q 001064 801 SVKTKEFC--RRRKFVQTFFLAPQEKGYFV 828 (1167)
Q Consensus 801 ~~~~~~~~--~~~~F~q~F~L~~~~~~y~v 828 (1167)
.++..... ....+.-+.++..++++|-|
T Consensus 78 ~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 78 TFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 66654322 12445666666667888765
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.08 E-value=23 Score=40.80 Aligned_cols=103 Identities=16% Similarity=0.262 Sum_probs=73.4
Q ss_pred CCCCch-HHHHHHHHHHhCCCCHHHHHHHHHHHH-hh---------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001064 76 GSAMSG-EEDRLWNIVKANSSDFSAWTALLEETE-KL---------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 144 (1167)
Q Consensus 76 ~~~~~~-a~~~l~~~l~~nP~d~~aw~~L~~~~~-~~---------~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~ 144 (1167)
.+.++. .++.-.+.++.||+-+..|..=-..++ .+ .+.-++.-.++.+.+|..+|+++.+|....-+..
T Consensus 41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~ 120 (421)
T KOG0529|consen 41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQ 120 (421)
T ss_pred ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 355554 456666888999999999982211111 11 0123455567888899999999999999888887
Q ss_pred HhC--CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Q 001064 145 RVG--SMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN 179 (1167)
Q Consensus 145 ~~~--~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~ 179 (1167)
+.. ++.+=.++++++|+.+|.|-..| +|-+|+.+
T Consensus 121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W-~YRRfV~~ 156 (421)
T KOG0529|consen 121 KNPHSDWNTELQLCEKALKQDPRNFHAW-HYRRFVVE 156 (421)
T ss_pred hCCCchHHHHHHHHHHHHhcCcccccch-HHHHHHHH
Confidence 654 46778889999999999998888 56677664
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=81.08 E-value=4.4 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=10.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCc
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRI 1058 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 1058 (1167)
..|+.-++|.+ +.++....|..
T Consensus 315 ~~VI~~~~P~~-----~~~yvqR~GRa 336 (456)
T PRK10590 315 PHVVNYELPNV-----PEDYVHRIGRT 336 (456)
T ss_pred CEEEEeCCCCC-----HHHhhhhcccc
Confidence 45555556543 22344455543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.54 E-value=8.3 Score=45.81 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001064 398 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 477 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 477 (1167)
....|+...|.+++.+|+-..|-..---...+|.++...|....|..++.++ +.++-..+..++..+++..-+.+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~-l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA-LAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH-HhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3346777777777777765543222223345566666666666677777766 445544455566666666667777777
Q ss_pred HHHHHHHHHhhhC
Q 001064 478 FSLYEQAIAIEKG 490 (1167)
Q Consensus 478 ~~~~~kAl~~~~~ 490 (1167)
++.|+.|++..++
T Consensus 696 ~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 696 LEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHhcCCC
Confidence 7777777777654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.25 E-value=1.2e+02 Score=37.62 Aligned_cols=214 Identities=19% Similarity=0.210 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDFNKVVKLYERCLIACANYPEYWIRYVLCMEA--- 400 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~---g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~--- 400 (1167)
++..|...|.++-. ++. .+.-..++.+++.. .++.+|..+|.+|... .+.+..++++.++..
T Consensus 308 d~~~A~~~~~~aA~--------~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 308 DYEKALKLYTKAAE--------LGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLG 375 (552)
T ss_pred cHHHHHHHHHHHHh--------cCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCC
Confidence 45566667777765 332 23344444444332 3677999999999877 457777888877654
Q ss_pred -cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH-HcCCHHHHHHHHHHHhhhcCCChH---HHHHHHHH---HHHH--
Q 001064 401 -SGSMDLAHNALARATHVFVKRLPEIHLFAARFKE-QNGDIDGARAAYQLVHTETSPGLL---EAIIKHAN---MERR-- 470 (1167)
Q Consensus 401 -~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e-~~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~---~e~r-- 470 (1167)
.-+.+.|...|.++.+.. .+......+.+++ -.+.++.+...+... .++--... ..++.... +..+
T Consensus 376 v~r~~~~A~~~~k~aA~~g---~~~A~~~~~~~~~~g~~~~~~~~~~~~~~-a~~g~~~~q~~a~~l~~~~~~~~~~~~~ 451 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG---NPSAAYLLGAFYEYGVGRYDTALALYLYL-AELGYEVAQSNAAYLLDQSEEDLFSRGV 451 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc---ChhhHHHHHHHHHHccccccHHHHHHHHH-HHhhhhHHhhHHHHHHHhcccccccccc
Confidence 126789999999998854 4443333333332 236666665555432 22211111 11221111 0001
Q ss_pred cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCC
Q 001064 471 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 547 (1167)
Q Consensus 471 ~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~ 547 (1167)
..+.+.+...+.++...-. +.....++++.+.- ..+++.|-..|.+|.+.. ...+|..=-..|.+.+
T Consensus 452 ~~~~~~~~~~~~~a~~~g~--------~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 452 ISTLERAFSLYSRAAAQGN--------ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEG 521 (552)
T ss_pred ccchhHHHHHHHHHHhccC--------HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcC
Confidence 1256677777777765542 34555666664432 347899999999998877 5566643334556667
Q ss_pred ChhHHHHHHHHHHHHhhcCC
Q 001064 548 SPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 548 ~~~~~~~ar~l~eral~~~~ 567 (1167)
.+. +..+.+.|+++.....
T Consensus 522 ~~~-~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEEDS 540 (552)
T ss_pred cch-hHHHHHHHHHHHhcCc
Confidence 666 7788888888866543
|
|
| >PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN) | Back alignment and domain information |
|---|
Probab=80.02 E-value=6.1 Score=34.79 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=37.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
.-.||. .|......||.++|+.||.|. |.-.+. .-|||...+.+.+..++..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~---VsWi~d------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY---VSWIND------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE---EEEECT------TEEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE---EEEEcC------CcEEEEeecHHHHHHHHHH
Confidence 334454 999999999999999999985 433343 3799999999999988766
|
; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1167 | ||||
| 3q90_A | 140 | Crystal Structure Of The Ntf2 Domain Of Ras Gtpase- | 6e-14 | ||
| 2ooe_A | 530 | Crystal Structure Of Hat Domain Of Murine Cstf-77 L | 4e-10 | ||
| 3ujm_A | 120 | Crystal Structure Of The Ntf2-Like Domain Of The Dr | 4e-10 | ||
| 1zo2_A | 129 | Structure Of Nuclear Transport Factor 2 (Ntf2) From | 5e-04 |
| >pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras Gtpase-Activating Protein- Binding Protein 1 Length = 140 | Back alignment and structure |
|
| >pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77 Length = 530 | Back alignment and structure |
|
| >pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The Drosophila Melanogaster Rasputin Protein Length = 120 | Back alignment and structure |
|
| >pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From Cryptosporidium Parvum Length = 129 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 285 bits (729), Expect = 6e-85
Identities = 107/594 (18%), Positives = 211/594 (35%), Gaps = 109/594 (18%)
Query: 90 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 149
++ N D AW+ L+ E + I K R+ Y+ +A+FP +WK Y + E + +
Sbjct: 6 LEENPYDLDAWSILIREAQ---NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 62
Query: 150 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP----ETIRRLFERGLAYVGTDYLSF 205
DKV ++++R + V +D+W Y + T G E + + ++ L +G + +S+
Sbjct: 63 DKVEKLFQRCLMKV-LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121
Query: 206 PLWDKYIEYEY---------MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256
+W YI + Q + V +Y R NP+ +++ + + ++
Sbjct: 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKY------- 174
Query: 257 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 316
E+ A + Y+
Sbjct: 175 --------------------------------------EEGINIHLAKKMIEDRSRDYMN 196
Query: 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD------- 369
R AKE+++ + G + P +++ W Y+ + + +
Sbjct: 197 ARR----VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 252
Query: 370 -FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM--------------DLAHNALARA 414
+V+ YE+CL+ ++P+ W +E S + D A N RA
Sbjct: 253 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312
Query: 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 474
+K+ ++ A ++E + + Y + I++ RR +
Sbjct: 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 372
Query: 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 534
+ ++++A E ++T +Y + + S++ A +I L
Sbjct: 373 KSGRMIFKKAR------EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 426
Query: 535 LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGD 594
+ A I + S + + L ++ L S S P + E+ FL F GD
Sbjct: 427 YVLAYIDYLSHL---NEDNNTRVLFERVLTSGSLPPE-----KSGEIWARFLAFESNIGD 478
Query: 595 AQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSL 648
I K E R F R E ++ L +R K Y + S ++L
Sbjct: 479 LASILKVEKRRFTAF---REEYEGKETA----LLVDRYKFMDLYPCSASELKAL 525
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 5e-15
Identities = 62/384 (16%), Positives = 116/384 (30%), Gaps = 74/384 (19%)
Query: 87 WNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV 146
+++ S D+ + +E E + + V + WKKY E
Sbjct: 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243
Query: 147 G--------SMDKVVEVYERAVQGVTYSVDIWLHYCIFAI-------------NTYGDPE 185
+V+ YE+ + + + DIW + N +
Sbjct: 244 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303
Query: 186 TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSS 245
++ER ++ + + L+ Y +YE + ++ +V IY R+L +
Sbjct: 304 EAANIYERAISTLLKKNML--LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 361
Query: 246 FKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL 305
+ +F R AE + + + A E
Sbjct: 362 YMKF--------ARRAEGIKSG-------------------RMIFKKAREDART------ 388
Query: 306 TEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE 365
+ A+ E K K KI FE +++ E Y+D++
Sbjct: 389 --RHHVYVTAALMEYYCSKDKSVAFKI--FELGLKKYG--------DIPEYVLAYIDYLS 436
Query: 366 RDGDFNKVVKLYERCLIACANYPE----YWIRYVLCMEASGSMDLAHNALARATHVFVKR 421
+ N L+ER L + + PE W R++ G + R F +
Sbjct: 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496
Query: 422 --LPEIHLFAARFKEQNGDIDGAR 443
E L R+K + A
Sbjct: 497 YEGKETALLVDRYKFMDLYPCSAS 520
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 205 bits (521), Expect = 1e-55
Identities = 72/698 (10%), Positives = 174/698 (24%), Gaps = 123/698 (17%)
Query: 30 MGSSQAAGYNS----MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDR 85
MGSS ++S G+ + G+ + ++ D +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSTSLRPTSRVRDESD------VIGK 54
Query: 86 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE-- 143
L ++++ +D + LL+ ++ +D FPL W E
Sbjct: 55 LNDMIEEQPTDIFLYVKLLKHHVS--LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFD 112
Query: 144 -ARVGSMDKVVEVYERAVQGV--TYSVDIWLHYCIFAINTYGDP-------ETIRRLFER 193
+ V R + + +WL Y + + + F+
Sbjct: 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQV 172
Query: 194 GLAYVGT-DYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILENPIQQLDRYF 243
+ + S W++Y+ + QQ + +Y +L P+ L+ +
Sbjct: 173 VVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMW 232
Query: 244 SSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303
+ ++ TA E+ S
Sbjct: 233 QRYTQWEQDVNQL---TARRH---------------------IGELSAQYMNARSL---- 264
Query: 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 363
++ + + + ++ Y +L W ++ +
Sbjct: 265 ----YQDWLNIT---KGLKRNLPITLNQATESNLPKPNEYDV------QQLLIWLEWIRW 311
Query: 364 -------IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416
+ D ++ +Y + PE W + +
Sbjct: 312 ESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ 371
Query: 417 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT---------------------ETSP 455
+ + + E N I +
Sbjct: 372 QCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431
Query: 456 GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515
L + N +R+ L + ++ + ++K Y + + + +S++
Sbjct: 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI-----YLENAYIEYHISKDT 486
Query: 516 EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQI-DFLEQLVDKFLMSNSDSPSTAN 574
+ A ++L L + + + F + Q+ E +DK +
Sbjct: 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS----------D 536
Query: 575 AAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFL----ASE 630
+ + + + F G ++ E R F E ++ + E
Sbjct: 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLDVNYLQRLE 596
Query: 631 RAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQ 668
M + + G +
Sbjct: 597 LDYMVRDVMPEAIALDRGSNNLKRTMREEEDGQAFKKF 634
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 197 bits (501), Expect = 2e-54
Identities = 61/499 (12%), Positives = 140/499 (28%), Gaps = 94/499 (18%)
Query: 135 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERG 194
++A + ++ R ++ +Y++D+W+ Y + + ++E
Sbjct: 16 AIMEHARRLYMSKDYRSLESLFGRCLK-KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74
Query: 195 LAYVGTDYLSFPLWDKYIE----YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 250
L + S+ L+ +YIE E Q ++ Y R L+ P+ L + F+ F
Sbjct: 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF- 133
Query: 251 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 310
E ++ +
Sbjct: 134 --------------------------------------------ELELNKITGKKIVGDT 149
Query: 311 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF 370
L + + +++ ++ I G+ + E+EN +
Sbjct: 150 LPIF----QSSFQRYQQIQPLIRGWSVKNAARLIDL------EMENG----MKLGGRPHE 195
Query: 371 NKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430
+++ ++ L + E + Y + G + A + R + + L+
Sbjct: 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMF--LSLYYG 253
Query: 431 RFKEQNGDIDGARAAYQLVHTE-----TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 485
++ + Y + E S L I H N + LE L+ +
Sbjct: 254 LVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG 313
Query: 486 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545
+ P ++ + + + + I L S L E F
Sbjct: 314 -------NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366
Query: 546 QSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 605
+ L + ++K + +E+ + G +L ++ D+
Sbjct: 367 IGDEENARALFKRLEK----------------TSRMWDSMIEYEFMVGSMELFRELVDQK 410
Query: 606 ARLFLPHRSTSELRKRHAE 624
L R
Sbjct: 411 MDAIKADAILPPLPPREHN 429
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 2e-16
Identities = 64/487 (13%), Positives = 131/487 (26%), Gaps = 81/487 (16%)
Query: 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG-------YWKKYADHEARVGS 148
+ W +E K++ K+ VY+ L +F + Y ++ E
Sbjct: 46 NLDLWMLYIEYVRKVS-QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104
Query: 149 MDKVVEVYERAVQGVTYSVD-IWLHYCIFAINTYGDPETIRRLFERGLAYVG-------- 199
++K+ Y RA+Q S+ +W + F + + + +
Sbjct: 105 IEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTLPIFQSSFQRYQQI 163
Query: 200 ---TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDR-YFSSFKEFAASRPL 255
S + I+ E +R+ LD Y++ F S L
Sbjct: 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYL 223
Query: 256 SELRTAEEVDAAAV-AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKY 314
+ E+ + + + +E Y
Sbjct: 224 IGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVM---------------------DEEAVY 262
Query: 315 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV 374
++ + E K+ E N+L+++ +
Sbjct: 263 GDLKRKYSMGEAESAEKVFSKELD----------------LLRINHLNYVLKKRGLELFR 306
Query: 375 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434
KL+ + + A+GS +N + + F
Sbjct: 307 KLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS-TLLKEEFFLFLL 365
Query: 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 494
+ GD + ARA + + E +G++E L +Q + K
Sbjct: 366 RIGDEENARALF-----KRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAIL 420
Query: 495 QTLP---------------MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 539
LP + FL L R+ + +++L + +L L
Sbjct: 421 PPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRLLDEFMENLPKISQQNNVLSNL 480
Query: 540 IHFESIQ 546
+ I
Sbjct: 481 RVEKVIS 487
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 4e-09
Identities = 39/361 (10%), Positives = 104/361 (28%), Gaps = 74/361 (20%)
Query: 86 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRV---YDAFLAEFPLCYGYWKKYADH 142
+ +++ S +A LE + R+ ++ L F + Y+++
Sbjct: 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222
Query: 143 EARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 202
+G +K +V ER ++ ++ + + L+Y + ++R + G A
Sbjct: 223 LIGIGQKEKAKKVVERGIE-MSDGMFLSLYYGLVMDE-EAVYGDLKRKYSMGEAESAEKV 280
Query: 203 LSFPL---WDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELR 259
S L ++ Y ++ ++ + + + +F E+ A+ +
Sbjct: 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPY 340
Query: 260 TAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVRE 319
+ E++
Sbjct: 341 NIFS-----------------------------------SGLLKHPDSTLLKEEFF---- 361
Query: 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYER 379
+ + ++ F+ + W + +++ G +L ++
Sbjct: 362 LFLLRIGDEENARALFKRLEKTSRM------------WDSMIEYEFMVGSMELFRELVDQ 409
Query: 380 CLIACANYPEYWI---------------RYVLCMEASGSMDLAHNALARATHVFVKRLPE 424
+ A RY +++ +DL +R F++ LP+
Sbjct: 410 KMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRLLDEFMENLPK 469
Query: 425 I 425
I
Sbjct: 470 I 470
|
| >3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-39
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Query: 712 AYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDI 767
P VG FV QYY +L Q PD++H+FY SS + +G ++ +I
Sbjct: 3 VMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEI 62
Query: 768 HSLVISLNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ--- 822
H V+S NFT +I+ +++ + N GV+V V G + R+F+QTF LAP+
Sbjct: 63 HRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNN-QALRRFMQTFVLAPEGSV 121
Query: 823 EKGYFVLNDIFHFLDE 838
++V NDIF + DE
Sbjct: 122 ANKFYVHNDIFRYQDE 137
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 8e-38
Identities = 50/284 (17%), Positives = 96/284 (33%), Gaps = 36/284 (12%)
Query: 348 PLSVTELENWHNYLDFIERDG--------DFNKVVKLYERCLIACANYPEYWIRYVLCME 399
P +++ W Y+ + + + +V+ YE+CL+ ++P+ W +E
Sbjct: 2 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 61
Query: 400 ASGS--------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 445
S D A N RA +K+ ++ A ++E + +
Sbjct: 62 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121
Query: 446 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 505
Y + I++ RR ++ ++++A + + H Y +
Sbjct: 122 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV------YVTAA 175
Query: 506 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 565
+ S++ A +I L + A I + S + L ++ L S
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT---RVLFERVLTS 232
Query: 566 NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 609
S P + E+ FL F GD I K E R F
Sbjct: 233 GSLPPE-----KSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 3e-15
Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 8/150 (5%)
Query: 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGY-WKKYADHEARVGSMDKVVEVYERAV 160
A EE+ K+ +Y+ LA + + +Y R + ++++A
Sbjct: 106 ADYEESRM----KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161
Query: 161 QGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE 220
+ +++ + D ++FE GL G YI+Y E
Sbjct: 162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSHLNE 218
Query: 221 WSRVAMIYTRILENPIQQLDRYFSSFKEFA 250
+ +++ R+L + ++ + F
Sbjct: 219 DNNTRVLFERVLTSGSLPPEKSGEIWARFL 248
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 1e-14
Identities = 56/328 (17%), Positives = 103/328 (31%), Gaps = 74/328 (22%)
Query: 136 WKKYADHE--------ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF----------- 176
WKKY E + +V+ YE+ + + + DIW +
Sbjct: 11 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 70
Query: 177 --AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234
N + ++ER ++ + + L+ Y +YE + ++ +V IY R+L
Sbjct: 71 GDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128
Query: 235 PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 294
+ + +F R AE + + + A
Sbjct: 129 EDIDPTLVYIQYMKF--------ARRAEGIKSG-------------------RMIFKKAR 161
Query: 295 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL 354
E + A+ E K K KI FE +++ Y +
Sbjct: 162 EDARTR--------HHVYVTAALMEYYCSKDKSVAFKI--FELGLKK-YGDIPEY----- 205
Query: 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE----YWIRYVLCMEASGSMDLAHNA 410
Y+D++ + N L+ER L + + PE W R++ G +
Sbjct: 206 --VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263
Query: 411 LARATHVFVKR--LPEIHLFAARFKEQN 436
R F + E L R+K +
Sbjct: 264 EKRRFTAFREEYEGKETALLVDRYKFMD 291
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 39/305 (12%), Positives = 90/305 (29%), Gaps = 32/305 (10%)
Query: 207 LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEV-- 264
+W KYI++E + + T+ R +++ + L L ++
Sbjct: 10 MWKKYIQWEKSNPLRTEDQTLITK----------RVMFAYE-----QCLLVLGHHPDIWY 54
Query: 265 DAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 324
+AA ++ N + +A + +S L + L A EE K
Sbjct: 55 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114
Query: 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 384
++ S + + + + Y+ F R ++++
Sbjct: 115 YEKVHS---IYNRLL-------AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164
Query: 385 ANYPEYWIRYVLC-MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 443
++ L S +A + PE L + + + R
Sbjct: 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTR 223
Query: 444 AAYQ--LVHTETSPGLLEAI-IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 500
++ L P I + E +G+L + ++ + + + +L
Sbjct: 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALL 283
Query: 501 YAQYS 505
+Y
Sbjct: 284 VDRYK 288
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 8e-07
Identities = 45/305 (14%), Positives = 94/305 (30%), Gaps = 61/305 (20%)
Query: 117 KIRRVYDAFLAEFPLCYGYWKKYA--------------DHEARVGSMDKVVEVYERAVQ- 161
++ Y+ L W + A D D+ +YERA+
Sbjct: 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93
Query: 162 GVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 221
+ ++ ++ Y + + E + ++ R LA D ++ +Y+++ +
Sbjct: 94 LLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDPTL--VYIQYMKFARRAEGI 150
Query: 222 SRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAE 281
MI+ + E+ + Y ++ E +++ A E G +
Sbjct: 151 KSGRMIFKKAREDARTRHHVYVTAALM--------EYYCSKDKSVAFKIF-----ELGLK 197
Query: 282 VKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 341
+ E + YI + E ++ + FE +
Sbjct: 198 KYGDIPEY---------------------VLAYI----DYLSHLNEDNNTRVLFERVLTS 232
Query: 342 PYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 401
+ E W +L F GD ++K+ +R A E L ++
Sbjct: 233 GSLPPEKSG----EIWARFLAFESNIGDLASILKVEKRRFTAFREEYE-GKETALLVDRY 287
Query: 402 GSMDL 406
MDL
Sbjct: 288 KFMDL 292
|
| >3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster} Length = 120 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 6e-36
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT 777
VG FV QYY +L + P+ +H+FY+ SS I + + +IH+ + LNF
Sbjct: 3 HMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGES---KLVVGQREIHNRIQQLNFN 59
Query: 778 AI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFH 834
+I +++ + GV+V V+G + R+F QTF LA Q K Y+V NDIF
Sbjct: 60 DCHAKISQVDAQATLGNGVVVQVTGELSNDGQP-MRRFTQTFVLAAQSPKKYYVHNDIFR 118
Query: 835 F 835
+
Sbjct: 119 Y 119
|
| >1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A Length = 125 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-35
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNF- 776
+ F YY + Y + S + T DI ++SL F
Sbjct: 5 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTF----ETSQLQGAKDIVEKLVSLPFQ 60
Query: 777 -TAIEIKTINSLGS-WNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFH 834
I T+++ + G VLVM++G + E ++F Q F L P Y+V NDIF
Sbjct: 61 KVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
Query: 835 F 835
Sbjct: 121 L 121
|
| >1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A Length = 127 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-34
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT 777
Q+GS F+ YYQ+ + Y DAS + + I + SL F
Sbjct: 7 WEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTW----EGQQFQGKAAIVEKLSSLPFQ 62
Query: 778 AI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 835
I I + + + ++ MV G +K E F Q F L + ND+F
Sbjct: 63 KIQHSITAQDHQPTPDSCIISMVVGQLKADE-DPIMGFHQMFLLKNINDAWVCTNDMFRL 121
Query: 836 LDEE 839
Sbjct: 122 ALHN 125
|
| >3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} Length = 154 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 3e-33
Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 689 AYSAYGSSYPTPQTSVPQNAAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDAS 748
++ + S +S + F+ YY V+ ++ + + Y+ S
Sbjct: 4 SHHHHHHSQDPNSSSSMKTTQEINKEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVS 63
Query: 749 SMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTI-------NSLGSWNGGVLVMVSGS 801
+ + + + I + +L T +I+++ G +GG+L+ V+G+
Sbjct: 64 NAVW----NGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGA 119
Query: 802 VKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 837
V +R F QT L ++ Y V +D F ++D
Sbjct: 120 VTVDG-DSKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154
|
| >1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A Length = 140 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-32
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 719 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA 778
+ FV YY + ++ L+ + Y ++++ + + S + L +
Sbjct: 14 CRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVW----NGNAVSGQESLSEFFEMLPSSE 69
Query: 779 IEIKTINS------LGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG----YFV 828
+I ++ VLV++ GSVK + ++R F Q F L Q + +
Sbjct: 70 FQISVVDCQPVHDEATPSQTTVLVVICGSVKFEG-NKQRDFNQNFILTAQASPSNTVWKI 128
Query: 829 LNDIFHFLD 837
+D F F D
Sbjct: 129 ASDCFRFQD 137
|
| >1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2 Length = 129 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 8e-31
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 717 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNF 776
Q+G FV YYQ Q + Y S + D +I + SLNF
Sbjct: 10 QFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED----TQFQGQANIVNKFNSLNF 65
Query: 777 --TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ-EKGYFVLNDIF 833
EI ++ S N G +V V+G V+ + + KF Q F L P G+ + ND+F
Sbjct: 66 QRVQFEITRVDCQPSPNNGSIVFVTGDVRIDD-GQPLKFSQVFNLMPSGNGGFMIFNDLF 124
Query: 834 HF 835
Sbjct: 125 RL 126
|
| >2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A Length = 154 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-30
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 20/151 (13%)
Query: 708 AAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDS---------- 757
++ A + F+ YY+ ++ P + FY+ + + + S
Sbjct: 1 GSHMASMGVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVL 60
Query: 758 -TESASSMLDIHSLVISLNFTAIEIKT-INSL-----GSWNGGVLVMVSGSVKTKEFCRR 810
T + +I+ + +K ++++ G + +L+M +G +
Sbjct: 61 PTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTG-TPV 119
Query: 811 RKFVQTFFLAPQEKG--YFVLNDIFHFLDEE 839
KF QTF L P G + + NDI F+
Sbjct: 120 YKFCQTFILLPSSNGSTFDITNDIIRFISNS 150
|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 5e-16
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
++SV+V P V + ++ E F FG + V +++ +A VE D+ +
Sbjct: 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVA-SVVMDKDKG-----VFAIVEMGDVGAREAV 61
Query: 1091 IQASPIQLAGRQVYIEERRPNTGSTSRGGR 1120
+ S L G ++ + R +
Sbjct: 62 LSQSQHSLGGHRLRVRPREQKEFQSPASKS 91
|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-14
Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
++ N+P ++T ++ + + + + V V + G+ A V+F++
Sbjct: 12 NSAKVCAHITNIPFSITKMDVLQFLEGIP-VDENAVHVLVDNNGQGLGQALVQFKNEDDA 70
Query: 1088 QNAIQASPIQLAGRQVYI-----EERRPNTGSTSRGGRRGRGRG 1126
+ + + +L GR+ ++ E+ R + G+ G G
Sbjct: 71 RKSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKSGPSSG 114
|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-14
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
V+VR L +V ++ E + FG I + + ++ A VEFE+I + +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTIC-YVMMMPFKR------QALVEFENIDSAKECV 68
Query: 1092 QA---SPIQLAGRQVYI------EERRPNTGSTSRG 1118
P+ +AG+Q + RP S G
Sbjct: 69 TFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
V++R L V ++ E Q FG I V + ++ A VEFED+ G NA+
Sbjct: 22 PVVHIRGLIDGVVEADLVEALQEFGPIS-YVVVMPKKR------QALVEFEDVLGACNAV 74
Query: 1092 QA---SPIQLAGRQVYIE 1106
+ I +AG ++
Sbjct: 75 NYAADNQIYIAGHPAFVN 92
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 4e-13
Identities = 13/97 (13%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 1025 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI 1084
G + ++++ NL + E++ + V + + + +V+FE
Sbjct: 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKN--DLAVVDVRTGTNRKFGYVDFESA 64
Query: 1085 SGVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRR 1121
++ A++ + +++ G ++ +E+ + R R
Sbjct: 65 EDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAART 101
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+ +NL +T E++E F++ I+ +++ A++EF+ + + ++
Sbjct: 102 LLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK------GIAYIEFKSEADAEKNLEE 155
Query: 1094 -SPIQLAGRQVYI 1105
++ GR V +
Sbjct: 156 KQGAEIDGRSVSL 168
|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 5e-13
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 1007 GVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR 1066
G S +S D+L +E + ++V+ L + + ++E+ F G+++ D +
Sbjct: 1 GSSGSSGKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIIS 59
Query: 1067 NRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI---EERRPNTGSTSRG 1118
+R A+VEF +I V AI + +L G + + + + S G
Sbjct: 60 DRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLSGPSSG 114
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 7e-13
Identities = 98/649 (15%), Positives = 193/649 (29%), Gaps = 199/649 (30%)
Query: 117 KIRRVY-DAFLAEFPLCYGYWKKYADHEARVGS---MDKVVEVYERAVQGVTYSVDIWLH 172
I V+ DAF+ F C K D + S +D ++ + T + W
Sbjct: 20 DILSVFEDAFVDNFD-C----KDVQDMPKSILSKEEIDHIIMSKDAVSG--TLRL-FWT- 70
Query: 173 YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232
+ + + E +++ E L Y+++ + +
Sbjct: 71 -----LLSKQE-EMVQKFVEEVLRI---------------NYKFLMSPIKTEQRQPSMMT 109
Query: 233 ENPIQQLDRYFSS---FKEFAASR--PLSELRTA--EEVDAAAVAVAAAPSETGAEVKAN 285
I+Q DR ++ F ++ SR P +LR A E A V + +G A
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-SGKTWVAL 168
Query: 286 EEEVQPDATEQTSKP-----VSAGLTEAEE-----LEKYIAVREEMYKKAKEFDSKII-- 333
+V Q ++ + E L+K + + + + S I
Sbjct: 169 --DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 334 --GFETAIRRPYFHVKP----LSVTELEN-WH----NYLDF------IERDG---DFNKV 373
+ +RR KP L V L N + N + R DF
Sbjct: 227 IHSIQAELRR-LLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 374 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE--------- 424
L + + + L L + + LP
Sbjct: 284 ATTTHISL----------DHHSMTLTPDEVKSL----LLKYLDCRPQDLPREVLTTNPRR 329
Query: 425 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE--------D 476
+ + A ++ D ++ V+ + L II+ + L LE D
Sbjct: 330 LSIIAESIRDGLATWDN----WKHVNCDK----LTTIIESS-----LNVLEPAEYRKMFD 376
Query: 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF--------LH---LVSRNAEKAR----QI 521
S++ + I + L +++ + LH LV + +++ I
Sbjct: 377 RLSVFPPSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 522 LVDSLDHV----QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL-------MSNSDSP 570
++ + L + +++ H+ ++ D + +D++ + N +
Sbjct: 432 YLELKVKLENEYALHRSIVD---HYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIE-- 485
Query: 571 STANAAEREELSCVFLEF--------------------LGLFGDAQL----IKKAEDRHA 606
+ VFL+F L + I + ++
Sbjct: 486 ---HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 607 RL------FLPHRSTSELRKRHAEDFLASERAKMAKS---YSGAPSPAQ 646
RL FLP + + ++ D L A MA+ + A Q
Sbjct: 543 RLVNAILDFLPKIEENLICSKYT-DLL--RIALMAEDEAIFEEAHKQVQ 588
|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 3e-12
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ +++R LP VT E+ FG++ N + G AF+E +
Sbjct: 17 RVIHIRKLPIDVTEGEVISLGLPFGKVT-------NLLMLKGKNQAFIEMNTEEAANTMV 69
Query: 1092 QA---SPIQLAGRQVYI------EERRPNTGSTSRG 1118
L G+ +YI E + ++ + +R
Sbjct: 70 NYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARA 105
|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 3e-12
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ +++R LP VT E+ FG++ N + G AF+E +
Sbjct: 16 RVLHIRKLPGEVTETEVIALGLPFGKVT-------NILMLKGKNQAFLELATEEAAITMV 68
Query: 1092 QA---SPIQLAGRQVYIE 1106
L + +YI+
Sbjct: 69 NYYSAVTPHLRNQPIYIQ 86
|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-12
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV NLP + +IE+ F +G I+ + ++NR+ G +AFVEFED ++A+
Sbjct: 25 IYVGNLPPDIRTKDIEDVFYKYGAIR--DIDLKNRRG--GPPFAFVEFEDPRDAEDAVYG 80
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1126
G ++ +E R RG G G
Sbjct: 81 RDGYDYDGYRLRVEFPRS-----GRGTGSGPSSG 109
|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-11
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ +++R LP VT E+ FG++ + + ++ + AF+E +
Sbjct: 32 RVIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKGK------NQAFIEMNTEEAANTMV 84
Query: 1092 QA---SPIQLAGRQVYI------EERRPNTGSTSR 1117
L G+ +YI E + ++ + +R
Sbjct: 85 NYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQAR 119
|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 17/108 (15%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 1016 GFEAVDD-SLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV 1074
G ++D G + ++++ NL + E++ + V + +
Sbjct: 1 GSHMLEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKN--DLAVVDVRTGTNR 58
Query: 1075 CYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
+ +V+FE ++ A++ + +++ G ++ +E+ R G RG
Sbjct: 59 KFGYVDFESAEDLEKALELTGLKVFGNEIKLEK------PKGRDGTRG 100
|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 14/85 (16%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDI 1084
++ + +SVY++ P+ T +I+E ++ G++ + ++ R+ + FV F+ I
Sbjct: 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV----LNIQMRRTLHKAFKGSIFVVFDSI 62
Query: 1085 SGVQNAIQASPIQLAGRQVYIEERR 1109
+ ++ + + I +
Sbjct: 63 ESAKKFVETPGQKYKETDLLILFKD 87
|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-11
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
+VK ++VRNL +TVT +E+ F FG++ V+ KD YAF+ F++ G
Sbjct: 10 KVKVLFVRNLANTVTEEILEKAFSQFGKL----ERVKKLKD-----YAFIHFDERDGAVK 60
Query: 1090 AIQA-SPIQLAGRQVYIEE-RRPNTGSTSRGGRRGRGRG 1126
A++ + L G + I + P+ R +R G
Sbjct: 61 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAASG 99
|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-11
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
VYV NL + E+E F +G ++ V++ +AFVEFED ++A++
Sbjct: 2 KVYVGNLGTGAGKGELERAFSYYGPLR--TVWIARN----PPGFAFVEFEDPRDAEDAVR 55
Query: 1093 A-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRG 1145
+ G +V +E S G R P R L G
Sbjct: 56 GLDGKVICGSRVRVEL--------STGMPRRSRFDR----PPARRKLLEVLFNG 97
|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-11
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 11/134 (8%)
Query: 987 PAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAF 1046
AP T S T+ E E E + +SVYV N+ TA
Sbjct: 2 IAPCMQTTHSKMTAGAYTEGPPQPLSAEEK----------KEIDKRSVYVGNVDYGSTAQ 51
Query: 1047 EIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1106
++E F + G I + ++ YA++EF + + V A+ GR + +
Sbjct: 52 DLEAHFSSCGSIN-RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110
Query: 1107 ERRPNTGSTSRGGR 1120
+R N S R
Sbjct: 111 PKRTNMPGISSTDR 124
|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 2e-10
Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 2/172 (1%)
Query: 991 PTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEE 1050
++ + + G A + + G+ ++Y+ NL T ++ E
Sbjct: 28 SANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 87
Query: 1051 EFQNFGRIK-PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASP-IQLAGRQVYIEER 1108
+ G + F NR + +A V + + + P +L G+ +
Sbjct: 88 AVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147
Query: 1109 RPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDGGDYNRSRGNG 1160
S R + + + G Q G R G
Sbjct: 148 NKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAV 199
|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-10
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+Y+ NL VTA ++ + F + G + YAFV++ D + AI
Sbjct: 9 NKLYIGNLSPAVTADDLRQLFGDRKLPL-AGQVLLKSG------YAFVDYPDQNWAIRAI 61
Query: 1092 QA--SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
+ ++L G+ + ++ S G G
Sbjct: 62 ETLSGKVELHGKIMEVDYSVS-KKLRSSGPSSG 93
|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-10
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
+ +++ NLP T EI F+ +G++ + Y FV ED + ++
Sbjct: 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVL--ECDIIKN-------YGFVHIEDKTAAED 57
Query: 1090 AIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSY 1128
AI+ +L G + +E S+ + S
Sbjct: 58 AIRNLHHYKLHGVNINVEA--------SKNKSKASSGPSS 89
|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-10
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
D V +R LP + EI + F I P+G+ + AFV+F
Sbjct: 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLE-IVPNGMTLPVDFQGRSTGEAFVQFASQEI 69
Query: 1087 VQNAIQASPIQLAGRQVYIE 1106
+ A++ ++ R + I
Sbjct: 70 AEKALKKHKERIGHRYIEIF 89
|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++YV NL T +I E F G IK + ++ + FVE+ + +NA+
Sbjct: 40 CTLYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
Query: 1092 QA-SPIQLAGRQVYIEE--RRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGR 1144
+ + +L R + + RG G+ R Y+ D GR GG G
Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGR-GGYGKLA 153
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
+ +YV N+P +T + + F R+ G V + +AF+EF +
Sbjct: 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 64
Query: 1088 QNAIQASPIQLAGRQVYIEERRPN 1111
A+ I G+ + I RRP+
Sbjct: 65 TQAMAFDGIIFQGQSLKI--RRPH 86
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1091
+++ LP+ + +++E +FG +K V++ G+ YAF E+ DI+ AI
Sbjct: 117 LFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKDSAT--GLSKGYAFCEYVDINVTDQAI 173
Query: 1092 QA-SPIQLAGRQVYI 1105
+ +QL +++ +
Sbjct: 174 AGLNGMQLGDKKLLV 188
|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Length = 96 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-10
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 1034 VYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+++ NLP V+ ++ F +G I + ++N + F++F++ V++AI+
Sbjct: 13 LFIGNLPLKNVSKEDLFRIFSPYGHIM--QINIKNA-------FGFIQFDNPQSVRDAIE 63
Query: 1093 A-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
S G+++ +E N G G
Sbjct: 64 CESQEMNFGKKLILEVSSSNARPQFDHGDHG 94
|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-10
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
E + +S+YV N+ TA E+E F G + + ++ +A++EF D V
Sbjct: 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVN-RVTILCDKFSGHPKGFAYIEFSDKESV 61
Query: 1088 QNAIQASPIQLAGRQVYIEERRPN 1111
+ ++ GRQ+ + +R N
Sbjct: 62 RTSLALDESLFRGRQIKVIPKRTN 85
|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-10
Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
+++ +NL +T E++E F++ I+ +++ G A++EF+ +
Sbjct: 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK----G--IAYIEFKSEADA 66
Query: 1088 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
+ ++ ++ GR V + + +GG RG
Sbjct: 67 EKNLEEKQGAEIDGRSVSLYY------TGEKGGTRG 96
|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 9e-10
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++V N+ T T E+ +F+ +G + + V++ YAFV E AI
Sbjct: 11 TKLHVGNISPTCTNQELRAKFEEYGPVI-ECDIVKD--------YAFVHMERAEDAVEAI 61
Query: 1092 QA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
+ + G++++++ T+ G G
Sbjct: 62 RGLDNTEFQGKRMHVQLSTS-RLRTASGPSSG 92
|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 9e-10
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V N+ + T+ E+ F+ GR+ V YAFV E + + AI
Sbjct: 12 IFVGNVSAACTSQELRSLFERRGRVI--ECDVVKD-------YAFVHMEKEADAKAAIAQ 62
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1126
+ ++ G+++ +E ST + G G
Sbjct: 63 LNGKEVKGKRINVEL------STKGQKKSGPSSG 90
|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-09
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
VK +YVRNL + + IE+EF N V+ +D YAFV F +
Sbjct: 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAV--ERVKKIRD-----YAFVHFSNREDAVE 66
Query: 1090 AIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
A++A + L G + + +P S G G
Sbjct: 67 AMKALNGKVLDGSPIEVTLAKPVD-KDSSGPSSG 99
|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ +Y+RNLP +TA E+ + F +G I+ +R A+V +EDI +NA+
Sbjct: 9 RILYIRNLPYKITAEEMYDIFGKYGPIRQ----IRVGNTPETRGTAYVVYEDIFDAKNAV 64
Query: 1092 QA-SPIQLAGRQVYIEERRPN 1111
S ++ R + + N
Sbjct: 65 DHLSGFNVSNRYLVVLYYNAN 85
|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Length = 110 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-09
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 17/123 (13%)
Query: 1006 SGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVF 1064
SG S + V + + V++ NL + V ++E F +GR+ G
Sbjct: 3 SGSSGMSLKLQASNVTNKNDPKSINSR-VFIGNLNTALVKKSDVETIFSKYGRVA--GCS 59
Query: 1065 VRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1123
V YAFV++ + + A+ + LAG+ + I + R G
Sbjct: 60 VHKG-------YAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP-----KPDRSGP 107
Query: 1124 GRG 1126
G
Sbjct: 108 SSG 110
|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 20/119 (16%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR----KDVVGVCYAFVEFE 1082
+ +++ L ++ F G I + + +++R + +AF+ FE
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPIS-EVLLIKDRTSKSR-----GFAFITFE 56
Query: 1083 DISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGR 1140
+ + +NA + + L G+ + +E+ + + + G R R S + +P G
Sbjct: 57 NPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF---QSGGRRRPPASSRNRSPSGSLEHH 112
|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-09
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
V V LP + + ++++ + G + + +D VEF + A++
Sbjct: 18 VVVSGLPPSGSWQDLKDHMREAGDV----CYADVYRD----GTGVVEFVRKEDMTYAVRK 69
Query: 1094 ---SPIQ-LAGRQVYIEERRPNTGSTSRGGRRGRGRGS 1127
+ + G YI + S S G R G S
Sbjct: 70 LDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSSGPSS 107
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-09
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC-------YAFVEF 1081
G + +YV N+P +T + + F R+ G + + V +AF+EF
Sbjct: 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLEF 58
Query: 1082 EDISGVQNAIQASPIQLAGRQVYIEERRPN 1111
+ A+ I G+ + I RRP+
Sbjct: 59 RSVDETTQAMAFDGIIFQGQSLKI--RRPH 86
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ LP+ + +++E +FG +K V++ + YAF E+ DI+ AI
Sbjct: 97 LFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155
Query: 1094 -SPIQLAGRQVYI 1105
+ +QL +++ +
Sbjct: 156 LNGMQLGDKKLLV 168
|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-09
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---------GVCYA 1077
D + +++V+ L VT + + F+ G IK + + ++ G A
Sbjct: 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG--EA 60
Query: 1078 FVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSY 1128
V F+D + AI + +G + + GG G +
Sbjct: 61 TVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGLEHH 112
|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 7e-09
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
V V LP + + ++++ + G + + +D VEF + A++
Sbjct: 19 VVVSGLPPSGSWQDLKDHMREAGDV----CYADVYRD----GTGVVEFVRKEDMTYAVRK 70
Query: 1094 --------SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQT 1130
+ A +V ++ R + SR R R R ++
Sbjct: 71 LDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRS 115
|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Length = 193 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 1e-08
Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 7/135 (5%)
Query: 974 SFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKS 1033
F + T+D+N + +S + E S ++ + +S
Sbjct: 53 KFNRLNRLTTDFNVIVE-ALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRS 111
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAI 1091
VY++ P+ T +I+E ++ G++ ++ R+ + FV F+ I + +
Sbjct: 112 VYIKGFPTDATLDDIKEWLEDKGQVL----NIQMRRTLHKAFKGSIFVVFDSIESAKKFV 167
Query: 1092 QASPIQLAGRQVYIE 1106
+ + + I
Sbjct: 168 ETPGQKYKETDLLIL 182
|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 3/123 (2%)
Query: 1007 GVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR 1066
G S +S VY++ LP + + F+ I D +++
Sbjct: 1 GSSGSSGKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLD-IVEDSIYIA 59
Query: 1067 NRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE--RRPNTGSTSRGGRRGRG 1124
+ FVEF + + + A+ + R + + ++ +R +
Sbjct: 60 YGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQS 119
Query: 1125 RGS 1127
S
Sbjct: 120 GPS 122
|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 6/131 (4%)
Query: 996 SNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNF 1055
S + ++ + G + D + V++R LP T +I F
Sbjct: 12 SGLVPRGSHMASMTGG-QQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPL 70
Query: 1056 GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNTGST 1115
P V + D A VEF A+ + R YIE +T
Sbjct: 71 N---PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR--YIELFLNSTTGA 125
Query: 1116 SRGGRRGRGRG 1126
S G +
Sbjct: 126 SNGAYSSQVMQ 136
|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-08
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV-VGVCYAFVEFEDISGVQNAIQ 1092
+++ +P EI EE D + + D +AFVE+E A +
Sbjct: 11 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 70
Query: 1093 A---SPIQLAGRQVYIE------ERRPNTGSTSRGGRRG 1122
IQL G Q+ ++ + + T G G
Sbjct: 71 KLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVSGPSSG 109
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 11/93 (11%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ N P + T I + Q+ + + + + + +A+++ + ++
Sbjct: 120 LWMTNFPPSYTQRNIRDLLQDINVVALS-IRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 178
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGR 1125
+ +++ G + + P S GR
Sbjct: 179 LNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGR 211
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 1030 EVKSVYVRNLPSTVT-AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1088
E + + +RNL + + + E F+ FG I+ + ++ C AF+ FE+ +
Sbjct: 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 268
Query: 1089 NAIQASPIQLAGRQVYIE--ERRP 1110
A+Q + L R++ + +++P
Sbjct: 269 RALQMNRSLLGNREISVSLADKKP 292
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFEDISGVQ 1088
E+ +V V+NLP + ++ + F++ G I V V + K +A +EF G
Sbjct: 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPII--HVDVADSLKKNFR--FARIEFARYDGAL 95
Query: 1089 NAIQASPIQLAGRQVYIE 1106
AI + + ++ +
Sbjct: 96 AAITKTHKVVGQNEIIVS 113
|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V NLP +T E+ + F+ +G+ VF+ K G + F+ E + + A
Sbjct: 18 LFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKDK---G--FGFIRLETRTLAEIAKVE 70
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTSRG 1118
+ L G+Q+ + + TS
Sbjct: 71 LDNMPLRGKQLRVRFACHSASLTSGP 96
|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++V L + + EF FG I+ V+ +A++++E + Q A
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVKGDS------FAYIQYESLDAAQAAC 70
Query: 1092 QASPIQLAGRQVYIEERR 1109
+ G + +RR
Sbjct: 71 AK----MRGFPLGGPDRR 84
|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 1026 LDEGE--VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEF 1081
L EG+ +V+V + + EI F +G +K + + +R GV Y FV F
Sbjct: 2 LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVK-EVKIITDRT---GVSKGYGFVSF 57
Query: 1082 EDISGVQNAIQASPIQLAGRQVYIEE--RRPNTGSTSRGGR 1120
+ VQ ++ S I G+++ + R+ N + R
Sbjct: 58 YNDVDVQKIVE-SQINFHGKKLKLGPAIRKQNLSTYHVQPR 97
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 4e-08
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
VYV NL + E+E F +G ++ V+V +AFVEFED +A++
Sbjct: 75 KVYVGNLGNNGNKTELERAFGYYGPLR--SVWVARNPP----GFAFVEFEDPRDAADAVR 128
Query: 1093 A-SPIQLAGRQVYIEERRPNTGSTSRGGRR 1121
L G +V +E S G +R
Sbjct: 129 ELDGRTLCGCRVRVEL--------SNGEKR 150
|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Length = 97 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-08
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 1034 VYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+++ NLP V+ ++ F +G I + ++N + F++F++ V++AI+
Sbjct: 25 LFIGNLPLKNVSKEDLFRIFSPYGHIM--QINIKNA-------FGFIQFDNPQSVRDAIE 75
Query: 1093 A-SPIQLAGRQVYIEERRPNTGSTSRGGRR 1121
S G+++ +E S R
Sbjct: 76 XESQEMNFGKKLILEV--------SSSNAR 97
|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Length = 87 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-08
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC------YAFVEFEDIS 1085
+ +YV N+P +T + + F R+ G+ V+ V +AF+EF +
Sbjct: 7 RRLYVGNIPFGITEEAMMDFFNAQMRLG--GLTQAPGNPVLAVQINQDKNFAFLEFRSVD 64
Query: 1086 GVQNAIQASPIQLAGRQVYIEERRP 1110
A+ I G+ + I RRP
Sbjct: 65 ETTQAMAFDGIIFQGQSLKI--RRP 87
|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 112 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 1032 KSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
+ +++ NLP S + + + + +G+IK + + +R + AF+E E
Sbjct: 26 RVIHLSNLPHSGYSDSAVLKLAEPYGKIK-NYILMRMK------SQAFIEMETREDAMAM 78
Query: 1091 IQ---ASPIQLAGRQVYIE 1106
+ + GR V ++
Sbjct: 79 VDHCLKKALWFQGRCVKVD 97
|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-08
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIK-PDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
GE K++ + NL + T ++E F+ IK P +++ G YAF+EF
Sbjct: 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSK----G--YAFIEFASFEDA 66
Query: 1088 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
+ A+ + + ++ GR + +E + P S + G G
Sbjct: 67 KEALNSCNKREIEGRAIRLELQGPRG-SPNSGPSSG 101
|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-08
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---------GVCYA 1077
++ + ++YV+ L +VT ++ + F+ G +K + + + G A
Sbjct: 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG--DA 68
Query: 1078 FVEFEDISGVQNAIQA-SPIQLAGRQVYIEE--RRPNTGSTSRGG 1119
V +ED + A++ G ++ + ++P S G
Sbjct: 69 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSGPSSG 113
|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-08
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++VR P V E+ E F FG +K V+ +AFVEFE+ AI+
Sbjct: 34 LFVRPFPLDVQESELNEIFGPFGPMK----EVKILNG-----FAFVEFEEAESAAKAIEE 84
Query: 1094 -SPIQLAGRQVYIEERRP 1110
A + + + +
Sbjct: 85 VHGKSFANQPLEVVYSKL 102
|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 9e-08
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
V++R LP T +I F P V + D A VEF A+
Sbjct: 18 VHMRGLPYRATENDIYNFFSPL---NPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 74
Query: 1094 SPIQLAGRQVYIEERRPNTGSTSRGGRR 1121
+ R Y+E +T TS G
Sbjct: 75 DKANMQHR--YVELFLNSTAGTSGSGPS 100
|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 9e-08
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+ K ++V N+P ++ + F FG+I D + N + G + FV FE+ +
Sbjct: 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNERGSKG--FGFVTFENSAD 67
Query: 1087 VQNAIQA-SPIQLAGRQVYIEE--RRPNTGSTSRGG 1119
A + + GR++ + R T S G
Sbjct: 68 ADRAREKLHGTVVEGRKIEVNNATARVMTNSGPSSG 103
|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 1025 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI 1084
G +V +R P VT + E F +KP + + Y FV+F +
Sbjct: 4 GSSGTTCHTVKLRGAPFNVTEKNVME-F--LAPLKPVAIRIVRNAHGNKTGYIFVDFSNE 60
Query: 1085 SGVQNAIQASPIQLAGRQ--VYIEERRPNTG 1113
V+ A++ + + GR V+ E+ P++G
Sbjct: 61 EEVKQALKCNREYMGGRYIEVFREKSGPSSG 91
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
VK ++V + + + F+ +G+I+ + +R +AFV F+D V
Sbjct: 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIE-VIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 1091 IQASPIQLAGRQVYIE--ERRPNTGSTSRGGRRGR 1123
+ + G + + S + +RGR
Sbjct: 163 VIQKYHTVNGHNCEVRKALSKQEMAS-ASSSQRGR 196
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+ +++ +++ L T + F+ +G + D V +R+ + FV + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 1087 VQNAIQASPIQLAGRQV 1103
V A+ A P ++ GR V
Sbjct: 68 VDAAMNARPHKVDGRVV 84
|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+ V+N+P TV+ EI + F + + P V ++ + + A V FE A+
Sbjct: 18 IKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76
Query: 1094 -SPIQLAGRQVYIEERRPNTG 1113
+ + R ++ P++G
Sbjct: 77 LNDRPIGSR--KVKLSGPSSG 95
|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-07
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
++VRNL T + ++E+ F +G + + + + +AFV F
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLS-ELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 1090 AIQA---SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
A Q GR +++ ++ G G
Sbjct: 66 AYAEVDGQVFQ--GRMLHVLPSTIKKEASQSGPSSG 99
|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-07
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1091
V++ L VT I E F +G+IK R + YA+VEFE+ + A+
Sbjct: 7 VHIGRLTRNVTKDHIMEIFSTYGKIK-MIDMPVERMH-PHLSKGYAYVEFENPDEAEKAL 64
Query: 1092 QA-SPIQLAGRQVYIEERRP 1110
+ Q+ G+++
Sbjct: 65 KHMDGGQIDGQEITATAVLA 84
|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR--KDVVGVCYAFVEFEDISGVQN 1089
++ V NL + + F+ +GR+ D R K G +AFV F D Q+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVG-DVYIPREPHTKAPRG--FAFVRFHDRRDAQD 70
Query: 1090 AIQA-SPIQLAGRQVYIEERRPNTGSTSRGG 1119
A A +L GR++ ++ R S
Sbjct: 71 AEAAMDGAELDGRELRVQVARYGRRDLSGPS 101
|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-07
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
VYV NLP +++ + G + + R AF+ + D + Q A+
Sbjct: 21 DVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPR------RRAFLHYPDSAAAQQAVS 74
Query: 1093 A-SPIQLAGRQVYIEERRP 1110
++L + + R
Sbjct: 75 CLQGLRLGTDTLRVALARQ 93
|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---GVCYAFVEFEDISGVQ 1088
+ ++ NLP VT I+E F+ R + G + + EFED+ +
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNIS--AVRLPREPSNPERLKG--FGYAEFEDLDSLL 71
Query: 1089 NAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
+A+ + L +++ ++ G G
Sbjct: 72 SALSLNEESLGNKRIRVDVADQA-QDKDSGPSSG 104
|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 9/82 (10%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVF-VRNRKDVVGVCYAFVEFEDISGVQNA 1090
++ +RN+ I + + + + +++++ +AFV+
Sbjct: 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQL 69
Query: 1091 IQA-----SPIQLAGRQVYIEE 1107
+Q P+++ G+ + ++
Sbjct: 70 LQILQSLHPPLKIDGKTIGVDF 91
|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-07
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV---------GVCYA 1077
+ +++V+ L VT + + F+ G IK + + ++ G A
Sbjct: 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG--EA 66
Query: 1078 FVEFEDISGVQNAIQA 1093
V F+D + AI
Sbjct: 67 TVSFDDPPSAKAAIDW 82
|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-07
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQN 1089
+ VRN+P EI E F FG +K V + + G + FV+F +
Sbjct: 16 SKILVRNIPFQANQREIRELFSTFGELK--TVRLPKKMTGTGAHRGFGFVDFITKQDAKK 73
Query: 1090 AIQASP--IQLAGRQVYIEERRPNTGSTSRGG 1119
A A L GR++ +E S
Sbjct: 74 AFNALCHSTHLYGRRLVLEWADSEVTVQSGPS 105
|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-07
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRI------KPDGVFVRNRKDVVGVCYAFVEFEDI 1084
++VRNLP T ++++F G + +G +++ V+FE
Sbjct: 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENG---KSK------GCGVVKFESP 58
Query: 1085 SGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTS 1116
+ A + + ++L+GR++ + R +G +S
Sbjct: 59 EVAERACRMMNGMKLSGREIDVRIDRNASGPSS 91
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-07
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 8/135 (5%)
Query: 1009 SSHMPESGFEAVDDSLGLDEGEVKSVYVRNL-PSTVTAFEIEEEFQNFGRIKPDGVFVRN 1067
S +P GL + V NL P VT + F +G ++ + N
Sbjct: 12 SGLVPRGSHMGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFN 70
Query: 1068 RKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1126
+K+ A V+ D + Q A+ + +L G+ + I + R G+ +G
Sbjct: 71 KKE-----NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT 125
Query: 1127 SYQTDAPRGRFGGRG 1141
++P RF G
Sbjct: 126 KDYGNSPLHRFKKPG 140
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 8e-06
Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++++ N+P +V+ +++ F + G + F + + A ++ + A+
Sbjct: 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK-----MALIQMGSVEEAVQAL 206
Query: 1092 QA 1093
Sbjct: 207 ID 208
|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGV 1087
E ++V + T +I ++F +G IK + +R+ + G Y VE+E
Sbjct: 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKG--YTLVEYETYKEA 77
Query: 1088 QNAIQA-SPIQLAGRQVYIEE---RRPNTGSTSRGGRRGRGRGS 1127
Q A++ + L G+ + ++ R P G G RR R
Sbjct: 78 QAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDR 121
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFEDISGVQNAI 1091
++ V LP +T E+ F+ G I + R+ K YAFV+F Q AI
Sbjct: 5 NLIVNYLPQDMTDRELYALFRAIGPIN--TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 62
Query: 1092 QA-SPIQLAGRQVYIEERRP 1110
+ + I + +++ + RP
Sbjct: 63 KVLNGITVRNKRLKVSYARP 82
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV NLP T+T +++ F +G I +R++ AFV + Q AI A
Sbjct: 92 LYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 7/95 (7%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAI 1091
++V +P T + ++ E F+ +G + + +R+R FV F A
Sbjct: 6 MFVGQVPRTWSEKDLRELFEQYGAVY-EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64
Query: 1092 QASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1126
A L +V P + +
Sbjct: 65 NA----LHNMKVLPGMHHPIQMKPADSEKNNAVED 95
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 20/83 (24%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIK-------PDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+++ + T +I F +FG+I+ PDG +R AFV F +
Sbjct: 98 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG---LSR------GCAFVTFTTRAM 148
Query: 1087 VQNAIQA----SPIQLAGRQVYI 1105
Q AI+A ++ + +
Sbjct: 149 AQTAIKAMHQAQTMEGCSSPMVV 171
|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-07
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
+ ++YV L T+T ++ F FG I+ + V R+ AF++F +
Sbjct: 11 TITTLYVGGLGDTITETDLRNHFYQFGEIR--TITVVQRQQ-----CAFIQFATRQAAEV 63
Query: 1090 AIQASP--IQLAGRQVYI 1105
A + S + + GR++ +
Sbjct: 64 AAEKSFNKLIVNGRRLNV 81
|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Length = 139 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-07
Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 1008 VSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-- 1065
+ + + + ++++ V +P+TV ++ + F+ +G I+ +
Sbjct: 19 LQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR 78
Query: 1066 ---RNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRR 1121
++R Y FV+F+ S Q AI + + +++ + G
Sbjct: 79 ETRQSR------GYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAV 132
Query: 1122 GRGRG 1126
G G G
Sbjct: 133 GDGNG 137
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 5e-07
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
++ + ++V + V E EE F +G I D + ++ + FV ++
Sbjct: 83 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSADA 141
Query: 1087 VQNAIQASPIQLAGRQVYI 1105
V Q I R++ I
Sbjct: 142 VDRVCQNKFIDFKDRKIEI 160
|
| >1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-07
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1032 KSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
+ V++ + +++ + + FG I + + + AF+E Q A
Sbjct: 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVIS-NHLILNKI------NEAFIEMATTEDAQAA 68
Query: 1091 IQ---ASPIQLAGRQVYIE----ERRPNTGSTS 1116
+ +P + G+ V + +R +G +S
Sbjct: 69 VDYYTTTPALVFGKPVRVHLSQKYKRIKSGPSS 101
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+ V NLP ++T + EE + FG ++ V + + Y F E+ A
Sbjct: 98 LCVANLPPSLTQQQFEELVRPFGSLE-RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156
Query: 1094 -SPIQLAGRQVYIE--ERRPNTGSTSRG 1118
L R +Y+ + T +
Sbjct: 157 LLGKPLGPRTLYVHWTDAGQLTPALLHS 184
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+ + +R LP VT E+ + ++ FV K AFV +
Sbjct: 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE---LKYCFVDKYK-----GTAFVTLLNGEQ 69
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRPNT 1112
+ AI A +L R++ ++ + +
Sbjct: 70 AEAAINAFHQSRLRERELSVQLQPTDA 96
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFE-IEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFED 1083
+ + V LP + + F + G +A +E+E
Sbjct: 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSP----TFCQLACGQDGQLKGFAVLEYET 235
Query: 1084 ISGVQNAIQA-SPIQLAGRQVYI 1105
+ A Q + L G + +
Sbjct: 236 AEMAEEAQQQADGLSLGGSHLRV 258
|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 6e-07
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQN 1089
++ V NL +++E F+ FG I +++ G +AF+ F
Sbjct: 16 ATIRVTNLSEDTRETDLQELFRPFGSIS-RIYLAKDKT--TGQSKGFAFISFHRREDAAR 72
Query: 1090 AIQA-SPIQLAGRQVYIEERRPNTGSTSRGG 1119
AI S + +E +P+T S G
Sbjct: 73 AIAGVSGFGYDHLILNVEWAKPSTNSGPSSG 103
|
| >2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+ V+N+P TV+ EI + F + + P V ++ + + A V FE A+
Sbjct: 18 IKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76
Query: 1094 -SPIQLAGRQVYIE 1106
+ + R+V +
Sbjct: 77 LNDRPIGSRKVKLV 90
|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 7e-07
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQN 1089
++V+V NL + V + E F G + V KD G + FV F+ V
Sbjct: 17 RTVFVGNLEARVREEILYELFLQAGPL----TKVTICKDREGKPKSFGFVCFKHPESVSY 72
Query: 1090 AIQA-SPIQLAGRQVYI 1105
AI + I+L GR + +
Sbjct: 73 AIALLNGIRLYGRPINV 89
|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 7e-07
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 1026 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVG--VCYAFVEFED 1083
L + V +R LP T TA E+ F I + G AFV F
Sbjct: 18 LSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFAC 77
Query: 1084 ISGVQNAIQASPIQLAGRQVYIE-------ERRPNTGSTSRGGRRG 1122
QNA++ L R + + ++ N S++ G G
Sbjct: 78 EEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSASGPSSG 123
|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 17/102 (16%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIK-------PDGVFVRNRKDVVGVCYAFVEFEDISG 1086
V+V NL V +++E F G + DG ++R V FE
Sbjct: 18 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDG---KSR------GIGTVTFEQSIE 68
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGS 1127
AI + L R ++++ +
Sbjct: 69 AVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQSG 110
|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 20/107 (18%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEF 1081
D E K+V++RNL + E Q FG +K V + K G AF +F
Sbjct: 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLK-YVRVVLHPDTEHSK---G--CAFAQF 64
Query: 1082 EDISGVQNAIQASPIQ-------LAGRQVYIEE--RRPNTGSTSRGG 1119
Q + A+ ++ L GRQ+ ++ R S G
Sbjct: 65 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAASGPSSG 111
|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 1/113 (0%)
Query: 994 QQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQ 1053
++ SS + G G + S D V +R LP T EI + F
Sbjct: 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFS 64
Query: 1054 NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1106
I P+G+ + + AFV+F + A+ ++ R + +
Sbjct: 65 GLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+ VYV ++ + I + F FG IK + + +AFVE+E
Sbjct: 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIK-SIDMSWDSVTMKHKGFAFVEYEVPEA 82
Query: 1087 VQNAIQA-SPIQLAGRQVYI 1105
Q A++ + + L GR + +
Sbjct: 83 AQLALEQMNSVMLGGRNIKV 102
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 1008 VSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN 1067
V + + D L + +YV ++ ++ +I+ F+ FG+IK R+
Sbjct: 102 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK-SATLARD 160
Query: 1068 RKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE--ERRPNTGST 1115
Y F+E+E Q+A+ + + L G+ + + P T
Sbjct: 161 PTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLT 211
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 18/181 (9%)
Query: 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 378
E+ +KK + + + A + + E++ + GD+ + +
Sbjct: 114 EDDFKKVLKSNPSENEEKEAQS------QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167
Query: 379 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 438
+ L C E C G A + L A+ + E + Q GD
Sbjct: 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGD 226
Query: 439 IDGARAAYQLV------HTETSPGL-----LEAIIKHANMERRLGNLEDAFSLYEQAIAI 487
+ + + + H L +I+ A R G DA S YE +
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286
Query: 488 E 488
E
Sbjct: 287 E 287
|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Length = 156 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 1004 PESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV 1063
P S P + A+ + +VYV + T ++ + ++ G +
Sbjct: 28 PVRQEPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVEL 87
Query: 1064 FV-------RNRKDVVGVCYAFVEFEDISGVQNAIQASP-IQLAGRQVYIEERRPNTGST 1115
+++ G YA V + V ++ P L G +V + S
Sbjct: 88 KFAENRANGQSK----G--YAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQ 141
Query: 1116 SRGGRRGRGRGSYQTDAPR 1134
R R PR
Sbjct: 142 FEAQARKRE----CVRVPR 156
|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGV 1087
E +++ LP + T E+EE + G +K +R + G A+VE+E+ S
Sbjct: 16 EKHKLFISGLPFSCTKEELEEICKAHGTVK----DLRLVTNRAGKPKGLAYVEYENESQA 71
Query: 1088 QNAIQA-SPIQLAGRQ--VYIEERRPNTG 1113
A+ + + V I P++G
Sbjct: 72 SQAVMKMDGMTIKENIIKVAISNSGPSSG 100
|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 96 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+++ NL + + + F FG I +R+ YAF+ F AI+
Sbjct: 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 66
Query: 1093 A-SPIQLAGRQVYIEE--RRPNTGSTSRGG 1119
A + L R + + ++ + GS G
Sbjct: 67 AMNGQYLCNRPITVSYAFKKDSKGSGPSSG 96
|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-06
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-----RNRKDVVGVCYAFVEFEDISGVQ 1088
+Y+R L T ++ + Q +G+I + + + Y FV+F+ S Q
Sbjct: 8 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK------GYGFVDFDSPSAAQ 61
Query: 1089 NAIQA-SPIQLAGRQVYIEERRPNTG 1113
A+ A + + ++ P++G
Sbjct: 62 KAVTALKASGVQAQM--AKQSGPSSG 85
|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 3/93 (3%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
V V +P + ++ + F + D V + V+F A++
Sbjct: 19 VSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKR 75
Query: 1094 SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1126
+ + + R V + + G
Sbjct: 76 NRMLMIQRYVEVSPATERQWVAAGGHITSGPSS 108
|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFG----RIKPDGVFVRNRKDVVGVC--YAFVEFEDIS 1085
+ ++ NLP VT I+E F+ R+ R + + + EFED+
Sbjct: 20 YTAFLGNLPYDVTEESIKEFFRGLNISAVRL------PREPSNP-ERLKGFGYAEFEDLD 72
Query: 1086 GVQNAIQASPIQLAGRQVYIEERRP 1110
+ +A+ + L R++ ++
Sbjct: 73 SLLSALSLNEESLGNRRIRVDVADQ 97
|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV---RNRKDVVGVCYAFVEFEDISGVQNA 1090
++++NL ++ + + F FG I V ++ Y FV FE + A
Sbjct: 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK------GYGFVHFETQEAAERA 61
Query: 1091 IQA-SPIQLAGRQVYIEERRPNTGSTSRGGRR 1121
I+ + + L R+V++ + + G R
Sbjct: 62 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 93
|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 1006 SGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV 1065
SG S + + FE V + + +VY + S +T + + F FG+I + V
Sbjct: 3 SGSSGNTKQLRFEDVVNQ---SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM--EIRV 57
Query: 1066 RNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGG 1119
K Y+FV F +AI + + + G V + + TS
Sbjct: 58 FPEK-----GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTSGPS 107
|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 1022 DSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRI-KPDGVFVRNRKDVVGVCYAFVE 1080
LG + GE V +R LP + + +++ + GV ++ AFVE
Sbjct: 8 MMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVE 67
Query: 1081 FEDISGVQNAIQASPIQLAGRQVYI-----EERRPNTGSTSRGGRRGRGRG 1126
E V+ A++ + R + + E + G G
Sbjct: 68 LESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSASGPSSG 118
|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 1032 KSVYVRNLPSTVTAFEIEEE----FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
+ V + N+ V +++ + G I + + A++ F
Sbjct: 30 QVVLITNINPEVPKEKLQALLYALASSQGDI----LDIVVDLSDDNSGKAYIVFATQESA 85
Query: 1088 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGG 1119
Q ++A G + I + G
Sbjct: 86 QAFVEAFQGYPFQGNPLVITFSETPQSQVAEDG 118
|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
D V+V +L +T +I+ F FGRI D V++ Y FV F +
Sbjct: 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWD 69
Query: 1087 VQNAIQA-SPIQLAGRQVYIEE--RRPNTGSTSRGGRRGRGRGSY 1128
+NAIQ L GRQ+ R+P ++ + S
Sbjct: 70 AENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQSGPSS 114
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++++ N+P +V+ +++ F + G + F + + A ++ + A+
Sbjct: 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR-----KMALIQMGSVEEAVQAL 175
Query: 1092 QA 1093
Sbjct: 176 ID 177
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 1034 VYVRNL-PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+ V NL P VT + F +G ++ + N+K A V+ D + Q A+
Sbjct: 6 LLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFNKK-----ENALVQMADGNQAQLAMS 59
Query: 1093 A-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRF 1137
+ +L G+ + I + R G+ +G ++P RF
Sbjct: 60 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRF 105
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 18/181 (9%)
Query: 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 378
E+ +KK + + + A + + E++ + D+ + +
Sbjct: 91 EDDFKKVLKSNPSEQEEKEAES------QLVKADEMQRLRSQALDAFDGADYTAAITFLD 144
Query: 379 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 438
+ L C E C G A + L A+ E + Q GD
Sbjct: 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK-LKSDNTEAFYKISTLYYQLGD 203
Query: 439 IDGARAAYQLV------HTETSPGL-----LEAIIKHANMERRLGNLEDAFSLYEQAIAI 487
+ + + + H L +I+ A R G DA S YE +
Sbjct: 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263
Query: 488 E 488
E
Sbjct: 264 E 264
|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Length = 105 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V L + ++ FQ FG I V D AFV+F + Q AI A
Sbjct: 18 LFVGMLNKQQSEEDVLRLFQPFGVID--ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75
Query: 1094 ----SPIQLAGRQVYI------EERRPNTG 1113
+ A + + +E P++G
Sbjct: 76 LHGSQTMPGASSSLVVKFADTDKESGPSSG 105
|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Length = 88 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-06
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+ V+NLP E+ + +++ +V K AFV + QNAIQ
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYDLKY---CYVDRNKR-----TAFVTLLNGEQAQNAIQM 59
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
G+ + + + +P G G
Sbjct: 60 FHQYSFRGKDLIV-QLQPTDALLCSGPSSG 88
|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-06
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ +NLP+ A EI+E F FG + V + A VEF + + A
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLG--RVLLPEGG-----ITAIVEFLEPLEARKAF 63
Query: 1092 QA-SPIQLAGRQVYIE 1106
+ + + +Y+E
Sbjct: 64 RHLAYSKFHHVPLYLE 79
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 6e-06
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
K+++V + T ++ EF+ +G IK V +++ YAF+E+E + +A
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIK-RIHMVYSKRSGKPRGYAFIEYEHERDMHSAY 161
Query: 1092 -QASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDG 1150
A ++ GR+V ++ R T R R G G G + G S D
Sbjct: 162 KHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDE 221
Query: 1151 GDYNRSRGNGFYQRGSQ 1167
+ R +
Sbjct: 222 RPGPSPLPHRDRDRDRE 238
|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAI 1091
+Y+ NLP ++ E+E + FG++ + R +D G F E + I
Sbjct: 28 LYISNLPLSMDEQELENMLKPFGQV----ISTRILRDSSGTSRGVGFARMESTEKCEAVI 83
Query: 1092 QA-SPIQLAGRQVYIEERRP 1110
+ + P
Sbjct: 84 GHFNGKFIKTPPGVSAPTEP 103
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 7e-06
Identities = 22/129 (17%), Positives = 33/129 (25%), Gaps = 2/129 (1%)
Query: 640 GAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPP--ATQAQAQQWNQQAAYGAYSAYGSSY 697
G + + Q+P AAG PP A + QQ A
Sbjct: 17 GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76
Query: 698 PTPQTSVPQNAAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDS 757
T + + P AY +G Q QQ A+ + +
Sbjct: 77 TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136
Query: 758 TESASSMLD 766
+L
Sbjct: 137 QLYPIDLLT 145
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 7e-05
Identities = 17/110 (15%), Positives = 23/110 (20%), Gaps = 5/110 (4%)
Query: 634 MAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAY 693
M+ AQ Y + P P P A Q S
Sbjct: 1 MSHHKKRVYPQAQL---QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMG 57
Query: 694 GSSYPTPQTSVPQNAAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQF 743
+ TP Q + + V QP + Q
Sbjct: 58 QQQFLTPAQ--EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQM 105
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-04
Identities = 11/104 (10%), Positives = 16/104 (15%)
Query: 639 SGAPSPAQSLMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAYGSSYP 698
+ P Q V +Q +QQ S
Sbjct: 27 AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86
Query: 699 TPQTSVPQNAAYGAYPPAYPAQVGSYFVGQYYQVLQQQPDLVHQ 742
P P + Q + Q
Sbjct: 87 NVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 2/121 (1%)
Query: 368 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 427
D + + + W+ G A+ R + PE
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVA 61
Query: 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 487
R + A Q ++ +P + + G E A + Y +A +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQA-SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120
Query: 488 E 488
Sbjct: 121 L 121
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 32/146 (21%), Positives = 44/146 (30%), Gaps = 3/146 (2%)
Query: 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416
W D GD +R L +PE R A L +A+
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85
Query: 417 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476
P I L+ E G + A AAY H + P + N RRL +
Sbjct: 86 AA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAH-QLLPEEPYITAQLLNWRRRLCDWRA 143
Query: 477 AFSLYEQA-IAIEKGKEHSQTLPMLY 501
L Q A+ +G + L
Sbjct: 144 LDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 24/208 (11%), Positives = 56/208 (26%), Gaps = 19/208 (9%)
Query: 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 495
D + P A + A+ E +G+ ++ +A+ G H +
Sbjct: 2 TADGPRELLQLRAA-VRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPE 58
Query: 496 TLPML--YAQYSRFLHLVSRNAEKARQILVDSLD-HVQL------SKPLLEALIHFE-SI 545
+ L + + ++A + + L + A + +
Sbjct: 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118
Query: 546 QSSPKQIDFLEQLVD------KFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIK 599
Q P++ QL++ + + S A + + FL A
Sbjct: 119 QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQL 178
Query: 600 KAEDRHARLFLPHRSTSELRKRHAEDFL 627
A+ + ++ L
Sbjct: 179 ACARTRAQAIAASVRPLAPTRVRSKGPL 206
|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 8e-06
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRI-KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+ + LP + T ++ F + +G+ +D A +E E VQ A++
Sbjct: 14 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73
Query: 1093 ASPIQLAGRQVYIE 1106
+ + R Y+E
Sbjct: 74 KHRMYMGQR--YVE 85
|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-06
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQN 1089
K V L V +++ + +G ++ + + + + A V F G +
Sbjct: 7 KEVTFARLNDNVRETFLKDMCRKYGEVE-EVEILLHPRT--RKHLGLARVLFTSTRGAKE 63
Query: 1090 AIQA-SPIQLAGRQVYIE 1106
++ + G ++ +
Sbjct: 64 TVKNLHLTSVMGNIIHAQ 81
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
++ V LP +T E F + G I+ VR++ + Y FV + D + AI
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIE-SCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 1093 A-SPIQLAGRQVYIEERRP 1110
+ ++L + + + RP
Sbjct: 63 TLNGLRLQTKTIKVSYARP 81
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV LP T+T E+E+ F +GRI + + ++ V F+ F+ + AI+
Sbjct: 91 LYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149
Query: 1094 ---SPIQLAGRQVYI 1105
A + +
Sbjct: 150 LNGQKPSGATEPITV 164
|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Length = 115 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ +LP ++ + F FG + VF +++ + C+ FV +++ Q AIQ+
Sbjct: 28 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF-IDKQTNLSKCFGFVSYDNPVSAQAAIQS 86
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTSR 1117
+ Q+ +++ ++ +R S S
Sbjct: 87 MNGFQIGMKRLKVQLKRSKNDSKSG 111
|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
+ + K ++V N+P ++ + F FG+I D + N + G + FV FE+ +
Sbjct: 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNERGSKG--FGFVTFENSADA 82
Query: 1088 QNAIQA-SPIQLAGRQVYIEERRP 1110
A + + GR++ +
Sbjct: 83 DRAREKLHGTVVEGRKIEVNNATA 106
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 1e-05
Identities = 24/174 (13%), Positives = 44/174 (25%), Gaps = 8/174 (4%)
Query: 922 EIPASFQTDVSPVQPPPAPAVEEPVDEPQRKTYASILRVSKSQSTSFVATQPSFTKTAST 981
++ +F + + E P + + + V Q +
Sbjct: 96 KMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMH 155
Query: 982 TSDWNPAPQPTTQQSNYTSSFVPE--SGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNL 1039
P P + G + + +++ NL
Sbjct: 156 HMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL 215
Query: 1040 PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
P + F F K + V R D+ AFVEF++ A A
Sbjct: 216 PEETNELMLSMLFNQFPGFK-EVRLVPGRHDI-----AFVEFDNEVQAGAARDA 263
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 18/150 (12%)
Query: 1032 KSVYVRNLPSTVTAFEIEEE----FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
++Y+ NL + E+++ F FG+I + + + + AFV F+++S
Sbjct: 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQI----LDILVSRSLKMRGQAFVIFKEVSSA 65
Query: 1088 QNAIQA--------SP--IQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRF 1137
NA+++ P IQ A I + T R R S +T A +
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAV 125
Query: 1138 GGRGLGRGSAQDGGDYNRSRGNGFYQRGSQ 1167
G G G R
Sbjct: 126 QGGGATPVVGAVQGPVPGMPPMTQAPRIMH 155
|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEFEDISGVQ 1088
++V LP T + + F+ FG I+ + V + +R + Y FV D + +
Sbjct: 20 IFVGGLPYHTTDASLRKYFEGFGDIE-EAVVITDRQTGKSR-----GYGFVTMADRAAAE 73
Query: 1089 NAIQASPIQLAGRQVYIEE--RRPNTGSTSRGGRRGRGRGS 1127
A + + GR+ + S G G S
Sbjct: 74 RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVSGPS 114
|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFG----RIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
+ YV NLP +I+ F++ R+ D + + G + +VEF+++ +
Sbjct: 16 YTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFK----G--FCYVEFDEVDSL 69
Query: 1088 QNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1126
+ A+ L R + ++ + + G G
Sbjct: 70 KEALTYDGALLGDRSLRVDIAEG-----RKQDKSGPSSG 103
|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+ Y+ N+P T ++ FQNFG I K F++++ I
Sbjct: 29 TAYIGNIPHFATEADLIPLFQNFGFIL--DFKHYPEK-----GCCFIKYDTHEQAAVCIV 81
Query: 1093 A 1093
A
Sbjct: 82 A 82
|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
K +Y++NL VT ++ F F K AF+ F + A+
Sbjct: 26 KVLYLKNLSPRVTERDLVSLFARFQEKK-GPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 84
Query: 1092 QA-SPIQLAGRQVYIEE---RRPNTGSTSRG 1118
+ +L G+ + IE ++ + S G
Sbjct: 85 HLVNGYKLYGKILVIEFGKNKKQRSSGPSSG 115
|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 1023 SLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFE 1082
S G + ++V +P E+ E F+ FG + + V + + + + F+ FE
Sbjct: 2 SSGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVT-EVVMIYDAEKQRPRGFGFITFE 60
Query: 1083 DISGVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
D V A+ + G++V ++ P S S G G
Sbjct: 61 DEQSVDQAVNMHFHDIMGKKVEVKRAEPR-DSKSSGPSSG 99
|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 19/101 (18%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDI 1084
+ +YV L V + F FG I + + ++R G +AFVEFE
Sbjct: 13 RVLYVGGLAEEVDDKVLHAAFIPFGDIT--DIQIPLDYETEKHR----G--FAFVEFELA 64
Query: 1085 SGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRG 1124
AI + +L GR + + +P + G
Sbjct: 65 EDAAAAIDNMNESELFGRTIRVNLAKP---MRIKESGPSSG 102
|
| >2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 124 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
V + ++N +T + G+++ +F RN A VEFE + Q A
Sbjct: 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGI------QAMVEFESVLCAQKA 78
Query: 1091 IQAS---PIQLAGRQVYIEERRPNTGSTSRGGRRGR 1123
A I + IE RP + R
Sbjct: 79 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSW 114
|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 8/152 (5%)
Query: 969 VATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDE 1028
+ + + P N + + + F++ E
Sbjct: 27 IKLNRNQRRVNRGGGPRRNRPAIARGGRNRPAPYSRPKPLPDKWQHDLFDSGCGGGEGVE 86
Query: 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISG 1086
K + V NL V+ +I+E F FG +K D G A V FE +
Sbjct: 87 TGAK-LLVSNLDFGVSDADIQELFAEFGTLK----KAAVDYDRSGRSLGTADVHFERRAD 141
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSR 1117
A++ + L GR + I+
Sbjct: 142 ALKAMKQYKGVPLDGRPMDIQLVASQIDLEHH 173
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVG--VCYAFVEFEDISGVQN 1089
+ +YV NL +T +++ FQ G I ++ D V YAFVE+
Sbjct: 1 RVLYVGNLDKAITEDILKQYFQVGGPI----ANIKIMIDKNNKNVNYAFVEYHQSHDANI 56
Query: 1090 AIQA-SPIQLAGRQVYI 1105
A+Q + Q+ V I
Sbjct: 57 ALQTLNGKQIENNIVKI 73
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 1026 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDIS 1085
+ +++V +L V + F++F V + + + Y FV F
Sbjct: 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQD 140
Query: 1086 GVQNAIQA-SPIQLAGRQVYI 1105
QNA+ + L GR + I
Sbjct: 141 DAQNAMDSMQGQDLNGRPLRI 161
|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
G S+++ +L + I F G +RNR + Y FVEF D++
Sbjct: 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLAT 64
Query: 1087 VQNAIQA 1093
+ +
Sbjct: 65 AEKCLHK 71
|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDIS 1085
D+G+ +++YV NL VT I + F G K + + Y FVEF +
Sbjct: 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK----SCKMITEHTSNDPYCFVEFYEHR 66
Query: 1086 GVQNAIQA-SPIQLAGRQVYIEERRP----NTGSTS 1116
A+ A + ++ G++V + +G +S
Sbjct: 67 DAAAALAAMNGRKILGKEVKVNWATTPSSQKSGPSS 102
|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-05
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV-CYAFVEFEDIS 1085
+ V+V LP + EI F+ FG + D K YAF+ F++ S
Sbjct: 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEES 63
Query: 1086 GVQNAIQASPIQLAGRQVYIEERRP 1110
VQ I A + + +
Sbjct: 64 SVQALIDACLEEDGKLYLCVSSPTI 88
|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVF----VRNRKDVVGVCYAFVEFEDISGVQN 1089
+YV+NL V +++ F + + +R K+ AF+ +
Sbjct: 48 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAK 107
Query: 1090 AIQA-SPIQLAGRQVYIEERRPNTGSTSR--GGRR 1121
A++ + L G+ + ++ R G R+
Sbjct: 108 ALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRK 142
|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ V L T ++ E F +G I D V +++ +AFV FE++ + A
Sbjct: 47 CCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 105
Query: 1092 QA-SPIQLAGRQVYIEE---RRPN 1111
+ + ++L GR++ ++ +RP+
Sbjct: 106 ERANGMELDGRRIRVDFSITKRPH 129
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 1025 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFED 1083
+ S+YV +L VT + E+F G I + V R+ + YA+V F+
Sbjct: 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPIL--SIRVCRDMITRRSLGYAYVNFQQ 66
Query: 1084 ISGVQNAIQA-SPIQLAGRQVYI 1105
+ + A+ + + G+ V I
Sbjct: 67 PADAERALDTMNFDVIKGKPVRI 89
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 8/109 (7%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV--RNRKDVVGVCYAFVEFEDISGVQNA 1090
+++++NL ++ + + F FG I V K Y FV FE + A
Sbjct: 105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK-----GYGFVHFETQEAAERA 159
Query: 1091 IQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFG 1138
I+ + + L R+V++ + + G R + Y G G
Sbjct: 160 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFYPYDVPDYAGSSG 208
|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 4e-05
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-----GVCYAFVEFEDISG 1086
+VYV L V+ + E F G + KD V G Y FVEF
Sbjct: 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVN----THMPKDRVTGQHQG--YGFVEFLSEED 69
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
AI+ I+L G+ + + + + G G
Sbjct: 70 ADYAIKIMDMIKLYGKPIRVNKASAHN-KNLSGPSSG 105
|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1091
+ V NL V+ +I+E F FG +K D G A V FE + A+
Sbjct: 38 LLVSNLDFGVSDADIQELFAEFGTLK----KAAVDYDRSGRSLGTADVHFERRADALKAM 93
Query: 1092 QA-SPIQLAGRQVYIEERRPNT 1112
+ + L GR + I+
Sbjct: 94 KQYKGVPLDGRPMDIQLVASQI 115
|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEFEDISG 1086
+SV+V N+P T ++++ F G + V +R K Y F E++D
Sbjct: 9 RSVFVGNIPYEATEEQLKDIFSEVGPVV-SFRLVYDRETGKPKG-----YGFCEYQDQET 62
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGS 1127
+A++ + + +GR + ++ ++ + G G+
Sbjct: 63 ALSAMRNLNGREFSGRALRVDNAASE---KNKEELKSLGTGA 101
|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDISG 1086
++V L +E+ F +G+I V V R+R G + FV FE+I
Sbjct: 15 LFVGGLSFDTNEQSLEQVFSKYGQIS--EVVVVKDRETQRSR----G--FGFVTFENIDD 66
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGR 1120
++A+ A + + GRQ+ +++ ++ + S
Sbjct: 67 AKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSGPSS 101
|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGV 1087
E ++V ++ EI+E+F ++G IK + +R+ G YA VE+E
Sbjct: 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKG--YALVEYETHKQA 127
Query: 1088 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1123
A +A + ++ G+ + ++ + + R
Sbjct: 128 LAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRR 164
|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 6e-05
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+ +RN+P + ++ +G ++ N V + + A+
Sbjct: 18 LQIRNIPPHLQWEVLDSLLVQYGVVE--SCEQVNTDSETA--VVNVTYSSKDQARQALDK 73
|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Length = 97 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-05
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 1032 KSVYVRNLPSTVTAFEIEEE----FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
++Y+ NL + E+++ F FG+I + + + + AFV F+++S
Sbjct: 9 HTIYINNLNEKIKKDELKKSLHAIFSRFGQI----LDILVSRSLKMRGQAFVIFKEVSSA 64
Query: 1088 QNAIQA-SPIQLAGRQVYIE 1106
NA+++ + + I+
Sbjct: 65 TNALRSMQGFPFYDKPMRIQ 84
|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 8e-05
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 17/103 (16%)
Query: 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRI-------KPD-GVFVRNRKDVVGVCYAFV 1079
++++NL + T ++ F G I K + + + + FV
Sbjct: 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSM------GFGFV 55
Query: 1080 EFEDISGVQNAIQA-SPIQLAGRQVYIE--ERRPNTGSTSRGG 1119
E++ Q A++ + G ++ + ER S G
Sbjct: 56 EYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPASGPSSG 98
|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Length = 135 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 987 PAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAF 1046
+ S + ++ D + S+ V NL +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPD 62
Query: 1047 EIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1098
+ F+ +GR+ V++ +R G +AFV F D ++A+ A L
Sbjct: 63 TLRRVFEKYGRVG--DVYIPRDRYTKESR----G--FAFVRFHDKRDAEDAMDAMDGAVL 114
Query: 1099 AGRQVYIEERRPN 1111
GR++ ++ R
Sbjct: 115 DGRELRVQMARYG 127
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++ N P VT E G +P V V + K +E++ S +
Sbjct: 126 LHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERS-SSGLLEWDSKSDALETLGF 184
|
| >1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Length = 164 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 8e-05
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
+ V + V NL VT + + F FG + F +N + A +++ D
Sbjct: 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQ-----FQALLQYADPVSA 97
Query: 1088 QNAIQAS 1094
Q+A +
Sbjct: 98 QHAKLSL 104
|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-05
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
G V+V +L +T I F FGRI D V++ Y FV F +
Sbjct: 2 PLGSHFHVFVGDLSPEITTAAIAAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWD 60
Query: 1087 VQNAIQA-SPIQLAGRQVYIEE--RRP 1110
+NAIQ L GRQ+ R+P
Sbjct: 61 AENAIQQMGGQWLGGRQIRTNWATRKP 87
|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDI 1084
+YV +L +T + F+ FG+I + + R++ G Y F+ F D
Sbjct: 6 SGLYVGSLHFNITEDMLRGIFEPFGKID--NIVLMKDSDTGRSK----G--YGFITFSDS 57
Query: 1085 SGVQNAIQA-SPIQLAGRQVYIEE--RRPNTGSTSRGG 1119
+ A++ + +LAGR + + R + GS G
Sbjct: 58 ECARRALEQLNGFELAGRPMRVGHVTERLDGGSGPSSG 95
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 9e-05
Identities = 31/203 (15%), Positives = 69/203 (33%), Gaps = 14/203 (6%)
Query: 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414
++ +N + G+ + V+LY + L + ++ G + A A
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69
Query: 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 474
+ + + ++ D+ GA Y + +P +A A++ + GN+
Sbjct: 70 IRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRA-IQINPAFADAHSNLASIHKDSGNI 127
Query: 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA------EKARQILVDSLDH 528
+A + Y A+ ++ P Y + L +V +K I+ D L+
Sbjct: 128 PEAIASYRTALKLKPD------FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Query: 529 VQLSKPLLEALIHFESIQSSPKQ 551
+L + + K
Sbjct: 182 NRLPSVHPHHSMLYPLSHGFRKA 204
|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 1023 SLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFE 1082
S G+ + + +++ +P + +++ F+ FG+I + +++R + AF+ +
Sbjct: 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY-ELTVLKDRFTGMHKGCAFLTYC 63
Query: 1083 DISGVQNAIQA----SPIQLAGRQV---YIEERRPNTGSTSRG 1118
+ A A + R + + S G
Sbjct: 64 ERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSGPSSG 106
|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 9e-05
Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 20/120 (16%)
Query: 990 QPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIE 1049
P + + S + + +YV L V +
Sbjct: 30 LPESVAYTCVNCTERHVDGGSGGSGGSGGSATTK--------RVLYVGGLAEEVDDKVLH 81
Query: 1050 EEFQNFGRIKPDGVFVRNRKDVV-----GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1103
F FG I ++ D G +AFVEFE AI + +L GR +
Sbjct: 82 AAFIPFGDI----TDIQIPLDYETEKHRG--FAFVEFELAEDAAAAIDNMNESELFGRTI 135
|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Length = 118 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-----RNRKDVVGVCYAFVEFEDISGVQ 1088
+++ +LP T ++ F FG + VF+ ++ C+ FV F++ Q
Sbjct: 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSK------CFGFVSFDNPDSAQ 96
Query: 1089 NAIQA-SPIQLAGRQVYIEERR 1109
AI+A + Q+ +++ ++ ++
Sbjct: 97 VAIKAMNGFQVGTKRLKVQLKK 118
|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Length = 90 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV-FVRNR-----KDVVGVCYAFVEFEDISG 1086
++Y+ NL T ++ E + G + F NR K G +A V +
Sbjct: 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSK---G--FALVGVGSEAS 57
Query: 1087 VQNAIQASP-IQLAGRQVYIEERRPNTGSTSR 1117
+ + P +L G+ +
Sbjct: 58 SKKLMDLLPKRELHGQNPVVTPSNKLEHHHHH 89
|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
K+++V+ L T ++E F R + D ++ G + FV+F
Sbjct: 14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSK----G--FGFVDFNSEEDA 67
Query: 1088 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGR 1120
+ A +A ++ G +V ++ +P S
Sbjct: 68 KAAKEAMEDGEIDGNKVTLDWAKPKGEGGSGPSS 101
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 20/170 (11%), Positives = 47/170 (27%), Gaps = 16/170 (9%)
Query: 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 381
++ E + A+ + +NY F+ + + +
Sbjct: 81 FQTEMEPKLADEEYRKALA-----SDSRNA---RVLNNYGGFLYEQKRYEEAYQRLLEA- 131
Query: 382 IACANYPEYWIRYV---LCMEASGSMDLAHNALARATHVFVK-RLPEIHLFAARFKEQNG 437
YPE + L A ++ + + P + L A +
Sbjct: 132 SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS--LRLNRNQPSVALEMADLLYKER 189
Query: 438 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 487
+ AR Y L + +++ + + + + A S Q +
Sbjct: 190 EYVPARQYYDLFA-QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238
|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 88 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
V+V +T E+ E F +G + D + + +AFV F D Q+
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVM-DVFIPKPFR-----AFAFVTFADDQIAQSLCGE 61
Query: 1094 SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
I + G V+I P +++ G G
Sbjct: 62 DLI-IKGISVHISNAEPK-HNSNSGPSSG 88
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 10/97 (10%), Positives = 28/97 (28%), Gaps = 1/97 (1%)
Query: 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALA 412
+++ ++Y G + + I +Y + + A + A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94
Query: 413 RATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449
A + + + + A+ ++LV
Sbjct: 95 VAFALGKND-YTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFEDI 1084
+ V L T ++ E F +G I V + R+R +AFV FE++
Sbjct: 16 CCLGVFGLSLYTTERDLREVFSKYGPI--ADVSIVYDQQSRRSR------GFAFVYFENV 67
Query: 1085 SGVQNAIQA-SPIQLAGRQVYIEERR 1109
+ A + + ++L GR++ +
Sbjct: 68 DDAKEAKERANGMELDGRRIRVSGPS 93
|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEFEDISG 1086
+ VY+ ++P T +I + N G + + + + K G YAF+EF D+
Sbjct: 3 RVVYLGSIPYDQTEEQILDLCSNVGPVI-NLKMMFDPQTGRSK---G--YAFIEFRDLES 56
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1123
+A++ + QL R + + S
Sbjct: 57 SASAVRNLNGYQLGSRFLKCGYSSNSDISGVSLEHHHH 94
|
| >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Length = 136 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 1006 SGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV 1065
S ++S LG + GE V +R LP + + +++ + I V
Sbjct: 19 SHMASMTGGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCT-IHDGAAGV 77
Query: 1066 RNRKDVVGVC--YAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1106
G AFVE V+ A++ + R + +
Sbjct: 78 HFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120
|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1091
+ V NL V+ +I+E F FG +K D G A V FE + A+
Sbjct: 32 LLVSNLDFGVSDADIQELFAEFGTLK----KAAVHYDRSGRSLGTADVHFERKADALKAM 87
Query: 1092 QA-SPIQLAGRQVYIE 1106
+ + + L GR + I+
Sbjct: 88 KQYNGVPLDGRPMNIQ 103
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-RNRKDVVGVCYAFVEFEDISGVQNAI 1091
++V NLP+ +T + + F+ +G VF+ R+R + F+ E + + A
Sbjct: 24 RLFVGNLPTDITEEDFKRLFERYGEPS--EVFINRDR------GFGFIRLESRTLAEIAK 75
Query: 1092 QA-SPIQLAGRQVYIEERRPNT 1112
L R + I
Sbjct: 76 AELDGTILKSRPLRIRFATHGA 97
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAI 1091
+ V+NL V+ +E+ F FG ++ V V D G FVEF + A+
Sbjct: 99 LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV----DDRGRATGKGFVEFAAKPPARKAL 154
Query: 1092 QA-----SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQ 1129
+ + R V +E + + Y
Sbjct: 155 ERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYH 197
|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV +T + F FG I + + + AFV +E + A+
Sbjct: 18 LYVYGE--DMTPTLLRGAFSPFGNII--DLSMDPPR-----NCAFVTYEKMESADQAVAE 68
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTSRGG 1119
+ Q+ Q+ + R S
Sbjct: 69 LNGTQVESVQLKVNIARKQPMLDSGPS 95
|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 2e-04
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+++V +L V + F++F G + + + Y FV F QNA+
Sbjct: 3 NLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61
Query: 1093 A-SPIQLAGRQVYIEE--RRPN 1111
+ L GR + I + +
Sbjct: 62 SMQGQDLNGRPLRINWAAKLEH 83
|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+ ++NLP + ++ ++ R + +EF + A++
Sbjct: 31 ITMKNLPEGCS----WQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86
Query: 1094 -SPIQLAGRQVYIEERRP 1110
+ I+ G + +E
Sbjct: 87 LNNIEFRGSVITVERDDN 104
|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIK-----PDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+ +YV L V + F FG I D ++R G +AFVEFE
Sbjct: 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR----G--FAFVEFELAED 61
Query: 1087 VQNAIQA-SPIQLAGRQV 1103
AI + +L GR +
Sbjct: 62 AAAAIDNMNESELFGRTI 79
|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Length = 90 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV-------RNRKDVVGVCYAFVEFED 1083
++++YV NL + T+ +++E F FG++ V + + + + FVE ++
Sbjct: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVF--NVKLIYDRETKKPK------GFGFVEMQE 52
Query: 1084 ISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGR 1125
V AI GR + + E P +
Sbjct: 53 -ESVSEAIAKLDNTDFMGRTIRVTEANP------KKSLEHHHH 88
|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-----KDVVGVCYAFVEFEDISG 1086
+VYV NLP ++T ++ F +G++ ++++ K G AF+ F D
Sbjct: 17 STVYVSNLPFSLTNNDLYRIFSKYGKVV-KVTIMKDKDTRKSK---G--VAFILFLDKDS 70
Query: 1087 VQNAIQA-SPIQLAGRQV 1103
QN +A + QL GR +
Sbjct: 71 AQNCTRAINNKQLFGRVI 88
|
| >3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Length = 130 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 1003 VPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG 1062
V ++ + +A G + V + V NL VT + + F FG +
Sbjct: 2 VQSGNLALAASAAAVDAGMAMAG--QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII 59
Query: 1063 VFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS 1094
F +N + A +++ D Q+A +
Sbjct: 60 TFTKNNQ-----FQALLQYADPVSAQHAKLSL 86
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 20/121 (16%)
Query: 368 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 427
G + V + + + + E + + + S LA A
Sbjct: 18 GQNGQAVSYFRQTIALNIDRTEMYY-WTNVDKNSEISSKLATELALAYK----------- 65
Query: 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 487
+N + D A Y+ + + +P ++ + A M+ G +DA +YE+ + +
Sbjct: 66 -------KNRNYDKAYLFYKEL-LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
Query: 488 E 488
E
Sbjct: 118 E 118
|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGVQNA 1090
++V + T +I ++F +G IK + +R+ + G Y VE+E Q A
Sbjct: 25 ILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKG--YTLVEYETYKEAQAA 81
Query: 1091 IQA-SPIQLAGRQVYIEERRP 1110
++ + L G+ + ++
Sbjct: 82 MEGLNGQDLMGQPISVDWCFV 102
|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Length = 77 | Back alignment and structure |
|---|
Score = 39.0 bits (92), Expect = 4e-04
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ L T + E F FG +K + + +R+ + FV F D +GV +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 1094 SPIQLAGRQV 1103
S +L + +
Sbjct: 62 SRHELDSKTI 71
|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGV 1087
E ++V ++ EI+E+F ++G IK + +R+ G YA VE+E
Sbjct: 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKG--YALVEYETHKQA 81
Query: 1088 QNAIQA-SPIQLAGRQVYIEERRP 1110
A +A + ++ G+ + ++
Sbjct: 82 LAAKEALNGAEIMGQTIQVDWCFV 105
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR--KDVVGVCYAFVEFEDISGVQNA 1090
S+ V NL + + F+ +GR+ D R+R K+ G +AFV F D ++A
Sbjct: 72 SLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRG--FAFVRFHDKRDAEDA 128
Query: 1091 IQA-SPIQLAGRQVYIEE---RRPNTGSTS 1116
+ A L GR++ ++ RP S
Sbjct: 129 MDAMDGAVLDGRELRVQMARYGRPPDSHHS 158
|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Length = 75 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 5e-04
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V L +I E F FG ++ + K + F+ F++ V+ ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVE-SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 1094 SPIQLAGRQV 1103
+ +
Sbjct: 61 KYHNVGLSKC 70
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1167 | |||
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 100.0 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 100.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 100.0 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 100.0 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 3q90_A | 140 | RAS GTPase-activating protein-binding protein 1; s | 99.97 | |
| 3ujm_A | 120 | Rasputin; NTF2-like fold, RAS signaling, signaling | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 1gy6_A | 127 | Nuclear transport factor 2; 1.6A {Rattus norvegicu | 99.95 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.95 | |
| 1zo2_A | 129 | NTF2, nuclear transport factor 2; structural genom | 99.95 | |
| 3nv0_B | 154 | NTF2-related export protein; NTF2-like domain, bet | 99.95 | |
| 1gy7_A | 125 | Nuclear transport factor 2; protein transport; 1.6 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2qiy_A | 154 | UBP3-associated protein BRE5; deubiquitylation, ub | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 1jkg_A | 140 | P15; NTF2-like domain, transport protein; 1.90A {H | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.87 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.81 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.7 | |
| 3q2s_C | 229 | Cleavage and polyadenylation specificity factor S; | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.69 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.69 | |
| 1h2v_Z | 156 | 20 kDa nuclear CAP binding protein; CAP-binding-co | 99.68 | |
| 1u6f_A | 139 | Tcubp1, RNA-binding protein UBP1; trypanosome, mRN | 99.68 | |
| 4fxv_A | 99 | ELAV-like protein 1; RNA recognition motif, putati | 99.68 | |
| 1of5_A | 221 | MRNA export factor MEX67; nuclear protein, repeat, | 99.68 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.67 | |
| 1jkg_B | 250 | TAP; NTF2-like domain, transport protein; 1.90A {H | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.67 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 1q40_B | 219 | MEX67, mRNA export factor MEX67; NTF2-fold, nuclea | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.63 | |
| 2dgs_A | 99 | DAZ-associated protein 1; RRM domain, structural g | 99.62 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.62 | |
| 2lxi_A | 91 | RNA-binding protein 10; NMR {Homo sapiens} | 99.62 | |
| 2cqd_A | 116 | RNA-binding region containing protein 1; RNA recog | 99.61 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.61 | |
| 1x5t_A | 96 | Splicing factor 3B subunit 4; structure genomics, | 99.6 | |
| 1whw_A | 99 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.6 | |
| 3s8s_A | 110 | Histone-lysine N-methyltransferase SETD1A; chromat | 99.6 | |
| 3pgw_S | 437 | U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM | 99.6 | |
| 2dnz_A | 95 | Probable RNA-binding protein 23; RNA recognition m | 99.6 | |
| 1x4b_A | 116 | Heterogeneous nuclear ribonucleoproteins A2/B1; st | 99.6 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.59 | |
| 2cpz_A | 115 | CUG triplet repeat RNA-binding protein 1; RRM doma | 99.59 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.59 | |
| 2fy1_A | 116 | RNA-binding motif protein, Y chromosome, family 1 | 99.59 | |
| 2dng_A | 103 | Eukaryotic translation initiation factor 4H; RRM d | 99.59 | |
| 1x5u_A | 105 | Splicing factor 3B subunit 4 (spliceosome associat | 99.59 | |
| 2cq0_A | 103 | Eukaryotic translation initiation factor 3 subunit | 99.59 | |
| 3ex7_B | 126 | RNA-binding protein 8A; protein-RNA complex, mRNA | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 2dh8_A | 105 | DAZ-associated protein 1; RRM domain, structural g | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 2dgo_A | 115 | Cytotoxic granule-associated RNA binding protein 1 | 99.58 | |
| 2cqb_A | 102 | Peptidyl-prolyl CIS-trans isomerase E; RNA recogni | 99.57 | |
| 1wi8_A | 104 | EIF-4B, eukaryotic translation initiation factor 4 | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 2dnm_A | 103 | SRP46 splicing factor; RRM domain, RBD, structural | 99.57 | |
| 2lkz_A | 95 | RNA-binding protein 5; RRM; NMR {Homo sapiens} | 99.57 | |
| 1x5s_A | 102 | Cold-inducible RNA-binding protein; structure geno | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 1x4h_A | 111 | RNA-binding protein 28; structural genomics, RRM d | 99.56 | |
| 2cpe_A | 113 | RNA-binding protein EWS; RNA recognition motif, RR | 99.56 | |
| 3s7r_A | 87 | Heterogeneous nuclear ribonucleoprotein A/B; ferre | 99.56 | |
| 1x4a_A | 109 | Splicing factor, arginine/serine-rich 1 (splicing | 99.56 | |
| 1wez_A | 102 | HnRNP H', FTP-3, heterogeneous nuclear ribonucleop | 99.56 | |
| 2dgp_A | 106 | Bruno-like 4, RNA binding protein; RRM domain, str | 99.55 | |
| 3bs9_A | 87 | Nucleolysin TIA-1 isoform P40; RNA recognition mot | 99.55 | |
| 2cqg_A | 103 | TDP-43, TAR DNA-binding protein-43; RNA recognitio | 99.55 | |
| 2rs2_A | 109 | Musashi-1, RNA-binding protein musashi homolog 1; | 99.55 | |
| 2cph_A | 107 | RNA binding motif protein 19; RNA recognition moti | 99.55 | |
| 2jwn_A | 124 | Embryonic polyadenylate-binding protein 2-B; epabp | 99.55 | |
| 3md1_A | 83 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.55 | |
| 1s79_A | 103 | Lupus LA protein; RRM, alpha/beta, RNA binding pro | 99.55 | |
| 2cq4_A | 114 | RNA binding motif protein 23; RRM domain, structur | 99.55 | |
| 2d9p_A | 103 | Polyadenylate-binding protein 3; RRM domain, struc | 99.55 | |
| 2cpf_A | 98 | RNA binding motif protein 19; RNA recognition moti | 99.55 | |
| 3ucg_A | 89 | Polyadenylate-binding protein 2; ferredoxin-like, | 99.55 | |
| 3mdf_A | 85 | Peptidyl-prolyl CIS-trans isomerase E; RRM domain, | 99.55 | |
| 2khc_A | 118 | Testis-specific RNP-type RNA binding protein; RRM, | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 2jrs_A | 108 | RNA-binding protein 39; RNA binding motif of RBM39 | 99.54 | |
| 2do4_A | 100 | Squamous cell carcinoma antigen recognized by T- c | 99.54 | |
| 2x1f_A | 96 | MRNA 3'-END-processing protein RNA15; transcriptio | 99.54 | |
| 1x4c_A | 108 | Splicing factor, arginine/serine-rich 1; structura | 99.54 | |
| 2dnh_A | 105 | Bruno-like 5, RNA binding protein; RRM domain, RBD | 99.54 | |
| 3n9u_C | 156 | Cleavage and polyadenylation specificity factor S; | 99.54 | |
| 3p5t_L | 90 | Cleavage and polyadenylation specificity factor S; | 99.53 | |
| 2dhg_A | 104 | TRNA selenocysteine associated protein (SECP43); R | 99.53 | |
| 2e5h_A | 94 | Zinc finger CCHC-type and RNA-binding motif- conta | 99.53 | |
| 1p27_B | 106 | RNA-binding protein 8A; nuclear protein, mRNA spli | 99.53 | |
| 2cpy_A | 114 | RNA-binding protein 12; RRM domain, structural gen | 99.53 | |
| 3ns6_A | 100 | Eukaryotic translation initiation factor 3 subuni; | 99.53 | |
| 1oo0_B | 110 | CG8781-PA, drosophila Y14; RNA recognition motif, | 99.52 | |
| 2div_A | 99 | TRNA selenocysteine associated protein; structural | 99.52 | |
| 2cqc_A | 95 | Arginine/serine-rich splicing factor 10; RNA recog | 99.52 | |
| 2cqp_A | 98 | RNA-binding protein 12; RNA recognition motif, RRM | 99.52 | |
| 2m2b_A | 131 | RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio | 99.52 | |
| 2cqi_A | 103 | Nucleolysin TIAR; RNA recognition motif, RRM, RNA | 99.52 | |
| 2la6_A | 99 | RNA-binding protein FUS; structural genomics, nort | 99.52 | |
| 2cq3_A | 103 | RNA-binding protein 9; RRM domain, structural geno | 99.52 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.52 | |
| 1sjq_A | 105 | Polypyrimidine tract-binding protein 1; babbab mot | 99.52 | |
| 2dgu_A | 103 | Heterogeneous nuclear ribonucleoprotein Q; RRM dom | 99.52 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 4f25_A | 115 | Polyadenylate-binding protein 1; RRM fold, transla | 99.51 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 2j76_E | 100 | EIF-4B, EIF4B, eukaryotic translation initiation f | 99.51 | |
| 2mss_A | 75 | Protein (musashi1); RNA-binding domain, RNA bindin | 99.51 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.51 | |
| 1wg5_A | 104 | Heterogeneous nuclear ribonucleoprotein H; structu | 99.5 | |
| 2dgw_A | 91 | Probable RNA-binding protein 19; RRM domain, struc | 99.5 | |
| 2dgv_A | 92 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.5 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 4a8x_A | 88 | RNA-binding protein with serine-rich domain 1; tra | 99.5 | |
| 2kxn_B | 129 | Transformer-2 protein homolog beta; SR protein, RR | 99.5 | |
| 2dnq_A | 90 | RNA-binding protein 4B; RRM domain,RBD, structural | 99.5 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.5 | |
| 2do0_A | 114 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.5 | |
| 2fc8_A | 102 | NCL protein; structure genomics, RRM_1 domain, str | 99.49 | |
| 2ywk_A | 95 | Putative RNA-binding protein 11; RRM-domain, struc | 99.49 | |
| 2lcw_A | 116 | RNA-binding protein FUS; RRM, nucleic acid binding | 99.23 | |
| 2hgn_A | 139 | Heterogeneous nuclear ribonucleoprotein F; RNA rec | 99.49 | |
| 2dgx_A | 96 | KIAA0430 protein; RRM domain, structural genomics, | 99.49 | |
| 1fj7_A | 101 | Nucleolin RBD1, protein C23; RNP, RRM, RNA binding | 99.48 | |
| 2cpx_A | 115 | Hypothetical protein FLJ11016; RRM domain, structu | 99.48 | |
| 2fc9_A | 101 | NCL protein; structure genomics, RRM_1 domain, str | 99.48 | |
| 2wbr_A | 89 | GW182, gawky, LD47780P; DNA-binding protein, RRM, | 99.48 | |
| 1wel_A | 124 | RNA-binding protein 12; structural genomics, NPPSF | 99.48 | |
| 3r27_A | 100 | HnRNP L, heterogeneous nuclear ribonucleoprotein L | 99.48 | |
| 1p1t_A | 104 | Cleavage stimulation factor, 64 kDa subunit; RNA r | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 2kvi_A | 96 | Nuclear polyadenylated RNA-binding protein 3; RNA- | 99.47 | |
| 2dgt_A | 92 | RNA-binding protein 30; RRM domain, structural gen | 99.47 | |
| 3beg_B | 115 | Splicing factor, arginine/serine-rich 1; kinase, S | 99.47 | |
| 2cq1_A | 101 | PTB-like protein L; RRM domain, structural genomic | 99.47 | |
| 2ek1_A | 95 | RNA-binding protein 12; RNA recognition motif, dim | 99.47 | |
| 1rk8_A | 165 | CG8781-PA, CG8781-PA protein; mRNA processing, RRM | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.47 | |
| 2err_A | 109 | Ataxin-2-binding protein 1; protein-RNA complex, R | 99.46 | |
| 1x4d_A | 102 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.46 | |
| 2ad9_A | 119 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.46 | |
| 2dnn_A | 109 | RNA-binding protein 12; RRM domain, RBD, structura | 99.46 | |
| 2dis_A | 109 | Unnamed protein product; structural genomics, RRM | 99.46 | |
| 3ulh_A | 107 | THO complex subunit 4; nuclear protein, RNA bindin | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 1iqt_A | 75 | AUF1, heterogeneous nuclear ribonucleoprotein D0; | 99.46 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 1uaw_A | 77 | Mouse-musashi-1; RNP-type structure, RNA binding p | 99.45 | |
| 2cpi_A | 111 | CCR4-NOT transcription complex subunit 4; RNA reco | 99.45 | |
| 2kn4_A | 158 | Immunoglobulin G-binding protein G, splicing FACT | 99.45 | |
| 2nlw_A | 105 | Eukaryotic translation initiation factor 3 subunit | 99.45 | |
| 2lea_A | 135 | Serine/arginine-rich splicing factor 2; SR protein | 99.45 | |
| 1x4f_A | 112 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.45 | |
| 2db1_A | 118 | Heterogeneous nuclear ribonucleoprotein F; RRM dom | 99.45 | |
| 2cpd_A | 99 | Apobec-1 stimulating protein; RNA recognition moti | 99.45 | |
| 1wex_A | 104 | Hypothetical protein (riken cDNA 2810036L13); stru | 99.45 | |
| 2e5j_A | 97 | Methenyltetrahydrofolate synthetase domain contain | 99.44 | |
| 2hgl_A | 136 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.44 | |
| 2jvr_A | 111 | Nucleolar protein 3; RNA recognition motif, nucleu | 99.44 | |
| 2a3j_A | 127 | U1 small nuclear ribonucleoprotein A; computationa | 99.44 | |
| 2dnp_A | 90 | RNA-binding protein 14; RRM domain, RBD, structura | 99.44 | |
| 2kt5_A | 124 | RNA and export factor-binding protein 2; chaperone | 99.44 | |
| 1fjc_A | 96 | Nucleolin RBD2, protein C23; RNP, RRM, RNA binding | 99.44 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.44 | |
| 1x4e_A | 85 | RNA binding motif, single-stranded interacting pro | 99.44 | |
| 2cqh_A | 93 | IGF-II mRNA-binding protein 2 isoform A; RNA recog | 99.44 | |
| 1x5o_A | 114 | RNA binding motif, single-stranded interacting pro | 99.44 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.43 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 99.43 | |
| 2ki2_A | 90 | SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA | 99.43 | |
| 2xs2_A | 102 | Deleted in azoospermia-like; RNA binding protein-R | 99.43 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 2krb_A | 81 | Eukaryotic translation initiation factor 3 subunit | 99.43 | |
| 1wf1_A | 110 | RNA-binding protein RALY; structural genomics, RRM | 99.43 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.42 | |
| 2lmi_A | 107 | GRSF-1, G-rich sequence factor 1; G-rich RNA seque | 99.42 | |
| 2cpj_A | 99 | Non-POU domain-containing octamer-binding protein; | 99.42 | |
| 2e5g_A | 94 | U6 snRNA-specific terminal uridylyltransferase 1; | 99.42 | |
| 3nv0_A | 205 | Nuclear RNA export factor 2; NTF2-like domain, bet | 99.41 | |
| 2jvo_A | 108 | Nucleolar protein 3; nucleus, phosphorylation, rib | 99.41 | |
| 1x4g_A | 109 | Nucleolysin TIAR; structural genomics, RRM domain, | 99.41 | |
| 2dha_A | 123 | FLJ20171 protein; RRM domain, structural genomics, | 99.41 | |
| 2hvz_A | 101 | Splicing factor, arginine/serine-rich 7; RRM, RNA | 99.41 | |
| 2xnq_A | 97 | Nuclear polyadenylated RNA-binding protein 3; tran | 99.41 | |
| 1nu4_A | 97 | U1A RNA binding domain; RNA recognition motif, U1 | 99.41 | |
| 2la4_A | 101 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 2hgm_A | 126 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.39 | |
| 1x5p_A | 97 | Negative elongation factor E; structure genomics, | 99.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 1why_A | 97 | Hypothetical protein riken cDNA 1810017N16; RNA re | 99.39 | |
| 2j8a_A | 136 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.39 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.38 | |
| 2ytc_A | 85 | PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s | 99.38 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.37 | |
| 3d2w_A | 89 | TAR DNA-binding protein 43; DP-43 proteinopathy, T | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.36 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.36 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.36 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.35 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.35 | |
| 1wf0_A | 88 | TDP-43, TAR DNA-binding protein-43; structural gen | 99.35 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.35 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 3lqv_A | 115 | PRE-mRNA branch site protein P14; cysless mutant, | 99.34 | |
| 1whx_A | 111 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.34 | |
| 3egn_A | 143 | RNA-binding protein 40; RNA recognition motif (RRM | 99.33 | |
| 2cq2_A | 114 | Hypothetical protein LOC91801; RRM domain, structu | 99.33 | |
| 1sjr_A | 164 | Polypyrimidine tract-binding protein 1; extended b | 99.32 | |
| 2e44_A | 96 | Insulin-like growth factor 2 mRNA binding protein | 99.32 | |
| 2i2y_A | 150 | Fusion protein consists of immunoglobin G- binding | 99.32 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.31 | |
| 2f3j_A | 177 | RNA and export factor binding protein 2; RRM domai | 99.31 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.31 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.31 | |
| 2diu_A | 96 | KIAA0430 protein; structural genomics, RRM domain, | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.3 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.3 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.29 | |
| 3zzy_A | 130 | Polypyrimidine tract-binding protein 1; protein bi | 99.29 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.29 | |
| 1wg1_A | 88 | KIAA1579 protein, homolog EXC-7; RBD, structural g | 99.28 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.28 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.28 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.28 | |
| 2dnl_A | 114 | Cytoplasmic polyadenylation element binding protei | 99.27 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.27 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.26 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.26 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.26 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.26 | |
| 2e5i_A | 124 | Heterogeneous nuclear ribonucleoprotein L-like; RR | 99.25 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.25 | |
| 2voo_A | 193 | Lupus LA protein; RNA-binding protein, RNA recogni | 99.24 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.24 | |
| 2hzc_A | 87 | Splicing factor U2AF 65 kDa subunit; RNA splicing, | 99.24 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.24 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.23 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.23 | |
| 2bz2_A | 121 | Negative elongation factor E; NELF E, RNA recognit | 99.23 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.22 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.21 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.21 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.21 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.2 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.2 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.19 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.19 | |
| 2pe8_A | 105 | Splicing factor 45; RRM, protein binding; 2.00A {H | 99.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.18 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.18 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.18 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.18 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.17 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.16 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.16 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.15 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.14 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.13 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.13 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.13 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.13 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.13 | |
| 1q42_A | 201 | MTR2, mRNA transport regulator MTR2; NTF2-fold, nu | 99.13 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.12 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.12 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.12 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.12 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.12 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.1 | |
| 3u1l_A | 240 | PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; | 99.1 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.1 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.09 | |
| 2d9o_A | 100 | DNAJ (HSP40) homolog, subfamily C, member 17; RRM | 99.09 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2dit_A | 112 | HIV TAT specific factor 1 variant; structural geno | 99.07 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.06 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.05 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.03 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.03 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.03 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.02 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 99.02 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.01 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.01 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.0 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.0 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 99.0 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 99.0 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.99 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.99 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 98.99 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.98 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.98 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.95 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.95 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.95 | |
| 3v4m_A | 105 | Splicing factor U2AF 65 kDa subunit; canonical RNA | 98.95 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.94 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.94 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.94 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.93 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 98.93 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.93 | |
| 1jmt_A | 104 | Splicing factor U2AF 35 kDa subunit; RRM, RNA spli | 98.92 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 98.92 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.92 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.92 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.91 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.9 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 98.9 | |
| 3ue2_A | 118 | Poly(U)-binding-splicing factor PUF60; RNA recogni | 98.89 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 98.88 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.88 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.88 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.88 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.87 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.86 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.86 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.85 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.85 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.85 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.84 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.83 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.81 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.81 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.76 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.75 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.75 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.74 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.74 | |
| 3tht_A | 345 | Alkylated DNA repair protein ALKB homolog 8; struc | 98.74 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.72 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.71 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.71 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.7 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.7 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.7 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.7 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.7 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.69 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.66 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 3s6e_A | 114 | RNA-binding protein 39; ferredoxin-like, structura | 98.62 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.61 | |
| 2dnr_A | 91 | Synaptojanin-1; RRM domain, RBD, structural genomi | 98.61 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.59 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.58 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.57 | |
| 1of5_B | 184 | MTR2, YKL186C, mRNA transport regulator MTR2; nucl | 98.55 | |
| 1owx_A | 121 | Lupus LA protein, SS-B, LA; RRM, transcription; NM | 98.53 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.52 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.5 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.49 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.43 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 1ufw_A | 95 | Synaptojanin 2; RNP domain, structural genomics, r | 98.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.24 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.23 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.21 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.09 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.04 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 97.96 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.95 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.91 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.86 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.72 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.69 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.64 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.61 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.58 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.56 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.54 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.52 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 97.51 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 97.45 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.34 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 97.29 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.29 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 97.28 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.25 | |
| 2l9w_A | 117 | U4/U6 snRNA-associated-splicing factor PRP24; RRM, | 97.25 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 97.16 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 97.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.93 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.65 | |
| 2dhx_A | 104 | Poly (ADP-ribose) polymerase family, member 10 var | 96.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.57 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.52 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.64 | |
| 1wwh_A | 119 | Nucleoporin 35, nucleoporin; structural genomics, | 94.94 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.82 | |
| 3p3d_A | 132 | Nucleoporin 53; structural genomics, PSI-2, protei | 94.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.32 | |
| 1whv_A | 100 | Poly(A)-specific ribonuclease; RNA recognition mot | 94.15 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.47 | |
| 3hx8_A | 129 | MLR2180 protein, putative ketosteroid isomerase; s | 93.24 | |
| 1uw4_A | 91 | UPF3X; nonsense mediated mRNA decay protein, RNA-b | 92.98 | |
| 4i4k_A | 143 | Uncharacterized protein SGCJ; structural genomics, | 92.93 | |
| 1wey_A | 104 | Calcipressin 1; structural genomics, RRM domain, r | 92.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 91.85 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.5 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.43 | |
| 3gzr_A | 146 | Uncharacterized protein with A NTF2-like fold; str | 91.39 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.36 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.31 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.24 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.01 | |
| 3ctr_A | 101 | Poly(A)-specific ribonuclease PARN; protein-RNA-co | 90.69 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.6 | |
| 3d9r_A | 135 | Ketosteroid isomerase-like protein; YP_049581.1, s | 90.54 | |
| 3pq1_A | 464 | Poly(A) RNA polymerase; nucleotidyl transferase, R | 90.47 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.7 | |
| 3cu3_A | 172 | Domain of unknown function with A cystatin-like F; | 89.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 89.17 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.93 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.44 | |
| 3gwr_A | 144 | Putative calcium/calmodulin-dependent protein KIN | 87.08 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 86.76 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.38 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.46 | |
| 2l08_A | 97 | Regulator of nonsense transcripts 3A; NESG, nonsen | 84.43 | |
| 3h51_A | 156 | Putative calcium/calmodulin dependent protein KIN | 83.85 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.83 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.95 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.45 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.29 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.55 |
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-50 Score=494.72 Aligned_cols=483 Identities=14% Similarity=0.195 Sum_probs=396.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHH
Q 001064 79 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS---MDKVVEV 155 (1167)
Q Consensus 79 ~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~---~e~A~~l 155 (1167)
....+..|++.|..||.|++.|..|++.+.+ .++++.+|.+|+++|..||.+..+|++|+++|.+.++ +++++++
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~--~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVS--LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 3456789999999999999999999999987 3789999999999999999999999999999999999 9999999
Q ss_pred HHHHHhccC--CCHHHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHH---------
Q 001064 156 YERAVQGVT--YSVDIWLHYCIFAINTYGD-------PETIRRLFERGLAYVGT-DYLSFPLWDKYIEYEY--------- 216 (1167)
Q Consensus 156 ~eraL~~~P--~s~~lw~~ya~~~~~~~~~-------~~~Ar~~feral~~~g~-d~~s~~lw~~y~~~e~--------- 216 (1167)
|+|||..+| .+++||..|++|.....+. .+.+|++|++||..+|. |+.+..||..|+.|+.
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999999995 8999999999999854322 25577999999999999 9999999999999987
Q ss_pred HhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccc
Q 001064 217 MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQ 296 (1167)
Q Consensus 217 ~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~ 296 (1167)
++++++++|.+|+|+|.+|..+++.+|..|..|+.... .. ...
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~--~~-~a~---------------------------------- 248 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN--QL-TAR---------------------------------- 248 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC--TT-THH----------------------------------
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC--cc-hHH----------------------------------
Confidence 35678999999999999999999999999998865311 00 000
Q ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc------------CCCChhhHHHHHHHHHHH
Q 001064 297 TSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV------------KPLSVTELENWHNYLDFI 364 (1167)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v------------~pld~~~~~~W~~y~~~~ 364 (1167)
+.+..+...|..+......+..+.+.|.|.+.+. .+.+..++.+|..|++|+
T Consensus 249 ----------------~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fE 312 (679)
T 4e6h_A 249 ----------------RHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWE 312 (679)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHH
Confidence 0111111122222222222333555666543332 113557789999999998
Q ss_pred HHcC-------ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 365 ERDG-------DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH-NALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 365 e~~g-------~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~-~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
+..+ ..++++.+|++||..||+++++|+.|+.++...|+.++|+ .+|++|+..+ |++..+|+.++.++++.
T Consensus 313 k~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 313 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELN 391 (679)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 7654 2467889999999999999999999999999999999996 9999999877 78999999999999999
Q ss_pred CCHHHHHHHHHHHhhhc----------CCC-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC
Q 001064 437 GDIDGARAAYQLVHTET----------SPG-----------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 495 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~----------~P~-----------~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~ 495 (1167)
|++++|+.+|++++..+ .|. ...+|+.++.++.|.|++++|+.+|.+|++..+.
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~----- 466 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL----- 466 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----
Confidence 99999999999984322 253 4568999999999999999999999999998321
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCH
Q 001064 496 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANA 575 (1167)
Q Consensus 496 ~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~ 575 (1167)
..+.+|+.++.++++..++.+.||++|+++|+.+|++..+|..|+.|+...++ ++.+|.+|++++...++ +
T Consensus 467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~------~ 537 (679)
T 4e6h_A 467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISD------S 537 (679)
T ss_dssp SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSS------T
T ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCC------H
Confidence 12568999999998855569999999999999999999999999999999876 67899999999987643 3
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCC
Q 001064 576 AEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGA 641 (1167)
Q Consensus 576 ~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~ 641 (1167)
+++..+|..|++||..+||++++.+|++|+.+++|+.. + .....+||++.+..+|.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~------~----~~~f~~ry~~~~~~~i~ 593 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN------K----LEEFTNKYKVLDVNYLQ 593 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC------H----HHHHHHHTCBTTBCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc------H----HHHHHHHhcCCcchhHH
Confidence 56789999999999999999999999999999999741 1 23347888888776654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-48 Score=473.78 Aligned_cols=479 Identities=22% Similarity=0.363 Sum_probs=396.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 86 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 86 l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
|+++|+.||.|+++|..|+... + .+++++|+.+|+++|+.+|.+..+|+.|+.++.+.|++++|+++|+|||..+|
T Consensus 2 le~al~~~P~~~~~w~~l~~~~-~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIREA-Q--NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH-H--SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-
T ss_pred hhhHhhhCCCCHHHHHHHHHHH-H--hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Confidence 6789999999999999999963 3 47999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHhhcCCHHHHHH----HHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHHHHHHHHHH
Q 001064 166 SVDIWLHYCIFAINTYGDPETIRR----LFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRIL 232 (1167)
Q Consensus 166 s~~lw~~ya~~~~~~~~~~~~Ar~----~feral~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~A~~iy~r~l 232 (1167)
++++|+.|+.++.+..++++.|++ +|++++..+|.++.+..+|..|+.|+.. ++++++|+.+|+++|
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 799999999998877787776654 9999999999999999999999999987 789999999999999
Q ss_pred hcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001064 233 ENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 312 (1167)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~ 312 (1167)
++|..+...+|..|..|...... .. . .
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-------~~---~-------------------------------------------~ 184 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-------HL---A-------------------------------------------K 184 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-------HH---H-------------------------------------------H
T ss_pred hchhhhHHHHHHHHHHHHHhhch-------hH---H-------------------------------------------H
Confidence 99888888888888776432110 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC----hhhHHHHHHHHHHHHHcC----Ch----HHHHHHHHHH
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS----VTELENWHNYLDFIERDG----DF----NKVVKLYERC 380 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld----~~~~~~W~~y~~~~e~~g----~~----~~a~~~yera 380 (1167)
+++..+...|..+....+.+..+.+++++...++.|.. ..+..+|..|+.|+.... +. .+++.+|++|
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 01100001111111111112223346665544444432 355789999999987642 33 4889999999
Q ss_pred HHhcCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 381 LIACANYPEYWIRYVLCMEA-------SGSMD-------LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 381 l~~~p~~~~~w~~ya~~l~~-------~g~~e-------~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
|..+|+++++|+.|+.++.. .|+++ +|+.+|++|++...|++..+|+.++.++++.|++++|+.+|
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999986 68887 99999999997333899999999999999999999999999
Q ss_pred HHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 447 QLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 447 ~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka 525 (1167)
+++ +++.|++. .+|+.++.++.+.|++++|+.+|++|++..+. ...++...+.+++...|++++|+++|+++
T Consensus 345 ~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 345 NRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHH-HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHH-hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 998 78899875 69999999999999999999999999998653 24466666666665689999999999999
Q ss_pred HhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 001064 526 LDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 605 (1167)
Q Consensus 526 l~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~ 605 (1167)
|+.+|++..+|..|+.|+...++ .+.+|.+|++++...+.+ ++.+..+|..|+.||..+||.+++.++.+|+
T Consensus 418 l~~~p~~~~~~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~~-----~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 418 LKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSLP-----PEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHSCCSC-----GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHhCCC---HhhHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999998876 677999999999976543 3466789999999999999999999999999
Q ss_pred HhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCC
Q 001064 606 ARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPS 643 (1167)
Q Consensus 606 ~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~ 643 (1167)
.+.+|. +.+++ +....+||||+++++||+++
T Consensus 490 ~~~~p~-----~~~~~--~~~~~~~r~~~~~~~~~~~~ 520 (530)
T 2ooe_A 490 FTAFRE-----EYEGK--ETALLVDRYKFMDLYPCSAS 520 (530)
T ss_dssp HHHTHH-----HHTTC--HHHHHGGGTCBTTBCSSCHH
T ss_pred HHHCch-----hccCc--hHHHHHHHHHhcccCCCCHH
Confidence 999984 34444 46778999999999999985
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=378.97 Aligned_cols=429 Identities=14% Similarity=0.126 Sum_probs=325.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
+++.||.+|++++..+|. +++++++.||+|||..+| +++||..|++|........+.++.+|++
T Consensus 10 ~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp --CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred chHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 589999999999999998 789999999999999887 9999999999999544456789999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHH----HhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 194 GLAYVGTDYLSFPLWDKYIEYEY----MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~~e~----~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
|+..+|.|+.++.||..|+.|+. +++++++++.+|+|+|.+|+.+.+.+|..|..|+...... +
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~---~--------- 141 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI---T--------- 141 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHH---H---------
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccc---c---------
Confidence 99999999999999999999976 4678999999999999999999999999998885432100 0
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
..+.+.. ....+..++..|+.+... .
T Consensus 142 -----------------------------------------~~~~~~~------~~~~y~~ar~~y~~~~~~-------~ 167 (493)
T 2uy1_A 142 -----------------------------------------GKKIVGD------TLPIFQSSFQRYQQIQPL-------I 167 (493)
T ss_dssp -----------------------------------------HHHHHHH------HHHHHHHHHHHHHHHHHH-------H
T ss_pred -----------------------------------------HHHHHHH------HhHHHHHHHHHHHHHHHH-------H
Confidence 0001111 112333344444444320 0
Q ss_pred ChhhHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC
Q 001064 350 SVTELENWHNYLDFIERDGD-------FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL 422 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~-------~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~ 422 (1167)
...+..+|..|++|++..+. .+++..+|++||..+|+++++|+.|+.++...|+.+.|+.+|+||+.. |.+
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 11145789999999875321 467899999999999999999999999999999999999999999998 778
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHh-hh-------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVH-TE-------TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 494 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~-~~-------~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~ 494 (1167)
..+|+.++.+++. ++. -..++++.. .+ ..+....+|+.|+.++.+.+++++|+.+|++| . .+.
T Consensus 246 ~~l~~~y~~~~e~-~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---- 316 (493)
T 2uy1_A 246 MFLSLYYGLVMDE-EAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG---- 316 (493)
T ss_dssp SHHHHHHHHHTTC-THH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC----
T ss_pred HHHHHHHHhhcch-hHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC----
Confidence 8999998887431 111 112222210 00 11224478999999999999999999999999 3 332
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCC
Q 001064 495 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTAN 574 (1167)
Q Consensus 495 ~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~ 574 (1167)
....+|+.++.+++...++.+.||.+|+++++..|+++.+|..|++|+...++ .+.+|.+|+++..
T Consensus 317 -~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~---~~~aR~l~er~~k---------- 382 (493)
T 2uy1_A 317 -VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD---EENARALFKRLEK---------- 382 (493)
T ss_dssp -CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHSCC----------
T ss_pred -CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH----------
Confidence 12568999999999855679999999999999999999999999999998876 6679999999832
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC----CCC-chhhhhc-chhhh---hcchHHHhhhcCCCCCC-C
Q 001064 575 AAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP----HRS-TSELRKR-HAEDF---LASERAKMAKSYSGAPS-P 644 (1167)
Q Consensus 575 ~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~----~~~-~~~~~kr-~~~~~---~~~~~~k~~~~~~~~~~-~ 644 (1167)
+..+|..|++||..+||.++++++++|..+.+.. .+. ..+.=.. -...+ ..++||.++++.||+++ .
T Consensus 383 ---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~~~~~ 459 (493)
T 2uy1_A 383 ---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRL 459 (493)
T ss_dssp ---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCCCCTTCC
T ss_pred ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhccccCCccch
Confidence 2579999999999999999999999999887752 111 0000000 01122 35789999999999976 5
Q ss_pred ccccccCC
Q 001064 645 AQSLMGAY 652 (1167)
Q Consensus 645 ~~~~~~~~ 652 (1167)
.+.-+...
T Consensus 460 ~~~~~~~~ 467 (493)
T 2uy1_A 460 LDEFMENL 467 (493)
T ss_dssp CTTTTC--
T ss_pred HHHHHHhc
Confidence 56655543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=327.50 Aligned_cols=416 Identities=16% Similarity=0.246 Sum_probs=319.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHH
Q 001064 76 GSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA-RVGSMDKVVE 154 (1167)
Q Consensus 76 ~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~-~~~~~e~A~~ 154 (1167)
.++++.+...|+++++.+|.+...|..++..+.+. +++++|+.+|+++|..+| +..+|+.|+.+.. ..++++.|++
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA--KNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHH
Confidence 48899999999999999999999999999999874 799999999999999999 6889999998765 5577776655
Q ss_pred ----HHHHHHhc---cCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 001064 155 ----VYERAVQG---VTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ 219 (1167)
Q Consensus 155 ----l~eraL~~---~P~s~~lw~~ya~~~~~--------~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~ 219 (1167)
+|+++|.. +|.+..+|..|+.|+.. ..++++.|+.+|+++|. .|.+ ....+|..|..|+...+
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~-~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMI-NIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCT-THHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhh-hHHHHHHHHHHHHHhhc
Confidence 99999875 45789999999999873 15789999999999998 5543 23589999999986544
Q ss_pred -------------hHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccc
Q 001064 220 -------------EWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANE 286 (1167)
Q Consensus 220 -------------~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e 286 (1167)
++..|+.+|... ..+... +......
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~---------------~~~~~~-------------------l~~~~~~-------- 217 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEY---------------ETVMKG-------------------LDRNAPS-------- 217 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHH---------------HHHHHH-------------------CCSSSCC--------
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHH---------------HHHHHH-------------------hcccccc--------
Confidence 233343333321 111000 0000000
Q ss_pred cccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHH
Q 001064 287 EEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK----EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLD 362 (1167)
Q Consensus 287 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~----~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~ 362 (1167)
.|+ ............|..++..........+ ....++..|+++|. .+|...++|..|+.
T Consensus 218 ---~~p------~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~--------~~p~~~~~w~~~~~ 280 (530)
T 2ooe_A 218 ---VPP------QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL--------VLGHHPDIWYEAAQ 280 (530)
T ss_dssp ---CCC------C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHH
T ss_pred ---CCC------CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH--------hCCCCHHHHHHHHH
Confidence 000 0000000011233333322110000000 11345667999998 67777899999999
Q ss_pred HHHH-------cCChH-------HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh-HHH
Q 001064 363 FIER-------DGDFN-------KVVKLYERCLI-ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-EIH 426 (1167)
Q Consensus 363 ~~e~-------~g~~~-------~a~~~yeral~-~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~-~l~ 426 (1167)
++.+ .|+++ +|+.+|++++. .+|.+..+|+.++.++...|++++|+.+|++++++. |.++ .+|
T Consensus 281 ~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 359 (530)
T 2ooe_A 281 YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHH
T ss_pred HHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHH
Confidence 9886 68887 99999999997 799999999999999999999999999999999976 6664 699
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 505 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~-r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a 505 (1167)
+.++.++.+.|++++|+.+|+++ ++..|....+|+..+.++. ..|++++|+.+|+++++..|+ .+.+|..|+
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~A-l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~------~~~~~~~~~ 432 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKA-REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYI 432 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT------CHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC------CHHHHHHHH
Confidence 99999999999999999999999 6778888888877776653 589999999999999999864 378999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhcCCCH----HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 506 RFLHLVSRNAEKARQILVDSLDHVQLSK----PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 506 ~~~~~~~g~~~~Ar~i~~kal~~~p~~~----~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
.++.. .|++++||.+|+++++..|.++ .+|..|+.||..+|+ .+.+..++.+++...|
T Consensus 433 ~~~~~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~---~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 433 DYLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHTT-TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHTH
T ss_pred HHHHh-CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCc
Confidence 99877 9999999999999999877654 599999999999987 4557788888877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=321.15 Aligned_cols=467 Identities=12% Similarity=0.119 Sum_probs=344.1
Q ss_pred cCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhh---HHHHHHHHHH
Q 001064 48 EAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDN---IVKIRRVYDA 124 (1167)
Q Consensus 48 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~---~~~ar~~ye~ 124 (1167)
.+..+.+....+|.....-+.....+...+.+..+...|+++|...|.....|..++....+. ++ ++.++.+|++
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK--MEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh--CCcchHHHHHHHHHH
Confidence 344566666667766655444444444446788888999999999999999999999998764 67 9999999999
Q ss_pred HHHhCC--CCHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHhc----cCCCHHHHHHHHHHHHh--------hcC
Q 001064 125 FLAEFP--LCYGYWKKYADHEARVGSM--------DKVVEVYERAVQG----VTYSVDIWLHYCIFAIN--------TYG 182 (1167)
Q Consensus 125 ~l~~~P--~~~~~W~~~a~~e~~~~~~--------e~A~~l~eraL~~----~P~s~~lw~~ya~~~~~--------~~~ 182 (1167)
+|...| .+..+|..|+++..+.++. +.++++|++||.. ++.+..+|..|+.|+.. ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 999994 6889999999999887654 5577999999975 56688999999999872 123
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH---HHHHHHHHHHhcCCCcccc
Q 001064 183 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD---RYFSSFKEFAASRPLSELR 259 (1167)
Q Consensus 183 ~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~---~~~~~~~~~~~~~~~~~~~ 259 (1167)
+++.+|.+|+|+|. +|.+- ...+|..|..|+...+... ++++.... ...++ ..+.....+.... ....
T Consensus 209 ~~~~~R~iy~raL~-iP~~~-~~~~w~~Y~~fe~~~~~~~-a~~~~~e~----~~~y~~Ar~~~~e~~~~~~~l--~r~~ 279 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC-QPMDC-LESMWQRYTQWEQDVNQLT-ARRHIGEL----SAQYMNARSLYQDWLNITKGL--KRNL 279 (679)
T ss_dssp HHHHHHHHHHHHTT-SCCSS-HHHHHHHHHHHHHHHCTTT-HHHHHHHH----HHHHHHHHHHHHHHHHHTTTC--CCCC
T ss_pred HHHHHHHHHHHHHh-CccHH-HHHHHHHHHHHHHhcCcch-HHHHHHHh----hHHHHHHHHHHHHHHHHHHhH--hhcc
Confidence 57889999999996 66542 4589999999998753321 22222111 11122 2222333322211 1100
Q ss_pred cHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 001064 260 TAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY---KKAKEFDSKIIGFE 336 (1167)
Q Consensus 260 ~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y---~~~~~~~~a~~~~e 336 (1167)
. ....+... .. .|. ...........|.+|+......- .........+..|+
T Consensus 280 p------------~~~~~~~~--~~-----~p~-------~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 280 P------------ITLNQATE--SN-----LPK-------PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp C------------SSSTTCCT--TT-----SCC-------TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred c------------cccccchh--cc-----CCC-------CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 0 00000000 00 000 00001122456667765532100 00011233456799
Q ss_pred hhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 337 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV-KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~-~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
++|. ..|...++|..|+.|++..|+.++|+ .+|++|+..||....+|+.|+.+++..|+++.|+.+|++++
T Consensus 334 ~aL~--------~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 334 QAAQ--------HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHH--------HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH--------HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9998 55667899999999999999999996 99999999999999999999999999999999999999999
Q ss_pred Hhhh----------c-----------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHcCC
Q 001064 416 HVFV----------K-----------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTET-SPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 416 ~~~~----------p-----------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-~P~~~~~~~~~a~~e~r~g~ 473 (1167)
...+ | ....+|+.++.++.+.|+++.||++|.++ ++. .+....+|+.++.+|.+.++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A-~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC-RRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHhCC
Confidence 8641 2 24569999999999999999999999999 444 44457889999999988765
Q ss_pred -HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC---CCHHHHHHHHHhHhhCCCh
Q 001064 474 -LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ---LSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 474 -~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p---~~~~l~~~~~~~e~~~~~~ 549 (1167)
.++|+.+|+++|+..+. .+.+|..|++|+.. .|+.+.||.+|++|++..| ....+|..|+.||...|+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~------~~~~w~~y~~fe~~-~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFAT------DGEYINKYLDFLIY-VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp CCHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHH-HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 89999999999999864 37799999999887 8999999999999999988 4679999999999999984
Q ss_pred hHHHHHHHHHHHHhhcCCCCC
Q 001064 550 KQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 550 ~~~~~ar~l~eral~~~~~~~ 570 (1167)
+.++++++|++...|+++
T Consensus 558 ---~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 558 ---NSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp ---HHHHHHHHHHHHHSTTCC
T ss_pred ---HHHHHHHHHHHHhCCCCc
Confidence 458999999999988765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-30 Score=301.26 Aligned_cols=376 Identities=14% Similarity=0.162 Sum_probs=339.9
Q ss_pred ccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001064 74 VDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 74 ~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
...|++++++..++++++.+|++..+|..++..+... +++++|...++++++.+|.+...|..++.++.+.|++++|+
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3348999999999999999999999999999998874 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
.+|++++...|.+.+.|..++..+. ..|++++|+..|++++...|. ...+|..++.+....|++++|..+|++++.
T Consensus 88 ~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 88 EHYRHALRLKPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999988 689999999999999996554 578899999999999999999999999998
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
..+.+...++..
T Consensus 164 ~~p~~~~~~~~l-------------------------------------------------------------------- 175 (388)
T 1w3b_A 164 TQPNFAVAWSNL-------------------------------------------------------------------- 175 (388)
T ss_dssp HCTTCHHHHHHH--------------------------------------------------------------------
T ss_pred hCCCCHHHHHHH--------------------------------------------------------------------
Confidence 766654433321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
..+|...+++++|+..|+++++ ++|.....|..++..+...|++++|+..|++++...|.+..+|..
T Consensus 176 -----~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 176 -----GCVFNAQGEIWLAIHHFEKAVT--------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp -----HHHHHTTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 2245556677888888999998 778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
++.++...|++++|+..|++++++. |+++.+|..++.++.+.|++++|+.+|+++ +++.|++..+|..++.++.+.|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCcccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 889999999999999999999999999998 78899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 474 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
+++|+.+|+++++..|+ .+.++..++..+.. .|++++|+.+|+++++..|++...|..+......
T Consensus 321 ~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 321 IEEAVRLYRKALEVFPE------FAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHHHTTSCTT------CHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 99999999999998753 36788899988776 9999999999999999999999888766655433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-28 Score=281.59 Aligned_cols=369 Identities=12% Similarity=0.067 Sum_probs=329.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC
Q 001064 103 LLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG 182 (1167)
Q Consensus 103 L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~ 182 (1167)
++..+.+ .|++++|+..|++++...|++..+|..++.++...+++++|+..+++++...|.+...|...+..+. ..|
T Consensus 5 ~a~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g 81 (388)
T 1w3b_A 5 LAHREYQ--AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERG 81 (388)
T ss_dssp HHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCC
Confidence 3444444 4899999999999999999999999999999999999999999999999999999999999999998 689
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHH
Q 001064 183 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 262 (1167)
Q Consensus 183 ~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 262 (1167)
++++|+..|++++...|. ....|..++......|+++.|...|+++++..|.+...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------- 139 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS------------------- 139 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH-------------------
T ss_pred CHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-------------------
Confidence 999999999999996554 4678999999999999999999999999887665433222
Q ss_pred HHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001064 263 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 342 (1167)
Q Consensus 263 e~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~ 342 (1167)
.+..++...+++++|+..|+++++
T Consensus 140 ------------------------------------------------------~l~~~~~~~g~~~~A~~~~~~al~-- 163 (388)
T 1w3b_A 140 ------------------------------------------------------DLGNLLKALGRLEEAKACYLKAIE-- 163 (388)
T ss_dssp ------------------------------------------------------HHHHHHHTTSCHHHHHHHHHHHHH--
T ss_pred ------------------------------------------------------HHHHHHHHccCHHHHHHHHHHHHH--
Confidence 112345566778888889999998
Q ss_pred CcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC
Q 001064 343 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL 422 (1167)
Q Consensus 343 ~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~ 422 (1167)
++|.....|..++..+...|++++|+..|++++...|.+.++|..++.++...|++++|...|++++.+. |++
T Consensus 164 ------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 164 ------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp ------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred ------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 6778889999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
+.+|..++.++...|++++|+..|+++ +++.|++..+|..++.++.+.|++++|+.+|+++++..|. .+.+|.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 309 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLN 309 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHH
Confidence 999999999999999999999999998 7889999999999999999999999999999999999864 367888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.++.++.. .|++++|..+|+++++..|++...+..++......+. .+.+..+|++++...|+..
T Consensus 310 ~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 310 NLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCH
Confidence 89988766 9999999999999999999999999988888887776 5668999999998776543
|
| >3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=257.20 Aligned_cols=123 Identities=38% Similarity=0.671 Sum_probs=106.8
Q ss_pred CcchhHhHHHHHHHHhhhcCcccccccccCCceEEEE----cCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccC
Q 001064 717 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRV----DGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSW 790 (1167)
Q Consensus 717 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~----~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~ 790 (1167)
.|.+||+.||++||++|+++|+.|++||+++|++++. +|+......|.++|+++|++||+++ ++|.++||||++
T Consensus 8 ~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qps~ 87 (140)
T 3q90_A 8 SPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATL 87 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEECG
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEEeC
Confidence 4688999999999999999999999999998777653 4544456678899999999999965 579999999999
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEeeeC---CeEEEEcceEEeccCCC
Q 001064 791 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFLDEEP 840 (1167)
Q Consensus 791 ~~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nd~fr~~~~~~ 840 (1167)
++||||+|+|.|+.++. ++++|+|||+|+|++ ++|||+||||||+|+.+
T Consensus 88 ~~gilI~V~G~l~~~~~-~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 88 NDGVVVQVMGLLSNNNQ-ALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp GGCEEEEEEEEEECTTC-CCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred CCCEEEEEEEEEecCCC-CccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 99999999999999885 899999999999996 89999999999999875
|
| >3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-30 Score=248.35 Aligned_cols=116 Identities=35% Similarity=0.612 Sum_probs=104.9
Q ss_pred CcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccCCCce
Q 001064 717 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGV 794 (1167)
Q Consensus 717 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~~~~i 794 (1167)
.|.+||+.||++||++|+++|+.|++||+++|+++|++|+.+. |.++|+++|++|||++ ++|+++||||++++||
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~~~~---G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~gi 78 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVV---GQREIHNRIQQLNFNDCHAKISQVDAQATLGNGV 78 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCCCEE---SHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGGEE
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCcEec---CHHHHHHHHHcCCCcceEEEEecccceEcCCCCE
Confidence 5789999999999999999999999999999999998777655 5567899999999885 4799999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeC-CeEEEEcceEEec
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 836 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nd~fr~~ 836 (1167)
||+|+|.|+.++. +.++|+|||+|+|++ ++|||+||||||+
T Consensus 79 li~V~G~l~~~~~-~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 79 VVQVTGELSNDGQ-PMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEESTTC-CCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCC-CCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 9999999999886 789999999999996 8999999999995
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=304.71 Aligned_cols=441 Identities=8% Similarity=-0.003 Sum_probs=358.7
Q ss_pred CcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 001064 68 AAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 147 (1167)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~ 147 (1167)
.....+.+.+++++++..|++++..+|+ ...|+.++..+... +++++|+.+|++++.. |.+...|..++..+.+.|
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCT--GDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHc--CcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHh
Confidence 3444455559999999999999999995 47889999999874 7999999999998765 778899999999999999
Q ss_pred CHHHHHHHHHHHHhcc----------------CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 001064 148 SMDKVVEVYERAVQGV----------------TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKY 211 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~----------------P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y 211 (1167)
++++|+++|++..... +.++..|...+..+. ..|++++|+.+|++++...+.+ ...|..+
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 240 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT-NLSNFDRAKECYKEALMVDAKC---YEAFDQL 240 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCchh---hHHHHHH
Confidence 9999999999743322 224899999999998 7899999999999999965543 3444333
Q ss_pred --------------------------------------HHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC
Q 001064 212 --------------------------------------IEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 253 (1167)
Q Consensus 212 --------------------------------------~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~ 253 (1167)
+......+++++|+.+|+++++.+ .+...++.....+....
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-KSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG-GCHHHHHHHHHHHHHTT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhc
Confidence 444556789999999999999884 45555555555443332
Q ss_pred CCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 254 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 333 (1167)
Q Consensus 254 ~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~ 333 (1167)
. .+++......+... .|+... .+......|...+++++++.
T Consensus 320 ~------~~~A~~~~~~~~~~---------------~~~~~~------------------~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 320 R------FIDVLAITTKILEI---------------DPYNLD------------------VYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp C------HHHHHHHHHHHHHH---------------CTTCCT------------------THHHHHHHHHHHTCHHHHHH
T ss_pred C------HHHHHHHHHHHHHc---------------CcccHH------------------HHHHHHHHHHHhCCHHHHHH
Confidence 2 23322211111110 010000 22233456778899999999
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
.|+++++ .++.+...|..++..+.+.|++++|+.+|++++...|.+...|..++..+...|++++|+.+|++
T Consensus 361 ~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 361 ISNDLVD--------RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHH--------HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHh--------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999987 56777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 493 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~ 493 (1167)
++... |++..+|..++.++...|++++|+.+|+++ +++.|++..+|..++.++.+.|++++|+.+|+++++..+....
T Consensus 433 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS-YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 99987 788999999999999999999999999998 7889999999999999999999999999999999998653221
Q ss_pred cCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 494 SQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 494 ~~~-~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.+. ...+|..++..+.. .|++++|+++|+++++..|++...|..++......++ .+.+..+|++++...|++.
T Consensus 511 ~p~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRK-LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI---PGLAITHLHESLAISPNEI 584 (597)
T ss_dssp CSGGGHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred chhhHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCh
Confidence 233 26789999999877 9999999999999999999999999999998888877 6678999999999887764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-27 Score=289.94 Aligned_cols=454 Identities=10% Similarity=-0.005 Sum_probs=369.4
Q ss_pred HhCC-CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHH
Q 001064 91 KANS-SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI 169 (1167)
Q Consensus 91 ~~nP-~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~l 169 (1167)
...| .+...|..++..+.+ .+++++|+.+|++++...|++ ..|..++..+.+.|++++|+.+|++++.. |.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 152 (597)
T 2xpi_A 77 NTDSLSREDYLRLWRHDALM--QQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSAC 152 (597)
T ss_dssp -----CHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHH--ccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhH
Confidence 3344 578899999999887 489999999999999999965 77899999999999999999999999875 788999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhc-------------CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001064 170 WLHYCIFAINTYGDPETIRRLFERGLAYV-------------GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 236 (1167)
Q Consensus 170 w~~ya~~~~~~~~~~~~Ar~~feral~~~-------------g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~ 236 (1167)
|..++..+. ..|++++|+.+|++.+... ........+|...+......|++++|+.+|+++++..+
T Consensus 153 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 153 RYLAAFCLV-KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHH-HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999999 7899999999999744321 00022468899999999999999999999999999876
Q ss_pred hhHHHHHHHHHH-------------------------------HHh-cCCCcccccHHHHHHHHHHhhhCCCccchhhhc
Q 001064 237 QQLDRYFSSFKE-------------------------------FAA-SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKA 284 (1167)
Q Consensus 237 ~~~~~~~~~~~~-------------------------------~~~-~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~ 284 (1167)
.+...+...... +.. ...+......+++.. ++....+.
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~----~~~~~~~~------ 301 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED----YLSSINGL------ 301 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH----HHHTSTTG------
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH----HHHHhhcC------
Confidence 655443322100 000 111111111222221 12111110
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHH
Q 001064 285 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 364 (1167)
Q Consensus 285 ~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~ 364 (1167)
..+.. .+..+...|...+++++|+..|+++++ .++.+...|..++..+
T Consensus 302 --------------------~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 302 --------------------EKSSD----LLLCKADTLFVRSRFIDVLAITTKILE--------IDPYNLDVYPLHLASL 349 (597)
T ss_dssp --------------------GGCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCCTTHHHHHHHH
T ss_pred --------------------CchHH----HHHHHHHHHHHhcCHHHHHHHHHHHHH--------cCcccHHHHHHHHHHH
Confidence 01111 223345678899999999999999997 5666778899999999
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
.+.|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++++. |++...|..++.++.+.|++++|+.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999977 7889999999999999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 524 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~k 524 (1167)
+|+++ +++.|++..+|..++.++.+.|++++|+.+|+++++..|. .+.+|..++.++.+ .|++++|.++|++
T Consensus 429 ~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 429 AYTTA-ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFN-KSDMQTAINHFQN 500 (597)
T ss_dssp HHHHH-HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHH-HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 99998 7889999999999999999999999999999999998754 36789999999776 9999999999999
Q ss_pred HHhh------cCCC-HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHH
Q 001064 525 SLDH------VQLS-KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQL 597 (1167)
Q Consensus 525 al~~------~p~~-~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~ 597 (1167)
+++. .|++ ..+|..++......++ .+.+..+|++++...+++. .+|..........|+.+.
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKM---YDAAIDALNQGLLLSTNDA---------NVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSCCH---------HHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHhCCHHH
Confidence 9998 5554 6788888888888776 6778999999998876554 588899999999999999
Q ss_pred HHHHHHHHHhhhCCC
Q 001064 598 IKKAEDRHARLFLPH 612 (1167)
Q Consensus 598 ~~~v~~r~~~~~~~~ 612 (1167)
+.+++++..++.|..
T Consensus 569 A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 569 AITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999998864
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=290.70 Aligned_cols=406 Identities=14% Similarity=0.133 Sum_probs=297.4
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVY 156 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~ 156 (1167)
.+..+...|++++...|. +++++++.+|+++|...| +.++|+.|+.++.+.++ .+.++.+|
T Consensus 10 ~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp --CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH
T ss_pred chHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 478888888899988887 368899999999999999 88999999999998874 57789999
Q ss_pred HHHHhc---cCCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh-----------
Q 001064 157 ERAVQG---VTYSVDIWLHYCIFAIN---TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ----------- 219 (1167)
Q Consensus 157 eraL~~---~P~s~~lw~~ya~~~~~---~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~----------- 219 (1167)
+++|.. ++.+.++|..|++|+.+ ..++.+.+|.+|+|||. +|..- -..+|..|..|+...+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGS-LSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTT-HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-Chhhh-HHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999985 57899999999999762 23568899999999998 56542 3689999999997643
Q ss_pred --hHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCcccccc
Q 001064 220 --EWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQT 297 (1167)
Q Consensus 220 --~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~ 297 (1167)
.+..|+.+|+.+...-...-..+|..|..++.+++.. +
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~-------------------------------------~--- 189 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK-------------------------------------L--- 189 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC-------------------------------------C---
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc-------------------------------------C---
Confidence 2334455555444321110012344444442221100 0
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHH
Q 001064 298 SKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 377 (1167)
Q Consensus 298 ~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~y 377 (1167)
. ...........|+++|. ..|....+|..|+.|+.+.|+.++|+.+|
T Consensus 190 --------~-----------------~~~~~~Rv~~~ye~al~--------~~p~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 190 --------G-----------------GRPHESRMHFIHNYILD--------SFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp --------C-----------------HHHHHHHHHHHHHHHHH--------HTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------c-----------------chhhHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 00001223446888887 33455789999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--H------hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 378 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT--H------VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 378 eral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~--~------~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
+||+.. |....+|+.|+.+++. +. ....++++.+ . ...+....+|+.++.++.+.++++.||.+|+++
T Consensus 237 erAi~~-P~~~~l~~~y~~~~e~-~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 237 ERGIEM-SDGMFLSLYYGLVMDE-EA--VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHHHH-CCSSHHHHHHHHHTTC-TH--HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHhhcch-hH--HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 999999 9999999999886421 11 1112222110 0 011234589999999999999999999999998
Q ss_pred hhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 450 HTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 450 ~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
. ..+....+|+.++.++.+.+ +.++|+.+|+++++..++ .+.+|..|++++.. .|+.++||.+|+++.
T Consensus 313 -~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~------~~~~~~~yid~e~~-~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 313 -G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD------STLLKEEFFLFLLR-IGDEENARALFKRLE-- 381 (493)
T ss_dssp -T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-HTCHHHHHHHHHHSC--
T ss_pred -h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH--
Confidence 3 23346789999999999887 599999999999998753 26789999999876 999999999999983
Q ss_pred cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcC----CCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001064 529 VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN----SDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDR 604 (1167)
Q Consensus 529 ~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~----~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r 604 (1167)
.+..+|..|+.||...|+ .+.+|+++++++... .+.+. .+.+.|++||..+|+++++..-+..
T Consensus 382 --k~~~lw~~~~~fE~~~G~---~~~~r~v~~~~~~~~~~~~~~~~~--------~~~~~~~~fe~~~g~l~~~~~~~~~ 448 (493)
T 2uy1_A 382 --KTSRMWDSMIEYEFMVGS---MELFRELVDQKMDAIKADAILPPL--------PPREHNVQMEGILGRYHCFLDSFNF 448 (493)
T ss_dssp --CBHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHTTCCBCCC--------CCC--CCCCCHHHHHHHHHHHHHCB
T ss_pred --HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhcccccCCcc--------cccccHHHHHHHhhhHHHHHHHhhh
Confidence 578999999999999987 556788888886532 23333 3779999999999998888766543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-26 Score=278.92 Aligned_cols=414 Identities=10% Similarity=0.022 Sum_probs=319.3
Q ss_pred cccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 001064 69 AGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 69 ~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~ 148 (1167)
.+..+...|++++|+..|+++++.+|.+..+|+.++..+..+ +++++|+..|+++++.+|++..+|..++.++...|+
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST--GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 344455558999999999999999999999999999999874 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC----CH-------------------
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL----SF------------------- 205 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~----s~------------------- 205 (1167)
+++|+..|+ ++...|.....|+.. +. ..+....+...|++++...+.... +.
T Consensus 109 ~~~A~~~~~-~~~~~~~~~~~~~~~---~~-~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLS-VLSLNGDFDGASIEP---ML-ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHH-HHC-----------C---HH-HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHH-HHhcCCCCChHHHHH---HH-HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 999999995 888887766665432 11 123346788888888764321110 00
Q ss_pred -----------HHHHHHH--------HHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Q 001064 206 -----------PLWDKYI--------EYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDA 266 (1167)
Q Consensus 206 -----------~lw~~y~--------~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~ 266 (1167)
.++..+. .++...+.+++|..+|+++++..+.+.+.+.....
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~------------------- 244 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL------------------- 244 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH-------------------
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH-------------------
Confidence 1222222 22233356777777777777765554433321111
Q ss_pred HHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 001064 267 AAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV 346 (1167)
Q Consensus 267 ~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v 346 (1167)
.+..+..++...+++++|+..|+++++
T Consensus 245 -----------------------------------------------~~~~~g~~~~~~~~~~~A~~~~~~~~~------ 271 (537)
T 3fp2_A 245 -----------------------------------------------ALCYTGIFHFLKNNLLDAQVLLQESIN------ 271 (537)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred -----------------------------------------------HHHHHHHHHHhcccHHHHHHHHHHHHh------
Confidence 122234567778899999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH
Q 001064 347 KPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 426 (1167)
Q Consensus 347 ~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~ 426 (1167)
++|. ...|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+..|++++... |++..+|
T Consensus 272 --~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 347 (537)
T 3fp2_A 272 --LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPY 347 (537)
T ss_dssp --HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHH
T ss_pred --cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5666 78899999999999999999999999999999999999999999999999999999999999987 7889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
..++.++...|++++|+.+|+++ +++.|++..+|..++.++...|++++|+.+|++++...|...........+...+.
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNET-KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 99999999999999999999998 78899999999999999999999999999999999998754332222223455566
Q ss_pred HHHHHh----------CCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 507 FLHLVS----------RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 507 ~~~~~~----------g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
++.. . |++++|+.+|+++++..|++..+|..++.+....++ .+.+..+|++++...++..
T Consensus 427 ~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 427 ILAR-QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK---IDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHH-HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--CH
T ss_pred HHHH-HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCcH
Confidence 6555 6 999999999999999999999999999998888876 6678999999999877654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-25 Score=264.21 Aligned_cols=348 Identities=11% Similarity=0.059 Sum_probs=279.8
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA 159 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era 159 (1167)
......+.+++..+|.+.+.|+.++..+.. .+++++|+.+|++++..+|.+..+|..++..+...|++++|+.+|+++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLA--AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566778888899999999999988887 478999999999999999999999999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhH
Q 001064 160 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQL 239 (1167)
Q Consensus 160 L~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~ 239 (1167)
+...|.+...|..++..+. ..|++++|+.+|++++...+.+......|..++.......
T Consensus 87 l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------- 145 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------- 145 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH--------------------
Confidence 9999999999999988888 6788999999999988854432100033333333211100
Q ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHH
Q 001064 240 DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVRE 319 (1167)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~ 319 (1167)
++ ...
T Consensus 146 --~~-------------------------------------------------------------------------~~a 150 (450)
T 2y4t_A 146 --LR-------------------------------------------------------------------------SQA 150 (450)
T ss_dssp --HH-------------------------------------------------------------------------HHH
T ss_pred --HH-------------------------------------------------------------------------HHH
Confidence 00 012
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 399 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~ 399 (1167)
..|...+++++|+..|+++++ ++|.....|..++..+...|++++|+.+|++++..+|.+..+|..++.++.
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILE--------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 234556778888888999987 667778899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhcCCChH----HHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFA------------ARFKEQNGDIDGARAAYQLVHTETSPGLL----EAIIK 463 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~------------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~----~~~~~ 463 (1167)
..|++++|+..|++++.+. |+...++..+ +..+...|++++|+.+|+++ +++.|++. .+|..
T Consensus 223 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV-MKTEPSIAEYTVRSKER 300 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCSSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCcchHHHHHHHHH
Confidence 9999999999999999987 7788877766 88899999999999999998 67899874 47888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
++.++.+.|++++|+.+|++++...|+ .+.+|..++.++.. .|++++|+.+|+++++..|++..++..+..+
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQMEPD------NVNALKDRAEAYLI-EEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 899999999999999999999998764 36789999999776 9999999999999999999999888777644
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=274.20 Aligned_cols=406 Identities=10% Similarity=0.026 Sum_probs=223.9
Q ss_pred ccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDK 151 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~ 151 (1167)
.+...|++++|+..|+++++.+| |..+|+.++..+..+ +++++|+..|+++++.+|++..+|..++.++.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 34445899999999999999999 799999999998874 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH---HH-------------------------------HHHh
Q 001064 152 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF---ER-------------------------------GLAY 197 (1167)
Q Consensus 152 A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f---er-------------------------------al~~ 197 (1167)
|+..|++++...|.+......++..... ......+...+ ++ .+..
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLN-KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHH-HHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 9999999999887553333332222220 00000000000 00 0000
Q ss_pred cCCC--------CCCHHHHHHHHHHHHH---hhhHHHHHHHHHHHHh-----c--c-------hhhHHHHHHHHHHHHhc
Q 001064 198 VGTD--------YLSFPLWDKYIEYEYM---QQEWSRVAMIYTRILE-----N--P-------IQQLDRYFSSFKEFAAS 252 (1167)
Q Consensus 198 ~g~d--------~~s~~lw~~y~~~e~~---~~~~~~A~~iy~r~l~-----~--p-------~~~~~~~~~~~~~~~~~ 252 (1167)
.... +.....|...+..... .++++.|+.+|+++++ + . +.+...++.....+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 0000 0113444444443333 5566666666666665 3 1 11122222111111110
Q ss_pred CCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 253 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 332 (1167)
Q Consensus 253 ~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~ 332 (1167)
.. .+++.......... .| . ......+..+|...+++++|+
T Consensus 251 ~~------~~~A~~~~~~~l~~---------------~~--------------~-----~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 251 ND------PLGAHEDIKKAIEL---------------FP--------------R-----VNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp SC------HHHHHHHHHHHHHH---------------CC--------------C-----HHHHHHHHHHHHTSSCCTTGG
T ss_pred CC------HHHHHHHHHHHHhh---------------Cc--------------c-----HHHHHHHHHHHHHCCCHHHHH
Confidence 00 00000000000000 00 0 001111122334444445555
Q ss_pred HHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001064 333 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALA 412 (1167)
Q Consensus 333 ~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~ 412 (1167)
..|+++++ +++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+.+|+
T Consensus 291 ~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 291 NYFDKALK--------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp GHHHHHHT--------TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHHHhh--------cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555 4444455566666655566666666666666666666666666666665555666666666666
Q ss_pred HHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH------HHHHHHHHHHH---cCCHHHHHHHHHH
Q 001064 413 RATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE------AIIKHANMERR---LGNLEDAFSLYEQ 483 (1167)
Q Consensus 413 rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~------~~~~~a~~e~r---~g~~e~A~~~~~k 483 (1167)
+++... |.++.+|..++.++...|++++|+..|+++ +++.|++.. +|+.++.++.. .|++++|+.+|++
T Consensus 363 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 363 EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA-IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 666554 455556666666666666666666666665 444554432 55556666655 5666666666666
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHH
Q 001064 484 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 538 (1167)
Q Consensus 484 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~ 538 (1167)
++...|. .+.++..++.++.. .|++++|+.+|+++++..|++...+..
T Consensus 441 a~~~~~~------~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 441 ASKLDPR------SEQAKIGLAQMKLQ-QEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp HHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHhCcc------cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 6665532 14455555555444 566666666666666666665555543
|
| >1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-28 Score=233.05 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=106.7
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccCCCceE
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVL 795 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~~~~i~ 795 (1167)
+.+||+.||++||++|+++|+.|++||+++| +++|+|+.+. |.++|.++|.+||+++ ++|+++||||+.++||+
T Consensus 7 ~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S-~ls~~g~~~~---G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~~~il 82 (127)
T 1gy6_A 7 WEQIGSSFIQHYYQLFDNDRTQLGAIYIDAS-CLTWEGQQFQ---GKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEE-EEEETTEEEE---SHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhhCCCc-EEEECCcccc---CHHHHHHHHHhCCCcceEEEEEEEEEEEeCCCcEE
Confidence 6789999999999999999999999999986 4457887554 5677899999999964 57999999999999999
Q ss_pred EEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEeccCCC
Q 001064 796 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEP 840 (1167)
Q Consensus 796 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~~~ 840 (1167)
|+|+|.++.++. ++++|+|||+|+|++++|||+||||||++.++
T Consensus 83 i~V~G~~~~~~~-~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 83 SMVVGQLKADED-PIMGFHQMFLLKNINDAWVCTNDMFRLALHNF 126 (127)
T ss_dssp EEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred EEEEEEEEECCC-CcceEeEEEEEEEeCCEEEEEEEEEEEEcccc
Confidence 999999999875 89999999999999999999999999999754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=261.33 Aligned_cols=274 Identities=20% Similarity=0.287 Sum_probs=237.1
Q ss_pred CCChhhHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------cCCH-------H
Q 001064 348 PLSVTELENWHNYLDFIERD----GDF----NKVVKLYERCLIACANYPEYWIRYVLCMEA-------SGSM-------D 405 (1167)
Q Consensus 348 pld~~~~~~W~~y~~~~e~~----g~~----~~a~~~yeral~~~p~~~~~w~~ya~~l~~-------~g~~-------e 405 (1167)
|.++.+..+|..|++|+++. ++. ++|+.+|++|+..+|.++++|+.|+.++.. .|++ +
T Consensus 2 ~~~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 81 (308)
T 2ond_A 2 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchH
Confidence 35667889999999998765 243 689999999999999999999999998864 4886 8
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE-AIIKHANMERRLGNLEDAFSLYEQA 484 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~-~~~~~a~~e~r~g~~e~A~~~~~kA 484 (1167)
+|+.+|++|+....|++..+|+.++.++...|++++|+.+|+++ +++.|++.. +|+.++.++.+.|++++|+.+|++|
T Consensus 82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999534899999999999999999999999999998 789999887 9999999999999999999999999
Q ss_pred HHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 485 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 485 l~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
++..|.. ..+|..++.+++...|++++|+++|+++++.+|++..+|..++.++...++ .+.++.+|++++.
T Consensus 161 ~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~ 231 (308)
T 2ond_A 161 REDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLT 231 (308)
T ss_dssp HTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred HhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHh
Confidence 9987642 457888888866557999999999999999999999999999999999887 6779999999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCC
Q 001064 565 SNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPS 643 (1167)
Q Consensus 565 ~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~ 643 (1167)
... +++++...+|..|+.|+..+|+.+.+.++++|+.+.+|.... .. ......||++++++.||++.
T Consensus 232 ~~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~-----~~--~~~~~~~r~~~l~~~P~~~~ 298 (308)
T 2ond_A 232 SGS-----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE-----GK--ETALLVDRYKFMDLYPCSAS 298 (308)
T ss_dssp SSS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS-----SC--HHHHHHTTTCBTTBCSSCHH
T ss_pred ccC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc-----cc--hHHHHHHHHHhcccCCCCHH
Confidence 632 223345689999999999999999999999999999997421 11 22566899999999998763
|
| >1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=232.64 Aligned_cols=116 Identities=29% Similarity=0.461 Sum_probs=104.4
Q ss_pred CcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccCCCce
Q 001064 717 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGV 794 (1167)
Q Consensus 717 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~~~~i 794 (1167)
.+.+||+.||++||++|+++|+.|++||+++|. +.|+|+.+. |.++|.++|.+||+++ ++|+++||||+.+|||
T Consensus 10 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~-ls~~g~~~~---G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~gi 85 (129)
T 1zo2_A 10 QFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSM-LTWEDTQFQ---GQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGS 85 (129)
T ss_dssp THHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEE-EEETTEEEE---SHHHHHHHHHHHCCSCEEEEEEEEEEEECTBSSE
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcE-EEECCceec---cHHHHHHHHHhCCCcceEEEEEEEEEEEeCCCcE
Confidence 378899999999999999999999999999864 457887554 5677899999999976 6799999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeC-CeEEEEcceEEecc
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFLD 837 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nd~fr~~~ 837 (1167)
+|+|+|.++.++. ++++|+|||+|+|++ ++|||+||||||++
T Consensus 86 lI~V~G~~~~~~~-~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~ 128 (129)
T 1zo2_A 86 IVFVTGDVRIDDG-QPLKFSQVFNLMPSGNGGFMIFNDLFRLNL 128 (129)
T ss_dssp EEEEEEEEEETTC-CCEEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred EEEEEEEEEECCC-CcceEEEEEEEEEcCCCcEEEEeEEEEEec
Confidence 9999999999886 899999999999998 89999999999986
|
| >3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-28 Score=237.54 Aligned_cols=115 Identities=23% Similarity=0.421 Sum_probs=104.9
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccC-------
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW------- 790 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~------- 790 (1167)
+.+||+.||++||++|+++|+.|++||.++|.| .|+|+.+ .|.++|.++|++||+++++|.++|||++.
T Consensus 33 a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~l-s~~g~~~---~G~~~I~~~l~~Lp~~~h~I~s~D~qp~~~~~~~q~ 108 (154)
T 3nv0_B 33 LCNESKKFMDVYYDVMDRKREKIGFLYTQVSNA-VWNGNPI---NGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDM 108 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEE-EETTEEE---ESHHHHHHHHHHSCCEEEEEEEEEEEECCTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEE-EECCeec---ccHHHHHHHHHhCCCeEEEEEEEEEEEcCccccCCC
Confidence 457999999999999999999999999998655 5898765 45667899999999988999999999998
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEecc
Q 001064 791 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 837 (1167)
Q Consensus 791 ~~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 837 (1167)
++||||+|+|.|+.++. ++++|+|||+|+|++++|||+||||||+|
T Consensus 109 ~~~ilI~V~G~l~~~~~-~~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 109 SGGMLLNVAGAVTVDGD-SKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp TTCEEEEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred CCeEEEEEEEEEEECCC-CceeEEEEEEEEEeCCEEEEEeeEEEecC
Confidence 67999999999999886 68999999999999999999999999986
|
| >1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=230.69 Aligned_cols=117 Identities=26% Similarity=0.445 Sum_probs=104.3
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccC-CCce
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSW-NGGV 794 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~-~~~i 794 (1167)
+.+||+.||++||++|+++|+.|++||+++|.+ +|+|+.+. |.++|.++|.+||+++ ++|+++||||+. +|||
T Consensus 5 ~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~-s~~g~~~~---G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~gi 80 (125)
T 1gy7_A 5 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESML-TFETSQLQ---GAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDV 80 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEE-EETTEEEE---SHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEE-EECCcEec---CHHHHHHHHHhCCCcceEEEEEEEEEEEecCCCeE
Confidence 678999999999999999999999999997644 57887554 5577899999999876 579999999995 5899
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEeccC
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 838 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~ 838 (1167)
+|+|+|.++.++..++++|+|||+|+|++++|||+||||||++.
T Consensus 81 li~V~G~~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 81 LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124 (125)
T ss_dssp EEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEEEEEECCCCCCccEeEEEEEEEeCCEEEEEEEEEEEecC
Confidence 99999999998754799999999999999999999999999973
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-24 Score=263.24 Aligned_cols=431 Identities=12% Similarity=0.011 Sum_probs=321.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..++|+.++..+.+. |++++|+..|++++..+| +..+|..++.++.+.|++++|+.+|++++...|.+...|..++.
T Consensus 5 ~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRN--KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 467899999999874 899999999999999999 58999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH---HHHHh-------------------
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY---TRILE------------------- 233 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy---~r~l~------------------- 233 (1167)
.+. ..|++++|+..|++++...+.+.. ....++...........+...+ +++..
T Consensus 82 ~~~-~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 82 ANE-GLGKFADAMFDLSVLSLNGDFNDA---SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHSSSCCGG---GTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHH-HHhhHHHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 999 789999999999999996654322 2222222222111111111111 00000
Q ss_pred cc-----------------------hhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccC
Q 001064 234 NP-----------------------IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQ 290 (1167)
Q Consensus 234 ~p-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~ 290 (1167)
.| +.+...++.....+..... ....+++............+.. ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~--------~~~ 226 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS---PESYDKADESFTKAARLFEEQL--------DKN 226 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC---TTHHHHHHHHHHHHHHHHHHHT--------TTS
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHhhhhh--------ccC
Confidence 00 1123333333332221000 1111222211111111000000 000
Q ss_pred CccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCCh
Q 001064 291 PDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF 370 (1167)
Q Consensus 291 p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~ 370 (1167)
|+.. .........+..+..+|...+++++|+..|+++++ .++. ...|..++..+...|++
T Consensus 227 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~~~-~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 227 NEDE-----------KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE--------LFPR-VNSYIYMALIMADRNDS 286 (514)
T ss_dssp TTCH-----------HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH--------HCCC-HHHHHHHHHHHHTSSCC
T ss_pred cccc-----------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------hCcc-HHHHHHHHHHHHHCCCH
Confidence 0000 00011122334456678889999999999999998 5566 88899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 371 NKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 371 ~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
++|+..|++++..+|.+..+|..++.++...|++++|+..|++++.+. |.+..+|..++.++...|++++|+.+|+++
T Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 364 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEA- 364 (514)
T ss_dssp TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999987 788999999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHh
Q 001064 451 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLD 527 (1167)
Q Consensus 451 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~i~~kal~ 527 (1167)
++..|++..+|..++.++.+.|++++|+.+|++++...+..........+|..++.++. . .|++++|+.+|+++++
T Consensus 365 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998754221111336777887754 5 7999999999999999
Q ss_pred hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 528 HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 528 ~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
..|++...|..++.+....++ .+.+..+|++++...++++
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLARTME 483 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSSHH
T ss_pred hCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhccccH
Confidence 999999999988888888876 6678999999999877554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=269.81 Aligned_cols=444 Identities=10% Similarity=0.011 Sum_probs=330.2
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..++|+.++..+.. .+++++|+..|++++..+|++..+|..++.++.+.|++++|++.|++++...|.+...|+.++.
T Consensus 24 ~a~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFT--AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHH--TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 57889999999987 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHH---HHHHHHHhc
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYF---SSFKEFAAS 252 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~---~~~~~~~~~ 252 (1167)
.+. ..|++++|+..|+ ++...+.. ...++......+....+..+|++++...+....... .....+...
T Consensus 102 ~~~-~~g~~~~A~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 102 ANE-SLGNFTDAMFDLS-VLSLNGDF------DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHH-HHTCHHHHHHHHH-HHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHH-HcCCHHHHHHHHH-HHhcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 998 7899999999996 77644432 122233334455667889999999876332110000 000000000
Q ss_pred CCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH-----HHHHHHHHHH
Q 001064 253 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV-----REEMYKKAKE 327 (1167)
Q Consensus 253 ~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~-----~~~~y~~~~~ 327 (1167)
. ..+... ..+....+. . .....+...+.. ........++
T Consensus 174 ~------~~~~~~----~~~~~~~~~-------------------------~-~~~~~~~~~l~~~~~~~~~~~~~a~~~ 217 (537)
T 3fp2_A 174 F------DSHLEV----SSVNTSSNY-------------------------D-TAYALLSDALQRLYSATDEGYLVANDL 217 (537)
T ss_dssp S------CHHHHH----HTSCCCCSS-------------------------C-SSHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred c------ChHHHH----HHHhhcccc-------------------------c-cHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 0 000000 000000000 0 000111111111 1233444578
Q ss_pred HHHHHHHHHhhhcCCCcccCCCChhhHH-------HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001064 328 FDSKIIGFETAIRRPYFHVKPLSVTELE-------NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 328 ~~~a~~~~e~al~r~~~~v~pld~~~~~-------~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~ 400 (1167)
+.+|+..|+++++ .+|.+.. .|..++.++...|++++|+..|++++..+|. ..+|+.++.++..
T Consensus 218 ~~~A~~~~~~~l~--------~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 218 LTKSTDMYHSLLS--------ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH--------HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHH
Confidence 9999999999998 5555544 4555566777889999999999999999999 9999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 480 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~ 480 (1167)
.|++++|..+|++++... |+++.+|..++.++...|++++|+..|+++ ++++|++..+|..++.++...|++++|+.+
T Consensus 289 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA-QSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp SSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999988 889999999999999999999999999998 788999999999999999999999999999
Q ss_pred HHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH------HHHHhHhhC-------C
Q 001064 481 YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE------ALIHFESIQ-------S 547 (1167)
Q Consensus 481 ~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~------~~~~~e~~~-------~ 547 (1167)
|++++...|.. +.++..++.++.. .|++++|+.+|+++++..|++...+. ..+.+.... -
T Consensus 367 ~~~~~~~~~~~------~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 367 FNETKLKFPTL------PEVPTFFAEILTD-RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHHHCTTC------THHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----C
T ss_pred HHHHHHhCCCC------hHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhh
Confidence 99999998643 5688888988776 99999999999999998876553322 222222222 0
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 548 SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 548 ~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
..++.+.+..+|++++...+++. .++..........|+.+.+.+.+++..++.+..
T Consensus 440 ~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACELDPRSE---------QAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred hHhHHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 11447789999999999877654 578888888999999999999999999998864
|
| >2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-27 Score=232.86 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=105.5
Q ss_pred CCcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCC----------c--ccchhchHHHHHHHhcC--CCcc--e
Q 001064 716 AYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGD----------S--TESASSMLDIHSLVISL--NFTA--I 779 (1167)
Q Consensus 716 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~----------~--~~~~~~~~~i~~~~~~l--~~~~--~ 779 (1167)
..+.+||+.||++||++|+++|+.|++||+++|.|+ |+.. . ...+.|.++|.++|.+| ||++ +
T Consensus 9 p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s-~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h 87 (154)
T 2qiy_A 9 VTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELT-HTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKL 87 (154)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEE-EccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEE
Confidence 347889999999999999999999999999987666 4521 0 23456788999999999 9765 5
Q ss_pred eEeeeeccccCC--CceEEEEEEEEEecCccccceeEEEEEEeeeC--CeEEEEcceEEeccCCCc
Q 001064 780 EIKTINSLGSWN--GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE--KGYFVLNDIFHFLDEEPV 841 (1167)
Q Consensus 780 ~i~~~d~q~~~~--~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~--~~y~v~nd~fr~~~~~~~ 841 (1167)
+|.++|||++.+ +||+|+|+|.++.++. ++|+|+|||+|+|++ ++|||+||||||+++++.
T Consensus 88 ~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~-~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~~ 152 (154)
T 2qiy_A 88 KLDTIDFQYTGHLHKSILIMATGEMFWTGT-PVYKFCQTFILLPSSNGSTFDITNDIIRFISNSFK 152 (154)
T ss_dssp EEEEEEEEEESGGGCEEEEEEEEEEEETTC-CCEEEEEEEEEEECC---CEEEEEEEEEEECC---
T ss_pred EEEEEEEEEccCCCCEEEEEEEEEEEECCC-CCceEEEEEEEEEeCCCCcEEEEEEEEEEEcceec
Confidence 799999999987 9999999999999875 899999999999997 589999999999998653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-23 Score=237.43 Aligned_cols=334 Identities=11% Similarity=0.063 Sum_probs=271.5
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
|.+.|+.++..+.. .|++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...|.+...|..++.
T Consensus 2 ~~~~~~~~~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLA--AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 56788888888876 4788899999999999999988899999999988899999999999999888888888888888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCC
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPL 255 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~ 255 (1167)
++. ..|++++|+..|++++...+........|..+..+.... .+
T Consensus 80 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~------------- 123 (359)
T 3ieg_A 80 LLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ----------------------RL------------- 123 (359)
T ss_dssp HHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH----------------------HH-------------
T ss_pred HHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH----------------------HH-------------
Confidence 888 678888888888888874431001223333222211100 00
Q ss_pred cccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 256 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 335 (1167)
Q Consensus 256 ~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~ 335 (1167)
.....++...+++++|+..|
T Consensus 124 ------------------------------------------------------------~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 124 ------------------------------------------------------------RSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp ------------------------------------------------------------HHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHccCHHHHHHHH
Confidence 01123456677788888889
Q ss_pred HhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 336 ETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 336 e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
+++++ .+|.+...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|...|++++
T Consensus 144 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 144 DKILE--------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHH--------hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99887 6677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccChHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhcCCChHHH----HHHHHHHHHHcCCHHHHHH
Q 001064 416 HVFVKRLPEIHLFA------------ARFKEQNGDIDGARAAYQLVHTETSPGLLEA----IIKHANMERRLGNLEDAFS 479 (1167)
Q Consensus 416 ~~~~p~~~~l~~~~------------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~----~~~~a~~e~r~g~~e~A~~ 479 (1167)
+.. |+....|..+ +.++...|++++|...|+++ ++..|++... |..++.++...|++++|+.
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV-MKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 987 7777766544 77788999999999999998 6788987744 6678889999999999999
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 480 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 480 ~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
+|++++...|. .+.+|..++.++.. .|++++|...|+++++.+|++..++..+.....
T Consensus 294 ~~~~~~~~~~~------~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 294 ICSEVLQMEPD------NVNALKDRAEAYLI-EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99999998753 36789999999776 999999999999999999999988876665543
|
| >1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=225.52 Aligned_cols=116 Identities=22% Similarity=0.409 Sum_probs=104.5
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccC------C
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW------N 791 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~------~ 791 (1167)
+.+||+.||++||++|+++|+.|++||+++|. ++|+|+.+. |.++|.++|.+||+++++|.++|||++. +
T Consensus 13 a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~-ls~~g~~~~---G~~~I~~~l~~Lp~~~h~i~s~d~q~~~~~~~~~~ 88 (140)
T 1jkg_A 13 ACRAAEEFVNVYYTTMDKRRRLLSRLYMGTAT-LVWNGNAVS---GQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQ 88 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEE-EEETTEEEE---SHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcE-EEECCeeec---CHHHHHHHHHhCCCceeEEEEEEEEEcCCcccCCC
Confidence 46799999999999999999999999999864 458987554 5567899999999999999999999996 5
Q ss_pred CceEEEEEEEEEecCccccceeEEEEEEeeeC----CeEEEEcceEEeccC
Q 001064 792 GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE----KGYFVLNDIFHFLDE 838 (1167)
Q Consensus 792 ~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~----~~y~v~nd~fr~~~~ 838 (1167)
+||+|+|+|.++.++. ++++|+|||+|+|++ ++|||+||||||++.
T Consensus 89 ~~ilI~V~G~~~~~~~-~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 89 TTVLVVICGSVKFEGN-KQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp CEEEEEEEEEEEETTS-CCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred CeEEEEEEEEEEECCC-CceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 8999999999999876 799999999999974 799999999999985
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=255.32 Aligned_cols=358 Identities=10% Similarity=0.054 Sum_probs=294.0
Q ss_pred ccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 001064 45 VVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDA 124 (1167)
Q Consensus 45 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~ 124 (1167)
...+...+..+...+|.........+..+...|++++++..|+++++.+|.+..+|+.++..+..+ +++++|+..|++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM--GKSKAALPDLTK 85 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 344455566777777777766666777777779999999999999999999999999999999875 799999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH---HHHHHHHHH------------HHhhcCCHHHHHH
Q 001064 125 FLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV---DIWLHYCIF------------AINTYGDPETIRR 189 (1167)
Q Consensus 125 ~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~---~lw~~ya~~------------~~~~~~~~~~Ar~ 189 (1167)
+++.+|++..+|..++.++.+.|++++|+.+|++++...|.+. ..|..++.. +. ..|++++|+.
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~ 164 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF-GSGDYTAAIA 164 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 9999999999999999999999999999999999999999998 888777443 55 5799999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
+|++++...+. ...+|..++......|+++.|..+|+++++..+.+...++.
T Consensus 165 ~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------------------- 216 (450)
T 2y4t_A 165 FLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK------------------------- 216 (450)
T ss_dssp HHHHHHHHCTT---CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHH-------------------------
T ss_pred HHHHHHHhCCC---ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-------------------------
Confidence 99999996554 57889999999999999999999999998875554433331
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
+..+|...+++++|+..|++++. +
T Consensus 217 ------------------------------------------------l~~~~~~~g~~~~A~~~~~~~~~--------~ 240 (450)
T 2y4t_A 217 ------------------------------------------------ISTLYYQLGDHELSLSEVRECLK--------L 240 (450)
T ss_dssp ------------------------------------------------HHHHHHHTTCHHHHHHHHHHHHH--------H
T ss_pred ------------------------------------------------HHHHHHHcCCHHHHHHHHHHHHH--------h
Confidence 12345566778888888888887 5
Q ss_pred ChhhHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 350 SVTELENWHNY------------LDFIERDGDFNKVVKLYERCLIACANYPE----YWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 350 d~~~~~~W~~y------------~~~~e~~g~~~~a~~~yeral~~~p~~~~----~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
+|.....|..+ +..+...|++++|+.+|++++...|.++. +|..++.++...|++++|...|++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666665 77788899999999999999999999854 788889999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH------------HHHcC-----CHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM------------ERRLG-----NLED 476 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~------------e~r~g-----~~e~ 476 (1167)
++.+. |+++.+|+.++.++...|++++|+..|+++ ++++|++..+|..++.+ +..+| +.++
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETA-QEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 99987 889999999999999999999999999998 78999999998888844 33344 5678
Q ss_pred HHHHHHH-HHHhhhCC
Q 001064 477 AFSLYEQ-AIAIEKGK 491 (1167)
Q Consensus 477 A~~~~~k-Al~~~~~~ 491 (1167)
++..|++ ++...|++
T Consensus 399 ~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 399 IIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8999987 78777754
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-22 Score=227.42 Aligned_cols=312 Identities=10% Similarity=0.063 Sum_probs=253.9
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 149 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~ 149 (1167)
+..+...|++++++..|+++++.+|.+.++|+.++..+..+ +++++|...|++++..+|++..+|..++.++...|++
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM--GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh
Confidence 34445558999999999999999999999999999999885 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC---CCHHHHHHH------------HHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001064 150 DKVVEVYERAVQGVT---YSVDIWLHY------------CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 214 (1167)
Q Consensus 150 e~A~~l~eraL~~~P---~s~~lw~~y------------a~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~ 214 (1167)
++|+.+|++++...| .+.+.|..+ +..+. ..|++++|..+|++++...+. ...+|...+..
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~ 163 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF-DGADYTAAITFLDKILEVCVW---DAELRELRAEC 163 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC---chHHHHHHHHH
Confidence 999999999999999 899999887 45666 679999999999999996655 47899999999
Q ss_pred HHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccc
Q 001064 215 EYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 294 (1167)
Q Consensus 215 e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~ 294 (1167)
....++++.|...|+++++..+.+...++..
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------------------------------------------- 194 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKI------------------------------------------------- 194 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSCCHHHHHHH-------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------------------------------
Confidence 9999999999999999998866654433311
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH------------HH
Q 001064 295 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY------------LD 362 (1167)
Q Consensus 295 e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y------------~~ 362 (1167)
..+|...+++++|+..|+++++ ++|.....|..+ +.
T Consensus 195 ------------------------a~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 195 ------------------------STLYYQLGDHELSLSEVRECLK--------LDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp ------------------------HHHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHcCCHHHHHHHHHHHHh--------hCccchHHHHHHHHHHHHHHHHHHHH
Confidence 2345566778888888988887 555555555544 44
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC
Q 001064 363 FIERDGDFNKVVKLYERCLIACANYPEY----WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 438 (1167)
Q Consensus 363 ~~e~~g~~~~a~~~yeral~~~p~~~~~----w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~ 438 (1167)
.+...|++++|+..|++++...|.+..+ |..++.++...|++++|..+|+++++.. |+++.+|+.++.++...|+
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC
Confidence 5667788888888888888887777643 4456777777788888888888888776 6777788888888888888
Q ss_pred HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 439 IDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 439 ~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
+++|...|+++ ++++|++..++..+..+...
T Consensus 322 ~~~A~~~~~~a-~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 322 YDEAIQDYEAA-QEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCChHHHHHHHHHHHH
Confidence 88888888887 67788877777666655443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-21 Score=216.43 Aligned_cols=301 Identities=10% Similarity=0.030 Sum_probs=248.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 86 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 86 l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
+...+...+.+.+.+..++..+.. .+++++|+++|++++..+|.+...|..++..+...|++++|+.+|++++...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYY--NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp ---------CCCTTHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHhhchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence 446667778888888999988887 489999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHH
Q 001064 166 SVDIWLHYCIFAINTYG-DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 244 (1167)
Q Consensus 166 s~~lw~~ya~~~~~~~~-~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~ 244 (1167)
+..+|...+..+. ..| ++++|+..|++++...+. ....|..++......++++.|...|+++++..+.+...++.
T Consensus 89 ~~~~~~~l~~~~~-~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 89 NPVSWFAVGCYYL-MVGHKNEHARRYLSKATTLEKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp STHHHHHHHHHHH-HSCSCHHHHHHHHHHHHTTCTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred CHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 9999999999888 567 899999999999985443 56789999999999999999999999988765543222221
Q ss_pred HHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH
Q 001064 245 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 324 (1167)
Q Consensus 245 ~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~ 324 (1167)
+..+|..
T Consensus 165 -------------------------------------------------------------------------l~~~~~~ 171 (330)
T 3hym_B 165 -------------------------------------------------------------------------IGLEYGL 171 (330)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1234566
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---------CCCHHHHHHHH
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC---------ANYPEYWIRYV 395 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~---------p~~~~~w~~ya 395 (1167)
.+++++|+..|+++++ ++|.+...|..++..+...|++++|+..|++++... +....+|..++
T Consensus 172 ~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 172 TNNSKLAERFFSQALS--------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp TTCHHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 7778888888999887 677778889999999999999999999999999886 66678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH-HHcCCH
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME-RRLGNL 474 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e-~r~g~~ 474 (1167)
.++...|++++|+..|++++++. |++..+|..++.++...|++++|...|+++ ++++|++..+|..++..+ ...|+.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA-LGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT-TTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH-HccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999887 788899999999999999999999999998 788999999988888765 455654
Q ss_pred H
Q 001064 475 E 475 (1167)
Q Consensus 475 e 475 (1167)
+
T Consensus 322 ~ 322 (330)
T 3hym_B 322 E 322 (330)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-20 Score=214.69 Aligned_cols=304 Identities=8% Similarity=-0.013 Sum_probs=258.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 121 VYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 121 ~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.....+...|.+...++..+..+...|++++|+++|++++...|.+...|..++..+. ..|++++|..+|++++...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp ----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcC
Confidence 3456677788999999999999999999999999999999999999999999998888 679999999999999996554
Q ss_pred CCCCHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccc
Q 001064 201 DYLSFPLWDKYIEYEYMQQ-EWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETG 279 (1167)
Q Consensus 201 d~~s~~lw~~y~~~e~~~~-~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~ 279 (1167)
+..+|...+......+ +++.|...|++++...+.+...++
T Consensus 89 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------------------------------ 129 (330)
T 3hym_B 89 ---NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWI------------------------------------ 129 (330)
T ss_dssp ---STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHH------------------------------------
T ss_pred ---CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHH------------------------------------
Confidence 4788999999999999 999999999999987665443332
Q ss_pred hhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHH
Q 001064 280 AEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN 359 (1167)
Q Consensus 280 ~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~ 359 (1167)
.+..+|...+++++|+..|+++++ +++.....|..
T Consensus 130 -------------------------------------~l~~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~ 164 (330)
T 3hym_B 130 -------------------------------------AYGHSFAVESEHDQAMAAYFTAAQ--------LMKGCHLPMLY 164 (330)
T ss_dssp -------------------------------------HHHHHHHHHTCHHHHHHHHHHHHH--------HTTTCSHHHHH
T ss_pred -------------------------------------HHHHHHHHccCHHHHHHHHHHHHH--------hccccHHHHHH
Confidence 112345667888899999999998 56666778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------ccChHHHHHHHH
Q 001064 360 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV--------KRLPEIHLFAAR 431 (1167)
Q Consensus 360 y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--------p~~~~l~~~~a~ 431 (1167)
++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|...|++++.+.+ +....+|..++.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999763 456789999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
++...|++++|+..|+++ +++.|++..+|..++.++.++|++++|+.+|+++++..|+ .+.++..++..+...
T Consensus 245 ~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQA-LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD------DTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC------CHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHH-HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC------chHHHHHHHHHHHHH
Confidence 999999999999999998 7889999999999999999999999999999999999864 366788888876554
Q ss_pred hCCHH
Q 001064 512 SRNAE 516 (1167)
Q Consensus 512 ~g~~~ 516 (1167)
.|+.+
T Consensus 318 ~g~~~ 322 (330)
T 3hym_B 318 IGDSE 322 (330)
T ss_dssp TTC--
T ss_pred hCchh
Confidence 66544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-21 Score=216.03 Aligned_cols=243 Identities=17% Similarity=0.268 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHHHh----CCH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHh------hcCCH-------HHHHH
Q 001064 131 LCYGYWKKYADHEARV----GSM----DKVVEVYERAVQGVTYSVDIWLHYCIFAIN------TYGDP-------ETIRR 189 (1167)
Q Consensus 131 ~~~~~W~~~a~~e~~~----~~~----e~A~~l~eraL~~~P~s~~lw~~ya~~~~~------~~~~~-------~~Ar~ 189 (1167)
....+|++|+++|.+. ++. ++|+.+|+++|..+|.++++|+.|+.++.. ..|++ ++|+.
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 3456777777777664 232 567777777777777777777777777652 13554 67777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
+|++|+..+ ++.+..+|..|+.++...|++++|+.+|+++|++++.+..
T Consensus 86 ~~~rAl~~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----------------------------- 134 (308)
T 2ond_A 86 IYERAISTL--LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT----------------------------- 134 (308)
T ss_dssp HHHHHHTTT--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH-----------------------------
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc-----------------------------
Confidence 777777631 2234667777777777777777777777666554432111
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
T Consensus 135 -------------------------------------------------------------------------------- 134 (308)
T 2ond_A 135 -------------------------------------------------------------------------------- 134 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~-~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
.+|..|+.++.+.|++++|+.+|++++..+|....+|+.++.+... .|+.++|+.+|+++++.+ |+++.+|+.
T Consensus 135 -----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (308)
T 2ond_A 135 -----LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLA 208 (308)
T ss_dssp -----HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 0355555555555666666666666666666666666665554332 466666666666666665 566666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhh--cCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTE--TSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~--~~P~-~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
++.++.+.|++++|+.+|++++.. +.|+ ...+|..++.++.+.|++++|+.+++++++..|.
T Consensus 209 ~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 666666666777777777766321 2443 5667777777777777777777777777777664
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=223.46 Aligned_cols=385 Identities=12% Similarity=0.048 Sum_probs=271.1
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHH
Q 001064 82 EEDRLWNIVKANSSD--FSAWTALLEETEKLAQDNIVKIRRVYDAFLAE---------FPLCYGYWKKYADHEARVGSMD 150 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d--~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~---------~P~~~~~W~~~a~~e~~~~~~e 150 (1167)
.++++...++..+.. ...+..|+.++.. .|++++|++.|++++++ +|.....|..++.++..+|+++
T Consensus 34 ~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~--~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~ 111 (472)
T 4g1t_A 34 FEDKVFYRTEFQNREFKATMCNLLAYLKHL--KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS 111 (472)
T ss_dssp HHHHHHHHTTSCC---CCHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChH
Confidence 334444444443333 4455678888776 48999999999999987 6777888999999999999999
Q ss_pred HHHHHHHHHHhcc--------CCCHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---h
Q 001064 151 KVVEVYERAVQGV--------TYSVDIWLHYCIFAIN-TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---Q 218 (1167)
Q Consensus 151 ~A~~l~eraL~~~--------P~s~~lw~~ya~~~~~-~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~---~ 218 (1167)
+|+..|++++.+. +....++...+..+.. ..+++++|+..|++++...|. ...+|..++..... .
T Consensus 112 ~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCc
Confidence 9999999999864 2345555554433331 235789999999999996655 46677777665443 3
Q ss_pred hhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccC
Q 001064 219 QEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTS 298 (1167)
Q Consensus 219 ~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~ 298 (1167)
++.+.|...|++++++.+.+...+......+
T Consensus 189 ~~~~~al~~~~~al~l~p~~~~~~~~l~~~~------------------------------------------------- 219 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKL------------------------------------------------- 219 (472)
T ss_dssp CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH-------------------------------------------------
T ss_pred hHHHHHHHHHHHHhhcCCcchHHHHHHHHHH-------------------------------------------------
Confidence 4557788899999988776555443222111
Q ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHH
Q 001064 299 KPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 378 (1167)
Q Consensus 299 ~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~ye 378 (1167)
..++...+++++++..|++++. ++|.....|..++.++...|++++|+..|+
T Consensus 220 --------------------~~~~~~~~~~~~a~~~~~~al~--------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 220 --------------------HKMREEGEEEGEGEKLVEEALE--------KAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp --------------------HHCC------CHHHHHHHHHHH--------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------HHHHhhhhHHHHHHHHHHHHHH--------hCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 1122334556677777888887 677888999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCH
Q 001064 379 RCLIACANYPEYWIRYVLCMEAS-------------------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI 439 (1167)
Q Consensus 379 ral~~~p~~~~~w~~ya~~l~~~-------------------g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~ 439 (1167)
+++...|.+..+|..++.++... +..+.|...|++++++. |....++..++.++...|++
T Consensus 272 ~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 99999999999999998766432 23567888999999887 78888999999999999999
Q ss_pred HHHHHHHHHHhhhcCCChHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001064 440 DGARAAYQLVHTETSPGLLE---AIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515 (1167)
Q Consensus 440 ~~A~~~~~~a~~~~~P~~~~---~~~~~a~~e-~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 515 (1167)
++|+..|+++ +++.|++.. +++.++.+. ...|++++|+..|++++.+.+.. .. ..+..
T Consensus 351 ~~A~~~~~ka-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~------~~-----------~~~~~ 412 (472)
T 4g1t_A 351 EEAEYYFQKE-FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS------RE-----------KEKMK 412 (472)
T ss_dssp HHHHHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC------HH-----------HHHHH
T ss_pred HHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc------HH-----------HHHHH
Confidence 9999999998 677777654 356666553 46799999999999999998642 10 12235
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 516 EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 516 ~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
..+.++++++++.+|++...|..++.+....|+ .+.+..+|+++|...+.++
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~---~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEK---MQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH---CC-----------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCC
Confidence 667788999999999999888877776665543 4568899999998877665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-19 Score=217.17 Aligned_cols=372 Identities=14% Similarity=0.025 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC---
Q 001064 133 YGYWKKYADHEARVGSMDKVVEVYERAVQG---------VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT--- 200 (1167)
Q Consensus 133 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~---------~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~--- 200 (1167)
..++..++.++..+|++++|++.|++++.+ +|.....|..++..+. ..|++++|...|++++...+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhccc
Confidence 467778999999999999999999999986 4667778888888888 789999999999999976431
Q ss_pred --CCCCHHHHHHHHHHH--HHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCC
Q 001064 201 --DYLSFPLWDKYIEYE--YMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPS 276 (1167)
Q Consensus 201 --d~~s~~lw~~y~~~e--~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~ 276 (1167)
+.....++...+..+ ...+++++|+..|++++++.|.+.+.++.....+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~-------------------------- 183 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY-------------------------- 183 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------
Confidence 222344444433322 33467999999999999998887765543221110
Q ss_pred ccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHH
Q 001064 277 ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN 356 (1167)
Q Consensus 277 e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~ 356 (1167)
.+...++.++++..|+++|+ ++|.....
T Consensus 184 --------------------------------------------~l~~~~~~~~al~~~~~al~--------l~p~~~~~ 211 (472)
T 4g1t_A 184 --------------------------------------------RLDNWPPSQNAIDPLRQAIR--------LNPDNQYL 211 (472)
T ss_dssp --------------------------------------------HHHHSCCCCCTHHHHHHHHH--------HCSSCHHH
T ss_pred --------------------------------------------HhcCchHHHHHHHHHHHHhh--------cCCcchHH
Confidence 01112233445666778887 67776777
Q ss_pred HHHHHHHH----HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 357 WHNYLDFI----ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 357 W~~y~~~~----e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
|..++..+ ...+++++|+.+|++++...|.+..+|..++.++...|++++|...|++++++. |++..+|..++.+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHH
Confidence 76665433 345788999999999999999999999999999999999999999999999988 8889998888776
Q ss_pred HHH-------------------cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001064 433 KEQ-------------------NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 493 (1167)
Q Consensus 433 ~e~-------------------~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~ 493 (1167)
+.. .+.++.|...|+++ .+++|.+..+|..++.++...|++++|+.+|+++|...++.
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~-- 367 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA-DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP-- 367 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH-HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH--
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH-hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC--
Confidence 533 23467788899998 78899999999999999999999999999999999987532
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCC
Q 001064 494 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTA 573 (1167)
Q Consensus 494 ~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l 573 (1167)
.....++..++.+.....|++++|...|+++|++.|++..... ..+.+.+++++++..+|.+..
T Consensus 368 -~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-------------~~~~l~~~~~~~l~~~p~~~~-- 431 (472)
T 4g1t_A 368 -VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-------------MKDKLQKIAKMRLSKNGADSE-- 431 (472)
T ss_dssp -HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-------------HHHHHHHHHHHHHHHCC-CTT--
T ss_pred -hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-------------HHHHHHHHHHHHHHhCCCCHH--
Confidence 1123456778877665689999999999999999999864321 134567788899998887763
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001064 574 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 610 (1167)
Q Consensus 574 ~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~ 610 (1167)
+|..........|+.+.+.+.++|..++-+
T Consensus 432 -------~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 432 -------ALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp -------HHHHHHHHHHHHHHCC--------------
T ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 677777777778888888888888877643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=218.89 Aligned_cols=305 Identities=11% Similarity=-0.032 Sum_probs=242.9
Q ss_pred hhHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHH
Q 001064 113 DNIVKIRR-VYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETI 187 (1167)
Q Consensus 113 ~~~~~ar~-~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~A 187 (1167)
+++++|.. .|++++...|.++ ..|+.++..+.+.|++++|+.+|++++...|.+..+|..++..+. ..|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHH
Confidence 46777777 8888888887763 568888888888889999999999998888888888888888887 67888888
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Q 001064 188 RRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAA 267 (1167)
Q Consensus 188 r~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~ 267 (1167)
+..|++++...+. ...+|..++......|+++.|...|++++...+.+...+..... ...
T Consensus 118 ~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------- 177 (368)
T 1fch_A 118 ISALRRCLELKPD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE-GAG---------------- 177 (368)
T ss_dssp HHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------------
T ss_pred HHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH-Hhh----------------
Confidence 8889988886544 46788888888888888888888888888875543221110000 000
Q ss_pred HHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccC
Q 001064 268 AVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVK 347 (1167)
Q Consensus 268 ~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~ 347 (1167)
... ... .......++ ..+++++|+..|+++++
T Consensus 178 ----------~~~---------------------------~~~---~~~~~~~~~-~~~~~~~A~~~~~~a~~------- 209 (368)
T 1fch_A 178 ----------GAG---------------------------LGP---SKRILGSLL-SDSLFLEVKELFLAAVR------- 209 (368)
T ss_dssp ------------------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHH-------
T ss_pred ----------hhc---------------------------ccH---HHHHHHHHh-hcccHHHHHHHHHHHHH-------
Confidence 000 000 000112234 67889999999999998
Q ss_pred CCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH
Q 001064 348 PLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 348 pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
++|. ....|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+..|++++.+. |.+..+
T Consensus 210 -~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 287 (368)
T 1fch_A 210 -LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRS 287 (368)
T ss_dssp -HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 5666 678899999999999999999999999999999999999999999999999999999999999987 788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTETSPGL-----------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-----------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
|..++.++...|++++|+..|+++ +++.|++ ..+|..++.++..+|++++|..+++++++...
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEA-LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 999999999999999999999998 6778877 89999999999999999999999999888764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-20 Score=215.15 Aligned_cols=298 Identities=11% Similarity=0.014 Sum_probs=235.1
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001064 120 RVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 195 (1167)
Q Consensus 120 ~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral 195 (1167)
..+++.+...+.+. ..|+..+..+.+.|++++|+.+|++++...|.+...|..++..+. ..|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 44455555555554 449999999999999999999999999999999999999999998 7899999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCC
Q 001064 196 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 275 (1167)
Q Consensus 196 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~ 275 (1167)
...+. ....|..++..+...|++++|..+|++++++.+.+...++...
T Consensus 127 ~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----------------------------- 174 (365)
T 4eqf_A 127 ELQPN---NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK----------------------------- 174 (365)
T ss_dssp HHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCCC---CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-----------------------------
Confidence 96554 5788999999999999999999999999886554222111000
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHH
Q 001064 276 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE 355 (1167)
Q Consensus 276 ~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~ 355 (1167)
....
T Consensus 175 ----------------------------------------------------------------------------~~~~ 178 (365)
T 4eqf_A 175 ----------------------------------------------------------------------------GSPG 178 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------cchH
Confidence 0011
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~--~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
.+..++..+...|++++|+.+|++++...|. ++.+|..++.++...|++++|+.+|++++++. |+++.+|..++.++
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATL 257 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 2333344455677888999999999999998 89999999999999999999999999999987 78899999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc------CchHHHHHHHHHH
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS------QTLPMLYAQYSRF 507 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~------~~~~~l~~~~a~~ 507 (1167)
...|++++|+..|+++ ++++|++..+|..++.++.++|++++|+.+|+++++..|..... .....+|..++..
T Consensus 258 ~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRA-LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH
Confidence 9999999999999998 78899999999999999999999999999999999998753210 1124678888888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhc
Q 001064 508 LHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 508 ~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
+.. .|+.+.+..++++.+...
T Consensus 337 ~~~-~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 337 LSL-MDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHH-HTCHHHHHHHHTTCCGGG
T ss_pred HHH-cCcHHHHHHHHHhhHHHH
Confidence 665 999999999988876644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=215.32 Aligned_cols=316 Identities=12% Similarity=0.060 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhccCCC----HHHHHHHHHHHHhhcCCHHHHHH
Q 001064 115 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE-VYERAVQGVTYS----VDIWLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 115 ~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~-l~eraL~~~P~s----~~lw~~ya~~~~~~~~~~~~Ar~ 189 (1167)
...+...++.+....|.+ +...+++++|++ .|++++...|.+ ...|+..+..+. ..|++++|+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~ 85 (368)
T 1fch_A 17 WDKLQAELEEMAKRDAEA----------HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRL-QEGDLPNAVL 85 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCchh----------hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHH-HCCCHHHHHH
Confidence 334444555555555542 223478999999 999999988866 466889998888 7899999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
.|++++... +....+|..++......|+++.|...|++++++.+.+...++..
T Consensus 86 ~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l------------------------ 138 (368)
T 1fch_A 86 LFEAAVQQD---PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL------------------------ 138 (368)
T ss_dssp HHHHHHHSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------------------
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHH------------------------
Confidence 999999954 44578999999999999999999999999998866654443322
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
..+|...+++++|+..|+++++ +
T Consensus 139 -------------------------------------------------~~~~~~~g~~~~A~~~~~~~~~--------~ 161 (368)
T 1fch_A 139 -------------------------------------------------AVSFTNESLQRQACEILRDWLR--------Y 161 (368)
T ss_dssp -------------------------------------------------HHHHHHTTCHHHHHHHHHHHHH--------T
T ss_pred -------------------------------------------------HHHHHHcCCHHHHHHHHHHHHH--------h
Confidence 2345556677778888888887 4
Q ss_pred ChhhHHHHH----------------HHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 350 SVTELENWH----------------NYLDFIERDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNAL 411 (1167)
Q Consensus 350 d~~~~~~W~----------------~y~~~~e~~g~~~~a~~~yeral~~~p~--~~~~w~~ya~~l~~~g~~e~A~~vl 411 (1167)
+|.....|. .+..++ ..|++++|+.+|++++..+|. ...+|..++.++...|++++|+..|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 162 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp STTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444443 334444 788999999999999999999 8999999999999999999999999
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 412 ARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 412 ~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
++++.+. |+++.+|..++.++...|++++|+..|+++ +++.|++..+|..++.++.++|++++|+.+|++++...|..
T Consensus 241 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 241 TAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRA-LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999987 788999999999999999999999999998 78899999999999999999999999999999999998754
Q ss_pred C-----ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 492 E-----HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 492 ~-----~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
. ..+....+|..++.++.. .|++++|..+++++++..
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSM-LGQSDAYGAADARDLSTL 360 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHH-HTCGGGHHHHHTTCHHHH
T ss_pred CCccccccchhhHHHHHHHHHHHH-hCChHhHHHhHHHHHHHH
Confidence 1 112236789999999776 999999999999888653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=210.38 Aligned_cols=280 Identities=8% Similarity=-0.039 Sum_probs=226.7
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
+...|+.++..+... +++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++...|.+...|..++.
T Consensus 64 ~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKE--GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 455699999999874 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCC
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPL 255 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~ 255 (1167)
.+. ..|++++|+..|++++...+.+. .+|..+. ....++..
T Consensus 142 ~~~-~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~-------------------------~~~~~~~~---------- 182 (365)
T 4eqf_A 142 SYT-NTSHQQDACEALKNWIKQNPKYK---YLVKNKK-------------------------GSPGLTRR---------- 182 (365)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCHHHH---CC------------------------------------------------
T ss_pred HHH-ccccHHHHHHHHHHHHHhCccch---HHHhhhc-------------------------cchHHHHH----------
Confidence 998 78999999999999998654431 1121110 00000000
Q ss_pred cccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 256 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 335 (1167)
Q Consensus 256 ~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~ 335 (1167)
...+|...+++++|+..|
T Consensus 183 --------------------------------------------------------------l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 183 --------------------------------------------------------------MSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp --------------------------------------------------------------------CCHHHHHHHHHH
T ss_pred --------------------------------------------------------------HHHHHhhhhhHHHHHHHH
Confidence 001233345566667777
Q ss_pred HhhhcCCCcccCCCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 336 ETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 336 e~al~r~~~~v~pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
+++++ ++|. ....|..++.++...|++++|+.+|++++..+|.+..+|..++.++...|++++|+..|++
T Consensus 201 ~~al~--------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 201 LEAAH--------QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHH--------HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH--------hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77776 4444 5678888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLY 481 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~~~ 481 (1167)
++++. |++..+|..++.++...|++++|+..|+++ +++.|+ +..+|..++..+..+|+.+.+..++
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTA-LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH-HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99987 788999999999999999999999999998 666766 3578999999999999999998888
Q ss_pred HHHHHhh
Q 001064 482 EQAIAIE 488 (1167)
Q Consensus 482 ~kAl~~~ 488 (1167)
++.+...
T Consensus 351 ~~~l~~~ 357 (365)
T 4eqf_A 351 LGDLDVL 357 (365)
T ss_dssp TTCCGGG
T ss_pred HhhHHHH
Confidence 8766655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-19 Score=199.70 Aligned_cols=287 Identities=8% Similarity=-0.022 Sum_probs=239.4
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001064 95 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 174 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya 174 (1167)
.+.+.|+.++..+.. .+++++|+.+|++++..+|.+...|..++.++...|++++|+.+|++++...|.+...|..++
T Consensus 19 ~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLK--LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 356778888888876 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCC
Q 001064 175 IFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRP 254 (1167)
Q Consensus 175 ~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~ 254 (1167)
..+. ..|++++|+..|++++...+.+. .+|..+... .+ ... ..+
T Consensus 97 ~~~~-~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~-~~~-~~~----------- 140 (327)
T 3cv0_A 97 VSHT-NEHNANAALASLRAWLLSQPQYE---QLGSVNLQA-------------------DV-DID-DLN----------- 140 (327)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHTSTTTT---TC-----------------------------------------------
T ss_pred HHHH-HcCCHHHHHHHHHHHHHhCCccH---HHHHHHhHH-------------------HH-HHH-HHH-----------
Confidence 9888 68999999999999998655432 122111000 00 000 000
Q ss_pred CcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001064 255 LSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE-MYKKAKEFDSKII 333 (1167)
Q Consensus 255 ~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~-~y~~~~~~~~a~~ 333 (1167)
..... ++...+++++|+.
T Consensus 141 -------------------------------------------------------------~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 141 -------------------------------------------------------------VQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp ------------------------------------------------------------------CCTTSHHHHHHHHH
T ss_pred -------------------------------------------------------------HHHHhHHHHHcccHHHHHH
Confidence 00001 1344567778888
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
.|+++++ .++.....|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|...|++
T Consensus 160 ~~~~~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 160 LLHAALE--------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHH--------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHh--------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999887 56667889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLY 481 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~~~ 481 (1167)
++... |++..+|..++.++...|++++|+..|+++ +++.|+ +..+|..++.++.++|++++|..++
T Consensus 232 a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRA-IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99987 788999999999999999999999999998 778898 8999999999999999999999999
Q ss_pred HHHHHhhhC
Q 001064 482 EQAIAIEKG 490 (1167)
Q Consensus 482 ~kAl~~~~~ 490 (1167)
++++...+.
T Consensus 310 ~~~l~~~~~ 318 (327)
T 3cv0_A 310 AQNVEPFAK 318 (327)
T ss_dssp TCCSHHHHH
T ss_pred HHHHHhcch
Confidence 999988753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-16 Score=192.43 Aligned_cols=191 Identities=8% Similarity=-0.025 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~----~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~ 400 (1167)
.+++++++..|+++++ . .....+..++.++.. .+++++|+.+|++++.. .+++.++.++.++..
T Consensus 236 ~~~~~~A~~~~~~a~~--------~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAE--------Q--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDK 303 (490)
T ss_dssp CCCHHHHHHHHHHHHT--------T--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--------C--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Confidence 4567788888999886 2 234567788887777 78999999999999865 678999999999888
Q ss_pred c-----CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH--
Q 001064 401 S-----GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG---DIDGARAAYQLVHTETSPGLLEAIIKHANMERR-- 470 (1167)
Q Consensus 401 ~-----g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g---~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r-- 470 (1167)
. ++.++|+..|+++++. .++..++.++.++...| ++++|+..|+++ .+. ++..+++.++.++..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a-~~~--~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQ---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKA-AAK--GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-HHT--TCHHHHHHHHHHHHHTS
T ss_pred CCCCCcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHcCC
Confidence 7 8999999999999874 46788999999988866 889999999998 443 678999999999988
Q ss_pred --cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhhcCC---CHHHHHHHHH
Q 001064 471 --LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHVQL---SKPLLEALIH 541 (1167)
Q Consensus 471 --~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~~~Ar~i~~kal~~~p~---~~~l~~~~~~ 541 (1167)
.+++++|..+|++|++... +..+..++.++.. ..+++++|+..|++|++..|+ +...+..+..
T Consensus 378 g~~~~~~~A~~~~~~A~~~~~--------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQGL--------SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 8999999999999998642 6688888888654 268999999999999999855 5555444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=202.64 Aligned_cols=109 Identities=6% Similarity=0.044 Sum_probs=96.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhccCCCH
Q 001064 89 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVYERAVQGVTYSV 167 (1167)
Q Consensus 89 ~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~eraL~~~P~s~ 167 (1167)
+|..+|.+.++|..++.++... +++++|+..|+++|.++|++..+|..++.++...|+ +++|+..|+++|.+.|.+.
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~--g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRD--ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhCChhhHHHHHHHHHHHHHC--CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 4668899999999999999874 789999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 168 DIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 168 ~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.+|.+.+..+. ..|++++|+..|+++|...|.
T Consensus 167 ~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 167 QVWHHRRVLVE-WLRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp HHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcc
Confidence 99999998887 667777777777777774443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=199.49 Aligned_cols=254 Identities=9% Similarity=0.002 Sum_probs=188.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHhcCCCCC
Q 001064 125 FLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-PETIRRLFERGLAYVGTDYL 203 (1167)
Q Consensus 125 ~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~-~~~Ar~~feral~~~g~d~~ 203 (1167)
+|...|++..+|..++.++.+.|++++|+++|+++|.++|.+..+|...+..+. ..|+ +++|+..|+++|...|.+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~-- 165 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKN-- 165 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCC--
Confidence 456778888999999999999999999999999999999999999999988887 5564 777777766666633332
Q ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhh
Q 001064 204 SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVK 283 (1167)
Q Consensus 204 s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~ 283 (1167)
T Consensus 166 -------------------------------------------------------------------------------- 165 (382)
T 2h6f_A 166 -------------------------------------------------------------------------------- 165 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHH
Q 001064 284 ANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 363 (1167)
Q Consensus 284 ~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~ 363 (1167)
..+|..++..
T Consensus 166 ----------------------------------------------------------------------~~a~~~~g~~ 175 (382)
T 2h6f_A 166 ----------------------------------------------------------------------YQVWHHRRVL 175 (382)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 2223333333
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH-cCCHHHH
Q 001064 364 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ-NGDIDGA 442 (1167)
Q Consensus 364 ~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~-~g~~~~A 442 (1167)
+...|++++|+..|+++|..+|.+..+|+.++.++...|++++|+..|++++++. |++..+|..++.++.. .|.+++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 3445666667777777777777777777777777777777777777777777766 6677777777777766 4444555
Q ss_pred -----HHHHHHHhhhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---
Q 001064 443 -----RAAYQLVHTETSPGLLEAIIKHANMERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS--- 512 (1167)
Q Consensus 443 -----~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g--~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~--- 512 (1167)
+..|+++ ++++|++..+|+.++.++...| ++++|+..++++ +..+ ..+.++..++.++.. .
T Consensus 255 ~~~~el~~~~~A-l~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p------~~~~al~~La~~~~~-~~~~ 325 (382)
T 2h6f_A 255 VLEREVQYTLEM-IKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH------SSPYLIAFLVDIYED-MLEN 325 (382)
T ss_dssp HHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC------CCHHHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC------CCHHHHHHHHHHHHH-Hhcc
Confidence 4778887 6788999889988888887777 688888888776 4443 336677788888665 4
Q ss_pred -----CC-HHHHHHHHHHH-HhhcCCCHHHHHHHHH
Q 001064 513 -----RN-AEKARQILVDS-LDHVQLSKPLLEALIH 541 (1167)
Q Consensus 513 -----g~-~~~Ar~i~~ka-l~~~p~~~~l~~~~~~ 541 (1167)
++ +++|+++|+++ ++++|....+|..++.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 23 59999999999 9999999999965543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=193.89 Aligned_cols=275 Identities=11% Similarity=0.054 Sum_probs=200.9
Q ss_pred CCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001064 66 GAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR 145 (1167)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~ 145 (1167)
.+..+..+...+++++++..|+++++.+|.+..+|..++..+... +++++|...|++++..+|.+...|..++.++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 344455555569999999999999999999999999999999874 799999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH-HH-HHHHhhhHHH
Q 001064 146 VGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKY-IE-YEYMQQEWSR 223 (1167)
Q Consensus 146 ~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y-~~-~e~~~~~~~~ 223 (1167)
.|++++|++.|++++...|.+..+|..+...... .. ..+ .+ .. +....+++++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------------------~~~-~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVD------ID------------------DLN-VQSEDFFFAAPNEYRE 156 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC---------------------------------------------CCTTSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH------HH------------------HHH-HHHHhHHHHHcccHHH
Confidence 9999999999999999999988877766222110 00 000 00 00 1122355566
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 224 VAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 224 A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
|..+|+++++..+.+...++..
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~l---------------------------------------------------------- 178 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASL---------------------------------------------------------- 178 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHhhCCCCHHHHHHH----------------------------------------------------------
Confidence 6666666665544433222211
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
..+|...+++++|+..|+++++ ++|.....|..++..+...|++++|+..|++++..
T Consensus 179 ---------------a~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 179 ---------------GVLYNLSNNYDSAAANLRRAVE--------LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp ---------------HHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHhccHHHHHHHHHHHHH--------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1123344555556666666665 45555667777777777888888888888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc------------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR------------LPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~------------~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
+|.+..+|..++.++...|++++|...|++++.+. |. ...+|..++.++...|++++|..+++++
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888877 55 6788888888888888888888888765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-15 Score=178.38 Aligned_cols=372 Identities=10% Similarity=-0.010 Sum_probs=292.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 001064 82 EEDRLWNIVKANSSDFSAWTALLEETEKL--AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEV 155 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d~~aw~~L~~~~~~~--~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l 155 (1167)
++..++++.+ +.|.++++.|+..+..- ..+++++|...|+++++. .+..++..++.++.. .+++++|++.
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4566665544 77999999999988751 036899999999999987 678999999999999 8999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHH
Q 001064 156 YERAVQGVTYSVDIWLHYCIFAINT---YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIY 228 (1167)
Q Consensus 156 ~eraL~~~P~s~~lw~~ya~~~~~~---~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~----~~~~~~A~~iy 228 (1167)
|++++.. .+...+..++.++... .+++++|...|++++.. + ....+..++.+... .+++++|+..|
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G----RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999985 5889999999888831 57999999999999973 2 35667777777666 67899999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchH
Q 001064 229 TRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEA 308 (1167)
Q Consensus 229 ~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~ 308 (1167)
+++++.. +...++....
T Consensus 175 ~~a~~~~--~~~a~~~Lg~------------------------------------------------------------- 191 (490)
T 2xm6_A 175 SKAAEQG--NVWSCNQLGY------------------------------------------------------------- 191 (490)
T ss_dssp HHHHHTT--CHHHHHHHHH-------------------------------------------------------------
T ss_pred HHHHHCC--CHHHHHHHHH-------------------------------------------------------------
Confidence 9998752 2233332221
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 001064 309 EELEKYIAVREEMYKK----AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERC 380 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~----~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~----~g~~~~a~~~yera 380 (1167)
+|.. .+++++|+..|+++++ .+ +...+..++.++.. .+++++|+.+|+++
T Consensus 192 ------------~y~~g~g~~~~~~~A~~~~~~a~~--------~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 192 ------------MYSRGLGVERNDAISAQWYRKSAT--------SG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp ------------HHHHTSSSCCCHHHHHHHHHHHHH--------TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ------------HHhcCCCCCcCHHHHHHHHHHHHH--------CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 2222 3455667777888876 22 34568888888776 78999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc-----CCHHHHHHHHHHHhh
Q 001064 381 LIACANYPEYWIRYVLCMEA----SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN-----GDIDGARAAYQLVHT 451 (1167)
Q Consensus 381 l~~~p~~~~~w~~ya~~l~~----~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~-----g~~~~A~~~~~~a~~ 451 (1167)
+.. .+++.++.++.++.. .++.++|+..|+++++. .++..++.++.++... +++++|+..|+++ .
T Consensus 250 ~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a-~ 323 (490)
T 2xm6_A 250 AEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS-A 323 (490)
T ss_dssp HTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH-H
T ss_pred HHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH-H
Confidence 876 678899999999888 88999999999999874 5788999999999888 8999999999998 4
Q ss_pred hcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Q 001064 452 ETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDS 525 (1167)
Q Consensus 452 ~~~P~~~~~~~~~a~~e~r~g---~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~~~Ar~i~~ka 525 (1167)
+. ++..+++.++.++.+.| ++++|+.+|+++++... +..+..++.++.. ..+++++|...|+++
T Consensus 324 ~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~--------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 324 EQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE--------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred hc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 43 56788888898888766 89999999999998731 6688888888543 158999999999999
Q ss_pred HhhcCCCHHHHHHHHHhHhh-CCChhHHHHHHHHHHHHhhcCC
Q 001064 526 LDHVQLSKPLLEALIHFESI-QSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 526 l~~~p~~~~l~~~~~~~e~~-~~~~~~~~~ar~l~eral~~~~ 567 (1167)
++.. +...+..+..+... .+...+.+.+...|++++...+
T Consensus 394 ~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9864 46666666665543 2333447889999999988763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-17 Score=174.94 Aligned_cols=197 Identities=13% Similarity=0.050 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
+...|..++..+...|++++|+..|++++..+|.++++|+.++.++...|++++|+..|++++++. |+++..|+.++.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred HHHc-----------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001064 433 KEQN-----------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 501 (1167)
Q Consensus 433 ~e~~-----------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~ 501 (1167)
+... |++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++++. .. +.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------~~~~ 154 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDA-ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT------PEIR 154 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC------HHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc------hHHH
Confidence 9999 9999999999998 78999999999999999999999999999999999987 32 6789
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHH
Q 001064 502 AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF 562 (1167)
Q Consensus 502 ~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~era 562 (1167)
..++.++.. .|++++|+..|+++++..|++..++..++.+....++ .+.+...|+++
T Consensus 155 ~~la~~~~~-~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLS-MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHH
Confidence 999999776 9999999999999999999999999988888877765 44566666655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-16 Score=167.51 Aligned_cols=130 Identities=9% Similarity=-0.043 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e 405 (1167)
+++++++..|++++. .++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|+++
T Consensus 119 ~~~~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 119 RNAEKELKKAEAEAY--------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp HHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHH--------cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHH
Confidence 334445555666665 566667778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLLEAIIKHA 465 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a 465 (1167)
+|...|++++... |+++.+|+.++.++...|++++|+..|+++ +++. |++..++..+.
T Consensus 191 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 191 EAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA-RTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhChhhcCCCchHHHHHHHH
Confidence 8888888888876 677888888888888888888888888887 5666 76666655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-16 Score=172.11 Aligned_cols=250 Identities=15% Similarity=0.087 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC-CHHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL-SFPLWDKYI 212 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~-s~~lw~~y~ 212 (1167)
+.++.++..+...|++++|+.+|++++...|.+..+|...+..+. ..|++++|+..|++++. .+.+.. ....|..++
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555554 45555555555555555 332222 133455555
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCc
Q 001064 213 EYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPD 292 (1167)
Q Consensus 213 ~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~ 292 (1167)
......++++.|...|+++++..+.+...++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------------------------------------------- 112 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYG------------------------------------------------- 112 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH-------------------------------------------------
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHH-------------------------------------------------
Confidence 5555555555555555555554333221111
Q ss_pred cccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHH-HHHHHcCChH
Q 001064 293 ATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYL-DFIERDGDFN 371 (1167)
Q Consensus 293 ~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~-~~~e~~g~~~ 371 (1167)
.+..+|...+++++|+..|+++++ ++|.....|..++ ..+ ..++++
T Consensus 113 ------------------------~l~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~-~~~~~~ 159 (272)
T 3u4t_A 113 ------------------------QIGSYFYNKGNFPLAIQYMEKQIR--------PTTTDPKVFYELGQAYY-YNKEYV 159 (272)
T ss_dssp ------------------------HHHHHHHHTTCHHHHHHHHGGGCC--------SSCCCHHHHHHHHHHHH-HTTCHH
T ss_pred ------------------------HHHHHHHHccCHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHHH-HHHHHH
Confidence 112244555666677777777776 5666677777777 444 345899
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhc--c-----ChHHHHHHHHHHHHcCCHHH
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGS---MDLAHNALARATHVFVK--R-----LPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~---~e~A~~vl~rA~~~~~p--~-----~~~l~~~~a~~~e~~g~~~~ 441 (1167)
+|+..|++++...|.+...|+.++.++...++ +++|...|++++++... . ...+|..++.++...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999988888887 78899999999887621 1 12577778888888888888
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 442 ARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
|+..|+++ ++++|++..++-....+.
T Consensus 240 A~~~~~~a-l~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNI-LALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHH-HHHCTTCHHHHHHHC---
T ss_pred HHHHHHHH-HhcCccHHHHHHHhhhhh
Confidence 88888887 677888887776665544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-16 Score=181.05 Aligned_cols=329 Identities=9% Similarity=-0.037 Sum_probs=205.6
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc------cC
Q 001064 95 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG------VT 164 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~------~P 164 (1167)
.....|+.++..+... +++++|+..|++++...|.+. .+|..++.++...|++++|+..|++++.. .|
T Consensus 7 ~~~~~l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455666777766653 677777777777777777763 56677777777777777777777777665 23
Q ss_pred CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHH
Q 001064 165 YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 244 (1167)
Q Consensus 165 ~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~ 244 (1167)
....+|...+.++. ..|++++|...|++++...+..... ...+ .++. ++..+|.
T Consensus 85 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~----------------~~~~-~~~~--------~l~~~~~ 138 (406)
T 3sf4_A 85 GEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDK----------------VGEA-RALY--------NLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCH----------------HHHH-HHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccc----------------cchH-HHHH--------HHHHHHH
Confidence 34555666666655 5566777777777666643221000 0000 0000 0000010
Q ss_pred HHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH
Q 001064 245 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 324 (1167)
Q Consensus 245 ~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~ 324 (1167)
....+.. .... .. +.. .. + ..
T Consensus 139 ~~g~~~~--------------------------~~~~-~~---------~~~-------~~---~-------------~a 159 (406)
T 3sf4_A 139 AKGKSFG--------------------------CPGP-QD---------VGE-------FP---E-------------EV 159 (406)
T ss_dssp HHHHTCC-------------------------------------------CC-------CC---H-------------HH
T ss_pred HcCCccc--------------------------cccc-ch---------hhh-------hh---h-------------hH
Confidence 0000000 0000 00 000 00 0 01
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH------HHHHHHHHH
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYVLCM 398 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~------~w~~ya~~l 398 (1167)
...+++|+..|++++.. +.-....+.....|..++..+...|++++|+..|++++..++...+ +|..++.++
T Consensus 160 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSL--VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 11244445555555431 0000123444567888899999999999999999999988665543 899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRL------PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHAN 466 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~------~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~ 466 (1167)
...|++++|...|++++.+. +.. ..++..++.++...|++++|...|+++ +++.+. ...++..++.
T Consensus 238 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHH-HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999987 433 568888999999999999999999997 444322 2567889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001064 467 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515 (1167)
Q Consensus 467 ~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 515 (1167)
++...|++++|+.+|++++++.+..........++..++.++.. .|+.
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 363 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV-LGLS 363 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH-hhHh
Confidence 99999999999999999999875432222234456666666544 5543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-16 Score=171.03 Aligned_cols=187 Identities=13% Similarity=0.102 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
..|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+..|++++++. |.++.+|+.++....
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 4467777777888999999999999999999999999999999999999999999999999986 889999999994555
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhCCCc--cCchHHHHHHHHHHHH
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN---LEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLH 509 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~---~e~A~~~~~kAl~~~~~~~~--~~~~~~l~~~~a~~~~ 509 (1167)
..+++++|+..|+++ +++.|++...|+.++.++..+|+ +++|+..|+++++....... ......++..++.++.
T Consensus 154 ~~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKV-LELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 567999999999998 78899999999999999999988 89999999999998732111 0112357788888876
Q ss_pred HHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 510 LVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 510 ~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
. .|++++|+.+|+++++.+|++...+.....+..
T Consensus 233 ~-~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 233 I-NRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp H-TTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred H-cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 6 999999999999999999999988876655543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=170.13 Aligned_cols=194 Identities=19% Similarity=0.148 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 396 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~ 396 (1167)
.+...+...+++++|+..|+++|+ ++|.+...|..++..+...|++++|+..|++++..+|.+.+.|+.++.
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALK--------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT--------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 345678889999999999999998 889999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 397 CMEAS-----------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 397 ~l~~~-----------g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
++... |++++|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ++++ ++..+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQA-LALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHH-Hhcc-cchHHHHHHH
Confidence 99999 99999999999999988 899999999999999999999999999998 7788 9999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
.++...|++++|+..|+++++..|+. +.++..++.++.. .|++++|+..|+++..+
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~ 214 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKD------LDLRVRYASALLL-KGKAEEAARAAALEHHH 214 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHTC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHH-ccCHHHHHHHHHHHhhc
Confidence 99999999999999999999998643 6788889988766 99999999999987643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-15 Score=165.83 Aligned_cols=239 Identities=11% Similarity=0.025 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-------HH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-------VD 168 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-------~~ 168 (1167)
..+.|..++..+... +++++|..+|++++..+ .+..+|..++.++...|++++|+++|++++...|.+ ..
T Consensus 4 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKA--RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 467899999999874 89999999999999999 899999999999999999999999999999998876 79
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 001064 169 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE 248 (1167)
Q Consensus 169 lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~ 248 (1167)
+|...+..+. ..+++++|+..|++++...+. .......+++++|...|++++...+.+...++.
T Consensus 81 ~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 144 (258)
T 3uq3_A 81 SFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT-----------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARL---- 144 (258)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH----
T ss_pred HHHHHHHHHH-HcccHHHHHHHHHHHHhcCch-----------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHH----
Confidence 9999999988 789999999999999996554 233445678999999999998876654433331
Q ss_pred HHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 001064 249 FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEF 328 (1167)
Q Consensus 249 ~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~ 328 (1167)
+..+|...+++
T Consensus 145 ---------------------------------------------------------------------~~~~~~~~~~~ 155 (258)
T 3uq3_A 145 ---------------------------------------------------------------------EGKEYFTKSDW 155 (258)
T ss_dssp ---------------------------------------------------------------------HHHHHHHTTCH
T ss_pred ---------------------------------------------------------------------HHHHHHHhcCH
Confidence 12345667788
Q ss_pred HHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 001064 329 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH 408 (1167)
Q Consensus 329 ~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~ 408 (1167)
++|+..|+++++ +++.+...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|.
T Consensus 156 ~~A~~~~~~a~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 156 PNAVKAYTEMIK--------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHh--------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 889999999998 677778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh-----ccChHHHHHHH
Q 001064 409 NALARATHVFV-----KRLPEIHLFAA 430 (1167)
Q Consensus 409 ~vl~rA~~~~~-----p~~~~l~~~~a 430 (1167)
..|++++++.+ |++..++..++
T Consensus 228 ~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 228 ETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 99999999873 44455554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-16 Score=167.79 Aligned_cols=210 Identities=12% Similarity=0.078 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
...+...+++++|+..|+++++ .++.....|..++..+...|++++|+..|++++...|.+..+|..++.++
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIE--------ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp ------------CCTTHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567788999999999999998 67778899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 478 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 478 (1167)
...|++++|+.+|++++... |++..+|..++.++...|++++|+.+|+++ +++.|++..+|..++.++.+.|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA-VELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999987 788999999999999999999999999998 7889999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 479 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 479 ~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.+|++++...+. .+.++..++.++.. .|++++|+.+|+++++..|++...+..+..+...
T Consensus 180 ~~~~~~~~~~~~------~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 180 SQFAAVTEQDPG------HADAFYNAGVTYAY-KENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHhCcc------cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999998753 26688889988776 9999999999999999999999988777666544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=179.87 Aligned_cols=293 Identities=10% Similarity=-0.024 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc------c
Q 001064 94 SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG------V 163 (1167)
Q Consensus 94 P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~------~ 163 (1167)
+.....+..++..+.. .+++++|+..|++++...|.+. .+|..++.++...|++++|+..|++++.. .
T Consensus 45 ~~~~~~l~~~g~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 45 SSMCLELALEGERLCN--AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 4445566677777766 3788888888888888888876 47888888888888888888888888876 3
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHH
Q 001064 164 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYF 243 (1167)
Q Consensus 164 P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~ 243 (1167)
+....+|..++.++. ..|++++|...|++++...... +. ++....
T Consensus 123 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~-----------------~~--------------~~~~~~--- 167 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQL-----------------GD--------------RLSEGR--- 167 (411)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH-----------------TC--------------HHHHHH---
T ss_pred hHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHh-----------------hc--------------hHHHHH---
Confidence 455566666666665 4566666666666666521100 00 000000
Q ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHH
Q 001064 244 SSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYK 323 (1167)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~ 323 (1167)
.+..+..+|.
T Consensus 168 ----------------------------------------------------------------------~~~~l~~~~~ 177 (411)
T 4a1s_A 168 ----------------------------------------------------------------------ALYNLGNVYH 177 (411)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 0001111222
Q ss_pred HHHH----------HHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc------CCC
Q 001064 324 KAKE----------FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC------ANY 387 (1167)
Q Consensus 324 ~~~~----------~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~------p~~ 387 (1167)
..++ +.++... +++|+..|++++... +..
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~-----------------------------------~~~A~~~~~~al~~~~~~~~~~~~ 222 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEA-----------------------------------LTRAVEFYQENLKLMRDLGDRGAQ 222 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCcccccccchhhhhhhhHH-----------------------------------HHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2232 2222222 445555566655542 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-----
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG----- 456 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~----- 456 (1167)
..+|..++.++...|++++|...|++++.+. +... .++..++.++...|++++|+..|+++ +++.+.
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~ 300 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIA-REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT-LALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH-HHHHHHcCCHH
Confidence 4588999999999999999999999999987 3332 37888999999999999999999998 454443
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 457 -LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 457 -~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
...+|..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+.+|++++++...
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA-IGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhh
Confidence 256789999999999999999999999999876432222334577888888776 99999999999999988764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=171.31 Aligned_cols=255 Identities=8% Similarity=0.018 Sum_probs=183.6
Q ss_pred CCCchHHHHHHHHHHhCCCC-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSD-FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 155 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d-~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l 155 (1167)
|.++.++..++++...+|.+ .++.+.+++.+..+ |+++.|+..++. ..|.+..++..++.++...++.++|++.
T Consensus 13 g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~--g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQ--RKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHT--TCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHC--CCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 78888888888888888887 56778888877764 688888877765 2555667777888888888889999999
Q ss_pred HHHHHhc--cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 156 YERAVQG--VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 156 ~eraL~~--~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
|++++.. +|.+..+|+..+..+. ..|++++|..+|++ | .+..+|...+..+..+|+++.|...|+++++
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ-----G---DSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT-----C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC-----C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998875 5888888888888888 67889999888887 2 3467888888888888888888888888876
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
..+.+.....
T Consensus 159 ~~p~~~~~~l---------------------------------------------------------------------- 168 (291)
T 3mkr_A 159 QDEDATLTQL---------------------------------------------------------------------- 168 (291)
T ss_dssp HCTTCHHHHH----------------------------------------------------------------------
T ss_pred hCcCcHHHHH----------------------------------------------------------------------
Confidence 5443210000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
...|+.+....|++++|+.+|++++..+|.++.+|..
T Consensus 169 -------------------------------------------~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~ 205 (291)
T 3mkr_A 169 -------------------------------------------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205 (291)
T ss_dssp -------------------------------------------HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred -------------------------------------------HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 0011111223456667777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhcCCChHHH
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG-ARAAYQLVHTETSPGLLEA 460 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~-A~~~~~~a~~~~~P~~~~~ 460 (1167)
++.++...|++++|...|++++.+. |+++.+|..++.++...|+.++ +..+++++ ++++|+++.+
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~-~~~~P~~~~~ 271 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL-KDAHRSHPFI 271 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCCCChHH
Confidence 7777777777777777777777766 6777777777777777777654 45666666 6667777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-16 Score=159.07 Aligned_cols=173 Identities=16% Similarity=0.132 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
..+|..++..+...|++++|+..|+++|..+|.+.++|+.++.++...|++++|...+.+++... ++...++...+.++
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
...++++.|...+.++ ..+.|++..+|..++.++.++|++++|+.+|+++++..|. .+.+|..+|.++.. .|
T Consensus 84 ~~~~~~~~a~~~~~~a-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~-~g 155 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRA-IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEG-KG 155 (184)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TT
T ss_pred HHcCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------hhhHHHHHHHHHHH-CC
Confidence 9999999999999998 7889999999999999999999999999999999999864 37789999999776 99
Q ss_pred CHHHHHHHHHHHHhhcCCCHHH
Q 001064 514 NAEKARQILVDSLDHVQLSKPL 535 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~p~~~~l 535 (1167)
++++|+..|++||+.+|++..+
T Consensus 156 ~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHhCCccCHHH
Confidence 9999999999999999976543
|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=178.47 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=73.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC--CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..++|||+|||+++|+++|+++|++|| .|++|+| ++++.+|++||||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i-~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKF-FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEE-EECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 458999999999999999999999999 9999876 66888999999999999999999999986 8999999999999
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
++++
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 8753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-15 Score=165.62 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e 405 (1167)
++.++++..|++.+.. ..+|.+...|..++..+...|++++|+.+|++ |.+.++|...+.++...|+.+
T Consensus 79 ~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 79 SRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp TTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH
Confidence 3445555666666541 13466677788888888899999999999988 888999999999999999999
Q ss_pred HHHHHHHHHHHhhhccChHHHHH--HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLF--AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~--~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
+|...|++++... |+.....+. +..+....|++++|+.+|+++ ++..|++..+|..++.++.++|++++|+.+|++
T Consensus 148 ~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 148 LARKELKKMQDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999887 666544443 345555568999999999998 677999999999999999999999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhhcCCCHHHHH
Q 001064 484 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK-ARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 484 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~-Ar~i~~kal~~~p~~~~l~~ 537 (1167)
++...|+ .+.++.+++.++.. .|+.++ +..+++++++..|+++.+.+
T Consensus 226 al~~~p~------~~~~l~~l~~~~~~-~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 226 ALDKDSG------HPETLINLVVLSQH-LGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHCTT------CHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhCCC------CHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999864 37788899988776 787754 68999999999999987763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-15 Score=175.32 Aligned_cols=315 Identities=12% Similarity=0.009 Sum_probs=216.1
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCCC----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSSD----FSAWTALLEETEKLAQDNIVKIRRVYDAFLAE------FPLCYGYWKKY 139 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~d----~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~------~P~~~~~W~~~ 139 (1167)
+..+...|++++++..|+++++.+|.+ ...|..++..+... +++++|...|++++.. .|....+|..+
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--HDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 344455589999999999999999999 46888999998874 8999999999999988 45557899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001064 140 ADHEARVGSMDKVVEVYERAVQGVTYS------VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 140 a~~e~~~~~~e~A~~l~eraL~~~P~s------~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~ 213 (1167)
+.++...|++++|+..|++++...+.. ..+|..++.++. ..|+...+.. . ...+..
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~--~---~~~~~~------------ 155 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPG--P---QDVGEF------------ 155 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHTCC------------CCC------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HcCCcccccc--c---chhhhh------------
Confidence 999999999999999999999987532 224444444443 2222000000 0 000000
Q ss_pred HHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCcc
Q 001064 214 YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDA 293 (1167)
Q Consensus 214 ~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~ 293 (1167)
+......++.|...|++++.+-....+
T Consensus 156 ~~~a~~~~~~A~~~~~~al~~~~~~~~----------------------------------------------------- 182 (406)
T 3sf4_A 156 PEEVRDALQAAVDFYEENLSLVTALGD----------------------------------------------------- 182 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccC-----------------------------------------------------
Confidence 001111255555555555432110000
Q ss_pred ccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHH
Q 001064 294 TEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 373 (1167)
Q Consensus 294 ~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a 373 (1167)
.......+..+..+|...+++++|+..|+++++.. .-.+........|..++..+...|++++|
T Consensus 183 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 183 --------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 00000122233456777888888888888888610 00001122234788888999999999999
Q ss_pred HHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHH
Q 001064 374 VKLYERCLIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGA 442 (1167)
Q Consensus 374 ~~~yeral~~~p~~------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A 442 (1167)
+..|++++...+.. ..+|..++.++...|++++|...|++++.+.... ...++..++.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999887655 6789999999999999999999999999986321 256888899999999999999
Q ss_pred HHHHHHHhhhc------CCChHHHHHHHHHHHHHcCCH
Q 001064 443 RAAYQLVHTET------SPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 443 ~~~~~~a~~~~------~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
+..|+++ +++ .+....++..++.++...|+.
T Consensus 327 ~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 327 MHFAEKH-LEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999997 443 233355677777777777655
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-15 Score=168.41 Aligned_cols=160 Identities=14% Similarity=-0.003 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCC
Q 001064 370 FNKVVKLYERCLIAC------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGD 438 (1167)
Q Consensus 370 ~~~a~~~yeral~~~------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~ 438 (1167)
+++|+..|++++... +....+|..++.++...|++++|...+++++.+.+.. ...++..++.++...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 344555555554431 2234578889999999999999999999999876321 12378888999999999
Q ss_pred HHHHHHHHHHHhhhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 439 IDGARAAYQLVHTETSPGL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 439 ~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+++|...|+++ +++.+.. ..++..++.++...|++++|+.+|++++...+..........++..++.++.. .
T Consensus 239 ~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~ 316 (338)
T 3ro2_A 239 FETASEYYKKT-LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA-L 316 (338)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHH-HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-c
Confidence 99999999997 4444333 56788899999999999999999999999876432222334567888888776 9
Q ss_pred CCHHHHHHHHHHHHhhcCC
Q 001064 513 RNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~~p~ 531 (1167)
|++++|+.+|+++++..+.
T Consensus 317 g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHC---
T ss_pred CChHHHHHHHHHHHHHHHh
Confidence 9999999999999987654
|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=161.98 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=76.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|..|.| +.++.+++++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5699999999999999999999999999999875 56777899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++.+
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87644
|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=153.80 Aligned_cols=84 Identities=20% Similarity=0.393 Sum_probs=76.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
...++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKI-VCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEE-EEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35799999999999999999999999999999876 56777899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987643
|
| >4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=147.20 Aligned_cols=81 Identities=20% Similarity=0.397 Sum_probs=76.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||+++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKL-IRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEe-eecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 36799999999999999999999999999999886 67888999999999999999999999976 99999999999999
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 986
|
| >1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-17 Score=167.21 Aligned_cols=120 Identities=16% Similarity=0.263 Sum_probs=99.2
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcc------------------------------------cch
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST------------------------------------ESA 761 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~------------------------------------~~~ 761 (1167)
..+|+..||++||+++|++|..|..||+++|.|+ |.++.. .-.
T Consensus 10 ~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS-~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l~ 88 (221)
T 1of5_A 10 LGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFS-VSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLS 88 (221)
T ss_dssp TCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EEECCC--------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEE-EEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhhc
Confidence 3579999999999999999999999999986554 555311 134
Q ss_pred hchHHHHHHHhcCCCcceeE------eeeeccccCC-CceEEEEEEEEEecCcc--------------------------
Q 001064 762 SSMLDIHSLVISLNFTAIEI------KTINSLGSWN-GGVLVMVSGSVKTKEFC-------------------------- 808 (1167)
Q Consensus 762 ~~~~~i~~~~~~l~~~~~~i------~~~d~q~~~~-~~i~v~v~G~~~~~~~~-------------------------- 808 (1167)
.|.++|.++|.+||.+++.| .+||||+... +||+|+|+|.++..+..
T Consensus 89 ~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (221)
T 1of5_A 89 IGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNST 168 (221)
T ss_dssp BHHHHHHHHHHHSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-----------------------------
T ss_pred cCHHHHHHHHHhCCCeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCccccccccccccccccccccccccccc
Confidence 57889999999999888888 5999999765 69999999999875432
Q ss_pred -----ccceeEEEEEEeeeCCeEEEEcceEEeccC
Q 001064 809 -----RRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 838 (1167)
Q Consensus 809 -----~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~ 838 (1167)
..+.|.|||+|.|.+++|+|.||+||+-..
T Consensus 169 ~~~~~~~rsF~RTFvL~P~~~~~~I~nD~l~ir~~ 203 (221)
T 1of5_A 169 SNNKLSKKSFDRTWVIVPMNNSVIIASDLLTVRAY 203 (221)
T ss_dssp CCSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccCCccceEEEEEEEecCCeEEEEeeEEEeecC
Confidence 579999999999998899999999998763
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=157.24 Aligned_cols=210 Identities=10% Similarity=-0.001 Sum_probs=190.8
Q ss_pred CChhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 349 LSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 349 ld~~~-~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
.+|.. ...|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++... |.+..+|+
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 56665 78899999999999999999999999999999999999999999999999999999999999987 78899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 505 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a 505 (1167)
.++.++...|++++|+.+|+++ +. ..|.+..+|..++.++...|++++|+.+|++++...+. .+.++..++
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la 182 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEA-SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------QPSVALEMA 182 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH-HhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------cHHHHHHHH
Confidence 9999999999999999999998 66 68999999999999999999999999999999998753 267888899
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 506 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 506 ~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.++.. .|++++|..+|+++++..|++...+..++.+....++ .+.+..++++++...+++.
T Consensus 183 ~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 183 DLLYK-EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTSH
T ss_pred HHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCCH
Confidence 98776 9999999999999999999999998888888877776 5668899999988877654
|
| >1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=171.78 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=101.2
Q ss_pred chhHhHHHHHHHHhhhcC-cccccccccCCceEEEEcCCcc------------------------------cchhchHHH
Q 001064 719 AQVGSYFVGQYYQVLQQQ-PDLVHQFYSDASSMIRVDGDST------------------------------ESASSMLDI 767 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~s~~~~~~g~~~------------------------------~~~~~~~~i 767 (1167)
.+||..||++||+++|++ |..|.++|+++|.| +|+++.. ....|.++|
T Consensus 15 ~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~f-S~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~~I 93 (250)
T 1jkg_B 15 KSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACC-SLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNV 93 (250)
T ss_dssp HHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEE-EEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHH
T ss_pred HHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEE-EEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHHHH
Confidence 479999999999999998 99999999998655 4564321 135678899
Q ss_pred HHHHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEecC---ccccceeEEEEEEeee-CCeEEEEcceEEeccC
Q 001064 768 HSLVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTKE---FCRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLDE 838 (1167)
Q Consensus 768 ~~~~~~l~~~~~~i~--~~d~q~~~~~~i~v~v~G~~~~~~---~~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~~~ 838 (1167)
.++|.+||.++|.+. ++||++..+++|+|+|+|.++..+ ..+.|.|+|||+|.|. +++|+|.||+||+.+.
T Consensus 94 ~~~l~~LP~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~~ 170 (250)
T 1jkg_B 94 VAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNA 170 (250)
T ss_dssp HHHHTTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEEC
T ss_pred HHHHHhCCCeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEECC
Confidence 999999998888776 899999888899999999999865 2378999999999997 5789999999998863
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-15 Score=159.13 Aligned_cols=207 Identities=8% Similarity=-0.020 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
....+...|...+++++|+..|+++++ +++.....|..++..+...|++++|+.+|++++...|.+..+|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALE--------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 344456678889999999999999998 667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 394 YVLCMEASGSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
++.++...|++++|+.+|++++. .. |....++..++.++...|++++|+.+|+++ +++.|++..+|+.++.++...
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKS-LRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999998 54 667889999999999999999999999998 788999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH
Q 001064 472 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 472 g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~ 537 (1167)
|++++|+.+|++++...+. .+..+..++.++.. .|++++|+.+|+++++..|++..++.
T Consensus 189 g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQ------NARSLLLGIRLAKV-FEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999998753 25677778888666 99999999999999999999987663
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=164.19 Aligned_cols=299 Identities=10% Similarity=-0.045 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------cCCC
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC----YGYWKKYADHEARVGSMDKVVEVYERAVQG------VTYS 166 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~----~~~W~~~a~~e~~~~~~e~A~~l~eraL~~------~P~s 166 (1167)
...|+..+..+.. .+++++|+..|++++...|.+ ..+|..++.++...|++++|+++|++++.. .+..
T Consensus 5 ~~~l~~~g~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCK--SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHH--hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 4567778888776 489999999999999999998 478889999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHH
Q 001064 167 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS---FPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYF 243 (1167)
Q Consensus 167 ~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s---~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~ 243 (1167)
..+|...+..+. ..|++++|...|++++...+..... ..++...+......++
T Consensus 83 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------- 138 (338)
T 3ro2_A 83 AKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK----------------------- 138 (338)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc-----------------------
Confidence 677888888887 6799999999999998865432111 1122222222222222
Q ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHH
Q 001064 244 SSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYK 323 (1167)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~ 323 (1167)
+........ . + . .. . .
T Consensus 139 -----~~~~~~~~~--------------------~-~-------~---------------~~--~--------------~ 154 (338)
T 3ro2_A 139 -----SFGCPGPQD--------------------T-G-------E---------------FP--E--------------D 154 (338)
T ss_dssp -----TSSSSSCC-----------------------------------------------CC--H--------------H
T ss_pred -----ccccchhhh--------------------h-h-------h---------------hh--h--------------h
Confidence 000000000 0 0 0 00 0 0
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH------HHHHHHHHH
Q 001064 324 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------EYWIRYVLC 397 (1167)
Q Consensus 324 ~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~------~~w~~ya~~ 397 (1167)
..+.+++++..|++++.. +.-....+.....|..++..+...|++++|+..|++++..++... .+|..++.+
T Consensus 155 a~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 155 VRNALQAAVDLYEENLSL--VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 001112222222222210 000001223345677777888888999999999999988754332 388899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHH
Q 001064 398 MEASGSMDLAHNALARATHVFVKRL------PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHA 465 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~p~~------~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a 465 (1167)
+...|++++|...|++++.+. +.. ..++..++.++...|++++|+..|+++ +++.+. ...+|..++
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la 310 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELKDRIGEGRACWSLG 310 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999999999877 333 567788899999999999999999987 444332 245788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.++.+.|++++|..+|++++.+.+
T Consensus 311 ~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-14 Score=150.99 Aligned_cols=209 Identities=12% Similarity=0.034 Sum_probs=186.4
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 429 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~ 429 (1167)
++.....|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|..+|++++... |.+..+|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999999987 7889999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 430 ARFKEQN-GDIDGARAAYQLVHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 430 a~~~e~~-g~~~~A~~~~~~a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
+.++... |++++|+.+|+++ ++ ..|.+..+|..++.++...|++++|+.+|++++...|. .+.++..++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~ 155 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKA-LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELAR 155 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH-HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHH
Confidence 9999999 9999999999998 56 56888899999999999999999999999999998764 2668888998
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhcC-CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 507 FLHLVSRNAEKARQILVDSLDHVQ-LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 507 ~~~~~~g~~~~Ar~i~~kal~~~p-~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
++.. .|++++|..+|+++++..| ++...+...+.+....+. .+.+..+++.++...++++
T Consensus 156 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 156 TKML-AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHH-HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCCCH
Confidence 8776 9999999999999999999 999888777777777666 4557777888777666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-15 Score=160.08 Aligned_cols=205 Identities=8% Similarity=-0.002 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|...+..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++... |....++..++.++
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 35577777777889999999999999999999999999999999999999999999999999987 78899999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
...|++++|+.+|+++ +++.|++..+|..++.++.+.|++++|+.+|++++...+. .+.++..++.++.. .|
T Consensus 102 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~~ 173 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKA-LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARFQFGMCLAN-EG 173 (243)
T ss_dssp HHTTCHHHHHHHHHHH-HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-HT
T ss_pred HHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHH-cC
Confidence 9999999999999998 7889999999999999999999999999999999998763 26688889988776 99
Q ss_pred CHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 514 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
++++|+.+|+++++..|++..+|..++.+....++ .+.+..+|++++...+++.
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcchH
Confidence 99999999999999999999999988888888776 4558899999999887664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-15 Score=164.18 Aligned_cols=157 Identities=10% Similarity=-0.051 Sum_probs=134.0
Q ss_pred ccccCCCCchHHHHHHHHHHh----CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 001064 72 ELVDGSAMSGEEDRLWNIVKA----NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 147 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~----nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~ 147 (1167)
.+...+++++++..|+++++. +|.+..+|+.++..+... +++++|...|++++..+|.+..+|..++.++...|
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 334447899999999999997 467889999999999874 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 001064 148 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMI 227 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~i 227 (1167)
++++|+++|++++...|.+..+|..++..+. ..|++++|+..|++++...+.+ .. +..+.......++++.|..+
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~---~~-~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDDPND---PF-RSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---HH-HHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCC---hH-HHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999998 6899999999999999976654 22 22222333556888899888
Q ss_pred HHHHHhcc
Q 001064 228 YTRILENP 235 (1167)
Q Consensus 228 y~r~l~~p 235 (1167)
|++++...
T Consensus 167 ~~~~~~~~ 174 (275)
T 1xnf_A 167 LKQHFEKS 174 (275)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88877653
|
| >1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-16 Score=161.84 Aligned_cols=120 Identities=16% Similarity=0.233 Sum_probs=97.2
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcc---------------c-----------------------
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST---------------E----------------------- 759 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~---------------~----------------------- 759 (1167)
..+|+..||++||+++|++|..|..||+++|.|+ +.++.. .
T Consensus 13 ~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS-~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~ 91 (219)
T 1q40_B 13 SRNLATNFIANYLKLWDANRSELMILYQNESQFS-MQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMA 91 (219)
T ss_dssp CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEE-EEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhccccEEE-EEecCCCCccccccccccccccchhhhhhhccchhcccchhhhhh
Confidence 3569999999999999999999999999987665 454211 0
Q ss_pred -chhchHHHHHHHhcCCCcceeE------eeeeccccC-CCceEEEEEEEEEecCc------------------------
Q 001064 760 -SASSMLDIHSLVISLNFTAIEI------KTINSLGSW-NGGVLVMVSGSVKTKEF------------------------ 807 (1167)
Q Consensus 760 -~~~~~~~i~~~~~~l~~~~~~i------~~~d~q~~~-~~~i~v~v~G~~~~~~~------------------------ 807 (1167)
-..|.++|.++|.+||.+++.| .+||||+.+ .+||+|+|+|.++..+.
T Consensus 92 ~l~~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (219)
T 1q40_B 92 KLSIGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGP 171 (219)
T ss_dssp TCEEHHHHHHHHHHTSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSSSSS
T ss_pred hhccCHHHHHHHHHHCCCeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccc
Confidence 3457889999999999888888 599999432 47899999999976432
Q ss_pred ------cccceeEEEEEEeee-CCeEEEEcceEEeccC
Q 001064 808 ------CRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLDE 838 (1167)
Q Consensus 808 ------~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~~~ 838 (1167)
...+.|+|||+|.|. +++|+|.||+|++-..
T Consensus 172 ~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~ 209 (219)
T 1q40_B 172 KHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPY 209 (219)
T ss_dssp CCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEEC
T ss_pred ccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecC
Confidence 268999999999999 5799999999998764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-14 Score=150.58 Aligned_cols=205 Identities=12% Similarity=0.048 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001064 316 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 395 (1167)
Q Consensus 316 ~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya 395 (1167)
..+...|...+++++|+..|+++++ +++.....|..++..+...|++++|+.+|++++..+|.+..+|..++
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALK--------SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3445678889999999999999998 67777889999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCHHHHHHHHHHHHH--hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001064 396 LCMEAS-GSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 472 (1167)
Q Consensus 396 ~~l~~~-g~~e~A~~vl~rA~~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 472 (1167)
.++... |++++|..+|++++. .. +....+|+.++.++...|++++|+..|+++ ++..|++..+|..++.++.+.|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTY-PTPYIANLNKGICSAKQGQFGLAEAYLKRS-LAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTC-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHcC
Confidence 999999 999999999999998 33 455789999999999999999999999998 7889999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhh-CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH
Q 001064 473 NLEDAFSLYEQAIAIEK-GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 473 ~~e~A~~~~~kAl~~~~-~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~ 537 (1167)
++++|+.+|++++...| .. +..+...+.++.. .|+.++|..+++.+++..|++..++.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQ------ADDLLLGWKIAKA-LGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999986 32 4556555555444 99999999999999999999987664
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-15 Score=175.30 Aligned_cols=214 Identities=14% Similarity=0.125 Sum_probs=163.6
Q ss_pred HHHHHHH---HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCHHHHH
Q 001064 320 EMYKKAK---EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD----GDFNKVVKLYERCLIACANYPEYWI 392 (1167)
Q Consensus 320 ~~y~~~~---~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~----g~~~~a~~~yeral~~~p~~~~~w~ 392 (1167)
.+|...+ ++.+++..|++++. .++.....|..++.++... +++++|+.+|+++. +.++..++
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~--------~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~ 252 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVS--------RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV 252 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH--------TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence 3455555 88889999999998 5666677778888887654 79999999999998 88999999
Q ss_pred HHHHH-H--HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 393 RYVLC-M--EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG-----DIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 393 ~ya~~-l--~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g-----~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
.++.+ + ...+++++|+..|+++++ ..++..++.++.++. .| ++++|+..|+++ . +++..+++.+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A-a---~g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRA---ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA-V---GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT-T---TTCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH-h---CCCHHHHHHH
Confidence 99997 4 457899999999999996 458899999999987 55 999999999998 3 8999999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhhcCCCHHHHH
Q 001064 465 ANMERR----LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 465 a~~e~r----~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~~~Ar~i~~kal~~~p~~~~l~~ 537 (1167)
+.++.. ..++++|+..|++|.+... +.....++.++.. +..|+++|...|++|.+.-... -..
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~ 394 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ--------NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--AND 394 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC--------TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHH
Confidence 988766 3499999999999998642 3366677776442 2348999999999999865433 233
Q ss_pred HHHHhHhhCCChhHHHHHHHHHHHHh
Q 001064 538 ALIHFESIQSSPKQIDFLEQLVDKFL 563 (1167)
Q Consensus 538 ~~~~~e~~~~~~~~~~~ar~l~eral 563 (1167)
.+..+...+ ++.++..++.+.++..
T Consensus 395 ~l~~l~~~~-~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 395 LATQLEAPL-TPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 333343333 3444555555555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.5e-15 Score=176.72 Aligned_cols=206 Identities=12% Similarity=0.023 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF-NKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 404 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~-~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~ 404 (1167)
+++++++..+++.+. .++.....|..++..+...|++ ++|+.+|++++..+|.+.++|+.++.++...|++
T Consensus 82 ~~~~~al~~l~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 82 EEMEKTLQQMEEVLG--------SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHHT--------TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhc--------cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 445666777777766 5667788999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc----
Q 001064 405 DLAHNALARATHVFVKRLPEIHLFAARFKEQN---------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---- 471 (1167)
Q Consensus 405 e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~---------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---- 471 (1167)
++|+..|++++++. |+ ..+|..++.++... |++++|+..|+++ ++++|++..+|..++.++..+
T Consensus 154 ~~A~~~~~~al~~~-p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 154 TSAHTCFSGALTHC-KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA-VQMDVLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHTTC-CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC-CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999987 66 69999999999999 9999999999998 789999999999999999999
Q ss_pred ----CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhC
Q 001064 472 ----GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 546 (1167)
Q Consensus 472 ----g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~ 546 (1167)
|++++|+.+|++++.+.|. ....+.+|..++.++.. .|++++|+..|++++++.|++...|..+..+....
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999862 01347899999999877 99999999999999999999998887776665543
|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=139.49 Aligned_cols=84 Identities=19% Similarity=0.408 Sum_probs=77.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+.++..|+|+.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM-IYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEE-CCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35699999999999999999999999999999875 56777899999999999999999999998999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-13 Score=173.23 Aligned_cols=367 Identities=11% Similarity=0.083 Sum_probs=211.7
Q ss_pred ccccCCCCchHHHHHHHHHHhCCC----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSS----DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 147 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~----d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~ 147 (1167)
.++.+|.+.++++.|++++. +|. +.+.-..|++..-+. ++.+...+.+++= +.. ....|.++...|
T Consensus 994 af~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd-----~~d-~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLD-----NYD-APDIANIAISNE 1063 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhh-----hcc-HHHHHHHHHhCC
Confidence 33344777777777777773 333 223323344444332 2333332222221 111 334667777777
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 001064 148 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMI 227 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~i 227 (1167)
.+++|..+|+++-. +...+..+++..+++++|.++++|+- ...+|..|++..+..|++++|+..
T Consensus 1064 lyEEAf~IYkKa~~--------~~~A~~VLie~i~nldrAiE~Aervn--------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV--------NTSAVQVLIEHIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CHHHHHHHHHHcCC--------HHHHHHHHHHHHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777631 11112222223456666666666542 356777777777777777777777
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcch
Q 001064 228 YTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTE 307 (1167)
Q Consensus 228 y~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~ 307 (1167)
|.++ .+.+.+++....+..... .+++.. ++....+... + ...+
T Consensus 1128 YiKA-----dD~say~eVa~~~~~lGk------yEEAIe----yL~mArk~~~-------e---------------~~Id 1170 (1630)
T 1xi4_A 1128 YIKA-----DDPSSYMEVVQAANTSGN------WEELVK----YLQMARKKAR-------E---------------SYVE 1170 (1630)
T ss_pred HHhc-----CChHHHHHHHHHHHHcCC------HHHHHH----HHHHHHhhcc-------c---------------cccc
Confidence 7665 334444443333322221 122211 0100000000 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 001064 308 AEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY 387 (1167)
Q Consensus 308 ~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~ 387 (1167)
.+ ....|.+.++++. ++..|+ ..+...|...++.++..|+++.|..+|.+|
T Consensus 1171 t~--------LafaYAKl~rlee----le~fI~----------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1171 TE--------LIFALAKTNRLAE----LEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HH--------HHHHHHhhcCHHH----HHHHHh----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 00 1123333444332 333332 112456778888888889999999999886
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
..|.+++..+.+.|++++|.+++++| ++...|..........|++..|+.+...+ ..+|+. +...+.+
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~de---Leeli~y 1289 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADE---LEELINY 1289 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHH---HHHHHHH
Confidence 47888888888888899998888887 34578888888787888888888876642 234443 3466777
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhcC-----CCHHHHHHHHH
Q 001064 468 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL-VSRNAEKARQILVDSLDHVQ-----LSKPLLEALIH 541 (1167)
Q Consensus 468 e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~-~~g~~~~Ar~i~~kal~~~p-----~~~~l~~~~~~ 541 (1167)
+.+.|.+++|+.+|+++|.+++. +..+|-.++.++.+ .-+++.++.++|...+...+ .+..+|..++.
T Consensus 1290 Ye~~G~feEAI~LlE~aL~Lera------H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGLERA------HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhccChh------HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence 78889999999999999888742 23344333333222 15577888888888887766 66788887777
Q ss_pred hHhhCCC
Q 001064 542 FESIQSS 548 (1167)
Q Consensus 542 ~e~~~~~ 548 (1167)
+-...++
T Consensus 1364 LY~~~~e 1370 (1630)
T 1xi4_A 1364 LYDKYEE 1370 (1630)
T ss_pred HHHhccc
Confidence 7666555
|
| >2lxi_A RNA-binding protein 10; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-16 Score=140.76 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=74.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g~~l~V~~~ 1108 (1167)
++|||+|||+++|+++|+++|++|| .|++|+| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i-~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRL-MRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCS-SSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEE-EecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 6899999999999999999999999 8999875 67888999999999999999999999986 467899999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
++++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=140.90 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=75.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1106 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~ 1106 (1167)
.+.+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+++++|||||+|.+.++|.+||...+..|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV-ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-SCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 3456799999999999999999999999999999875 567778999999999999999999999884339999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
++++..
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-12 Score=166.38 Aligned_cols=399 Identities=9% Similarity=-0.041 Sum_probs=257.6
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL----CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV 167 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~----~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~ 167 (1167)
.+|+.+ ...++.+.. .|...++..+||+++ ..|. +..+-..++...++. +..+..+...+.=.. +
T Consensus 983 ~~PeeV---s~~vKaf~~--aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d-- 1051 (1630)
T 1xi4_A 983 QDPEEV---SVTVKAFMT--ADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D-- 1051 (1630)
T ss_pred cCHHHh---HHHHHHHHh--CCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c--
Confidence 445544 345555554 489999999999999 4444 444444466666665 445555555443321 1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 001064 168 DIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFK 247 (1167)
Q Consensus 168 ~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~ 247 (1167)
.-..+..+. ..|.+++|..+|+++-. . ......| ....++|++|..+++|+ .....|++..+
T Consensus 1052 --~~eIA~Iai-~lglyEEAf~IYkKa~~----~---~~A~~VL---ie~i~nldrAiE~Aerv-----n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1052 --APDIANIAI-SNELFEEAFAIFRKFDV----N---TSAVQVL---IEHIGNLDRAYEFAERC-----NEPAVWSQLAK 1113 (1630)
T ss_pred --HHHHHHHHH-hCCCHHHHHHHHHHcCC----H---HHHHHHH---HHHHhhHHHHHHHHHhc-----CCHHHHHHHHH
Confidence 222445555 67999999999999742 1 1222223 33678899999999987 33344554444
Q ss_pred HHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 001064 248 EFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKE 327 (1167)
Q Consensus 248 ~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~ 327 (1167)
.+..... .++++. .|... .+.+. |+. ....+.+.++
T Consensus 1114 Aql~~G~------~kEAId----sYiKA------------------------------dD~sa---y~e-Va~~~~~lGk 1149 (1630)
T 1xi4_A 1114 AQLQKGM------VKEAID----SYIKA------------------------------DDPSS---YME-VVQAANTSGN 1149 (1630)
T ss_pred HHHhCCC------HHHHHH----HHHhc------------------------------CChHH---HHH-HHHHHHHcCC
Confidence 4433221 222221 11110 11112 222 2456788899
Q ss_pred HHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 001064 328 FDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL 406 (1167)
Q Consensus 328 ~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~ 406 (1167)
+++++..|..+++ .++. .++.+ ++..+.+.++++. +..| +. ..+..-|...|..++..|++++
T Consensus 1150 yEEAIeyL~mArk--------~~~e~~Idt~--LafaYAKl~rlee-le~f---I~--~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1150 WEELVKYLQMARK--------KARESYVETE--LIFALAKTNRLAE-LEEF---IN--GPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHHHHHHHHHHHh--------hcccccccHH--HHHHHHhhcCHHH-HHHH---Hh--CCCHHHHHHHHHHHHhcCCHHH
Confidence 9999999998886 2221 23333 4555556666663 3333 32 2344667789999999999999
Q ss_pred HHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 407 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 486 (1167)
Q Consensus 407 A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~ 486 (1167)
|...|.+| ..|..++..+.+.|++++|.++++++ ++..+|..........|++..|+.+... +.
T Consensus 1214 A~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii 1277 (1630)
T 1xi4_A 1214 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV 1277 (1630)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh
Confidence 99999886 36788899999999999999999987 3568899888888888999999888764 43
Q ss_pred hhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcC
Q 001064 487 IEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~ 566 (1167)
.. +..+..++.++.. .|.+++|..+|+++|.+++.+..+|..+..+..... ++++-...++|...+..
T Consensus 1278 v~---------~deLeeli~yYe~-~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~-peklmEhlk~f~~rini- 1345 (1630)
T 1xi4_A 1278 VH---------ADELEELINYYQD-RGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNI- 1345 (1630)
T ss_pred cC---------HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC-HHHHHHHHHHHHHhccc-
Confidence 33 4455567777555 999999999999999999988889987777776653 44443333344433332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHH-HHHHHHHhhhC
Q 001064 567 SDSPSTANAAEREELSCVFLEFLGLFGDAQLIK-KAEDRHARLFL 610 (1167)
Q Consensus 567 ~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~-~v~~r~~~~~~ 610 (1167)
+-+++.-....+|..+.....++|+.+.+. .|-++....|.
T Consensus 1346 ---~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~ 1387 (1630)
T 1xi4_A 1346 ---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 1387 (1630)
T ss_pred ---chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh
Confidence 112344455678999999999999877555 33333344443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-14 Score=170.89 Aligned_cols=224 Identities=9% Similarity=0.001 Sum_probs=170.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM-DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~-e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
+.++++...+++.+...|.+..+|..++..+...+++ ++|++.|+++|+..|.+.++|..++..+. ..|++++|+..|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 4577888899999999999999999999999999999 99999999999999999999999999999 689999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHH
Q 001064 192 ERGLAYVGTDYLSFPLWDKYIEYEYMQ---------QEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 262 (1167)
Q Consensus 192 eral~~~g~d~~s~~lw~~y~~~e~~~---------~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 262 (1167)
++++...|. ...|..++..+... +++++|...|++++++.+.+...++.....
T Consensus 161 ~~al~~~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-------------- 222 (474)
T 4abn_A 161 SGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA-------------- 222 (474)
T ss_dssp HHHHTTCCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--------------
T ss_pred HHHHhhCCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------------
Confidence 999995543 58899999999988 999999999999999877766555422211
Q ss_pred HHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001064 263 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 342 (1167)
Q Consensus 263 e~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~ 342 (1167)
|... .|...
T Consensus 223 -----------------------------------------------------------~~~~--------~~~~~---- 231 (474)
T 4abn_A 223 -----------------------------------------------------------YLSL--------YFNTG---- 231 (474)
T ss_dssp -----------------------------------------------------------HHHH--------HHHTT----
T ss_pred -----------------------------------------------------------HHHH--------HHhhc----
Confidence 1111 01000
Q ss_pred CcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 343 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA---NYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 419 (1167)
Q Consensus 343 ~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p---~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~ 419 (1167)
...|++++|+..|++++..+| .++.+|+.++.++...|++++|+..|++++++.
T Consensus 232 ----------------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 288 (474)
T 4abn_A 232 ----------------------QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD- 288 (474)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ----------------------cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 011345566666666666666 666666666666666666667777776666665
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
|+++.+|..++.++...|++++|...+.++
T Consensus 289 p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566666666666666666666666666553
|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=137.32 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=76.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceee-eEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPD-GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++|||+|||.++++++|+++|++||.|..+ .| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI-MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEE-CCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-EEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46999999999999999999999999999998 75 56778899999999999999999999995 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987643
|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=137.68 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=76.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHY-PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-EecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5699999999999999999999999999999875 55677899999999999999999999965 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 88654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-14 Score=146.02 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 396 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~ 396 (1167)
.++.+|...+++++|+..|+++|+ ++|.+...|..++..+...|++++++..+++++...+.+..+|..++.
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLK--------ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 346789999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 476 (1167)
++...++++.|...+.+++.+. |++..+|..++.++...|++++|+..|+++ ++++|++..+|+.++.++.++|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKT-ISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHH-HHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999987 889999999999999999999999999998 78999999999999999999999999
Q ss_pred HHHHHHHHHHhhhC
Q 001064 477 AFSLYEQAIAIEKG 490 (1167)
Q Consensus 477 A~~~~~kAl~~~~~ 490 (1167)
|+..|++||+.+|+
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999999863
|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=141.07 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=75.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||+++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|++||+. ||..|+|+.|+|+++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i-~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEI-LLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999999999999999999999999986 66888999999999999999999999986 999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+..
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=175.72 Aligned_cols=84 Identities=24% Similarity=0.398 Sum_probs=76.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||+.+|+++|+++|++||.|+.|.| +.++.+|+++|||||+|.+.++|.+||.. ||+.|+|+.|.|+++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHM-VYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEe-eccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4689999999999999999999999999999876 56777899999999999999999999976 899999999999999
Q ss_pred cCCCCC
Q 001064 1109 RPNTGS 1114 (1167)
Q Consensus 1109 r~~~~~ 1114 (1167)
+++...
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 876543
|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=136.34 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=76.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVL-MKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-ECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4599999999999999999999999999999875 56777899999999999999999999985 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87643
|
| >1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-15 Score=142.95 Aligned_cols=84 Identities=18% Similarity=0.346 Sum_probs=77.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVV-MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEE-ECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 35699999999999999999999999999999875 56778899999999999999999999998999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=180.53 Aligned_cols=174 Identities=15% Similarity=0.256 Sum_probs=160.9
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
..|++.+.|..++..+.+.|++++|+..|+++|..+|.+.++|..++.++...|++++|+..|++|+++. |++..+|+.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
++.++...|++++|+..|+++ ++++|++..+|..++.++..+|++++|+..|++||++.|+ .+.++..++.++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kA-l~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~------~~~a~~~L~~~l 155 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRA-IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD------FPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHhhhhhHH
Confidence 999999999999999999998 7899999999999999999999999999999999999864 377899999987
Q ss_pred HHHhCCHHHHHHHHHHHHhhcCC
Q 001064 509 HLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
.. .|++++|.+.|++++++.|+
T Consensus 156 ~~-~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QI-VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HH-TTCCTTHHHHHHHHHHHHHH
T ss_pred Hh-cccHHHHHHHHHHHHHhChh
Confidence 76 99999999999999987654
|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.7e-15 Score=139.22 Aligned_cols=84 Identities=19% Similarity=0.434 Sum_probs=76.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKV-FIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEE-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999876 56777899999999999999999999966 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.9e-14 Score=149.33 Aligned_cols=180 Identities=11% Similarity=0.015 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACA-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p-~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
...|...+..+...|++++|+..|++++..+| .+..+|+.++.++...|++++|+..|++++... |++..+|+.++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 37899999999999999999999999999998 899999999999999999999999999999987 8899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc--hHHHHHH
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLL-------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT--LPMLYAQ 503 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~-------~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~--~~~l~~~ 503 (1167)
+...|++++|+..|+++ ++++|++. .+|+..+.++...|++++|+.+|+++++..| . .+.+|..
T Consensus 86 ~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~~ 158 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEG-IKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS------KKWKTDALYS 158 (228)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC------HHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC------CcccHHHHHH
Confidence 99999999999999998 78899988 6699999999999999999999999999874 3 4667888
Q ss_pred HHHHHHHHhCCH---------------------------HHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 504 YSRFLHLVSRNA---------------------------EKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 504 ~a~~~~~~~g~~---------------------------~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
++.+++. .|+. ++|+..|++++++.|++..++..+..+
T Consensus 159 l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYN-NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8877654 5544 666666666666666666655544443
|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-15 Score=139.78 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=73.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.| +.++ +|+++|||||+|.+.++|.+||+. +|..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLL-IKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEE-ECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 5699999999999999999999999999999875 4455 899999999999999999999986 899999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8653
|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-15 Score=136.80 Aligned_cols=83 Identities=19% Similarity=0.351 Sum_probs=75.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++++++|+++|++|| |.+|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRL-VRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEE-eecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 3569999999999999999999999997 999875 56778899999999999999999999966999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87543
|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-15 Score=137.17 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=76.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35699999999999999999999999999999875 56777899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987644
|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=137.15 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=77.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYL-AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 346799999999999999999999999999999875 56777899999999999999999999985 8999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987644
|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=144.82 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=76.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||.++|+++|+++|++||.|.+|.| +.++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35799999999999999999999999999999875 55777899999999999999999999975 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-14 Score=162.97 Aligned_cols=283 Identities=12% Similarity=0.014 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------cCCCHH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIA------CANYPE 389 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~-~~~W~~y~~~~e~~g~~~~a~~~yeral~~------~p~~~~ 389 (1167)
.....+...+++++|+..|+++++. .|.++.. ...|..++..+...|++++|+.+|++++.. .+....
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4566788899999999999999982 2333322 257888899999999999999999999987 466667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----hccChHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVF-----VKRLPEIHLFAARFKEQNGD-----------------IDGARAAYQ 447 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~-----~p~~~~l~~~~a~~~e~~g~-----------------~~~A~~~~~ 447 (1167)
+|..++.++...|++++|...|++++.+. .+....++..++.++...|+ +++|+..|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999985 24556788899999999999 999999999
Q ss_pred HHhhhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 448 LVHTET------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 521 (1167)
Q Consensus 448 ~a~~~~------~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i 521 (1167)
++ +++ .+....+|..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+.+
T Consensus 208 ~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~ 285 (411)
T 4a1s_A 208 EN-LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF-LGQFEDAAEH 285 (411)
T ss_dssp HH-HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred HH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-CcCHHHHHHH
Confidence 87 333 233456789999999999999999999999999886432222223467788888766 9999999999
Q ss_pred HHHHHhhcCCC------HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCH
Q 001064 522 LVDSLDHVQLS------KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDA 595 (1167)
Q Consensus 522 ~~kal~~~p~~------~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~ 595 (1167)
|+++++..+.. ..++..++.+....++ .+.+..+|++++....... .......++..........|+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQELG---DRIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHhccH
Confidence 99999987643 4556667777766666 5667888888876533221 1234456777888888899999
Q ss_pred HHHHHHHHHHHhhhCCC
Q 001064 596 QLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 596 ~~~~~v~~r~~~~~~~~ 612 (1167)
+.+.+.+++..+++...
T Consensus 360 ~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 360 ERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998753
|
| >2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-15 Score=139.29 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=77.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVI-MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEE-EECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 446799999999999999999999999999999876 6677889999999999999999999998899999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 887643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-13 Score=147.64 Aligned_cols=227 Identities=10% Similarity=-0.009 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCC-ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPL-SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS 403 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pl-d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~ 403 (1167)
.+++++|+..|+++++. .+. ++.....|..++..+...|++++|+..|++++...|.+..+|..++.++...|+
T Consensus 18 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 18 TLQQEVILARMEQILAS-----RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CHHHHHHHHHHHHHHTS-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHhc-----ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 46778888899999873 112 356788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 404 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 404 ~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
+++|+..|++++.+. |.+..+|+.++.++...|++++|+.+|+++ +++.|++...+.... +....|++++|+.+|++
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF-YQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence 999999999999987 788999999999999999999999999998 788999886555444 44667999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC----HHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001064 484 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS----KPLLEALIHFESIQSSPKQIDFLEQLV 559 (1167)
Q Consensus 484 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~----~~l~~~~~~~e~~~~~~~~~~~ar~l~ 559 (1167)
++...+.. ...+ .++.+... .++.++|...++++++..|.. ..+|..++.+....++ .+.+..+|
T Consensus 170 ~~~~~~~~------~~~~-~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~ 238 (275)
T 1xnf_A 170 HFEKSDKE------QWGW-NIVEFYLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALF 238 (275)
T ss_dssp HHHHSCCC------STHH-HHHHHHTT-SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHhcCCcc------hHHH-HHHHHHHH-hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 99987643 1133 24444444 778899999999999877643 5677777777777766 66789999
Q ss_pred HHHhhcCCCCC
Q 001064 560 DKFLMSNSDSP 570 (1167)
Q Consensus 560 eral~~~~~~~ 570 (1167)
++++...|++.
T Consensus 239 ~~al~~~p~~~ 249 (275)
T 1xnf_A 239 KLAVANNVHNF 249 (275)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHHhCCchhH
Confidence 99999876554
|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=136.25 Aligned_cols=85 Identities=28% Similarity=0.363 Sum_probs=77.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV-VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346799999999999999999999999999999876 56777899999999999999999999986 8999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987654
|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-15 Score=136.56 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=76.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5799999999999999999999999999999875 56777899999999999999999999976 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=136.04 Aligned_cols=83 Identities=19% Similarity=0.325 Sum_probs=74.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCC-cccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD-VVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++|| |.+|.| ++++.+ |+++|||||+|.+.++|.+||..++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEEC-CBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEE-ecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 3569999999999999999999999999 999875 556666 8999999999999999999995589999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-13 Score=157.20 Aligned_cols=349 Identities=10% Similarity=-0.012 Sum_probs=220.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM---DKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~---e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
.|+..+.+ .+++++|.++|+++++. .+..+++.++.++...|+. ++|+..|++++.. +++.++.++.++.
T Consensus 8 ~la~~~~~--~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALK--RGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 45665554 47999999999999876 4667888899998888887 8999999999976 6677888888554
Q ss_pred hhc----CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHH---HHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001064 179 NTY----GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRV---AMIYTRILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 179 ~~~----~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A---~~iy~r~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
... +++++|...|++++... +. ..+..++.+....+....+ ...|.++... .+....+..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g--~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~L------ 147 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG--EG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQ------ 147 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT--CS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHH------
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC--CH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHH------
Confidence 222 36789999999999832 21 2344444444443332222 2222222111 011111111
Q ss_pred cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH----H
Q 001064 252 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK----E 327 (1167)
Q Consensus 252 ~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~----~ 327 (1167)
..+|...+ .
T Consensus 148 -------------------------------------------------------------------g~~y~~~~~~~~~ 160 (452)
T 3e4b_A 148 -------------------------------------------------------------------VLLYRTQGTYDQH 160 (452)
T ss_dssp -------------------------------------------------------------------HHHHHHHTCGGGG
T ss_pred -------------------------------------------------------------------HHHHHcCCCcccC
Confidence 11222222 1
Q ss_pred HHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---
Q 001064 328 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG---DFNKVVKLYERCLIACANYPEYWIRYVLCMEAS--- 401 (1167)
Q Consensus 328 ~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g---~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~--- 401 (1167)
...+...++.+.. .++ ..+..++.++...| ++++|+.+|++++...+.....|+.++.++...
T Consensus 161 ~~~a~~~~~~a~~--------~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 161 LDDVERICKAALN--------TTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHHHHHHHHHHTT--------TCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGS
T ss_pred HHHHHHHHHHHHc--------CCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 1222333444443 333 37888888888888 899999999999999999999999999988654
Q ss_pred -CCHHHHHHHHHHHHHhhhccChHHHHHHHHH-H--HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-----
Q 001064 402 -GSMDLAHNALARATHVFVKRLPEIHLFAARF-K--EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG----- 472 (1167)
Q Consensus 402 -g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~-~--e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g----- 472 (1167)
++.++|+..|+++. +.++..++.++.+ + ...+++++|+..|+++ . ..++..+++.++.++. .|
T Consensus 230 ~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A-a--~~g~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNG-R--AADQPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH-H--HTTCHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-H--HCCCHHHHHHHHHHHH-cCCCCCC
Confidence 68999999999987 6789999999987 4 4589999999999998 3 4568889999998887 56
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 473 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 473 ~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
++++|+..|++|+ ++. +..+..++.++..- ..++++|+.+|+++.+.......+....+.. ...+.+
T Consensus 302 d~~~A~~~~~~Aa---~g~------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~ 371 (452)
T 3e4b_A 302 DAKAAEAHFEKAV---GRE------VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS-QGKGTK 371 (452)
T ss_dssp CHHHHHHHHHTTT---TTC------HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH-SCTTBC
T ss_pred CHHHHHHHHHHHh---CCC------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH-hCCCCC
Confidence 9999999999999 321 66778888774321 2299999999999998654444444333322 333444
Q ss_pred hHHHHHHHHHHHHhhcC
Q 001064 550 KQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 550 ~~~~~ar~l~eral~~~ 566 (1167)
.+.+.+..+|.++....
T Consensus 372 ~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 45677888999988754
|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-15 Score=136.93 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=76.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYI-PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEC-CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35699999999999999999999999999999875 56777899999999999999999999985 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++.+
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987543
|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-15 Score=135.60 Aligned_cols=80 Identities=10% Similarity=0.313 Sum_probs=71.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCC--ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCC----eeeCcE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGR--IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPI----QLAGRQ 1102 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~----~i~g~~ 1102 (1167)
.-.+|||+|||+++|+++|+++|++||. |.+|++ ++|+.+|++||||||+|.+.++|.+||+. +|. .|+||.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i-~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRL-IKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEEC-CCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEE-EecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4589999999999999999999999996 566654 67888999999999999999999999987 554 699999
Q ss_pred eEEEeccC
Q 001064 1103 VYIEERRP 1110 (1167)
Q Consensus 1103 l~V~~~r~ 1110 (1167)
|+|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=135.78 Aligned_cols=83 Identities=23% Similarity=0.442 Sum_probs=75.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+++++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV-VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEE-CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5699999999999999999999999999999875 56777889999999999999999999966 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=143.82 Aligned_cols=128 Identities=5% Similarity=-0.036 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhccCCCHH
Q 001064 93 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEVYERAVQGVTYSVD 168 (1167)
Q Consensus 93 nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l~eraL~~~P~s~~ 168 (1167)
+|.+.++|+.|+..+... +++++|...|+++++ |.+...|..++.++.. .+++++|+..|++++... +..
T Consensus 2 ~~~~~~a~~~lg~~~~~~--~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKE--KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH
Confidence 577788888888887763 688888888888888 6777888888888888 888888888888888763 777
Q ss_pred HHHHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHH
Q 001064 169 IWLHYCIFAINT----YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIYTRIL 232 (1167)
Q Consensus 169 lw~~ya~~~~~~----~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~----~~~~~~A~~iy~r~l 232 (1167)
.|..++.++. . .+++++|+..|++++.. + ....|..++.+... .+++++|...|++++
T Consensus 76 a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~---~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 GCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL---K--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT---T--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc---C--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 8888877777 5 67778888888877763 1 23444444444444 444444444444443
|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=136.81 Aligned_cols=85 Identities=27% Similarity=0.332 Sum_probs=77.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C------CCeeeC
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S------PIQLAG 1100 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~------~~~i~g 1100 (1167)
..+.++|||+|||+++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. + +..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV-VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 346799999999999999999999999999999875 56777899999999999999999999986 7 999999
Q ss_pred cEeEEEeccCCCC
Q 001064 1101 RQVYIEERRPNTG 1113 (1167)
Q Consensus 1101 ~~l~V~~~r~~~~ 1113 (1167)
+.|+|++++++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987643
|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=137.15 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=76.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCce--------eeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--------PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1098 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i 1098 (1167)
+.+.++|||+|||.++|+++|+++|++||.|. .|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHI-YLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEEC-CBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEE-EEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 44679999999999999999999999999998 5765 55778899999999999999999999986 99999
Q ss_pred eCcEeEEEeccCCCC
Q 001064 1099 AGRQVYIEERRPNTG 1113 (1167)
Q Consensus 1099 ~g~~l~V~~~r~~~~ 1113 (1167)
+|+.|+|++++++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987643
|
| >3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.3e-15 Score=131.73 Aligned_cols=80 Identities=16% Similarity=0.329 Sum_probs=73.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||+++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI-KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-eecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 346799999999999999999999999999999875 5677789999999999999999999998899999999999986
Q ss_pred c
Q 001064 1108 R 1108 (1167)
Q Consensus 1108 ~ 1108 (1167)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=133.87 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=71.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++|+++|+++|++||.|..|.|. .+++++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK----NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEC----CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3457999999999999999999999999999997652 2345899999999999999999965 8999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998753
|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-15 Score=136.61 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=70.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++||.| +|.| +.++ +|+++|||||+|.+.++|++||+.++..|+||.|+|..+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHI-EIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEE-EESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEE-EECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 46899999999999999999999999954 7765 4455 8999999999999999999999879999999999999877
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=135.21 Aligned_cols=84 Identities=14% Similarity=0.304 Sum_probs=75.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee---eCcEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL---AGRQV 1103 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i---~g~~l 1103 (1167)
+.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. ++..+ +|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTV-LKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEEC-CCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345799999999999999999999999999999875 56777899999999999999999999986 88887 89999
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
+|++++++.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998754
|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=130.58 Aligned_cols=81 Identities=30% Similarity=0.374 Sum_probs=73.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARV-VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4689999999999999999999999999999875 56777899999999999999999999986 899999999999999
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
|
| >2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=133.14 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=75.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||. +++.|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEE-EecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 345689999999999999999999999999999875 5677789999999999999999999999 57899999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987643
|
| >2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=137.09 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=75.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.++++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEE-EECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 35799999999999999999999999999999875 56777899999999999999999999999889999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87643
|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=134.51 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=76.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeec-CCCcccccEEEEEECCHHHHHHHHHh--CCCeeeCcEeE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN-RKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVY 1104 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g~~l~ 1104 (1167)
+.+.++|||+|||.++++++|+++|++||.|..|.| +++ +.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRL-PKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEE-ecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 346799999999999999999999999999999875 455 67899999999999999999999976 79999999999
Q ss_pred EEeccCCCC
Q 001064 1105 IEERRPNTG 1113 (1167)
Q Consensus 1105 V~~~r~~~~ 1113 (1167)
|++++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987644
|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=141.09 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=75.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||..+|..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITI-LCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEE-EEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 5689999999999999999999999999999875 557778999999999999999999999658999999999999998
Q ss_pred CCCC
Q 001064 1110 PNTG 1113 (1167)
Q Consensus 1110 ~~~~ 1113 (1167)
+..+
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7544
|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=128.28 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=74.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 68999999999999999999999999999875 56777899999999999999999999986 99999999999999987
Q ss_pred CC
Q 001064 1111 NT 1112 (1167)
Q Consensus 1111 ~~ 1112 (1167)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-15 Score=136.41 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+...++|||+|||+++|+++|+++|++||.|.+|.| ++++. |+++|||||+|.+.++|.+||..+++.|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i-~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEE-ECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEE-EECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345799999999999999999999999999999875 44555 8999999999999999999999889999999999987
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
++
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 65
|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-15 Score=141.97 Aligned_cols=82 Identities=20% Similarity=0.395 Sum_probs=75.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
...++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRI-ISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEE-EecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 35799999999999999999999999999999875 56777899999999999999999999965999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 764
|
| >2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=133.51 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=75.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++|+++|+++|++||.|.+|.|. .+ +|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM-ME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEE-EC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467999999999999999999999999999998763 34 788999999999999999999986 9999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987654
|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=133.06 Aligned_cols=83 Identities=17% Similarity=0.332 Sum_probs=74.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCC---CcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK---DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
+.++|||+|||.++++++|+++|++||.|..|.|. +++. +++++|||||+|.+.++|.+||.. ++..|+|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~-~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTIS-KKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-EEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-ecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46899999999999999999999999999998764 3443 568999999999999999999996 899999999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987543
|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-15 Score=132.67 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=75.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+..+|..|+|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTI-LCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEE-EESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999875 567778999999999999999999999559999999999999998
Q ss_pred CCCC
Q 001064 1110 PNTG 1113 (1167)
Q Consensus 1110 ~~~~ 1113 (1167)
++.+
T Consensus 84 ~~~p 87 (89)
T 3ucg_A 84 TNRP 87 (89)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7543
|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=129.53 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=73.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEE-EECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5699999999999999999999999999999875 56777899999999999999999999966 999999999999987
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=136.01 Aligned_cols=80 Identities=21% Similarity=0.473 Sum_probs=73.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.+++.+||+. +|..|+|+.|+|++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKV-FIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEE-CCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45799999999999999999999999999999875 56777899999999999999999999986 89999999999998
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
+|
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-12 Score=141.97 Aligned_cols=228 Identities=9% Similarity=0.035 Sum_probs=172.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCCCCC
Q 001064 129 FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT----YGDPETIRRLFERGLAYVGTDYLS 204 (1167)
Q Consensus 129 ~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~----~~~~~~Ar~~feral~~~g~d~~s 204 (1167)
.|.+...|+.++.++...+++++|+..|++++. +.+...|..++.++. . .+++++|...|+++++. + .
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~---~--~ 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDL---N--Y 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT---T--C
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHC---C--C
Confidence 477889999999999999999999999999998 688899999988888 6 78899999999999873 1 3
Q ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccch
Q 001064 205 FPLWDKYIEYEYM----QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGA 280 (1167)
Q Consensus 205 ~~lw~~y~~~e~~----~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~ 280 (1167)
...|..++.+... .+++++|...|+++++.
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---------------------------------------------- 107 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---------------------------------------------- 107 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------------------------------------------
Confidence 4555555555444 44555554444444332
Q ss_pred hhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH
Q 001064 281 EVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY 360 (1167)
Q Consensus 281 ~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y 360 (1167)
+ ....|..+
T Consensus 108 ---------------------------------------------------------------------~--~~~a~~~l 116 (273)
T 1ouv_A 108 ---------------------------------------------------------------------K--YAEGCASL 116 (273)
T ss_dssp ---------------------------------------------------------------------T--CHHHHHHH
T ss_pred ---------------------------------------------------------------------C--CccHHHHH
Confidence 1 23445555
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 361 LDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA----SGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 361 ~~~~e~----~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~----~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
+.++.. .+++++|+.+|++++... +...|+.++.++.. .+++++|+..|+++++. ..+..++.++.+
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~ 191 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHH
Confidence 555555 678888888888888763 67788888888877 78888888888888875 356788888888
Q ss_pred HHH----cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhh
Q 001064 433 KEQ----NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 433 ~e~----~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.. .+++++|+..|+++ ++..+ ..++..++.++.. .+++++|+.+|++|++..+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a-~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKA-CELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHH-HHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCCccHHHHHHHHHHH-HhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888 88888888888887 55544 6777888888887 8888899999999888874
|
| >2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=134.65 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=76.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..|.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQL-MMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEE-EEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35699999999999999999999999999999876 56777899999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98763
|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=131.73 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=75.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999875 4455 899999999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987644
|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=132.24 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=74.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||.++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKM-MFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 589999999999999999999999999999875 56777899999999999999999999976 9999999999999998
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+++
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-14 Score=132.90 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=69.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC-----cEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-----RQV 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g-----~~l 1103 (1167)
..++|||+|||+++|+++|+++|++||.|..|.| +.+ |||||+|.+.++|++||+. ++..|+| +.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i-~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-ETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-ecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 4699999999999999999999999999999875 222 8999999999999999986 8999999 999
Q ss_pred EEEeccCCCCC
Q 001064 1104 YIEERRPNTGS 1114 (1167)
Q Consensus 1104 ~V~~~r~~~~~ 1114 (1167)
+|++++++.+.
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999886543
|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-14 Score=132.26 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC---cEeE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG---RQVY 1104 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g---~~l~ 1104 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| ++++ +|+++|||||+|.+.++|.+||+. ++..+.| +.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV-LRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 35799999999999999999999999999999875 4454 789999999999999999999986 8999988 9999
Q ss_pred EEeccCCCC
Q 001064 1105 IEERRPNTG 1113 (1167)
Q Consensus 1105 V~~~r~~~~ 1113 (1167)
|++++++..
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999987654
|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=145.31 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=73.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC--CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..++|||+|||+++|+++|+++|++|| .|.+|.| +.++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i-~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKF-AENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 468999999999999999999999999 8999875 66888999999999999999999999988 8999999999999
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
++++
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8865
|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-15 Score=133.91 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=69.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCC--CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+|||+|||+++|+++|+++|++|| .|.++++ +.++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i-~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKF-FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEE-EECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEE-EecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 5799999999999999999999999 9999875 66788999999999999999999999975 899999999999998
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87543
|
| >2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=133.78 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=74.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhc-CCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe-eeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQN-FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ-LAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~-i~g~~l~V~ 1106 (1167)
+.++|||+|||.++|+++|+++|++ ||.|.+|.| ++++ +|+++|||||+|.+.++|.+||+. ++.. |+|+.|+|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV-VLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEE-EECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEE-EECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 5699999999999999999999999 999999876 4566 899999999999999999999986 8988 999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 987654
|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=130.28 Aligned_cols=80 Identities=25% Similarity=0.363 Sum_probs=73.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTI-MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEE-CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 35699999999999999999999999999999875 56777889999999999999999999975 89999999999998
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=133.87 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=76.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||.++++++|+++|++||.|.+|.+ +.++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEE-EecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 35799999999999999999999999999999875 56778899999999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-15 Score=140.44 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=73.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCc-eeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRI-KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||+++|+++|+++|++||.| ..|.| +.++ +|+++|||||+|.+.++|.+||+.++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV-LVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEE-CCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEE-EECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 356999999999999999999999999999 88765 4566 89999999999999999999999899999999999998
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
|
| >3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.8e-15 Score=136.29 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=75.2
Q ss_pred CCccEEEEecCCC------CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC-
Q 001064 1029 GEVKSVYVRNLPS------TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG- 1100 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g- 1100 (1167)
..+++|||+|||. ++++++|+++|++||.|.+|.| ++++.||+++|||||+|.+.++|.+||+. +|..|+|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEF-PIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3568999999999 9999999999999999999875 66788899999999999999999999976 9999999
Q ss_pred cEeEEEeccCC
Q 001064 1101 RQVYIEERRPN 1111 (1167)
Q Consensus 1101 ~~l~V~~~r~~ 1111 (1167)
+.|+|.+++++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998754
|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=134.39 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=76.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||.++|+++|+++|++||.|.+|.+ +.++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEC-CBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35799999999999999999999999999999875 56777899999999999999999999985 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++.+
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987643
|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=131.38 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=75.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCce-eeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE----e
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK-PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ----V 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~----l 1103 (1167)
+.++|||+|||.++++++|+++|++||.|. +|.| ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKI-IRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEE-EECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-eecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 569999999999999999999999999999 9875 56778899999999999999999999996 899999999 9
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
+|+++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999988643
|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-14 Score=129.54 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=75.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEE-EECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346799999999999999999999999999999875 56777899999999999999999999986 9999999999999
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8864
|
| >2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=130.13 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=74.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++++++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCE-EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEE-EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4689999999999999999999999999998765 56777899999999999999999999966 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
|
| >2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=139.80 Aligned_cols=83 Identities=14% Similarity=0.315 Sum_probs=74.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCcee--eeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCC----eeeCc
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPI----QLAGR 1101 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~----~i~g~ 1101 (1167)
...++|||+|||+++|+++|+++|++||.|.. |+| ++++.+|++||||||+|.+. ++.+||.. +|. .|+|+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i-~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRV-IKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEEC-CBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEE-EEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 45689999999999999999999999999976 765 66788999999999999999 99999987 888 99999
Q ss_pred EeEEEeccCCCC
Q 001064 1102 QVYIEERRPNTG 1113 (1167)
Q Consensus 1102 ~l~V~~~r~~~~ 1113 (1167)
.|+|++++++.+
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987543
|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.3e-14 Score=129.87 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=72.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.+.++|||+|||.++++++|+++|++||.|.+|.| ++++. .++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEE-EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 446799999999999999999999999999999875 44432 3689999999999999999985 9999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998754
|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=130.34 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=72.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCcee--------eeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1100 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g 1100 (1167)
+.++|||+|||.++++++|+++|++||.|.. +.+ +.++.+|+++|||||+|.+.++|.+|++. +|..|+|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEE-EECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEE-EecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4599999999999999999999999999998 875 56778899999999999999999999985 9999999
Q ss_pred cEeEEEecc
Q 001064 1101 RQVYIEERR 1109 (1167)
Q Consensus 1101 ~~l~V~~~r 1109 (1167)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999864
|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=128.94 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=73.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++++++|+++|++||.|.+|.| ++++. .++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEE-ECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 446799999999999999999999999999999875 33432 3899999999999999999986 9999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=170.69 Aligned_cols=171 Identities=17% Similarity=0.177 Sum_probs=154.2
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001064 382 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
..||+++++|..+|.++..+|++++|+..|++|+++. |++..+|..+|.++.+.|++++|+..|+++ ++++|++..+|
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A-l~l~P~~~~a~ 80 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA-IRISPTFADAY 80 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHH
Confidence 3579999999999999999999999999999999988 899999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001064 462 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 541 (1167)
Q Consensus 462 ~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~ 541 (1167)
+.++.++..+|++++|+..|++||++.|+ .+.+|..+|.++.. .|++++|...|++||++.|++...|..++.
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~-~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKD-SGNIPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 99999999999999999999999999864 37789999999776 999999999999999999999999999888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhh
Q 001064 542 FESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 542 ~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
.....++.++ +...|++++.
T Consensus 154 ~l~~~g~~~~---A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTD---YDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTT---HHHHHHHHHH
T ss_pred HHHhcccHHH---HHHHHHHHHH
Confidence 8888776433 5566666554
|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=131.56 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=69.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~--~~~i~g~~l~V 1105 (1167)
.+.++|||+|||+++|+++|+++|++||.|++|.| ++ .||||||+|++.++|.+||+. + +..|+|+.|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i-~~------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 36799999999999999999999999999999875 32 269999999999999999984 4 58999999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++++..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99987644
|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-14 Score=130.14 Aligned_cols=75 Identities=31% Similarity=0.501 Sum_probs=68.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|..|.+ .+|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~---------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK---------LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE---------CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE---------ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 5699999999999999999999999999999764 256999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=153.78 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIA--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV------- 419 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~--------~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~------- 419 (1167)
..|..++.++...|++++|+.+|++++.. .+....+|..++.++...|++++|...|++++.+.+
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555666666677777777777777776 445556778888888888888888888888877542
Q ss_pred -ccChHHHHHH------HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 420 -KRLPEIHLFA------ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 420 -p~~~~l~~~~------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+....+|... +......+.+.++...+.++ ....|....+|..++.++.++|++++|+.+|++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC-KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1222333333 33334455666677777776 566888899999999999999999999999999999874
|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=134.25 Aligned_cols=79 Identities=23% Similarity=0.427 Sum_probs=70.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
..+|||+|||+++|+++|+++|++||.|.+|+| ++++ +.+||||||+|.+.++|++||+. +|..|+|+.|+|++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i-~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV-VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEE-eecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 368999999999999999999999999999886 4443 45799999999999999999976 9999999999999988
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-13 Score=135.68 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
....|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|...+++++... |....+|..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 356788888888899999999999999999999999999999999999999999999999999987 7889999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+...|++++|+.+|+++ ++..|++..+|..++.++...|++++|+.+|++++...+. .+.++..++.++.. .
T Consensus 86 ~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKV-AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN------EGKVHRAIAFSYEQ-M 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-T
T ss_pred HHHhcCHHHHHHHHHHH-HhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHH-c
Confidence 99999999999999998 7789999999999999999999999999999999998753 26788889988776 9
Q ss_pred CCHHHHHHHHHHHHhhcCCCH
Q 001064 513 RNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
|++++|..+|+++++..|++.
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999887764
|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=134.94 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=72.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecC-CCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++++++|+++|++|| |.+|.| ++++ .+|+++|||||+|.+.++|.+||..+|..|+|+.|+|+++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEEC-SCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 459999999999999999999999999 999875 4455 5899999999999999999999966999999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8753
|
| >2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=125.53 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=69.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
+|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|++|++.++..|+|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML-MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC-CBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999875 55677899999999999999999999998999999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-13 Score=168.28 Aligned_cols=248 Identities=13% Similarity=0.030 Sum_probs=191.7
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCL--------IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK 420 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral--------~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p 420 (1167)
++|.+...+...+ ...+++++|+..|++++ ..+|.+.++|+..+..+...|++++|+..|+++++.. |
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p 464 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-G 464 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-C
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-c
Confidence 5666665555444 56799999999999999 8889999999999999999999999999999999988 8
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001064 421 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 500 (1167)
Q Consensus 421 ~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l 500 (1167)
++..+|+.++.++...|++++|+..|+++ ++++|++..+|+.++.++.++|++++ +..|++|++.+|.. +.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a 536 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEV-LDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV------ISA 536 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHH
Confidence 99999999999999999999999999998 78999999999999999999999999 99999999998643 678
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhH--HHHHHHHHHHHhhcCCCCCCCCCHHHH
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPSTANAAER 578 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~--~~~ar~l~eral~~~~~~~~~l~~~~~ 578 (1167)
|..++.++.. .|++++|+..|++++++.|++...|...+...+..+...+ .+.++++.++......+.+. ...-+
T Consensus 537 ~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~--~~~l~ 613 (681)
T 2pzi_A 537 AFGLARARSA-EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR--VLQIR 613 (681)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT--HHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH--HHHHH
Confidence 9999999777 9999999999999999999999888877766554332111 23344444444333322221 22334
Q ss_pred HHHHHHHHHHHHhh--------C---CH----HHHHHHHHHHHhhhCC
Q 001064 579 EELSCVFLEFLGLF--------G---DA----QLIKKAEDRHARLFLP 611 (1167)
Q Consensus 579 ~~i~~~~l~fe~~~--------G---d~----~~~~~v~~r~~~~~~~ 611 (1167)
..++..-+...... | +. ..++++++++..+-+.
T Consensus 614 ~~ll~~~l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~ 661 (681)
T 2pzi_A 614 ALVLGGALDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPT 661 (681)
T ss_dssp HHHHHHHHHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 45565555554332 2 22 3466777777665553
|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-14 Score=130.02 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=72.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCcee-eeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP-DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
...++|||+|||+++|+++|+++|++||.|.+ |.| +.+ .+|+++|||||+|.+.++|.+||..++..|+||.|+|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i-~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL-PVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEEC-CBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEE-EEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 35699999999999999999999999999987 654 445 789999999999999999999999899999999999988
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
+.++
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 7653
|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-14 Score=126.31 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=73.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++++++|+++|++| .|.+|.| +++ .+|+++|||||+|.+.++|.+||..++..|+|+.|+|..++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i-~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRI-VRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEE-EEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEE-EEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 56999999999999999999999999 8999875 445 68899999999999999999999988999999999999998
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+++
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-14 Score=127.20 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=73.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++++++|+++|++||.|..+.|. + .+|+++|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~-~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIK-M--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEE-E--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-c--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56999999999999999999999999999998763 3 3788999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
++...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-12 Score=150.55 Aligned_cols=315 Identities=10% Similarity=0.068 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH----HHhCCHHHHH-----------HHHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL---CYGYWKKYADHE----ARVGSMDKVV-----------EVYER 158 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~---~~~~W~~~a~~e----~~~~~~e~A~-----------~l~er 158 (1167)
++.|+..+. .+++++|..+++.+....+. +..+.+-|..+. ...++++.+. +++++
T Consensus 16 l~~w~~~i~------~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 16 INEWYMYIR------RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHH------HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 345665555 46889999988888776543 555554333332 2334555555 66666
Q ss_pred HHhccCCCHHHHHH------HHHHHHhhcCCHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001064 159 AVQGVTYSVDIWLH------YCIFAINTYGDPETIRRLFERGLAYV---GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 229 (1167)
Q Consensus 159 aL~~~P~s~~lw~~------ya~~~~~~~~~~~~Ar~~feral~~~---g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~ 229 (1167)
.-. .+.+.+.++. .+.++. ..|++++|...|++++... +.+.....+|...+.+....++++.|...|+
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYEL-DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 433 3444343333 455555 6799999999999999863 3332345778888888888999999999999
Q ss_pred HHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001064 230 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309 (1167)
Q Consensus 230 r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~ 309 (1167)
+++++-....+ + ..
T Consensus 168 ~al~~~~~~~~--~----------------------------------------------------------------~~ 181 (383)
T 3ulq_A 168 QAYEIYKEHEA--Y----------------------------------------------------------------NI 181 (383)
T ss_dssp HHHHHHHTCST--T----------------------------------------------------------------HH
T ss_pred HHHHHHHhCcc--c----------------------------------------------------------------hH
Confidence 98765222100 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hc
Q 001064 310 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI-----AC 384 (1167)
Q Consensus 310 ~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~-----~~ 384 (1167)
.........+.+|...+++++|+..|+++++. +.-....+.....|..++..+...|++++|+..|++++. ..
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSM--AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 00012233355778888999999999998861 000001122335788899999999999999999999999 45
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----cChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCC
Q 001064 385 -ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK----RLPEIHLFAARFKEQNGD---IDGARAAYQLVHTETSPG 456 (1167)
Q Consensus 385 -p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p----~~~~l~~~~a~~~e~~g~---~~~A~~~~~~a~~~~~P~ 456 (1167)
+....++..++.++...|++++|...|++++.+... .....+..++.++...|+ +++|+.++++. ...+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHH
Confidence 677889999999999999999999999999998632 122234457778888888 88899988885 44566
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 457 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 457 ~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
...++..++.++..+|++++|..+|++++....
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999875
|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-14 Score=126.67 Aligned_cols=82 Identities=24% Similarity=0.296 Sum_probs=72.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcc-cccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~-~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..++|||+|||.++|+++|+++|++||.|.++.+ +.++.++. ++|||||+|.+.++|.+|+.. +|..|+|+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM-PVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3589999999999999999999999999999876 44554444 899999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
+++..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98754
|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-14 Score=136.90 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=76.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEE-ECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35799999999999999999999999999999875 56778899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++++
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 987643
|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=125.17 Aligned_cols=75 Identities=24% Similarity=0.488 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 56999999999999999999999999999997652 58999999999999999976 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.6e-13 Score=144.95 Aligned_cols=189 Identities=14% Similarity=0.058 Sum_probs=162.7
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--cCh
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLP 423 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p--~~~ 423 (1167)
+++.....+...+..+.+.|++++|+..|++++..+|.+ .++|+.++.++...|++++|+..|++++..+|. ..+
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 456667889999998899999999999999999999998 899999999999999999999999999998732 346
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCCHHHHH
Q 001064 424 EIHLFAARFKEQ--------NGDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGNLEDAF 478 (1167)
Q Consensus 424 ~l~~~~a~~~e~--------~g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~~e~A~ 478 (1167)
.+++..+.++.. .|++++|+..|+++ ++..|++..++ +..+.++.++|++++|+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF-IDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH-HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHH-HHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 788899999999 99999999999998 78899876655 77899999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 479 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 479 ~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
..|++++...|+. ...+.++..++..+.. . |++++|..+|+++++.+|++......+..+
T Consensus 169 ~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~-~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 238 (261)
T 3qky_A 169 VTYEAVFDAYPDT---PWADDALVGAMRAYIA-YAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELY 238 (261)
T ss_dssp HHHHHHHHHCTTS---TTHHHHHHHHHHHHHH-HHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHCCCC---chHHHHHHHHHHHHHH-hcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 9999999998753 3346778888887664 4 889999999999999999997666544433
|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=128.75 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| +.++ +|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADI-LEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 35799999999999999999999999999999875 4444 588999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87643
|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-14 Score=129.37 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=71.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|+.|+.|. + +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~---~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRAR---I-VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEE---E-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEE---E-EecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3569999999999999999999999886443 3 55777899999999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98754
|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-14 Score=128.15 Aligned_cols=81 Identities=25% Similarity=0.346 Sum_probs=72.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.+.++|||+|||.++++++|+++|++||.|.+|.| ++++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTI-CKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 346799999999999999999999999999999875 4444 488999999999999999999985 9999999999999
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8764
|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-15 Score=144.01 Aligned_cols=84 Identities=19% Similarity=0.259 Sum_probs=75.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCcee--------eeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1099 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~ 1099 (1167)
.+.++|||+|||.++++++|+++|++||.|.. |.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45799999999999999999999999999998 665 55667899999999999999999999986 899999
Q ss_pred CcEeEEEeccCCCC
Q 001064 1100 GRQVYIEERRPNTG 1113 (1167)
Q Consensus 1100 g~~l~V~~~r~~~~ 1113 (1167)
|+.|+|++++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987643
|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-15 Score=142.74 Aligned_cols=79 Identities=18% Similarity=0.076 Sum_probs=70.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++|| |.+|.| +.++ +|+++|||||+|.+.++|++||..++..|+||.|+|..+.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i-~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI-EIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC-CCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 568999999999999999999999999 667764 4455 4999999999999999999999668999999999999877
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
++
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=127.24 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=70.7
Q ss_pred CccEEEEecCCCCCCHHHHH----HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++++|||+|||+++++++|+ ++|++||.|.+|.| +.++.+ +|||||+|.+.++|.+||+. +|..|+|+.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i-~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVEL-SPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEE-EeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 46899999999999999999 99999999999875 444443 89999999999999999985 99999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|++++++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99998754
|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-14 Score=132.50 Aligned_cols=81 Identities=12% Similarity=0.252 Sum_probs=73.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++|+++|+++|++||.|.. . .+.++.+|+++|||||+|.+.++|.+||+.+|..|+|+.|+|++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~-~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-L-AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C-CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E-EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999999988 2 3567778899999999999999999999988999999999999998
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=131.91 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=72.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|..+.+.++. .+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM-MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE-ECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEc-CCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 56999999999999999999999999999765443332 2788999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87643
|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=127.36 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=70.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++|+++|+++|++||.|+ + +++ .+|+++|||||+|.+.++|++||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK---V-PQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---C-CBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---E-EEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34579999999999999999999999999883 2 334 6788999999999999999999985 8999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998763
|
| >2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-14 Score=121.97 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=66.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+..||||||++.+|+++|+++|.+||+|+++++.. +||||||+|.+.++|.+|++. |+..++||.|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 58999999999999999999999999999987522 689999999999999999988 8999999999999874
|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-14 Score=135.10 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=73.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||+++|+++|+++|+.||.|..+.+ +.++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~-~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIY-IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCE-EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEE-EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 35699999999999999999999999999988644 55667899999999999999999999998899999999999987
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
.+
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.7e-14 Score=126.36 Aligned_cols=75 Identities=29% Similarity=0.390 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC--CeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP--IQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~--~~i~g~~l~V~ 1106 (1167)
++++|||+|||+++|+++|+++|++||.|++|.+ + +.||||||+|++.++|.+|++. ++ ..|+|++|+|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-M------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-E------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-E------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 6799999999999999999999999999999764 3 2478999999999999999986 44 45899999999
Q ss_pred eccCC
Q 001064 1107 ERRPN 1111 (1167)
Q Consensus 1107 ~~r~~ 1111 (1167)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98865
|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-14 Score=131.83 Aligned_cols=83 Identities=20% Similarity=0.393 Sum_probs=75.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRL-VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEE-EEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEE-EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 35699999999999999999999999999999875 55777899999999999999999999975 89999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=150.89 Aligned_cols=259 Identities=11% Similarity=0.047 Sum_probs=177.6
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--------FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 163 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~--------~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 163 (1167)
.+|.+..+|..++..+.. .+++++|+.+|++++.. .|....+|..++.++...|++++|+.+|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYAS--QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 478889999999999987 48999999999999995 67788999999999999999999999999999873
Q ss_pred --------CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 164 --------TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV-----GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 164 --------P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~-----g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
|....+|..++..+. ..|++++|+..|++++... +.++....+|..++.+....+++++|..+|++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556778888888888 7899999999999999875 44444567888889999999999999999999
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHH
Q 001064 231 ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 310 (1167)
Q Consensus 231 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~ 310 (1167)
++.+-... .... . ..
T Consensus 179 a~~~~~~~-----------~~~~-----------------------------------------------------~-~~ 193 (311)
T 3nf1_A 179 ALEIYQTK-----------LGPD-----------------------------------------------------D-PN 193 (311)
T ss_dssp HHHHHHHT-----------SCTT-----------------------------------------------------C-HH
T ss_pred HHHHHHHH-----------hCCC-----------------------------------------------------C-HH
Confidence 87651100 0000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-cccCCCChhhHHHHHHHH------HHHHHcCChHHHHHHHHHHHHh
Q 001064 311 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPY-FHVKPLSVTELENWHNYL------DFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 311 ~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~-~~v~pld~~~~~~W~~y~------~~~e~~g~~~~a~~~yeral~~ 383 (1167)
.......+..+|...+++++|+..|++++.... ......++.....|.... ......+.+.++...|++++..
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 000122234466777788888888888875100 000001111122333333 3333445666777788888877
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
.+....+|..++.++...|++++|..+|++++++.
T Consensus 274 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 274 SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 77777888888888888888888888888888765
|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.6e-14 Score=127.86 Aligned_cols=75 Identities=21% Similarity=0.419 Sum_probs=68.4
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
+.++|||+|||+ ++++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|+.. +|..++|+.|+|++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 579999999998 9999999999999999999764 268999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987543
|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=123.38 Aligned_cols=76 Identities=20% Similarity=0.351 Sum_probs=68.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.+. ++||||+|.+.++|.+|+.. ++..|+|+.|+|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356999999999999999999999999999997642 45999999999999999976 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987643
|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-14 Score=133.54 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=63.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE-----e
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ-----V 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~-----l 1103 (1167)
..++|||+|||+++|+++|+++|++||.|..|.| +.+ |||||+|.+.++|.+||+. ++..|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE-CTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-ecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 4689999999999999999999999999999765 222 8999999999999999985 999999998 7
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
+|+..+++.
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 777776643
|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=124.94 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V 1105 (1167)
.++++|||+|||+++++++|+++|++||.|.+|.+ ++ .||||||+|++.++|.+|++. ++..|+|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LK------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EC------CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 35799999999999999999999999999999754 32 279999999999999999975 588999999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++.+.-
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99987644
|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-14 Score=127.41 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=72.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCE-EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEE-EEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4599999999999999999999999999998865 55677899999999999999999999986 999999999999986
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=140.24 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=75.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||..+++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|.++
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEE-EecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4699999999999999999999999999999875 56778899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 87644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=139.03 Aligned_cols=165 Identities=11% Similarity=0.091 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 395 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~-~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya 395 (1167)
.++..|...+++++|+..|+++|+ +++ .+...|..++..+...|++++|+..|++++..+|.+..+|+.++
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLK--------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHh--------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346678889999999999999998 565 66778888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhccCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHHHHH
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKRLP-------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIKHAN 466 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~~~-------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~ 466 (1167)
.++...|++++|+..|++++++. |+++ .+|+..+.++...|++++|+..|+++ ++++|+ +..+|+.++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA-TDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH-HhcCCCcccHHHHHHHHH
Confidence 99999999999999999999988 7777 66889999999999999999999998 789999 8999999999
Q ss_pred HHHHcCCH---------------------------HHHHHHHHHHHHhhhCC
Q 001064 467 MERRLGNL---------------------------EDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 467 ~e~r~g~~---------------------------e~A~~~~~kAl~~~~~~ 491 (1167)
++...|+. ++|+.+|++++++.|++
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 88888877 89999999999998753
|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=129.25 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=71.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.+ ++++ +.++|||||+|.+.++|.+|+.. +|..|+|+.|+|++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEE-CCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEE-EECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35699999999999999999999999999999875 3343 34899999999999999999986 99999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8875
|
| >1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=125.82 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=67.2
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~--~~~i~g~~l~V 1105 (1167)
++++|||+|||+ ++|+++|+++|++||.|.+|.| ++ .+|||||+|++.++|.+||+. + +..|+|+.|+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LN------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CS------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-Ec------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 679999999999 9999999999999999999865 32 358999999999999999986 4 56799999999
Q ss_pred EeccCCC
Q 001064 1106 EERRPNT 1112 (1167)
Q Consensus 1106 ~~~r~~~ 1112 (1167)
++++.+.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998653
|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=128.93 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=69.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~--~~~i~g~~l~V 1105 (1167)
.++++|||+|||+++|+++|+++|++||.|++|.| ++ .||||||+|++.++|.+|++. + +..|+|+.|+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EG------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eC------CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 35799999999999999999999999999999875 32 279999999999999999986 3 68999999999
Q ss_pred EeccCCCCC
Q 001064 1106 EERRPNTGS 1114 (1167)
Q Consensus 1106 ~~~r~~~~~ 1114 (1167)
++++++.-.
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999876543
|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=129.33 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=70.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||+++|+++|+++|+.| .|.+|.| +.++ .|+++|||||+|.+.++|.+||..++..|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHL-LKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEE-CCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEE-EECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999 8888875 4455 4899999999999999999999889999999999998775
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=128.66 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=75.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCC-ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~--~~~i~g~~l~V 1105 (1167)
+.++|||+|||.++|+++|+++|++||. |.+|.+...++.+|+++|||||+|.+.++|.+|+.. + +..|+|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4699999999999999999999999998 999875436778889999999999999999999986 4 59999999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987644
|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=127.59 Aligned_cols=79 Identities=27% Similarity=0.321 Sum_probs=72.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||..+++++|+++|++||.|.+|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-HYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35799999999999999999999999999999875 4455 899999999999999999999986 99999999999998
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-11 Score=141.13 Aligned_cols=239 Identities=8% Similarity=0.004 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-------HHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-------PEY 390 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~-------~~~ 390 (1167)
++..+...+++++|+..|+++++. +.-.+-++.....|..++.++...|++++|+..|++|+..++.. ..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESK--LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 455677889999999999999872 11111234456789999999999999999999999999985543 347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cC-CChHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTE-----TS-PGLLE 459 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-----~~-P~~~~ 459 (1167)
+..++.++...|++++|...|++++.+.+.. ...++..+|.++...|++++|+..|+++ ++ .+ |....
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA-IAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhccchhHHH
Confidence 8899999999999999999999999987322 1247888999999999999999999998 44 35 88889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhcCCCHHHH
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN---AEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~---~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
++..++.++.++|++++|..+|++++...+...+ +.....+..++.+.. ..|+ +++|..++++. ...+....++
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-VIYLSEFEFLKSLYL-SGPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 9999999999999999999999999998753211 111122344555543 3777 88888888877 3333444566
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 537 EALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 537 ~~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
..++.+....++ .+.+...|++++..
T Consensus 343 ~~la~~y~~~g~---~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 343 IDVAKYYHERKN---FQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 666777666666 56678888888654
|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-14 Score=123.94 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=69.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
+|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL-PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECC-CCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999875 56777899999999999999999999999999999999999864
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-12 Score=129.89 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
+...+...|...+++++++..|+++++ .++.+...|..++..+...|++++|+.+|++++..+|.+..+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYD--------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCC--------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 334446678889999999999999987 666778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
++.++...|++++|..+|++++... |.+..+++.++.++...|++++|+.+|+++ ++..|++..+|..++.++...|+
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA-LGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH-HhcCccchHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 788999999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCC
Q 001064 474 LEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~~~~ 491 (1167)
+++|..+|++++...|+.
T Consensus 160 ~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 160 HEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 999999999999998754
|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.7e-14 Score=122.83 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=69.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++..+..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 47999999999999999999999999999875 56777899999999999999999999998559999999999875
|
| >2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=129.32 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=73.3
Q ss_pred CccEEEEecCCCCCCHHHHH---HHHhcCCCceeeeEeeecCCC---cccccEEEEEECCHHHHHHHHHh-CCCeeeCcE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIE---EEFQNFGRIKPDGVFVRNRKD---VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1102 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~---g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~ 1102 (1167)
+.++|||+|||+++++++|+ ++|++||.|.+|.| ++++.+ ++++|||||+|.+.++|++||+. +|..|+|+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i-~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI-NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE-ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEE-ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 56899999999999999999 99999999999876 445543 35679999999999999999987 999999999
Q ss_pred eEEEeccCCC
Q 001064 1103 VYIEERRPNT 1112 (1167)
Q Consensus 1103 l~V~~~r~~~ 1112 (1167)
|+|++++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998865
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=137.50 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=76.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEC-CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999999999999999999999999875 56777899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++++
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87644
|
| >2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=128.71 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=71.7
Q ss_pred CccEEEEecCCCCC------CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCc-
Q 001064 1030 EVKSVYVRNLPSTV------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR- 1101 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~- 1101 (1167)
.+++|||+|||+.+ |+++|+++|++||.|.+|.|. +.+|+++|||||+|.+.++|.+||.. +|..|+|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~---~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC---CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee---CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 46899999999999 789999999999999997653 56789999999999999999999986 89999998
Q ss_pred EeEEEeccCC
Q 001064 1102 QVYIEERRPN 1111 (1167)
Q Consensus 1102 ~l~V~~~r~~ 1111 (1167)
.|+|++++..
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9e-14 Score=136.19 Aligned_cols=84 Identities=24% Similarity=0.358 Sum_probs=76.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC-CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999875 55777899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
+++..+
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987544
|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=125.96 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=69.0
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEe
Q 001064 1028 EGEVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQV 1103 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l 1103 (1167)
..++++|||+|||++ +++++|+++|++||.|.+|.| + ++||||||+|++.++|.+||+. ++..|+||.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-M------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-e------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 346799999999998 999999999999999999765 2 2579999999999999999985 4678999999
Q ss_pred EEEeccCCCC
Q 001064 1104 YIEERRPNTG 1113 (1167)
Q Consensus 1104 ~V~~~r~~~~ 1113 (1167)
+|++++.+..
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999976543
|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=130.33 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCC---ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
.+.++|||+|||+++|+++|+++|+.||. |..|+| +.++. |+++|||||+|.+.++|++||+.++..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i-~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEE-EECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEE-EECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 35699999999999999999999999999 888875 44554 89999999999999999999999999999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
..+..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98754
|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-13 Score=123.14 Aligned_cols=74 Identities=31% Similarity=0.417 Sum_probs=67.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcC--CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNF--GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.++|||+|||+++|+++|+++|++| |.|.+|.+ .+|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 56999999999999999999999999 88987643 368999999999999999985 9999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998754
|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-13 Score=123.19 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=67.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V 1105 (1167)
.+.++|||+|||+++++++|+++|++||.|.+|.+ ++ .||||||+|++.++|.+|++. ++..|+|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-MP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 35699999999999999999999999999999754 32 379999999999999999975 457799999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++.+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99987543
|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=123.36 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=70.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
....++|||+|||.++|+++|+++|++||.|. +.+ + +++++|||||+|.+.++|.+||.. +|..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~-~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRL-T----WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEE-E----EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEE-E----cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 33568999999999999999999999999996 554 3 245789999999999999999976 9999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++++
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987643
|
| >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=134.02 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=72.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCC---ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
.+.++|||+|||+++|+++|+++|++||. |.+|.| ++++. |+++|||||+|.+.++|++||+.++..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i-~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEE-EECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEE-EECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 35799999999999999999999999999 888875 45665 99999999999999999999998899999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
..+.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 88754
|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=129.05 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+++|||+|||+++++++|+++|++|| .|..+.|. . ++++|||||+|.+.++|++||+. +|..|+|+.|+|+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~--~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN--T---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS--S---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE--c---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 468999999999999999999999999 89986642 1 24789999999999999999976 89999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-13 Score=130.93 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=69.9
Q ss_pred CccEEEEecCCCCCCHHHHH----HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++++|||+|||+.+++++|+ ++|++||.|.+|.+ ..+|+++|||||+|.+.++|..||.. +|..|.|+.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i----~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV----DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE----CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe----ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 46899999999999999876 69999999988643 23678999999999999999999976 89999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|++++.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998753
|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=121.62 Aligned_cols=75 Identities=24% Similarity=0.398 Sum_probs=67.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.+. +|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356999999999999999999999999999997642 45999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98753
|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.3e-13 Score=127.25 Aligned_cols=82 Identities=26% Similarity=0.299 Sum_probs=74.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..+++|||+|||.++++++|+++|++||.|.+|.| ++++ +|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEE-ECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45799999999999999999999999999999875 4455 899999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=125.73 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=70.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.+.++|||+|||.++++++|+++|++||.|+.+ ..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE------EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3467999999999999999999999999998753 44678999999999999999999986 8999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 998754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.7e-13 Score=132.50 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
+.+|...+++++++..|++++. .+|.+...|..++.++.+.|++++|+..|+++|..+|.++++|+.++.++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY 75 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456677888999999999987 78888889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHH-HHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA-YQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~-~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
...|++++|+..|++++++. |+++.+|+.++.++.+.|++++|... ++++ ++++|+++.+|...+.++.+.|+
T Consensus 76 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a-l~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERA-AKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH-HHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999987 88999999999999999998876665 5887 78999999999988888887774
|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-14 Score=126.39 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=71.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++++++|+++|++||.|.++.| +.++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKA-ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEE-ECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4699999999999999999999999999999875 55777899999999999999999999986 899999998877654
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=122.89 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCC-ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~-~~i~g~~l~V~ 1106 (1167)
+.++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|.+|++. +| ..|+|+.|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 4689999999999999999999999999 665432 2578999999999999999986 89 99999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998753
|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=7e-13 Score=126.07 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=73.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee--------
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-------- 1098 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i-------- 1098 (1167)
+.+.++|||+|||.++|+++|+++|++||.|.+|.| ++++ +|+++|||||+|.+.++|.+||.. +|..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-EECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 346799999999999999999999999999999876 4555 899999999999999999999986 89888
Q ss_pred eCcEeEEEeccCC
Q 001064 1099 AGRQVYIEERRPN 1111 (1167)
Q Consensus 1099 ~g~~l~V~~~r~~ 1111 (1167)
.|+.|+|.+++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998864
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=137.96 Aligned_cols=170 Identities=12% Similarity=0.049 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR----------------YVLCMEASGSMDLAHNALARATHV 417 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~----------------ya~~l~~~g~~e~A~~vl~rA~~~ 417 (1167)
.+.+...+..+...|++++|+.+|++++..+|.++++|+. ++.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556666777778999999999999999999999999999 999999999999999999999998
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhCCCccC
Q 001064 418 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN--LEDAFSLYEQAIAIEKGKEHSQ 495 (1167)
Q Consensus 418 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~--~e~A~~~~~kAl~~~~~~~~~~ 495 (1167)
. |+++.+|+.++.++...|++++|+..|+++ ++++|++..+|+.++.++...|+ .+.+...|++++...+
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKI-LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK------ 155 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc------
Confidence 8 899999999999999999999999999998 78999999999999998766553 4566777777764332
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 496 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 496 ~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
....+...+..... .|++++|+..|+++++++|++.
T Consensus 156 -~~~a~~~~g~~~~~-~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 156 -MQYARYRDGLSKLF-TTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp -HHHHHHHHHHHHHH-HHTHHHHHHHHHHHTTTSCCHH
T ss_pred -hhHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCHH
Confidence 11234445555455 8999999999999999999753
|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-13 Score=132.65 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=72.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.++.| ++++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEE-eecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35799999999999999999999999999999875 56777899999999999999999999976 89999999999986
Q ss_pred c
Q 001064 1108 R 1108 (1167)
Q Consensus 1108 ~ 1108 (1167)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-14 Score=127.22 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=70.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.+ |.+|+.. +|..|+|+.|+|+++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKL-IYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEE-CCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEE-EEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999875 567778999999999999999 9999987 89999999999999887
Q ss_pred CC
Q 001064 1111 NT 1112 (1167)
Q Consensus 1111 ~~ 1112 (1167)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=128.98 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=73.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
...++|||+|||.++++++|+++|++||.|.+|.+ +.++ +|+++|||||+|.+.++|.+|+. ++..|+|+.|.|..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKI-ITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 35699999999999999999999999999999876 4555 89999999999999999999999 999999999999988
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-11 Score=136.18 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhh--hccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 370 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL-AHNALARATHVF--VKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 370 ~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~-A~~vl~rA~~~~--~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
+++++..++++|..+|.+..+|.....++...|+..+ +...+.+++... .+.++.++..+++++.+.|+.++|.++|
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3456667777777777777777777777766665333 334444444322 1456777777777777778888888888
Q ss_pred HHHhhhcCCChHHHHHHHH
Q 001064 447 QLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 447 ~~a~~~~~P~~~~~~~~~a 465 (1167)
+++..+++|-....|...+
T Consensus 282 ~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHH
Confidence 8863347887777776554
|
| >2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=122.60 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=65.2
Q ss_pred ccEEEEecCCCCC------CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCc-E
Q 001064 1031 VKSVYVRNLPSTV------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR-Q 1102 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~-~ 1102 (1167)
+++|||+|||..+ ++++|+++|++||.|.+|.+ . +.+|+++|||||+|.+.++|.+|+.. +|..|+|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i--~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--P-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC--C-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe--c-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3789999999999 77999999999999999764 2 56889999999999999999999986 89999999 8
Q ss_pred eEE
Q 001064 1103 VYI 1105 (1167)
Q Consensus 1103 l~V 1105 (1167)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 876
|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-13 Score=126.07 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=67.5
Q ss_pred CccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..++|||+|||.+ +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4589999999999 999999999999999999764 468999999999999999966 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-12 Score=160.34 Aligned_cols=179 Identities=13% Similarity=0.004 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 001064 323 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 402 (1167)
Q Consensus 323 ~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g 402 (1167)
...+++++|+..|++++.+.+-....++|.....|...+..+...|++++|+..|++++..+|.+.++|+.++.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 45678889999999998211111112778888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001064 403 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 482 (1167)
Q Consensus 403 ~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~ 482 (1167)
++++|+..|++++++. |+++.+|+.++.++.+.|++++ +..|+++ ++++|++..+|+.++.++.++|++++|+..|+
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a-l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTV-WSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHH-HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988 8999999999999999999999 9999998 78999999999999999999999999999999
Q ss_pred HHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 483 QAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 483 kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
+++++.| ..+.+|..++..+..
T Consensus 559 ~al~l~P------~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 559 EVPPTSR------HFTTARLTSAVTLLS 580 (681)
T ss_dssp TSCTTST------THHHHHHHHHHHTC-
T ss_pred hhcccCc------ccHHHHHHHHHHHHc
Confidence 9999985 346778888877544
|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=129.51 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=72.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCC---ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
...++|||+|||+++|+++|+++|+.||. |..|.| +.++. |+++|||||+|.+.++|.+||..++..|+||.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i-~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF-LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEEC-CCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEE-EECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 35799999999999999999999999998 888775 44555 89999999999999999999998899999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
..+.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 98764
|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-13 Score=122.64 Aligned_cols=77 Identities=18% Similarity=0.304 Sum_probs=69.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|..|.+. +.+|||||+|.+.++|.+|++. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 356899999999999999999999999999997642 2478999999999999999976 89999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98754
|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-13 Score=121.30 Aligned_cols=77 Identities=25% Similarity=0.472 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|.+||..+|..|+|+.|+|+.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v---~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV---VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE---EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE---EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 45899999999999999999999999999985 45666654 9999999999999999988999999999999876
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
|
| >3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-13 Score=136.38 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=94.2
Q ss_pred hhHhHHHHHHHHhhhcC-----ccccccccc-CCceEE-EEcCCc--------------------------cc-------
Q 001064 720 QVGSYFVGQYYQVLQQQ-----PDLVHQFYS-DASSMI-RVDGDS--------------------------TE------- 759 (1167)
Q Consensus 720 ~vg~~Fv~~YY~~l~~~-----p~~l~~fY~-~~s~~~-~~~g~~--------------------------~~------- 759 (1167)
.++..|+++||..+++. |..|..+|+ ++|.+. +.+... ..
T Consensus 14 ~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~~r~ 93 (205)
T 3nv0_A 14 TLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFAANRA 93 (205)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTTTSSC
T ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccHHHHH
Confidence 57889999999999987 899999999 577665 222110 00
Q ss_pred --chhchHHHHHHHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEec--------CccccceeEEEEEEeeeC-CeE
Q 001064 760 --SASSMLDIHSLVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTK--------EFCRRRKFVQTFFLAPQE-KGY 826 (1167)
Q Consensus 760 --~~~~~~~i~~~~~~l~~~~~~i~--~~d~q~~~~~~i~v~v~G~~~~~--------~~~~~~~F~q~F~L~~~~-~~y 826 (1167)
-..|.++|.++|.+||.+++.+. +||||+..+++|+|+|+|.++.. +..+++.|+|||+|.|.+ ++|
T Consensus 94 ~~L~~G~~~I~~~L~~LP~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~~~g~~ 173 (205)
T 3nv0_A 94 SRISHGAMDIVVALSRLPATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGKV 173 (205)
T ss_dssp CSCEEHHHHHHHHHHHSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEECSTTCE
T ss_pred HHHhhCHHHHHHHHHhCCCeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEECCCCcE
Confidence 01477899999999999888777 48999998889999999999965 134689999999999996 789
Q ss_pred EEEcceEEe
Q 001064 827 FVLNDIFHF 835 (1167)
Q Consensus 827 ~v~nd~fr~ 835 (1167)
+|.||+|-.
T Consensus 174 ~I~ND~L~I 182 (205)
T 3nv0_A 174 AIVSDQLFI 182 (205)
T ss_dssp EEEEEEEEE
T ss_pred EEEecEEEe
Confidence 999999954
|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-13 Score=125.08 Aligned_cols=75 Identities=25% Similarity=0.388 Sum_probs=68.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+.. +|..|+|+.|+|++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356999999999999999999999999999997653 68999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98754
|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.6e-13 Score=124.68 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=69.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
...++|||+|||.++++++|+++|++||.|.+|.+ +++ +|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV-FPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEE-ETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 35799999999999999999999999999999765 222 68999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987643
|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=130.15 Aligned_cols=79 Identities=27% Similarity=0.132 Sum_probs=70.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCc----eeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRI----KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i----~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
+.++|||+|||+++|+++|+++|++||.| ..|.| +.+ .+|+++|||||+|.+.++|++||+.++..|+||.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i-~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILF-VTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEE-EEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEE-EEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 56899999999999999999999999986 57765 445 5899999999999999999999998999999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87653
|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-13 Score=124.53 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=67.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||.++|+++|+++|++||.|.+|.+ +++ ++|||||+|.+.++|.+|++. ++..|+|+.|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-ARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEE-ESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999775 322 679999999999999999986 89999999999999987
Q ss_pred CC
Q 001064 1111 NT 1112 (1167)
Q Consensus 1111 ~~ 1112 (1167)
+.
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A | Back alignment and structure |
|---|
Probab=99.41 E-value=8e-13 Score=121.48 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=67.2
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++|||+|||. ++++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|+.. +|..++|+.|+|++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 469999999998 9999999999999999999764 268999999999999999986 89999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-13 Score=124.02 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=71.6
Q ss_pred CccEEEEecCCCCCCHHHHH----HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++++|||+|||.++++++|+ ++|++||.|.+|.+. .+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS----RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC----HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE----cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 56999999999999999999 999999999987542 3578899999999999999999986 99999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|++++++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998754
|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-13 Score=124.19 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+++|||+|||.++++++|+++|++||.|.++.+. +++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 46899999999999999999999999999997652 3679999999999999999976 999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-10 Score=132.45 Aligned_cols=207 Identities=11% Similarity=0.018 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----CHHHHHHHHH
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWIRYVL 396 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~-----~~~~w~~ya~ 396 (1167)
|...+++.+|+..|++++...--...+..+.....+..++..+...|++++|+.+|++++..++. ....|..++.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 34444555555555555541000000011233455667777778899999999999999998764 2457888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhc-cChHHHH-----HHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----HHHHHHHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFVK-RLPEIHL-----FAARFKEQNGDIDGARAAYQLVHTETSPGL----LEAIIKHAN 466 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~p-~~~~l~~-----~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~----~~~~~~~a~ 466 (1167)
++...|++++|...+++++.+... ..+..|. ..+.++...|++++|+..++++ ....+.. ...+..++.
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT-AKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS-CCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC-CCCCCCcchhhHHHHHHHHH
Confidence 999999999999999999987532 2222232 2345577899999999999997 5555542 335678888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 467 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 467 ~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
++...|++++|..++++++...+..........++..++..+.. .|+.++|+..|++++...+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ-AGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999865321111223466777888766 9999999999999998654
|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-13 Score=129.28 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=68.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCce--eeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
..++|||+|||+++|+++|+++|++| .|. +|.| +.++. |+++|||||+|.+.++|++||+.++..|+||.|+|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i-~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITL-PVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEEC-CCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEE-EECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 46889999999999999999999999 566 7654 44554 9999999999999999999999888999999999987
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
+.+
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 653
|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=118.90 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=67.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|+ ++|+++|+++|++||.|.+|.| ++++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-------~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-------DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-------ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-------cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35689999996 8999999999999999999764 24789999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-11 Score=135.18 Aligned_cols=236 Identities=9% Similarity=0.026 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhcCC
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG--DFNKVVKLYERCLIACAN 386 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g--~~~~a~~~yeral~~~p~ 386 (1167)
+.....+.....+....+..++++..++++|. ++|....+|..-...+...+ ++++++.+++++|..+|.
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~--------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGIN--------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc
Confidence 33444444444444555555689999999999 89999999999999988888 999999999999999999
Q ss_pred CHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHH--HHHHHHHHHhhhcCCCh
Q 001064 387 YPEYWIRYVLCM----EAS---GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID--GARAAYQLVHTETSPGL 457 (1167)
Q Consensus 387 ~~~~w~~ya~~l----~~~---g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~--~A~~~~~~a~~~~~P~~ 457 (1167)
+..+|..-..++ ... ++.++++.++.++++.+ |++..+|....-++...|.++ ++++.++++ ++.+|.|
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~-i~~d~~N 179 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKV-IDTDLKN 179 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH-HHHCTTC
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHH-HHhCCCC
Confidence 999999999888 666 78999999999999988 899999999999999999988 999999998 7889999
Q ss_pred HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhc-
Q 001064 458 LEAIIKHANMERRLGN------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN-AEKARQILVDSLDHV- 529 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~------~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~-~~~Ar~i~~kal~~~- 529 (1167)
..+|..+..+..+.+. +++++..++++|...|.+ ..+|..+..++.. .|+ .++...+++++++..
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n------~SaW~y~~~ll~~-~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN------PSTWNYLLGIHER-FDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHH-TTCCGGGGHHHHHTTEEGGG
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC------ccHHHHHHHHHHh-cCCChHHHHHHHHHHHhccC
Confidence 9999999998888887 899999999999999754 5688877777665 554 566777888888876
Q ss_pred --CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 530 --QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 530 --p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
+.+...+..++......++ .+.+..+|+++..
T Consensus 253 ~~~~s~~al~~la~~~~~~~~---~~~A~~~~~~l~~ 286 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKK---YNESRTVYDLLKS 286 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHh
Confidence 8888888877777665554 6778999999875
|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=120.90 Aligned_cols=77 Identities=19% Similarity=0.423 Sum_probs=68.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee--CcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA--GRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~--g~~l~V~ 1106 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.+ +. .+|||||+|.+.++|.+|++. ++..|+ |+.|+|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~-~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-VK------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-CS------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eC------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 5689999999999999999999999999999764 21 278999999999999999986 899999 9999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++++
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9988643
|
| >2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-13 Score=124.44 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=69.0
Q ss_pred cEEEEecC----CCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECC----HHH----HHHHHH--h-CCC
Q 001064 1032 KSVYVRNL----PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED----ISG----VQNAIQ--A-SPI 1096 (1167)
Q Consensus 1032 ~~l~V~nl----p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~----~~~----a~~Al~--~-~~~ 1096 (1167)
..|||+|| |+.+++.+|+++|+.||+|.++.+ +.|+.||+++|||||+|.| .++ |.+|+. . +|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~l-i~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEA-FNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEE-EECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999999999999986 6799999999999999996 322 788887 4 899
Q ss_pred eeeCcEeEEEeccC
Q 001064 1097 QLAGRQVYIEERRP 1110 (1167)
Q Consensus 1097 ~i~g~~l~V~~~r~ 1110 (1167)
.|+|+.|+|+..+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-11 Score=133.18 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhhhccC
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACAN---YPEYWIRYVLCMEAS----------GSMDLAHNALARATHVFVKRL 422 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~---~~~~w~~ya~~l~~~----------g~~e~A~~vl~rA~~~~~p~~ 422 (1167)
.|..++.++...|++++|+..|++++...|. ..++|+.++.++... |++++|+..|+++++.+ |++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~ 228 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDS 228 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCC
Confidence 3666777778889999999999999998887 567888888888766 77788888888888877 565
Q ss_pred hHH
Q 001064 423 PEI 425 (1167)
Q Consensus 423 ~~l 425 (1167)
+.+
T Consensus 229 ~~~ 231 (261)
T 3qky_A 229 PLL 231 (261)
T ss_dssp THH
T ss_pred hHH
Confidence 443
|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=116.46 Aligned_cols=74 Identities=23% Similarity=0.429 Sum_probs=66.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeCcEeEEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g~~l~V~ 1106 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.+. + ++|||||+|.+.++|.+|+.. ++..++|+.|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-Q------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-G------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-C------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456999999999999999999999999999997652 2 479999999999999999984 7999999999999
Q ss_pred ecc
Q 001064 1107 ERR 1109 (1167)
Q Consensus 1107 ~~r 1109 (1167)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-13 Score=131.92 Aligned_cols=143 Identities=16% Similarity=0.177 Sum_probs=126.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH
Q 001064 362 DFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 362 ~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
..+...|++++++..|++++...|.++..|+.+|.++...|++++|+..|++++++. |+++.+|..++.++...|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 344566889999999999999989888999999999999999999999999999988 8999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 442 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL-YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~-~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
|+..|+++ ++++|++..+|+.++.++.+.|+++++... +++|+++.|++ +.+|...+.++.. .|
T Consensus 84 A~~~~~~a-l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~------~~~~~l~~~ll~~-~G 148 (150)
T 4ga2_A 84 AVECYRRS-VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS------PAVYKLKEQLLDC-EG 148 (150)
T ss_dssp HHHHHHHH-HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC------HHHHHHHHHHHHT-CC
T ss_pred HHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHH-hC
Confidence 99999998 789999999999999999999999876655 69999999753 6777777776544 55
|
| >3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-13 Score=118.98 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=60.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||+++|+++|+++|++||.|.+|.|.. .+||||||+|++.++|.++ ....+.++|+.|.|..+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~------~srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK------PFRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS------SCCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee------CCCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEc
Confidence 3569999999999999999999999999999987532 2789999999999998843 22234456999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-11 Score=136.64 Aligned_cols=315 Identities=11% Similarity=0.051 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH----hCCHHHHH---------HHHHHHHh
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL---CYGYWKKYADHEAR----VGSMDKVV---------EVYERAVQ 161 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~---~~~~W~~~a~~e~~----~~~~e~A~---------~l~eraL~ 161 (1167)
+.|+..+. .+++.+|..+++.+...... +..+.+-|..+..+ .+.+..+. +.+++.-.
T Consensus 17 ~~wy~~i~------~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 17 NEWYKMIR------QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHH------HcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 45655554 46889999999887765533 44555444333322 23333333 55554322
Q ss_pred cc-CCC----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 162 GV-TYS----VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT---DYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 162 ~~-P~s----~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~---d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
.. +.+ ...|+..+.++. ..|++++|...|++++..... ++....++...+.+....++++.|...|+++++
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEF-DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11 111 113444455555 679999999999999976432 222346677777888888999999999999876
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
+.......- .....
T Consensus 170 ~~~~~~~~~------------------------------------------------------------------~~~~~ 183 (378)
T 3q15_A 170 IYQNHPLYS------------------------------------------------------------------IRTIQ 183 (378)
T ss_dssp HHHTSTTCH------------------------------------------------------------------HHHHH
T ss_pred HHHhCCCch------------------------------------------------------------------hhHHH
Confidence 532210000 00001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hcCCCH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI-----ACANYP 388 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~-----~~p~~~ 388 (1167)
.....+.+|...+++++|+..|+++++.. .-..........+..++..+...|++++|+..|++++. .+|...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELA--MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 22233556788888999999999888610 00001122345788889999999999999999999999 677778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----cChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCChHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVK----RLPEIHLFAARFKEQNGD---IDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p----~~~~l~~~~a~~~e~~g~---~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
.++..++.++...|++++|...+++++.+... .....+..++.++...++ +.+|+..+++. ...+....++
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~~~~~~~~~~ 339 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--CChhHHHHHH
Confidence 89999999999999999999999999998632 122333445566666777 88888888874 4456667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 462 IKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 462 ~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
...+.++...|++++|...|+++++...
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-10 Score=131.60 Aligned_cols=226 Identities=10% Similarity=-0.024 Sum_probs=185.6
Q ss_pred HHHH-HHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhcCCCHHHHHHH
Q 001064 326 KEFD-SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD----------FNKVVKLYERCLIACANYPEYWIRY 394 (1167)
Q Consensus 326 ~~~~-~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~----------~~~a~~~yeral~~~p~~~~~w~~y 394 (1167)
+++. +++..++.+|. ++|....+|..-..++...+. +++++.+++++|..+|.+..+|..-
T Consensus 43 ~e~s~eaL~~t~~~L~--------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 43 GELDESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp TCCSHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444 67889999998 899999999998777665544 6789999999999999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 395 VLCMEASG--SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD-IDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 395 a~~l~~~g--~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~-~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
.-++...+ .+++++.++.++++.. |++..+|.....++...|. +++++..++++ ++.+|.|..+|..+..+..++
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~-I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL-ITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHh
Confidence 99998888 4899999999999988 8999999999999999998 69999999998 788999999999999888777
Q ss_pred --------------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHh
Q 001064 472 --------------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLD 527 (1167)
Q Consensus 472 --------------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~~~Ar~i~~kal~ 527 (1167)
+.+++++.++.++|...|++ ..+|..+..++.... +.++++++.++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d------~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999754 557765544444322 358999999999999
Q ss_pred hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 528 HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 528 ~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
..|++.-.+...+.+..........+.++.++++.+...|
T Consensus 267 ~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 267 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 9999987666666655443222334567888888877665
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=136.37 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=73.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEeccC
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r~ 1110 (1167)
.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|.|.++.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-eecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 489999999999999999999999999999876 5677789999999999999999999999899999999999999987
Q ss_pred CCC
Q 001064 1111 NTG 1113 (1167)
Q Consensus 1111 ~~~ 1113 (1167)
+..
T Consensus 183 k~~ 185 (196)
T 1l3k_A 183 KQE 185 (196)
T ss_dssp ---
T ss_pred hhH
Confidence 654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-12 Score=131.22 Aligned_cols=166 Identities=11% Similarity=0.095 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
.+.+...+..+...|++++|+..|++++..+|.+.++|+.++.++...|++++|+..|++++... | ++.++...+.+.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence 34577788888899999999999999999999999999999999999999999999999999887 5 677766655443
Q ss_pred H-HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 434 E-QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 434 e-~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
. ..++..+|+..|+++ ++++|++..+|+.++.++...|++++|+..|++++...|.. ..+.++..++.++.. .
T Consensus 84 ~~~~~~~~~a~~~~~~a-l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~a~~~l~~~~~~-~ 157 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQE-LAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA----QDGEVKKTFMDILSA-L 157 (176)
T ss_dssp HHHHHTSCHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT----TTTHHHHHHHHHHHH-H
T ss_pred HHhhcccchHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc----ChHHHHHHHHHHHHH-h
Confidence 2 223344578999998 78899999999999999999999999999999999998742 224578888888766 9
Q ss_pred CCHHHHHHHHHHHHh
Q 001064 513 RNAEKARQILVDSLD 527 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~ 527 (1167)
|+.++|...|+++|.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999985
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-11 Score=139.11 Aligned_cols=219 Identities=11% Similarity=0.056 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----- 387 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~-~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~----- 387 (1167)
+......+|...+++++|+..|++++.- +..--++ .....|...+..+...|++++|+..|++++...+..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADY---QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444466788899999999999999871 0000122 235689999999999999999999999999987543
Q ss_pred -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH-
Q 001064 388 -PEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE- 459 (1167)
Q Consensus 388 -~~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~- 459 (1167)
...|..++.++... |++++|+..|++|+++.+... ..++..++.++.+.|++++|+..|+++ +++.|++..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~ 194 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL-IKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHhcCCcc
Confidence 45899999999996 999999999999999884321 467888999999999999999999998 677776543
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhcCCC
Q 001064 460 ------AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH-LVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 460 ------~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~-~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+|+..+.++..+|++++|+..|++++.+.|....... ..++..++..+. ...+++++|...|++++.++|..
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH-HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 6788899999999999999999999998875321111 123334444322 12467999999999999888866
Q ss_pred HHHHH
Q 001064 533 KPLLE 537 (1167)
Q Consensus 533 ~~l~~ 537 (1167)
..++.
T Consensus 274 ~~~~~ 278 (292)
T 1qqe_A 274 ITILN 278 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=134.46 Aligned_cols=224 Identities=11% Similarity=0.033 Sum_probs=154.7
Q ss_pred HHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHH
Q 001064 329 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------ANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 329 ~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~--------p~~~~~w~~ya~~l~~ 400 (1167)
.+++..+++.+. +.++.....|..++..+...|++++|+.+|++++... +....+|..++.++..
T Consensus 25 ~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 25 KQALEDLEKTSG-------HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp HHHHHHHHHHHC-------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 344555655553 1346678899999999999999999999999999884 4556789999999999
Q ss_pred cCCHHHHHHHHHHHHHhh-------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--------CCChHHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVF-------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET--------SPGLLEAIIKHA 465 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~-------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~--------~P~~~~~~~~~a 465 (1167)
.|++++|...|++++.+. .+....++..++.++...|++++|+.+|+++ +++ .|....++..++
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la 176 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA-LEIYATRLGPDDPNVAKTKNNLA 176 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999874 2456788899999999999999999999998 555 677788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCC---ccCchHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHhhcCCCHHHH
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEKGKE---HSQTLPMLYAQYSRFLHLVSR------NAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~~~~---~~~~~~~l~~~~a~~~~~~~g------~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
.++.++|++++|+.+|++++...+... .......+|...+.+... .+ .+.++..+++......|.....+
T Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 177 SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES-KDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT-TCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999999999999754210 001111233333333221 11 13333333333333334444455
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 537 EALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 537 ~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
..++.+....++ .+.+..+|++++.
T Consensus 256 ~~la~~~~~~g~---~~~A~~~~~~al~ 280 (283)
T 3edt_B 256 RSLGALYRRQGK---LEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 555555555554 4446666666654
|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=8e-13 Score=119.21 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=63.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.| ++ .++|||||+|.+.++|++++. .++.++|+.|+|.+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~-----~~~g~afV~f~~~~~a~~~~~-~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI-PK-----PFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC-CS-----SCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEE-ec-----CCCCEEEEEECCHHHHHHHhc-CCceeCCEEEEEEecC
Confidence 4599999999999999999999999999999764 22 268999999999999986533 2566689999999888
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.9e-11 Score=131.03 Aligned_cols=201 Identities=16% Similarity=0.148 Sum_probs=147.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHH
Q 001064 362 DFIERDGDFNKVVKLYERCLIACAN------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAA 430 (1167)
Q Consensus 362 ~~~e~~g~~~~a~~~yeral~~~p~------~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a 430 (1167)
..+...|++++|+..|++++.+.+. ...+|..++.++...|++++|+..|++|+.+.+.. ...++...+
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456789999999999999998532 24689999999999999999999999999988421 145788899
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHHHH
Q 001064 431 RFKEQN-GDIDGARAAYQLVHTETSPGL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPMLYA 502 (1167)
Q Consensus 431 ~~~e~~-g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~-~~~~~l~~ 502 (1167)
.++... |++++|+..|+++ +++.|++ ..+|..++.++.++|++++|+.+|++++...+..... .....++.
T Consensus 125 ~~~~~~lg~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELA-GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999996 9999999999998 6666643 4678999999999999999999999999998754221 12234677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH-----HHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE-----ALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~-----~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
.++.++.. .|++++|+..|+++++++|....... .++... ..++.+..+.+...|++++..
T Consensus 204 ~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~-~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 204 KKGLCQLA-ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHhccCCcc
Confidence 77877665 99999999999999999987654322 222111 123334455566666665443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-11 Score=128.57 Aligned_cols=172 Identities=9% Similarity=0.007 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH---HHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---IHLF 428 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~---l~~~ 428 (1167)
..|...+..+.+.|++++|+..|++++...|.+ .++|+.++.++...|++++|+..|+++++.+ |+++. .++.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHH
Confidence 456777777788999999999999999998876 4799999999999999999999999999988 56553 6777
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCC
Q 001064 429 AARFKEQ------------------NGDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGN 473 (1167)
Q Consensus 429 ~a~~~e~------------------~g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~ 473 (1167)
.+.++.. .|++++|+..|+++ ++..|++..++ +..+.++.+.|+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL-VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHH-HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH-HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 7766654 56788888888887 67788876554 334445555566
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 474 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+++|+..|+++++..|+. +..+.++..++..+.. .|++++|++.|++++...|++
T Consensus 163 ~~~A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~-~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDT---QATRDALPLMENAYRQ-MQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHCcCC---CccHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhhCCCc
Confidence 666666666666655432 1223445555555444 566666666666555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-10 Score=130.17 Aligned_cols=239 Identities=11% Similarity=0.016 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-------HH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-------PE 389 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~-------~~ 389 (1167)
.++..+...+++++|+..|+++++. ..-.+-++.....+..++.++...|+++.|+..|++++...+.. ..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKE--LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHH--HhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 3455677889999999999999872 11111234556788888999999999999999999999875432 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cCCChHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-----TSPGLLE 459 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-----~~P~~~~ 459 (1167)
++..+|.++...|++++|...|++++.+... ....++..+|.++...|++++|+..|+++ ++ .+|....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA-AKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhCChhHHH
Confidence 7889999999999999999999999997631 12457778899999999999999999998 55 6788888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhcCCCHHHH
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN---AEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~---~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
++..++.++.++|++++|+.+|++++........ +.....+..++.+ +...++ +++|..++++. ...+....++
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l~~l-y~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH-KFYKELFLFLQAV-YKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC-SCHHHHHHHHHHH-HSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 9999999999999999999999999998753222 2222233333333 333666 78888888763 2233334555
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 537 EALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 537 ~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
..++.+-...++ .+.+...|++++.
T Consensus 340 ~~la~~y~~~g~---~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCH---FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 566666666665 5567777887765
|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=122.59 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=70.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++|+++|+++|++||.|.+|.+. + ++.++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~-~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG-N---TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-C---STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-e---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46899999999999999999999999999998753 2 245689999999999999999985 999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 764
|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=122.94 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=67.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++||.|.+|.| . +++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i--~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL--P-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--C-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--e-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5689999999999999999999999999998654 2 2578999999999999999986 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+..
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 764
|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=129.67 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=71.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeE----eeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV----FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i----~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++++|||+|||+++|+++|+++|++||.|..+.+ .++...+|+++|||||+|.+.++|.+||.. +|..|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4589999999999999999999999999987521 122235788999999999999999999986 99999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|+++++..
T Consensus 124 V~~a~~~~ 131 (143)
T 3egn_A 124 VQFARSAR 131 (143)
T ss_dssp EEECCCSC
T ss_pred EEECCCCC
Confidence 99998754
|
| >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-12 Score=120.09 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=66.8
Q ss_pred CccEEEE--ecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee-----eCc
Q 001064 1030 EVKSVYV--RNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-----AGR 1101 (1167)
Q Consensus 1030 ~~~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i-----~g~ 1101 (1167)
+.++||| |||++++|+++|+++|++||.|.+|.| .. +||||||+|.+.++|++|++. ||..| .|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--CT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--eC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 5689999 779999999999999999999998653 21 378999999999999999986 89988 789
Q ss_pred EeEEEeccCCCC
Q 001064 1102 QVYIEERRPNTG 1113 (1167)
Q Consensus 1102 ~l~V~~~r~~~~ 1113 (1167)
.|.|.+++..+-
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999886543
|
| >1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-12 Score=125.43 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
...+|||+||++.+|+++|+++|++||.|++|.|. .+ +++|||||+|.+.++|.+|++. +|..|.| +.|+|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~--~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF--TK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEE--ES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEE--eC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 35789999999999999999999999999998652 22 2578999999999999999987 8999965 999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++.-
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9998643
|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-12 Score=116.50 Aligned_cols=78 Identities=10% Similarity=0.201 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++||.|.+|+..+.++.+| .|||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 468999999999999999999999999999985335555443 499999999999999985 999999999999999
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=127.58 Aligned_cols=77 Identities=31% Similarity=0.408 Sum_probs=69.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++|+++|+++|++||.|.+|.| +++ ++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-ARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEE-CSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-eeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 5699999999999999999999999999999875 322 579999999999999999985 999999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
++++
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-12 Score=132.94 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=75.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|.|..+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 35799999999999999999999999999999875 66778899999999999999999999999999999999999987
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
..+
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 654
|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-12 Score=129.86 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=73.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||+++++++|+++|++||.|+.|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEE-CCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35799999999999999999999999999999875 4455 889999999999999999999986 89999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=134.66 Aligned_cols=81 Identities=25% Similarity=0.325 Sum_probs=74.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||||||+++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|.+||.. ++..+.|+.|+|..+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-ecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4589999999999999999999999999999986 67888999999999999999999999987 899999999999887
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-11 Score=147.85 Aligned_cols=162 Identities=12% Similarity=0.057 Sum_probs=132.8
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
.|++++|+.+|++++..+|.+.++|+.++..+...|++++|...|++++++. |++..+|+.++.++...|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999987 889999999999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---CCHHHHHHHHH
Q 001064 447 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---RNAEKARQILV 523 (1167)
Q Consensus 447 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~---g~~~~Ar~i~~ 523 (1167)
+++ ++++|++..+|..++.++.++|++++|+.+|+++++..|.. +.++..++.++.. . |++++|...|+
T Consensus 81 ~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~-~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 81 QQA-SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRR-LCDWRALDVLSAQVR 152 (568)
T ss_dssp HHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCCTTHHHHHHHHH
T ss_pred HHH-HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-hhccccHHHHHHHHH
Confidence 998 78899999999999999999999999999999999998642 6788889988776 8 99999999999
Q ss_pred HHHhhcCCCHHHHH
Q 001064 524 DSLDHVQLSKPLLE 537 (1167)
Q Consensus 524 kal~~~p~~~~l~~ 537 (1167)
++++..|.+...+.
T Consensus 153 ~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 153 AAVAQGVGAVEPFA 166 (568)
T ss_dssp HHHHHTCCCSCHHH
T ss_pred HHHhcCCcccChHH
Confidence 99999998765553
|
| >2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=109.20 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=63.7
Q ss_pred ccE-EEEecCCCCCCHHH----HHHHHhcC-CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEe
Q 001064 1031 VKS-VYVRNLPSTVTAFE----IEEEFQNF-GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1103 (1167)
Q Consensus 1031 ~~~-l~V~nlp~~~t~~~----l~~~F~~~-G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l 1103 (1167)
..+ |||+|||+.+++++ |+++|++| |+|.+| +| |||||.|.+.++|.+|++. +|..|.||+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 344 99999999999988 55899999 599874 23 9999999999999999976 8999999999
Q ss_pred EEEeccCCCCC
Q 001064 1104 YIEERRPNTGS 1114 (1167)
Q Consensus 1104 ~V~~~r~~~~~ 1114 (1167)
+|.+++.++.-
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999987543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-11 Score=129.81 Aligned_cols=232 Identities=12% Similarity=0.050 Sum_probs=171.7
Q ss_pred HcCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------hccChHHHHHHH
Q 001064 366 RDGDFNKVVKLYERCLIAC--------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVF-------VKRLPEIHLFAA 430 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~--------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~-------~p~~~~l~~~~a 430 (1167)
..|++++|+.+|++++... +....+|..++.++...|++++|...|++++.+. .+....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4678888888888888853 4456799999999999999999999999999874 245677889999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC--CccCchHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTET--------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK--EHSQTLPML 500 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~--------~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~--~~~~~~~~l 500 (1167)
.++...|++++|+..|+++ +++ .|....+|..++.++..+|++++|+.+|++++...... ...+....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRA-LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999998 444 47778889999999999999999999999999983210 012334567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh---------cCCCHHHHHHHHHhHhhCCChhH---HHHHHHHHHHHhhcCCC
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLDH---------VQLSKPLLEALIHFESIQSSPKQ---IDFLEQLVDKFLMSNSD 568 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~~---------~p~~~~l~~~~~~~e~~~~~~~~---~~~ar~l~eral~~~~~ 568 (1167)
+..++.++.. .|++++|+.+|+++++. .+....+|.....+......... ...+..+++.+..
T Consensus 172 ~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 246 (283)
T 3edt_B 172 KNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---- 246 (283)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC----
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC----
Confidence 8889988776 99999999999999986 33444555555555544332221 1112222221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 569 SPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 569 ~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
.......++..........|+.+.+.+++++..+.
T Consensus 247 -----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 -----DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11234567888888889999999999999888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-11 Score=126.49 Aligned_cols=162 Identities=10% Similarity=0.068 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHH----------------HHHHHHHcCChHHHHHHHHHHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN----------------YLDFIERDGDFNKVVKLYERCL 381 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~----------------y~~~~e~~g~~~~a~~~yeral 381 (1167)
+...+...+++++|+..|+++++ ++|.+...|.. ++..+...|++++|+..|++++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--------LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566788999999999999998 89999999999 9999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhcCCChHH
Q 001064 382 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD--IDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~--~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
..+|.+.++|+.++.++...|++++|+..|++++++. |+++.+|+.++.++...|+ ...+...|.++ +...| ...
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~ 158 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL-SSPTK-MQY 158 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCH-HHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCCCc-hhH
Confidence 9999999999999999999999999999999999988 8999999999988866553 45566777775 33222 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
.|+..+......|++++|+..|++|+++.|+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 5666777777889999999999999999874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-11 Score=134.71 Aligned_cols=170 Identities=11% Similarity=-0.034 Sum_probs=149.7
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a 430 (1167)
|.+.+.+...+..+...|++++|+.+|++++..+|.+.++|+.++.++...|++++|+.+|++++... |+....++..+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cchHHHHHHHH
Confidence 34567788888888999999999999999999999999999999999999999999999999999887 55555555556
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
..+...++.++|...|+++ ++++|++..+++.++.++...|++++|+..|++++...|+. ....++..++.++..
T Consensus 193 ~~l~~~~~~~~a~~~l~~a-l~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQ-VAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA----ADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----GGGHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHH-HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----ccchHHHHHHHHHHH
Confidence 6566778888999999998 78899999999999999999999999999999999998742 225688889988665
Q ss_pred HhCCHHHHHHHHHHHHh
Q 001064 511 VSRNAEKARQILVDSLD 527 (1167)
Q Consensus 511 ~~g~~~~Ar~i~~kal~ 527 (1167)
.|+.++|...|+++|.
T Consensus 268 -~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 -LGTGDALASXYRRQLY 283 (287)
T ss_dssp -HCTTCHHHHHHHHHHH
T ss_pred -cCCCCcHHHHHHHHHH
Confidence 9999999999999985
|
| >3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=117.63 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=67.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccE-EEEEECCHHHHHHHHHh-CCCeeeC--cEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCY-AFVEFEDISGVQNAIQA-SPIQLAG--RQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~-afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V 1105 (1167)
...+|||+||++.+|+++|+++|++||.|.+|.|. . +.+|| |||+|.+.++|.+|++. +|..|.| +.|+|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~-~-----~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-T-----KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEE-E-----ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEE-c-----CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34789999999999999999999999999998653 2 13578 99999999999999987 8999998 88999
Q ss_pred EeccCCC
Q 001064 1106 EERRPNT 1112 (1167)
Q Consensus 1106 ~~~r~~~ 1112 (1167)
++++++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-12 Score=129.84 Aligned_cols=80 Identities=20% Similarity=0.372 Sum_probs=74.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEeccC
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r~ 1110 (1167)
.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQL-MLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEEC-CCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 479999999999999999999999999999875 5567789999999999999999999999889999999999999987
Q ss_pred C
Q 001064 1111 N 1111 (1167)
Q Consensus 1111 ~ 1111 (1167)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=113.46 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=67.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++| .|.++.+ . +++|||||+|.+.++|.+|++. +|..++|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i--~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--D-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE--E-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE--e-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 35899999999999999999999999 9999765 2 5789999999999999999986 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-09 Score=121.56 Aligned_cols=228 Identities=6% Similarity=-0.060 Sum_probs=180.1
Q ss_pred HcCChH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 366 RDGDFN-KVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 366 ~~g~~~-~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~----------~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
+.|+++ +|+.+++++|..+|.+..+|..-..++...+. +++++..++.++..+ |++..+|.....++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 455554 89999999999999999999999998877655 678999999999988 899999999999999
Q ss_pred HcC--CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 435 QNG--DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 435 ~~g--~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~-~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
..+ ++++++.+++++ ++++|.|..+|..+..+....|. +++++..++++|..+|.+ ...|.+.+.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~-l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N------~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARF-LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHh
Confidence 988 489999999998 78999999999999999999998 699999999999998654 56887777776652
Q ss_pred h-------------CCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCC--Ch-------hHHHHHHHHHHHHhhcCCCC
Q 001064 512 S-------------RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS--SP-------KQIDFLEQLVDKFLMSNSDS 569 (1167)
Q Consensus 512 ~-------------g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~--~~-------~~~~~ar~l~eral~~~~~~ 569 (1167)
. +.++++.+.+.+++..+|++...|. |..+.+... .. +.++....++.+++...|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~-Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF-YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH-HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 1 4589999999999999999999995 333333222 11 23466677788888888765
Q ss_pred CCCCCHHHHHHHHHHHHH---HHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 570 PSTANAAEREELSCVFLE---FLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 570 ~~~l~~~~~~~i~~~~l~---fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
. . ++...+. .....|..+.+...+.++.++-|-
T Consensus 272 ~--------w-~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 272 K--------W-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp H--------H-HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred c--------h-HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 2 1 1111121 222356777888888898888774
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.4e-11 Score=114.61 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=108.5
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+||...+.|+..+..+.+.|++++|+..|+++|..+|.++.+|+.++.++...|++++|+..|++++++. |++..+|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999987 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
+|.++...|++++|+..|+++ ++++|++.+++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDA-LQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHHCcCCHHHHHHHHHh
Confidence 999999999999999999998 78999999888777654
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=124.75 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=73.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEE-EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4689999999999999999999999999999875 56777899999999999999999999985 999999999999997
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-12 Score=118.96 Aligned_cols=77 Identities=25% Similarity=0.370 Sum_probs=65.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCC---cccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD---VVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~ 1106 (1167)
..++|||+|||+++|+++|+++|++||.|. +.+ +.++.+ |+++|||||+|.+.++|++||+.. ..++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~-~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDW-PHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EEC-TTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEE-eecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 458999999999999999999999999998 543 555555 799999999999999999999874 35788888776
Q ss_pred ecc
Q 001064 1107 ERR 1109 (1167)
Q Consensus 1107 ~~r 1109 (1167)
..+
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=126.73 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=74.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..++|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRI-MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 3589999999999999999999999999999875 56777899999999999999999999975 999999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
++..
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 7654
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=125.58 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=74.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..++|+.|+|.+++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL-VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 489999999999999999999999999999875 56777899999999999999999999985 9999999999999987
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-09 Score=124.74 Aligned_cols=285 Identities=9% Similarity=0.012 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH--
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-- 388 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~-- 388 (1167)
.....+..++...+++++++..+++++.. .|.+.. ....+..++..+...|++++|+.+|++++...+...
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEE-----LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 44555666788889999999999999873 122211 223556667777889999999999999998755332
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-
Q 001064 389 ----EYWIRYVLCMEASGSMDLAHNALARATHVFVK-------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG- 456 (1167)
Q Consensus 389 ----~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p-------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~- 456 (1167)
..+..++.++...|++++|...|++++.+... ....++..++.++...|++++|+..|+++ +++.+.
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~ 168 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-IEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTTTS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHhhcc
Confidence 23567788888899999999999999997631 23456677889999999999999999998 555543
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 457 ----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 457 ----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~--~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
....+..++.++...|++++|+.++++++...+.... ....... ...+.++. ..|++++|+.++++++...+
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIYWQ-MTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHSCCCCC
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHH-HCCCHHHHHHHHHhCCCCCC
Confidence 3467888899999999999999999999988643211 1111111 12233333 48999999999999998776
Q ss_pred CC----HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001064 531 LS----KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 606 (1167)
Q Consensus 531 ~~----~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~ 606 (1167)
.+ ...+..++.+....+. .+.+..++++++....... ......+++..........|+.+.....+++..
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGE---FEPAEIVLEELNENARSLR---LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 43 2234566666666666 4556677777655422111 122334466666777778899999999999988
Q ss_pred hhhCC
Q 001064 607 RLFLP 611 (1167)
Q Consensus 607 ~~~~~ 611 (1167)
++...
T Consensus 321 ~~~~~ 325 (373)
T 1hz4_A 321 KLANR 325 (373)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 87653
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=131.01 Aligned_cols=83 Identities=20% Similarity=0.401 Sum_probs=76.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL-ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE-EecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3589999999999999999999999999999875 56777899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
++++.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87644
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-11 Score=137.83 Aligned_cols=311 Identities=11% Similarity=0.095 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
+++++|+.++++. +....|..+|..+.+.+++++|++.|.++ .+...|..-+.-.. ..|++++|+..|+
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae-~~g~~EeAi~yl~ 85 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHH-hCCCHHHHHHHHH
Confidence 5678888888887 33468888888888888888888888775 23445555555554 5788888888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhh
Q 001064 193 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVA 272 (1167)
Q Consensus 193 ral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~ 272 (1167)
.+++..+. ..+...++....+.|++.++..+|+. | . ...+.
T Consensus 86 ~ark~~~~----~~i~~~Li~~Y~Klg~l~e~e~f~~~----p-n-~~a~~----------------------------- 126 (449)
T 1b89_A 86 MARKKARE----SYVETELIFALAKTNRLAELEEFING----P-N-NAHIQ----------------------------- 126 (449)
T ss_dssp ---------------------------CHHHHTTTTTC----C-------------------------------------
T ss_pred HHHHhCcc----chhHHHHHHHHHHhCCHHHHHHHHcC----C-c-HHHHH-----------------------------
Confidence 87774222 23444444455557777777555431 1 1 11111
Q ss_pred hCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChh
Q 001064 273 AAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT 352 (1167)
Q Consensus 273 ~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~ 352 (1167)
..+..+...+.+++|+..|..+
T Consensus 127 --------------------------------------------~IGd~~~~~g~yeeA~~~Y~~a-------------- 148 (449)
T 1b89_A 127 --------------------------------------------QVGDRCYDEKMYDAAKLLYNNV-------------- 148 (449)
T ss_dssp ------------------------------------------------------CTTTHHHHHHHT--------------
T ss_pred --------------------------------------------HHHHHHHHcCCHHHHHHHHHHh--------------
Confidence 0122345567777777778754
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
..|..+++.+.+.|+++.|+.+|+++ .++..|..........|+++.|..+... +.. .++-......+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~----~ad~l~~lv~~ 216 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV----HADELEELINY 216 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT----CHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh----CHhhHHHHHHH
Confidence 35899999999999999999999998 4688999988888888999988665543 222 33334456677
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL--GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~--g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
+++.|.+++|..+|+++ +.+++.+..+|..++.++.+- +++.+.++.|...+.+.+-- .......+|..+..++..
T Consensus 217 Yek~G~~eEai~lLe~a-L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~-~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 217 YQDRGYFEELITMLEAA-LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL-RAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHTTCHHHHHHHHHHH-TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH-HHHHTTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHh
Confidence 88899999999999998 688888888888887776543 56666666666666655400 000113477777666444
Q ss_pred HhCCHHHHHHHHHHHHhh------------cCCCHHHHHHHHHhHhhC
Q 001064 511 VSRNAEKARQILVDSLDH------------VQLSKPLLEALIHFESIQ 546 (1167)
Q Consensus 511 ~~g~~~~Ar~i~~kal~~------------~p~~~~l~~~~~~~e~~~ 546 (1167)
.++++.|....-..... .+.+.+++-..+.|-+..
T Consensus 295 -~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~ 341 (449)
T 1b89_A 295 -YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 341 (449)
T ss_dssp -TTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred -hchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 88899888876665443 455667777777776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.5e-11 Score=137.21 Aligned_cols=386 Identities=9% Similarity=0.018 Sum_probs=158.0
Q ss_pred ccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhh
Q 001064 35 AAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDN 114 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~ 114 (1167)
+..+-...|+.+.|.+-+.++.+ + . .-...+..+.+.+++++|++.|.+ ..|...|...+..++.. |+
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~-~--~--vWs~La~A~l~~g~~~eAIdsfik-----a~D~~~y~~V~~~ae~~--g~ 76 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNE-P--A--VWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTS--GN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCCC-h--H--HHHHHHHHHHHcCCHHHHHHHHHc-----CCCHHHHHHHHHHHHhC--CC
Confidence 33444455666666665555511 1 1 122233333333666666666643 24555666666666553 56
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001064 115 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERG 194 (1167)
Q Consensus 115 ~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fera 194 (1167)
+++|+++++.+++.-++ ......++..+.+.|++++++++|+. | +...|...+..+. ..|.+++|+..|.++
T Consensus 77 ~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~-~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 77 WEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCY-DEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC-----C------------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 66666666666654333 45555566666666666666655531 2 3346666666665 456666666666655
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhC
Q 001064 195 LAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA 274 (1167)
Q Consensus 195 l~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~ 274 (1167)
.-|..++..+..+|+++.|...|+++. +. ..|
T Consensus 149 -----------~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~-~~W------------------------------- 180 (449)
T 1b89_A 149 -----------SNFGRLASTLVHLGEYQAAVDGARKAN-----ST-RTW------------------------------- 180 (449)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----CH-HHH-------------------------------
T ss_pred -----------hhHHHHHHHHHHhccHHHHHHHHHHcC-----Cc-hhH-------------------------------
Confidence 135666666666666666666666661 11 111
Q ss_pred CCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhH
Q 001064 275 PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL 354 (1167)
Q Consensus 275 ~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~ 354 (1167)
...+. .....++++.|...... |. .++.++
T Consensus 181 -------------------------------------k~v~~----aCv~~~ef~lA~~~~l~-L~--------~~ad~l 210 (449)
T 1b89_A 181 -------------------------------------KEVCF----ACVDGKEFRLAQMCGLH-IV--------VHADEL 210 (449)
T ss_dssp -------------------------------------HHHHH----HHHHTTCHHHHHHTTTT-TT--------TCHHHH
T ss_pred -------------------------------------HHHHH----HHHHcCcHHHHHHHHHH-HH--------hCHhhH
Confidence 11111 12233444444333332 11 455443
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhhhc-----cChHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA--SGSMDLAHNALARATHVFVK-----RLPEIHL 427 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~--~g~~e~A~~vl~rA~~~~~p-----~~~~l~~ 427 (1167)
. ..+.++++.|.+++++.+++++|...+.+..+|..++.++.+ .+++.+.++.|...+.+. | ....+|.
T Consensus 211 ~---~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~-k~~~~~~~~~~w~ 286 (449)
T 1b89_A 211 E---ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP-KVLRAAEQAHLWA 286 (449)
T ss_dssp H---HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH-HHHHHHHTTTCHH
T ss_pred H---HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 2 577788888999999999999998888888899988887765 345666777776666543 5 5778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh-----------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHT-----------ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~-----------~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
.+..++...++++.|...+-.-.. -..+.+.+++++.+.|+... .......+..++.-. .+
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~~l~~ll~~l~~~------ld 358 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPR------LD 358 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGG------CC
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc------cC
Confidence 888888899999988765443200 01456778888888887632 334444455454211 01
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHH
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVD 560 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~e 560 (1167)
.. ....+..+ .|++.-.+.+++.... -++..+-+++-.+...-.+ .+.+|...+
T Consensus 359 ~~----r~v~~~~~-~~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed---~~~lr~si~ 412 (449)
T 1b89_A 359 HT----RAVNYFSK-VKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEED---YQALRTSID 412 (449)
T ss_dssp HH----HHHHHHHH-TTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred cH----HHHHHHHH-cCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhh---HHHHHHHHH
Confidence 11 12222233 6667766666654432 3456666666666555433 455565544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.6e-11 Score=117.91 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 001064 324 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS 403 (1167)
Q Consensus 324 ~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~ 403 (1167)
...++..+-..|++++. ++|.+.+.|..++..+.+.|++++|+..|++++..+|.++.+|+.++.++...|+
T Consensus 14 ~l~~~~~~~~~l~~al~--------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 14 AVIDAINSGATLKDINA--------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHTSCCTGGGCC--------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCHHHHhC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence 33444445556788887 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001064 404 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 404 ~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
+++|+..|++++.+. |+++.+|+.++.++...|++++|+..|+++ +++.|+..
T Consensus 86 ~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a-l~l~~~~~ 138 (151)
T 3gyz_A 86 FQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELV-IQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCCCHH
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCHH
Confidence 999999999999988 889999999999999999999999999998 78888764
|
| >2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-11 Score=113.42 Aligned_cols=75 Identities=23% Similarity=0.230 Sum_probs=65.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccE-EEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCY-AFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~-afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
...|||+||++.+|+++|+++|++||.|++|.| +. + .|| |||+|.+.++|..|++. +|..|.| +.|+|+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i-~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI-FK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEE-EE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEE-Ee-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 356789999999999999999999999999875 32 2 276 99999999999999987 8999988 589999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=122.64 Aligned_cols=113 Identities=10% Similarity=-0.019 Sum_probs=105.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccC
Q 001064 85 RLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVT 164 (1167)
Q Consensus 85 ~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P 164 (1167)
.|+++++.+|.+.++|+.++..+... |++++|...|++++..+|.+..+|..++.++...|++++|+..|++++.+.|
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNK--GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 35567778999999999999999874 8999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 165 YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 165 ~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.++..|+.++..+. ..|++++|+..|++++...+.
T Consensus 102 ~~~~~~~~lg~~~~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 102 NDYTPVFHTGQCQL-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp SCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred CCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999998 789999999999999997765
|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=128.01 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++||.|.+|+| .++. +|+++|||||+|++.++|.+||...+..|+|+.|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i-~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE-EECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE-EECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 4689999999999999999999999999999875 3343 5889999999999999999999987789999999999876
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-11 Score=122.26 Aligned_cols=158 Identities=11% Similarity=-0.040 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
...+...+++++|+..|+++++ ++|.+...|..++.++...|++++|+..|++++...| ++.++...+.+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSD--------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCH--------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 4567788999999999999998 7899999999999999999999999999999999999 887766655432
Q ss_pred -HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh--HHHHHHHHHHHHHcCCHH
Q 001064 399 -EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL--LEAIIKHANMERRLGNLE 475 (1167)
Q Consensus 399 -~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~--~~~~~~~a~~e~r~g~~e 475 (1167)
...+....|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ++++|+. ..+|..++.++..+|+.+
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNI-LKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 22233445789999999987 899999999999999999999999999998 7889876 569999999999999999
Q ss_pred HHHHHHHHHHHh
Q 001064 476 DAFSLYEQAIAI 487 (1167)
Q Consensus 476 ~A~~~~~kAl~~ 487 (1167)
+|...|+++|..
T Consensus 162 ~A~~~y~~al~~ 173 (176)
T 2r5s_A 162 AIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999999999864
|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=110.64 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=63.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcC----C-------CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNF----G-------RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i 1098 (1167)
+.++|||+|||+++++++|+++|++| | .|.++.+ . +.+|||||+|.+.++|.+|+..+|..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~------~~kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-N------QDKNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-C------SSSSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-c------CCCcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 56999999999999999999999999 8 8888654 2 237999999999999999995599999
Q ss_pred eCcEeEEEe
Q 001064 1099 AGRQVYIEE 1107 (1167)
Q Consensus 1099 ~g~~l~V~~ 1107 (1167)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=128.65 Aligned_cols=169 Identities=13% Similarity=0.002 Sum_probs=146.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
.|...+.++..+..+...|++++|...|++++... |+++.+++.++.++.+.|++++|+.+|+++ ...+|+....++.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~-~~~~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTI-PLQDQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTS-CGGGCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhC-chhhcchHHHHHH
Confidence 38888999999999999999999999999999988 899999999999999999999999999998 7889987777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC--HHHHHHHHH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIH 541 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~--~~l~~~~~~ 541 (1167)
....+.+.++.++|+..|++++...|++ +.++..++.++.. .|++++|+..|+++++.+|++ ...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 7666777888999999999999998743 7799999999876 999999999999999999998 788888888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhh
Q 001064 542 FESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 542 ~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
+....+..+ .+...|.++|.
T Consensus 264 ~~~~~g~~~---~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGD---ALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHcCCCC---cHHHHHHHHHH
Confidence 877776533 34555565544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-11 Score=119.15 Aligned_cols=117 Identities=8% Similarity=0.019 Sum_probs=109.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001064 84 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 163 (1167)
Q Consensus 84 ~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 163 (1167)
..|+++++.+|.+.++|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQ--SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45788999999999999999999987 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC
Q 001064 164 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL 203 (1167)
Q Consensus 164 P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~ 203 (1167)
|.+...|+.++..+. ..|++++|+..|++++...|.++.
T Consensus 86 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 86 IXEPRFPFHAAECLL-QXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999998 789999999999999998877643
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=127.39 Aligned_cols=83 Identities=20% Similarity=0.419 Sum_probs=76.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEE-EECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEE-eecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4699999999999999999999999999999875 55667899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=114.10 Aligned_cols=109 Identities=20% Similarity=0.279 Sum_probs=93.5
Q ss_pred CChhhHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDF------NKVVKLYERCLIACAN--------YPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~------~~a~~~yeral~~~p~--------~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
..|.+++.|..|++.+++.|+. ++.+.+|+||+...|- |..+|++||.+. ..++.++|+.+|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 4667799999999999999999 9999999999998763 456999999875 458999999999999
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 460 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 460 (1167)
+.++ +++..+|+++|.|+.++|+++.|++++.++ +.+.|...++
T Consensus 87 ~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~A-iG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKA-VERGAVPLEM 130 (161)
T ss_dssp HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCBCHHH
T ss_pred HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHH-hccCCCcHHH
Confidence 9985 788999999999999999999999999998 6677765443
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.9e-12 Score=133.03 Aligned_cols=78 Identities=24% Similarity=0.451 Sum_probs=70.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||+++|+++|+++|++||.|.+|+| +++. +.++|||||+|.+.++|.+||+. ||..|+|+.|+|++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i-~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV-VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEe-eccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 478999999999999999999999999999886 4443 44799999999999999999976 9999999999999987
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 65
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=142.46 Aligned_cols=156 Identities=21% Similarity=0.158 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e 405 (1167)
+++++|+..|+++++ ++|.+...|..++..+...|++++|+..|++++..+|.+..+|+.++.++...|+++
T Consensus 3 g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 466788888999988 788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYE 482 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~~~~ 482 (1167)
+|...|++++++. |++..+|+.++.++...|++++|+..|+++ ++++|++..+|..++.++..+ |++++|...|+
T Consensus 75 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 75 EAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRA-HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999999987 889999999999999999999999999998 788999999999999999999 99999999999
Q ss_pred HHHHhhhCC
Q 001064 483 QAIAIEKGK 491 (1167)
Q Consensus 483 kAl~~~~~~ 491 (1167)
++++..|..
T Consensus 153 ~al~~~p~~ 161 (568)
T 2vsy_A 153 AAVAQGVGA 161 (568)
T ss_dssp HHHHHTCCC
T ss_pred HHHhcCCcc
Confidence 999998753
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=124.79 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=72.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|+.. +..++|+.|.|..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI-MKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEEC-CCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEccccccc
Confidence 4689999999999999999999999999999875 66777899999999999999999999994 789999999998776
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=112.68 Aligned_cols=119 Identities=8% Similarity=0.025 Sum_probs=106.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH
Q 001064 89 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD 168 (1167)
Q Consensus 89 ~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~ 168 (1167)
+...||+..++|..+|..+.+ .|++++|+..|+++|+.+|.+..+|..++.++.+.|++++|+..|+++|++.|.+.+
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFK--KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 455899999999999999987 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001064 169 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 169 lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~ 213 (1167)
.|+.++..+. ..|++++|+..|+++|+..|.+ ..++..+..
T Consensus 83 a~~~lg~~~~-~~~~~~~A~~~~~~al~l~P~~---~~a~~~l~~ 123 (126)
T 4gco_A 83 GYIRKAACLV-AMREWSKAQRAYEDALQVDPSN---EEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHH
Confidence 9999999998 7899999999999999976654 555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-09 Score=121.31 Aligned_cols=245 Identities=7% Similarity=-0.036 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g-~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
++|..+.....+.+..++|+.+++++|..+|.+..+|..-..++...+ .+++++..+++++..+ |++..+|.....++
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 445555555555566779999999999999999999999999999998 5999999999999988 89999999999999
Q ss_pred HHc-C-CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001064 434 EQN-G-DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE--------DAFSLYEQAIAIEKGKEHSQTLPMLYAQ 503 (1167)
Q Consensus 434 e~~-g-~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e--------~A~~~~~kAl~~~~~~~~~~~~~~l~~~ 503 (1167)
... + ++++++.+++++ ++++|.+..+|..+..+..+.+.++ +++..++++|+.++.+ ...|.+
T Consensus 134 ~~l~~~~~~~EL~~~~k~-L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N------~SAW~~ 206 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGS-LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN------NSAWGW 206 (349)
T ss_dssp HHHCCSCCHHHHHHHHHH-TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred HHhcCCChHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 887 7 899999999998 7899999999999998888888777 9999999999998654 558877
Q ss_pred HHHHHHHHhCC-------HHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChh-------------HHHH-HHHHHHHH
Q 001064 504 YSRFLHLVSRN-------AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK-------------QIDF-LEQLVDKF 562 (1167)
Q Consensus 504 ~a~~~~~~~g~-------~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~-------------~~~~-ar~l~era 562 (1167)
.+.++.. .++ ++++.+.+++++..+|++...|..+..+....+... .++. .-.+.+.+
T Consensus 207 R~~lL~~-l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (349)
T 3q7a_A 207 RWYLRVS-RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG 285 (349)
T ss_dssp HHHHHTT-STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred HHHHHHh-ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence 7766555 665 799999999999999999999975555554443320 0110 11222333
Q ss_pred hhcCCCC----CCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 563 LMSNSDS----PSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 563 l~~~~~~----~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+...... ..+ ...-++...++.....|+.+.+.++.+++.+.+-+.
T Consensus 286 ~~~~~~~~~~~~~~----~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 286 FPMPSDPLPEDTPL----PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp CCCCC-CCCSSCCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHhcccccccCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 2221111 001 111245555555556689889999999887555443
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-11 Score=123.80 Aligned_cols=77 Identities=22% Similarity=0.459 Sum_probs=71.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEE-EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 489999999999999999999999999999875 55667899999999999999999999986 999999999999986
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-10 Score=106.44 Aligned_cols=133 Identities=23% Similarity=0.317 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
..|..++..+...|++++|+.+|++++...|.+...|..++.++...|++++|..++++++... |....+|+.++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3578888888899999999999999999999999999999999999999999999999999987 778899999999999
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
..|++++|+.+|+++ +...|++..+|..++.++.+.|++++|..+|++++...|
T Consensus 81 ~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKA-LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999998 678999999999999999999999999999999998875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=124.11 Aligned_cols=163 Identities=9% Similarity=-0.072 Sum_probs=138.4
Q ss_pred cccCCCCchHHHHHHHHHHhCCCC---HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH-
Q 001064 73 LVDGSAMSGEEDRLWNIVKANSSD---FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG---YWKKYADHEAR- 145 (1167)
Q Consensus 73 ~~~~~~~~~a~~~l~~~l~~nP~d---~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~---~W~~~a~~e~~- 145 (1167)
+.+.|++++|+..|+++++.+|.+ .++|+.++..+... +++++|+..|+++++.+|++.. +|+.++..+..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~--~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN--ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 344489999999999999999886 47999999999884 8999999999999999999874 67777777665
Q ss_pred -----------------hCCHHHHHHHHHHHHhccCCCHHHH-----------------HHHHHHHHhhcCCHHHHHHHH
Q 001064 146 -----------------VGSMDKVVEVYERAVQGVTYSVDIW-----------------LHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 146 -----------------~~~~e~A~~l~eraL~~~P~s~~lw-----------------~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
.|++++|+..|++++..+|.+...| +..+.++. ..|++++|+..|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~ 170 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT-ERGAWVAVVNRV 170 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHHHHHHHH
Confidence 5789999999999999999998776 34455666 579999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001064 192 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 238 (1167)
Q Consensus 192 eral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~ 238 (1167)
+++++..|.++.....|...+......|+++.|+..|++++..++.+
T Consensus 171 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 171 EGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 99999877765445788889999999999999999999998876653
|
| >2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A | Back alignment and structure |
|---|
Probab=99.18 E-value=7.9e-11 Score=109.36 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=68.1
Q ss_pred CccEEEEecCCC-----CCCHHHHHHHHhcCCCceeeeEeeecCC-CcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE
Q 001064 1030 EVKSVYVRNLPS-----TVTAFEIEEEFQNFGRIKPDGVFVRNRK-DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1102 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-----~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~ 1102 (1167)
+++.|+|+|+.. +-++++|+++|++||.|.+|.| ++++. +++++|||||+|.+.++|.+|+.. ||..|+||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i-~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVI-FEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEE-EECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEE-ecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 468999999962 2378999999999999999876 44443 468899999999999999999986 999999999
Q ss_pred eEEEeccC
Q 001064 1103 VYIEERRP 1110 (1167)
Q Consensus 1103 l~V~~~r~ 1110 (1167)
|+|+++++
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99998764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=115.19 Aligned_cols=116 Identities=10% Similarity=0.051 Sum_probs=106.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001064 84 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 163 (1167)
Q Consensus 84 ~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 163 (1167)
..|+++++.+|.+.+.|+.++..+.. .+++++|+..|++++..+|++..+|..++.++.+.|++++|+..|++++...
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQ--AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45677888999999999999999887 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001064 164 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 202 (1167)
Q Consensus 164 P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~ 202 (1167)
|.+..+|+.++..+. ..|++++|+..|++++...|.++
T Consensus 83 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 83 INEPRFPFHAAECHL-QLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999998 78999999999999999877654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.18 E-value=8.2e-10 Score=105.93 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
++|+.++..+...|++++|..+|++++... |....+|..++.++...|++++|+.+|+++ +...|++..+|..++.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA-LELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHH-HHHCCCchHHHHHHHHHH
Confidence 468889999999999999999999999877 778899999999999999999999999998 678999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 469 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
...|++++|+.+|++++...+. .+.++..++.++.. .|++++|+.+|+++++..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-HccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999998753 25678888888776 999999999999999988864
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.9e-10 Score=114.18 Aligned_cols=127 Identities=9% Similarity=0.043 Sum_probs=114.7
Q ss_pred ccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCCH-
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVGSM- 149 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~-e~~~~~~- 149 (1167)
.+...++++.++..|+++++.+|.+.++|+.++..+... +++++|+.+|++++..+|.+..+|..++.+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ--NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 344458999999999999999999999999999999874 899999999999999999999999999999 8899998
Q ss_pred -HHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 150 -DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 150 -e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
++|+.+|++++...|.+..+|..++..+. ..|++++|+..|++++...|.+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAF-MQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999998 6899999999999999977665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-10 Score=125.96 Aligned_cols=176 Identities=14% Similarity=0.050 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-----cC
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVK-----RL 422 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p-----~~ 422 (1167)
...+...+..+...|++++|+..|++++.+.+.. ..+|..++.++...|++++|+..|++++.++.. ..
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3455556677788899999999999999886432 347888888888899999999999999988632 12
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
..++..++.++.. |++++|+..|+++ +++.+.. ..++..++.++.++|++++|+.+|++++.+.+.......
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQA-AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 4567778888888 9999999999998 5555432 467888899999999999999999999998764322111
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
....+..++.+... .|++++|+..|++++ ..|...
T Consensus 194 ~~~~~~~~g~~~~~-~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 194 CYKKCIAQVLVQLH-RADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHh-CCCCCC
Confidence 22355666666544 799999999999999 888643
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=119.99 Aligned_cols=80 Identities=25% Similarity=0.296 Sum_probs=70.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||.++|+++|+++|++||.|.+|.+ ++++ +|+++|||||+|.+.++|.+|+.. +|..++|+.|+|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKI-MIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEE-ECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEE-EECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 58999999999999999999999999999775 3343 578999999999999999999955 99999999999999876
Q ss_pred CCC
Q 001064 1111 NTG 1113 (1167)
Q Consensus 1111 ~~~ 1113 (1167)
...
T Consensus 79 ~~~ 81 (166)
T 3md3_A 79 SQQ 81 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=133.38 Aligned_cols=188 Identities=7% Similarity=-0.068 Sum_probs=154.7
Q ss_pred CcCCcccccCCCCcc----cCCCCCCCccCCCCcccc-------c---ccCCCCchHHHHHHHHHHhCCCCHHHHHHHHH
Q 001064 40 SMNGNVVNEAGNATS----TENGTSLGIESGAAAGQE-------L---VDGSAMSGEEDRLWNIVKANSSDFSAWTALLE 105 (1167)
Q Consensus 40 ~~~g~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~-------~---~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~ 105 (1167)
.+.+..+.|+..+.. +...+|.......-...+ + .....++++++.++++++.+|.+..+|..++.
T Consensus 76 ~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 76 DLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp TCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 345567778877777 666666643221111110 0 01134667777888889999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 106 ETEKLAQDNIVKIRRVYDAFLAEFPLC---------------YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 106 ~~~~~~~~~~~~ar~~ye~~l~~~P~~---------------~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
.+.+. +++++|+..|+++|..+|.+ ..+|..++.++.+.|++++|+..|+++|.+.|.+..+|
T Consensus 156 ~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 233 (336)
T 1p5q_A 156 VYFKE--GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 233 (336)
T ss_dssp HHHHH--TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 99874 89999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHH-HHHHHHHHh
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRV-AMIYTRILE 233 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A-~~iy~r~l~ 233 (1167)
+.++..+. ..+++++|+..|++++...|. ...+|..+.......++++++ +.+|++++.
T Consensus 234 ~~lg~~~~-~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 234 SRRGEAHL-AVNDFELARADFQKVLQLYPN---NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 789999999999999996655 478899999999999999888 667877754
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-11 Score=124.30 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=68.1
Q ss_pred CccEEEEecCC-CCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++|||+||| +.+|+++|+++|++||.|.+|+| +++ .+|||||+|.+.++|.+||+. ||..|.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i-~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKF-MKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEE-CTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEE-ecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46899999999 89999999999999999999875 322 379999999999999999986 99999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8754
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.7e-11 Score=126.55 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=71.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|...
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDM-SWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-CCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEE-eecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4689999999999999999999999999999875 56777899999999999999999999985 899999999999876
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 544
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=99.14 E-value=8.5e-11 Score=120.76 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=69.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++|+++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE------CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe------cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 46899999999999999999999999988752 55788999999999999999999986 999999999999999
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-11 Score=124.35 Aligned_cols=82 Identities=12% Similarity=0.270 Sum_probs=73.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++|+++|+++|+.||.|.. +.+.+..+|+++|||||+|.+.++|.+||+.+|..|+|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 35799999999999999999999999999876 3356667889999999999999999999987999999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
.++.
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-10 Score=111.34 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=95.9
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
.|+++++ ++|.+...|..++..+...|++++|+..|++++..+|.++.+|+.++.++...|++++|+..|++
T Consensus 6 ~l~~al~--------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 6 TLAMLRG--------LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp ---CCTT--------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHc--------CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3666666 78888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
++.+. |+++.+|+.++.++...|++++|+..|+++ ++++|++...+
T Consensus 78 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~ 123 (142)
T 2xcb_A 78 GALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSA-RALAAAQPAHE 123 (142)
T ss_dssp HHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTCGGGH
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCcchH
Confidence 88876 788888888888888888888888888887 66677665443
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=117.94 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=70.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
..++|||+|||..+++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+| ++|+|+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNI-LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 3589999999999999999999999999999875 56777889999999999999999999986 8999987 899998
Q ss_pred ec
Q 001064 1107 ER 1108 (1167)
Q Consensus 1107 ~~ 1108 (1167)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 74
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-10 Score=123.98 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1106 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V~ 1106 (1167)
.++++|||+|||.++++++|+++|++||.|.+|++. .++ +|||||+|.+.++|.+||.. +|..|+ |+.|+|+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~-~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe-cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 457899999999999999999999999999998753 222 58999999999999999986 899999 9999999
Q ss_pred ecc
Q 001064 1107 ERR 1109 (1167)
Q Consensus 1107 ~~r 1109 (1167)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=127.10 Aligned_cols=206 Identities=11% Similarity=-0.034 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhcC-----------
Q 001064 324 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY-------LDFIERDGDFNKVVKLYERCLIACA----------- 385 (1167)
Q Consensus 324 ~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y-------~~~~e~~g~~~~a~~~yeral~~~p----------- 385 (1167)
...++..|+..|.+++. ++|...+.|..+ +..+....+..+++..+.+.+...|
T Consensus 18 ~~~d~~~A~~~F~~a~~--------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITN--------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHH--------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 36788899999999998 899999999999 6787888888889999999998443
Q ss_pred CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001064 386 NY----------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP 455 (1167)
Q Consensus 386 ~~----------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 455 (1167)
.+ .++++.|+..|...|++++|+.+|..++... |... .++..+.++.+.+++++|+..|+++ .. .|
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a-~~-~~ 165 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSA-GK-WP 165 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTG-GG-CS
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHh-hc-cC
Confidence 23 5688889999999999999999999888766 6666 8888999999999999999999987 44 33
Q ss_pred Ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 456 GL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 456 ~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
+. ..+++.++.++.++|++++|+..|++++.... .+. .+.+++.++..+.. +|+.++|+.+|++++...|+
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~----~P~~~~da~~~~glaL~~-lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA----GEACARAIAWYLAMARRS-QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT----TTTTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSCC
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC----CccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCc
Confidence 33 35789999999999999999999999985431 022 46678888888776 99999999999999999999
Q ss_pred CHHHHHHHHHhHhhCC
Q 001064 532 SKPLLEALIHFESIQS 547 (1167)
Q Consensus 532 ~~~l~~~~~~~e~~~~ 547 (1167)
...+..+........
T Consensus 241 -~~~~~aL~~~~~~~~ 255 (282)
T 4f3v_A 241 -PKVAAALKDPSYRLK 255 (282)
T ss_dssp -HHHHHHHHCTTCCCC
T ss_pred -HHHHHHHhCCCCCCC
Confidence 998888877666543
|
| >1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-11 Score=115.08 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=84.5
Q ss_pred CCcchhHhHHHHHHHHhhhcCcc-----ccc------cccc---CCceEEEEcCCcccc---hhchHHHHHHHhcCCCcc
Q 001064 716 AYPAQVGSYFVGQYYQVLQQQPD-----LVH------QFYS---DASSMIRVDGDSTES---ASSMLDIHSLVISLNFTA 778 (1167)
Q Consensus 716 ~~~~~vg~~Fv~~YY~~l~~~p~-----~l~------~fY~---~~s~~~~~~g~~~~~---~~~~~~i~~~~~~l~~~~ 778 (1167)
..+.+.+..|++.||..||+.+. .|. ++|. ..++.+.|||+.+.. ..+...|.+++..||.+.
T Consensus 23 ~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGnp~~~~~~~~gr~~fqk~w~~lP~Sq 102 (201)
T 1q42_A 23 QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQPIIPSPQEDCKLQFQKKWLQTPLSS 102 (201)
T ss_dssp CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTEECCCCSSCCHHHHHHHHHHTSCCEE
T ss_pred CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCcccccccccccHHHHHHHHHhCCCcc
Confidence 46788999999999999998886 888 7883 334566699998722 145667889999999999
Q ss_pred eeEeeeeccccCC-CceEEEEEEEEEecCccccceeEEEEEEeee
Q 001064 779 IEIKTINSLGSWN-GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 822 (1167)
Q Consensus 779 ~~i~~~d~q~~~~-~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~ 822 (1167)
+.|+++|||+.++ +.++|.|.|.|+.++. ..++|.|+|.|..+
T Consensus 103 HqL~SlDahpIpGq~T~lI~asGkVrFDes-gr~~fgQsf~Lta~ 146 (201)
T 1q42_A 103 HQLTSYDGHLIPGTGTFVVHFSAKVRFDQS-GRNRLGESADLFQE 146 (201)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEEBCS-SCCTTSCCC-----
T ss_pred eeeeeeecceeCCCcEEEEEEeEEEEECCC-CcCcCCCcEEEecc
Confidence 9999999999874 4699999999999986 68999999999866
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-10 Score=107.07 Aligned_cols=108 Identities=12% Similarity=0.202 Sum_probs=90.8
Q ss_pred hCCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHhccCCC--------HHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 128 EFPLCYGYWKKYADHEARVGSM------DKVVEVYERAVQGVTYS--------VDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 128 ~~P~~~~~W~~~a~~e~~~~~~------e~A~~l~eraL~~~P~s--------~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
..|.+++.|..|++++.+.|+. ++.+++|+|++...|.. +-||+.|+.|.. .+|+++||.+|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e--i~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA--IQEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH--HHCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH--hcCHHHHHHHHHH
Confidence 4688888888888888877888 88888888888888763 689999998853 5899999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH
Q 001064 194 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD 240 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~ 240 (1167)
++.. ...| ..+|..|+.||.+++++++||+|+.+++...+...+
T Consensus 86 a~~~-hKkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 86 ARAN-CKKF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHH-CTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHH-hHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 9996 5555 899999999999999999999999999998555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-10 Score=111.53 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=88.1
Q ss_pred HHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 335 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 335 ~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
|++++. ++|.+...|..++..+...|++++|+..|++++..+|.++.+|+.++.++...|++++|+..|+++
T Consensus 10 ~~~al~--------~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 10 IAMLNE--------ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHTT--------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc--------CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666 677777778887777777788888888888888888888888888887777778888888888888
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
+.+. |+++.+|+.++.++...|++++|+..|+++ +++.|+++.
T Consensus 82 l~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~ 124 (148)
T 2vgx_A 82 AVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLA-QELIANXPE 124 (148)
T ss_dssp HHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTCGG
T ss_pred HhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCcCCCc
Confidence 7776 677777777777777777777777777776 566665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=130.25 Aligned_cols=197 Identities=11% Similarity=0.040 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
+...|...+..+...|++++|+..|++++..+|.+..+|..++.++...|++++|...|++++++. |++..+|+.+|.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356788888888899999999999999999999999999999999999999999999999999987 8899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+...|++++|+..|+++ ++++|++...+...+....+. .+............+ ..+.+...++.++ .
T Consensus 82 ~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~i~~~l~~l~---~ 148 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRA-YSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEERRIH------QESELHSYLTRLI---A 148 (281)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCC------CCCHHHHHHHHHH---H
T ss_pred HHHcCCHHHHHHHHHHH-HHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHh------hhHHHHHHHHHHH---H
Confidence 99999999999999998 677776532111111111111 112222222222221 2245666666662 6
Q ss_pred CCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 513 RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
|++++|.+.|+++++..|++..+...+..+.... .+..+.++.+|+++...
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKH--DKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH--HHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 8899999999999999999887777666555443 12356788899888653
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=118.94 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=70.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeee---CcEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQV 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g--~~kg~afV~F~~~~~a~~Al~~-~~~~i~---g~~l 1103 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+| +++|||||+|.+.++|.+|++. ++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINV-LRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4589999999999999999999999999999876 5566666 8999999999999999999986 777665 5678
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
.|.......
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888766543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-10 Score=130.93 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=127.6
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------------PEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---------------~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
+++.....|..++..+.+.|++++|+..|++++..+|.+ ..+|+.++.++...|++++|+..|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566778899999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhh
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA-FSLYEQAIAIE 488 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A-~~~~~kAl~~~ 488 (1167)
++.+. |++..+|+.++.++...|++++|+..|+++ ++++|++..+|..++.++.++|+++++ ..+|++++...
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKV-LQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99987 889999999999999999999999999998 789999999999999999999999888 56778777654
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=116.96 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=69.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE--eEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ--VYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~--l~V~~ 1107 (1167)
.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+. |+|.+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEE-EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 478999999999999999999999999999876 55677889999999999999999999986 899999975 78876
Q ss_pred c
Q 001064 1108 R 1108 (1167)
Q Consensus 1108 ~ 1108 (1167)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=124.01 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=67.6
Q ss_pred CCCccEEEEecCCCCC---------CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001064 1028 EGEVKSVYVRNLPSTV---------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1097 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~ 1097 (1167)
+...++||||||+..+ ++++|+++|++||.|.+|+|. .+||||||+|.+.++|+.|++. +|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-------~~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-------ESKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-------GGGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-------CCCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4467999999999998 799999999999999998753 2579999999999999999987 8888
Q ss_pred e------------eCcEeEEEeccCCCC
Q 001064 1098 L------------AGRQVYIEERRPNTG 1113 (1167)
Q Consensus 1098 i------------~g~~l~V~~~r~~~~ 1113 (1167)
| +|+.|.|.+++..+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 8 899999999987543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-09 Score=107.63 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|...+..+...|++++|+..|++++..+|.+..+|+.++.++...|++++|+..|++++.+. |.++.+|+.++.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46688888888899999999999999999999999999999999999999999999999999987 78899999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAI--IKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~--~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
...|++++|+..|+++ ++++|++..+| +..+..+.+.|++++|+.+++++....+
T Consensus 92 ~~~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETV-VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 9999999999999998 78899999888 4455557788999999999998887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-09 Score=119.44 Aligned_cols=235 Identities=9% Similarity=0.015 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCC
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANY 387 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g-~~~~a~~~yeral~~~p~~ 387 (1167)
+.....+..+..+....+..++++..++++|. ++|.+..+|..-...+...+ ++++++.+++++|..+|.+
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~--------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn 122 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVR--------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS 122 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence 34444555555566666666789999999998 89999999999999888888 5999999999999999999
Q ss_pred HHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhhcCCCh
Q 001064 388 PEYWIRYVLCMEAS-G-SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID--------GARAAYQLVHTETSPGL 457 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~-g-~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~--------~A~~~~~~a~~~~~P~~ 457 (1167)
..+|..-..++... + +.++++..+.++++.. |++..+|....-++...|.++ ++++.++++ ++.+|.|
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~-I~~dp~N 200 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM-LRVDGRN 200 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHCTTC
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH-HHhCCCC
Confidence 99999999999887 7 8899999999999987 889999999988888877777 899999998 7889999
Q ss_pred HHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH--------------
Q 001064 458 LEAIIKHANMERRLGN-------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE-------------- 516 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~-------~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~-------------- 516 (1167)
..+|..+..+..++++ +++++++++++|...|++ ..+|..+..++.. .|+-.
T Consensus 201 ~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n------~SaW~Ylr~Ll~~-~~~~~~~~~~~~~~~~~~~ 273 (349)
T 3q7a_A 201 NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN------VSAWNYLRGFLKH-FSLPLVPILPAILPYTASK 273 (349)
T ss_dssp HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCCSGGGHHHHGGGTC--
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCCccccccccccccccc
Confidence 9999999999888886 799999999999999754 5578766655544 44320
Q ss_pred ---HHHHHHHHHHhhc---------CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001064 517 ---KARQILVDSLDHV---------QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 563 (1167)
Q Consensus 517 ---~Ar~i~~kal~~~---------p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral 563 (1167)
.--.+.+-+++.. +.+...+..++++....++ .+.+..+|+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~---~~~a~~~~~~l~ 329 (349)
T 3q7a_A 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR---VDDAAKVFEKLS 329 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 0112333333332 3566777777766655554 455777777754
|
| >2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-10 Score=101.31 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=62.3
Q ss_pred ccEEEEecCC-------CCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEe
Q 001064 1031 VKSVYVRNLP-------STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV 1103 (1167)
Q Consensus 1031 ~~~l~V~nlp-------~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l 1103 (1167)
.++|-|.-.. .++++++|+++|++||.|.+|.|. ++++|||||+|.+.++|..||.. +..+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS------SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE------SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc------cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeE
Confidence 3566666543 468999999999999999997653 35789999999999999999987 455689999
Q ss_pred EEEeccCCCC
Q 001064 1104 YIEERRPNTG 1113 (1167)
Q Consensus 1104 ~V~~~r~~~~ 1113 (1167)
+|+++++++.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999887643
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=127.43 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=71.0
Q ss_pred CCccEEEEecCCCCCCHHHHH----HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1103 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l 1103 (1167)
.+.++|||+|||.++|+++|+ ++|++||.|.+|.+ + .+|+++|||||+|.+.++|.+||+. +|..|.|+.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~-~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILV-S---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEE-c---CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 357999999999999999977 89999999999764 2 2678999999999999999999966 8999999999
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
+|++++.+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999887644
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-09 Score=111.32 Aligned_cols=177 Identities=11% Similarity=-0.025 Sum_probs=147.2
Q ss_pred HHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHH
Q 001064 330 SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG----SMD 405 (1167)
Q Consensus 330 ~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g----~~e 405 (1167)
+|+..|+++++ . .+...+..++.++...+++++|+.+|++++.. .+++.++.++.++.. + +++
T Consensus 4 eA~~~~~~aa~--------~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAE--------A--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHH--------T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHH--------C--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHH
Confidence 35556777765 2 34678999999998899999999999999875 689999999998876 6 899
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCC--ChHHHHHHHHHHHHH----cCCHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLVHTETSP--GLLEAIIKHANMERR----LGNLE 475 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a~~~~~P--~~~~~~~~~a~~e~r----~g~~e 475 (1167)
+|+..|+++++ +.++..++.++.++.. .+++++|+..|+++ .+..+ ++..+++.++.++.. .++++
T Consensus 71 ~A~~~~~~A~~---~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 71 QARQLAEKAVE---AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDA-ARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH-TSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH-HHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999976 5688999999999987 88999999999998 66676 358899999999988 78999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhhcC
Q 001064 476 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-----NAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 476 ~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g-----~~~~Ar~i~~kal~~~p 530 (1167)
+|+.+|+++++.. +. +..+..++.++..-.| ++++|+..|++|++.-.
T Consensus 147 ~A~~~~~~A~~~~-~~------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSLS-RT------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHTS-CT------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC-CC------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999882 21 3467778877654233 89999999999998743
|
| >2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.7e-10 Score=103.75 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCC-----------HHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001064 1030 EVKSVYVRNLPSTVT-----------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1097 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~ 1097 (1167)
+.++|+|+||..... +++|+++|++||.|.+|. +.++ .++|||||+|.+.++|.+|+.. +|..
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~--i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLL--LFDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEE--EETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEE--EecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 579999999944332 589999999999999974 3443 3789999999999999999976 8999
Q ss_pred eeCcEeEEEeccCCCC
Q 001064 1098 LAGRQVYIEERRPNTG 1113 (1167)
Q Consensus 1098 i~g~~l~V~~~r~~~~ 1113 (1167)
|+|+.|+|+++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999887543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-09 Score=109.56 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=113.1
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH-HHHcCCH--HHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF-KEQNGDI--DGA 442 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~-~e~~g~~--~~A 442 (1167)
..|++++|+..|++++...|.+..+|+.++.++...|++++|+..|++++.+. |+++.+|+.++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45788999999999999999999999999999999999999999999999988 7889999999999 7789998 999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 443 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 443 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
+..|+++ ++++|++..+|+.++.++...|++++|+.+|++++...|.+
T Consensus 101 ~~~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKA-LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHH-HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999998 78899999999999999999999999999999999998753
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=116.07 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=67.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---CcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~---g~~l~V 1105 (1167)
..++|||+|||.++|+++|+++|++||.|.++.+ +++ .+|+++|||||+|.+.++|.+|++. +|..+. |+.|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI-LRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE-EEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 4589999999999999999999999999999875 444 3588999999999999999999976 887666 489999
Q ss_pred Eec
Q 001064 1106 EER 1108 (1167)
Q Consensus 1106 ~~~ 1108 (1167)
.++
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 886
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-08 Score=115.52 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LL 458 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~ 458 (1167)
.+.+.+.++...|++++|...|.+++.+.... ...++...+.++...|++++|+..|+++ +++.+. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A-l~l~~~~g~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA-SVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH-HHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHHHHcCCHHHHH
Confidence 34444566778899999999999999987321 2457778889999999999999999998 444321 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH-----
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK----- 533 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~----- 533 (1167)
.+|...+.++.. |++++|+.+|++|+.+.+..........++..++.++.. .|++++|+.+|+++++..+.+.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 568888888888 999999999999999986432222234578888999776 9999999999999999876542
Q ss_pred -HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001064 534 -PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 601 (1167)
Q Consensus 534 -~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v 601 (1167)
..+...+......++ .+.+..+|++++ ..+..... . ...++...+... ..||.+....+
T Consensus 195 ~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~~~~~---~-e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPGFSGS---E-DCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTTSTTS---H-HHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCCCCCC---H-HHHHHHHHHHHH-HhcCHHHHHHH
Confidence 244455555555555 667899999999 76654321 1 112333333333 35776665553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.8e-09 Score=100.66 Aligned_cols=113 Identities=10% Similarity=-0.067 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|...+..+.+.|++++|+..|++++..+|.+..+|..++.++...|++++|+..|++++.+. |+++.+|+.++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777777777777777777777777777766 66777777777777
Q ss_pred HHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHHHHH
Q 001064 434 EQNGDIDGARAAYQLVHTETS------PGLLEAIIKHANME 468 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a~~e 468 (1167)
...|++++|+..|+++ ++++ |++..++..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~a-l~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAA-RTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH-HHhCcccCCchhHHHHHHHHHHHH
Confidence 7777777777777776 5666 66666665555443
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-10 Score=121.47 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeE----eeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV----FVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i----~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
..++|||+|||.++|+++|+++|++||.|..+.+ .+.+...++++|||||+|.+.++|.+||..+|..|+|+.|+|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEE
Confidence 3599999999999999999999999964433200 122223456789999999999999999966999999999999
Q ss_pred EeccCCC
Q 001064 1106 EERRPNT 1112 (1167)
Q Consensus 1106 ~~~r~~~ 1112 (1167)
.+++...
T Consensus 83 ~~~~~~~ 89 (198)
T 2yh0_A 83 RRPHDYQ 89 (198)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9877653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.8e-09 Score=100.09 Aligned_cols=124 Identities=14% Similarity=0.014 Sum_probs=113.3
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
.++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+..+++++... |+++.+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 85 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGR 85 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHH
Confidence 4566678899999988899999999999999999999999999999999999999999999999999987 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
++.++...|++++|+..|+++ +++.|++..+|..++.++.++|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKA-LELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-HhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998 788999999999999888888765
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-10 Score=126.36 Aligned_cols=81 Identities=23% Similarity=0.427 Sum_probs=71.2
Q ss_pred CccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCC-CcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRK-DVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~-~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
.+++|||+|||.+ +|+++|+++|++||.|..|.| +++.. ||+++|||||+|.+.++|.+|+..+|..|+|+.|+|.+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~ 287 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINI-PAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSL 287 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEEC-CSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEE-EecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEE
Confidence 4689999999999 999999999999999999875 33443 58999999999999999999994489999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++++
T Consensus 288 a~~k 291 (292)
T 2ghp_A 288 ADKK 291 (292)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9876
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-09 Score=101.41 Aligned_cols=123 Identities=14% Similarity=0.020 Sum_probs=110.5
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
..+.....|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|+..|++++.+. |.+..+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 4566788899999999999999999999999999999999999999999989999999999999999987 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
++.++...|++++|+..|+++ ++++|++..+|..++.++.++|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKA-LDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999998 67899998888888888776654
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=9.4e-10 Score=118.33 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=68.7
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++|||+|||. ++++++|+++|++||.|.+|.+ ++++ +|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i-~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEE-CCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-EECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 569999999999 9999999999999999999765 3332 68999999999999999975 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++.+.
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 88653
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=99.00 E-value=8.3e-10 Score=123.01 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=73.3
Q ss_pred CccEEEEecCCCCC-CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTV-TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~-t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..++|||+|||.++ |+++|+++|++||.|.++.| +++. +|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQL-ACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEE-EECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEE-EECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 46899999999995 99999999999999999875 3343 789999999999999999999986 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 987643
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=122.08 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=74.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFL-VYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEE-EeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 479999999999999999999999999999875 66777899999999999999999999965 8999999999999987
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=99.00 E-value=9e-10 Score=121.02 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.+ . +++|||||+|.+.++|.+|+.. +|..|+|+.|+|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-N------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-e------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 35689999999999999999999999999999764 2 3579999999999999999985 99999999999998
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8653
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=6.6e-10 Score=116.65 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=67.6
Q ss_pred ccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+++|||+|||. ++++++|+++|++||.|.+|.+ ++++ +|||||+|.+.++|.+|+.. +|..|+|+.|+|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i-~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEEC-STTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-EeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 58999999999 9999999999999999999764 3222 68999999999999999985 999999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+...
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-08 Score=101.47 Aligned_cols=131 Identities=12% Similarity=0.004 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
....|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...|.+..+|..++.
T Consensus 12 ~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFK--AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35778899998887 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH--HHHHhhhHHHHHHHHHHHH
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE--YEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~--~e~~~~~~~~A~~iy~r~l 232 (1167)
.+. ..|++++|+..|++++...+.+ ..+|..+.. .....+++++|...|.++.
T Consensus 90 ~~~-~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNM-ALGKFRAALRDYETVVKVKPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 988 7899999999999999976654 556644443 3566788888888887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.6e-09 Score=109.45 Aligned_cols=136 Identities=10% Similarity=-0.010 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
++..+..+...|++++|+..|++++ +.++.+|+.++.++...|++++|+..|+++ ++++|++..+|+.++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRS-INRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHH
Confidence 4566666777888888888888774 236778888888888888888888888887 67788888888888988888
Q ss_pred cCCHHHHHHHHHHHHHhhhCCC----------ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 471 LGNLEDAFSLYEQAIAIEKGKE----------HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 471 ~g~~e~A~~~~~kAl~~~~~~~----------~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+|++++|+..|++++...+.+. ..+..+.++..++.++.. .|++++|+..|+++++..|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999998876543 234456788899999776 999999999999999999976
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=98.99 E-value=8.7e-10 Score=112.74 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=64.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcC----C-------CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNF----G-------RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i 1098 (1167)
+.++|||+|||.++|+++|+++|++| | .|.++. .++++|||||+|.+.++|.+|+..+|..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~-------~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-------INQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE-------EETTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE-------ecCCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 46999999999999999999999999 5 444432 34568999999999999999996699999
Q ss_pred eCcEeEEEeccCC
Q 001064 1099 AGRQVYIEERRPN 1111 (1167)
Q Consensus 1099 ~g~~l~V~~~r~~ 1111 (1167)
+|+.|+|...+..
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.2e-09 Score=99.04 Aligned_cols=102 Identities=10% Similarity=0.023 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHH
Q 001064 94 SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 173 (1167)
Q Consensus 94 P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y 173 (1167)
|.+.+.|..++..+.. .+++++|+..|++++..+|.+..+|..++.++.+.|++++|+..|+++|...|.+...|+.+
T Consensus 1 p~~a~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYFT--KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4456789999998887 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhc
Q 001064 174 CIFAINTYGDPETIRRLFERGLAYV 198 (1167)
Q Consensus 174 a~~~~~~~~~~~~Ar~~feral~~~ 198 (1167)
+..+. ..|++++|+..|++++...
T Consensus 79 g~~~~-~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 79 ATAQI-AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhCHHHHHHHHHHHHHhC
Confidence 99988 6899999999999999876
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-08 Score=110.07 Aligned_cols=174 Identities=11% Similarity=0.048 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----C
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----L 422 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~------~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~ 422 (1167)
...|...+..+...|++++|+..|++++...+.... .++..+.++...|++++|...|++++.+.... .
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 455666677778899999999999999998766543 34456666777889999999999999865321 1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHT--ETSPGL----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~--~~~P~~----~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
..++...+.++...|++++|...|++++. +..|++ ..++...+.++.++|++++|+.+|++++.+.+.......
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788899999999999999999999841 334552 268899999999999999999999999998754333344
Q ss_pred hHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhh
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKA-RQILVDSLDH 528 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~A-r~i~~kal~~ 528 (1167)
...++..+|.++.. .|++++| ...|++|+..
T Consensus 235 ~~~~~~~lg~~y~~-~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRK-LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHH
Confidence 56788889988776 9999999 8889999864
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.8e-09 Score=105.38 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=95.5
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 429 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~ 429 (1167)
++.+...|...+..+...|++++|+.+|++++..+|.+..+|+.++.++...|++++|+..|++++.+. |++..+|+.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455677888888888888889999999999998888888888888888888888888888888888877 7788888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 430 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 430 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
+.++...|++++|+..|+++ ++++|++...|+..+
T Consensus 86 g~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG-IEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHHSSSCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH-HHhCCCchHHHHHHH
Confidence 88888888888888888887 677888877665544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=133.37 Aligned_cols=171 Identities=9% Similarity=-0.007 Sum_probs=150.1
Q ss_pred HHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 328 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD----------FNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 328 ~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~----------~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
.++|+..++++|. ++|+...+|..-...+...++ +++++..|++++..+|.+..+|..-+-+
T Consensus 45 ~eeal~~~~~~l~--------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 45 DESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp SHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3567899999998 899999999998888877777 8999999999999999999999999999
Q ss_pred HHHcC--CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---
Q 001064 398 MEASG--SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG-DIDGARAAYQLVHTETSPGLLEAIIKHANMERRL--- 471 (1167)
Q Consensus 398 l~~~g--~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g-~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~--- 471 (1167)
+...+ ++++++..+++++++. |++..+|...+.++...| .++++++.++++ ++.+|.+..+|..++.+..++
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~-I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL-ITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT-TTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHH-HHHCCCCccHHHHHHHHHHhhccc
Confidence 99999 6799999999999988 889999999999999999 899999999998 789999999999999888775
Q ss_pred -----------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001064 472 -----------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515 (1167)
Q Consensus 472 -----------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 515 (1167)
+.++++++++.+||...|.+ ..+|..+..++.. .++.
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~------~saW~y~~~ll~~-~~~~ 242 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGR-AEPH 242 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC------SHHHHHHHHHHSC-CCCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHhc-CCCc
Confidence 55799999999999999754 4578766665443 4543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-08 Score=123.11 Aligned_cols=169 Identities=7% Similarity=-0.048 Sum_probs=149.2
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC-
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNG- 437 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~----------~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g- 437 (1167)
-.++|+.+|+++|..+|.+..+|..-+.++...++ +++++..++++++.+ |++..+|...+-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34688999999999999999999999999988887 899999999999988 899999999999999999
Q ss_pred -CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH----
Q 001064 438 -DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---- 511 (1167)
Q Consensus 438 -~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---- 511 (1167)
++++++..++++ ++++|.+..+|..++.+..+.| .++++++.++++|+.++.+ ...|.+.+.++...
T Consensus 123 ~~~~~el~~~~k~-l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n------~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 123 PNWARELELCARF-LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC------HHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHH-HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC------ccHHHHHHHHHHhhcccc
Confidence 779999999998 7899999999999999999999 8999999999999998653 56887777776652
Q ss_pred ---------hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 512 ---------SRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 512 ---------~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.+.++++.+++.+|+..+|++...|..+..+...
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 1568999999999999999999999654444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=103.15 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=100.8
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
.++.+.+.|+.++..+.. .+++++|+..|++++..+|.+..+|..++.++.+.|++++|+..|+++|...|.+..+|+
T Consensus 6 ~~~~~a~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMA--RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp SCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 356678899999999987 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDY 202 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~ 202 (1167)
.++..+. ..|++++|+..|++++...|.+.
T Consensus 84 ~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 84 RLGLARF-DMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHH-HccCHHHHHHHHHHHHHhCCCch
Confidence 9999998 78999999999999999887763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-08 Score=110.46 Aligned_cols=175 Identities=11% Similarity=0.082 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH-----HHH-HHHHHHHcCCHHHHHHHHHHHHHhhhccC-----
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY-----WIR-YVLCMEASGSMDLAHNALARATHVFVKRL----- 422 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~-----w~~-ya~~l~~~g~~e~A~~vl~rA~~~~~p~~----- 422 (1167)
...+...+..+...+++++|...|++++...+..++. |+. .+.++...+++++|+..|++++.+.....
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 3444445666678899999999999999987777662 333 56666667899999999999999653222
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhh------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHT------ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~------~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
..++...+.++...|++++|...|++++. ...+....++..++.++.++|++++|+.+|++++++.+.......
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 23688899999999999999999999842 122334557899999999999999999999999998875544455
Q ss_pred hHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhc
Q 001064 497 LPMLYAQYSRFLHLVSR-NAEKARQILVDSLDHV 529 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g-~~~~Ar~i~~kal~~~ 529 (1167)
...++..+|.++.. .| ++++|...|++|+...
T Consensus 235 ~~~~~~~lg~~~~~-~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 235 IGQLYYQRGECLRK-LEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHH
Confidence 57789999999776 88 5799999999998643
|
| >3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-09 Score=100.44 Aligned_cols=80 Identities=24% Similarity=0.373 Sum_probs=65.9
Q ss_pred CccEEEEecC--CCCCC--------HHHHHHHHhcCCCceeeeEeeecCCC--cccccEEEEEECCHHHHHHHHHh-CCC
Q 001064 1030 EVKSVYVRNL--PSTVT--------AFEIEEEFQNFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPI 1096 (1167)
Q Consensus 1030 ~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~--g~~kg~afV~F~~~~~a~~Al~~-~~~ 1096 (1167)
+.+.|.+.|+ |.++. +++|++.|++||.|.+|.| .+++.+ ++++|||||+|.+.++|.+|+.. ||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i-~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI-PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEEC-CCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEE-eccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4588999998 33443 3699999999999999875 444433 46899999999999999999977 999
Q ss_pred eeeCcEeEEEeccC
Q 001064 1097 QLAGRQVYIEERRP 1110 (1167)
Q Consensus 1097 ~i~g~~l~V~~~r~ 1110 (1167)
.++||.|+|++...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-08 Score=93.92 Aligned_cols=113 Identities=10% Similarity=0.009 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|...+..+...|++++|+..|++++...|.+..+|..++.++...|++++|...+++++... |.++.+|..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46688888888888999999999999999999999999999998888999999999999999877 77888999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
...|++++|+..|+++ ++++|++..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG-LKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHH-HTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH-HHcCCCCHHHHHHHHHhh
Confidence 9999999999999998 788898888888777664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-08 Score=106.62 Aligned_cols=129 Identities=13% Similarity=0.012 Sum_probs=116.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
+...+..+...|++++|+..|++++ ..++.+|+.++.++...|++++|+..|++++.+. |++..+|+.++.++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 4556667778999999999999996 3478999999999999999999999999999987 88999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 437 GDIDGARAAYQLVHTETSPGLL----------------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~----------------~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
|++++|+..|+++ +++.|++. .+|+.++.++..+|++++|+..|++++...|.
T Consensus 85 ~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEA-LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHH-HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHH-HHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999998 67666654 89999999999999999999999999999864
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=97.30 Aligned_cols=123 Identities=10% Similarity=-0.007 Sum_probs=106.4
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 91 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 91 ~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
..+|.+...|+.++..+... +++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...|.+...|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH
Confidence 45788999999999999874 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHH
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYL--SFPLWDKYIEYEY 216 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~--s~~lw~~y~~~e~ 216 (1167)
+.++..+. ..|++++|+..|++++...+.+.. ...++..+.....
T Consensus 81 ~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 81 FFLGQCQL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 99999998 789999999999999997665221 3456655555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-09 Score=111.29 Aligned_cols=133 Identities=9% Similarity=0.016 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP----------------EYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~----------------~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
+.....|...+..+...|++++|+..|++++..+|.++ .+|..++.++...|++++|+..++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44567788889888899999999999999999988887 89999999999999999999999999
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF-SLYEQAI 485 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~-~~~~kAl 485 (1167)
+.+. |++..+++.++.++...|++++|+..|+++ ++++|++..++..++.+...+++.+++. ..|.+.+
T Consensus 115 l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 115 LKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA-ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987 788999999999999999999999999998 7889999999998888887777766655 3444433
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=115.08 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=60.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCc--eeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRI--KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR 1101 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i--~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~ 1101 (1167)
++++|||+|||+++|+++|+++|++||.| .++++ +.++ |..+|||||+|.+.++|.+||.. ||..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~-~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV-FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE-CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 46899999999999999999999999999 77654 3332 45679999999999999999987 89999987
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=116.75 Aligned_cols=192 Identities=10% Similarity=-0.005 Sum_probs=156.9
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhhhcc-----C-----------
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRY-------VLCMEASGSMDLAHNALARATHVFVKR-----L----------- 422 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~y-------a~~l~~~g~~e~A~~vl~rA~~~~~p~-----~----------- 422 (1167)
..++...|+..|.+++..+|...++|+.+ +..+...+...+++..+.+++.+.+.. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46899999999999999999999999999 788888888888889999999865311 1
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCch-
Q 001064 423 ----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL- 497 (1167)
Q Consensus 423 ----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~- 497 (1167)
..+++.++.++...|++++|+.+|+.+ ....|++. .++.++.+..+.+++++|+..|++++.... +..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~-~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-----~~~~ 170 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAA-PVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-----KFLA 170 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSS-CCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-----HHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-----cccH
Confidence 467888999999999999999999997 67789888 888899999999999999999997766431 111
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc--CC-CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001064 498 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHV--QL-SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 568 (1167)
Q Consensus 498 ~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~--p~-~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~ 568 (1167)
..+++.++..+.. .|++++|+..|++++... |. ....+...+.....+|. .+.++.+|++++...|+
T Consensus 171 ~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc
Confidence 2477888888776 999999999999998654 54 44455556666666665 67799999999988775
|
| >1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 | Back alignment and structure |
|---|
Probab=98.92 E-value=5e-10 Score=103.84 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=60.0
Q ss_pred EecCCCCCCHHHHHHHH------------hcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE
Q 001064 1036 VRNLPSTVTAFEIEEEF------------QNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1102 (1167)
Q Consensus 1036 V~nlp~~~t~~~l~~~F------------~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~ 1102 (1167)
+.||+..+++++|+++| ++||.|.+|.| +++ .+|+++|||||+|.+.++|.+|+.. ||..++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i-~~~-~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEE-EeC-CCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56777888888777666 99999999875 334 3578999999999999999999986 999999999
Q ss_pred eEEEec
Q 001064 1103 VYIEER 1108 (1167)
Q Consensus 1103 l~V~~~ 1108 (1167)
|+|+++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999874
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=118.01 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=70.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeee---CcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLA---GRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~---g~~l~ 1104 (1167)
++++|||+|||..+|+++|+++|++||.|.+|.| +.+ .+|+++|||||+|.+.++|.+||.. ++..+. |+.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVV-VVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEe-eeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 3579999999999999999999999999999876 444 5889999999999999999999987 355554 89999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|+++.+..
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99887643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=9.8e-09 Score=114.09 Aligned_cols=167 Identities=9% Similarity=-0.054 Sum_probs=131.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
|.....|+..|..+...|++++|+..|++++... |+++.+|..++.++...|++++|+..|+++ ++++|++..+|+.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA-LELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCCHHHHHHH
Confidence 4567889999999999999999999999999987 889999999999999999999999999998 78999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
+.++..+|++++|+..|++++.+.|++..... ..++..+ + ..++...........+.+..+...+..|..
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 148 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSAL-----R----IAKKKRWNSIEERRIHQESELHSYLTRLIA 148 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SHHHHHH-----H----HHHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHH-----H----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999985421111 1222222 1 233344444444567777777766666542
Q ss_pred hCCChhHHHHHHHHHHHHhhcCCC
Q 001064 545 IQSSPKQIDFLEQLVDKFLMSNSD 568 (1167)
Q Consensus 545 ~~~~~~~~~~ar~l~eral~~~~~ 568 (1167)
.+.+.+...|++++...++
T Consensus 149 -----~~~~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 149 -----AERERELEECQRNHEGHED 167 (281)
T ss_dssp -----HHHHHHHTTTSGGGTTTSC
T ss_pred -----HHHHHHHHHHHhhhccccc
Confidence 2355667777888776554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-08 Score=98.16 Aligned_cols=121 Identities=10% Similarity=-0.003 Sum_probs=100.8
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
..|.+..+|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...+++++|+++|++++...|.+..+|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQ--KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHH--TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 357788899999998876 478899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 218 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~ 218 (1167)
.++..+. ..+++++|+..|++++...+.+ ..+|..+...+..+
T Consensus 89 ~la~~~~-~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 89 RKAAALE-AMKDYTKAMDVYQKALDLDSSC---KEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHCGGG---THHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHh
Confidence 9988888 6789999999999999865543 45666666555443
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=120.38 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=67.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||.++|+++|+++|+.||.|.+|.| +++.. + ++|||||+|.+.++|.+||+.+|..|+|+.|.|..
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~-~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDV-ADSLK-K-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEE-EECTT-S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCC-C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 346799999999999999999999999999999875 44443 2 57999999999999999998799999999999987
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
...
T Consensus 115 ~~~ 117 (292)
T 2ghp_A 115 LTE 117 (292)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=7.8e-08 Score=106.42 Aligned_cols=205 Identities=9% Similarity=0.036 Sum_probs=154.0
Q ss_pred HHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHH
Q 001064 331 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA--NYPEYWIRYVLCMEASGSMDLAH 408 (1167)
Q Consensus 331 a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p--~~~~~w~~ya~~l~~~g~~e~A~ 408 (1167)
++..|++.+.. ++.....+...+..+...|++++|+.++.++|...+ .+.+++...+.++...|+.+.|+
T Consensus 85 a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 67778888762 222234456777788889999999999999998876 88899999999999999999999
Q ss_pred HHHHHHHHhhhc------cChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHH
Q 001064 409 NALARATHVFVK------RLPEIHLFAARFKEQNG--DIDGARAAYQLVHTETSPG--LLEAIIKHANMERRLGNLEDAF 478 (1167)
Q Consensus 409 ~vl~rA~~~~~p------~~~~l~~~~a~~~e~~g--~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~ 478 (1167)
+.+++..+.. | +...+.+.-+.+....| ++.+|..+|+++ .+..|+ ...+++. ++.++|++++|.
T Consensus 157 k~l~~~~~~~-~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El-~~~~p~~~~~~lLln---~~~~~g~~~eAe 231 (310)
T 3mv2_B 157 TIFDNYTNAI-EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL-SQTFPTWKTQLGLLN---LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH-HTTSCSHHHHHHHHH---HHHHHTCHHHHH
T ss_pred HHHHHHHhcC-ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhCCCcccHHHHHH---HHHHcCCHHHHH
Confidence 9999998876 4 34444444453344444 999999999997 676787 2333333 778899999999
Q ss_pred HHHHHHHHhhhCC--C--ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001064 479 SLYEQAIAIEKGK--E--HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 554 (1167)
Q Consensus 479 ~~~~kAl~~~~~~--~--~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ 554 (1167)
.+++++++..|.- . ..+.++.++.+.+.+.+. .|+ +|.++++++.+..|+++.+.+ +..
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~-lgk--~a~~l~~qL~~~~P~hp~i~d--------------~~~ 294 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM-QGL--DTEDLTNQLVKLDHEHAFIKH--------------HQE 294 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH-TTC--TTHHHHHHHHHTTCCCHHHHH--------------HHH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH-hCh--HHHHHHHHHHHhCCCChHHHH--------------HHH
Confidence 9999888775320 0 013458888788777666 786 999999999999999987762 333
Q ss_pred HHHHHHHHhhc
Q 001064 555 LEQLVDKFLMS 565 (1167)
Q Consensus 555 ar~l~eral~~ 565 (1167)
....|+++...
T Consensus 295 k~~~Fd~~~~k 305 (310)
T 3mv2_B 295 IDAKFDELVRK 305 (310)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 45667776554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-08 Score=97.24 Aligned_cols=124 Identities=13% Similarity=0.066 Sum_probs=107.6
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 91 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 91 ~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
+.+|.+...|..++..+... +++++|...|++++..+|.+..+|..++.++...|++++|+.+|++++...|.+..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKV--ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcchhhhHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 35677888999999998874 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE 220 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~ 220 (1167)
..++..+. ..+++++|+..|++++...+. ...+|..++......++
T Consensus 84 ~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALS-SLNKHVEAVAYYKKALELDPD---NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHhc
Confidence 99999888 689999999999999996554 46777777776665544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-08 Score=92.99 Aligned_cols=116 Identities=22% Similarity=0.262 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|..++..+...|++++|+.+|++++...|.+..+|..++.++...|++++|..+|++++... |.++.+|..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 56788888888888889999999999988888888888888888888888888888888888876 67788888888888
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
...|++++|+..|+++ ++++|++..++..++.+..+.
T Consensus 88 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA-LELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHhc
Confidence 8888888888888887 677888888887777666544
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-09 Score=114.70 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=67.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V~ 1106 (1167)
++++|||+|||.++++++|+++|++|| .|..|.+ +.+ .+|||||+|.+.++|.+|+.. +|..|+ |+.|+|.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i-~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE-CSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE-EEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 469999999999999999999999999 9999764 221 468999999999999999986 899999 9999999
Q ss_pred eccCC
Q 001064 1107 ERRPN 1111 (1167)
Q Consensus 1107 ~~r~~ 1111 (1167)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98864
|
| >3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A | Back alignment and structure |
|---|
Probab=98.89 E-value=4.3e-09 Score=99.59 Aligned_cols=79 Identities=29% Similarity=0.364 Sum_probs=66.2
Q ss_pred CccEEEEecCC--CCC---CHHHHHHHHhcCCCceeeeEeeecCC----CcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001064 1030 EVKSVYVRNLP--STV---TAFEIEEEFQNFGRIKPDGVFVRNRK----DVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1099 (1167)
Q Consensus 1030 ~~~~l~V~nlp--~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~----~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~ 1099 (1167)
+++.|+++|+- .++ -+++|++.|++||.|.+|.|.. ++. +++++||+||+|.+.++|.+|+.. ||..|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~-~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ-EKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEE-EEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEee-cCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 46899999983 222 3689999999999999987643 332 467889999999999999999987 999999
Q ss_pred CcEeEEEecc
Q 001064 1100 GRQVYIEERR 1109 (1167)
Q Consensus 1100 g~~l~V~~~r 1109 (1167)
||.|+|++..
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999864
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-09 Score=113.24 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=67.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V~ 1106 (1167)
++++|||+|||..+++++|+++|++|| .|.++.+ +++ .+|||||+|.+.++|.+|+.. +|..|+ |+.|+|.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i-~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE-SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE-EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 469999999999999999999999999 9999764 222 368999999999999999986 899999 9999999
Q ss_pred eccCC
Q 001064 1107 ERRPN 1111 (1167)
Q Consensus 1107 ~~r~~ 1111 (1167)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-09 Score=125.65 Aligned_cols=128 Identities=9% Similarity=0.037 Sum_probs=93.3
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------------PEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---------------~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
+++.....|...+..+.+.|++++|+..|++|+..+|.+ ..+|+.++.++...|++++|+..|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455667788888888888889999999999999888887 56777777777777777777777777
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 478 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 478 (1167)
++.+. |++..+|+.++.++...|++++|+..|+++ ++++|++..+|..++.++.++++++++.
T Consensus 343 al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 343 ALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV-LEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77766 667777777777777777777777777776 6677777777777777766666665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=97.66 Aligned_cols=102 Identities=16% Similarity=0.035 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
..|...+..+.+.|++++|+..|++++..+|.+.++|+.++.++...|++++|+..|++++++. |+++.+|+.++.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4577888888888999999999999999999999999999999989999999999999999887 788889999999998
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChH
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
..|++++|+..|+++ ++++|++.
T Consensus 97 ~~g~~~~A~~~~~~a-l~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAW-LLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHH-HC------
T ss_pred HcCCHHHHHHHHHHH-HHhCcCCC
Confidence 899999999999987 67788764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.6e-09 Score=95.54 Aligned_cols=107 Identities=9% Similarity=0.040 Sum_probs=98.3
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC--CHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY--SVDI 169 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~--s~~l 169 (1167)
.+|.+.+.|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+.+|++++...|. +..+
T Consensus 1 l~p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYD--AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHHS--SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence 378899999999999887 479999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHHHHHHhcCCC
Q 001064 170 WLHYCIFAINTY-GDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 170 w~~ya~~~~~~~-~~~~~Ar~~feral~~~g~d 201 (1167)
|..++..+. .. +++++|+..|++++...|.+
T Consensus 79 ~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 79 WAAKADALR-YIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHT-TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHhhcccCC
Confidence 999999988 78 99999999999999876654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-09 Score=110.19 Aligned_cols=144 Identities=14% Similarity=-0.011 Sum_probs=114.6
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh----------------HHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----------------EIHLFAA 430 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~----------------~l~~~~a 430 (1167)
.++++++...|+......+.....|...+..+...|++++|+..|.+++.+. |..+ .+|..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444556788999999999999999999999999987 5665 8999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
.++...|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++.+.|.+ +.++..++.+...
T Consensus 96 ~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKV-LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHH
Confidence 9999999999999999998 78899999999999999999999999999999999998643 6677777777555
Q ss_pred HhCCHHHHH
Q 001064 511 VSRNAEKAR 519 (1167)
Q Consensus 511 ~~g~~~~Ar 519 (1167)
.++.+++.
T Consensus 169 -~~~~~~~~ 176 (198)
T 2fbn_A 169 -LKEARKKD 176 (198)
T ss_dssp -HHHHHC--
T ss_pred -HHHHHHHH
Confidence 55555554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.86 E-value=7.3e-08 Score=90.90 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=99.3
Q ss_pred hCCCC-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 92 ANSSD-FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 92 ~nP~d-~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
.+|.+ ...|+.++..+.. .+++++|.+.|++++..+|.+..+|..++.++.+.|++++|+.+|++++...|.+..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp ----CHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence 35655 7889999998887 47999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 214 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~ 214 (1167)
..++..+. ..+++++|+..|++++...+.+ ..++..+...
T Consensus 81 ~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 120 (125)
T 1na0_A 81 YNLGNAYY-KQGDYDEAIEYYQKALELDPNN---AEAKQNLGNA 120 (125)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHH
Confidence 99999888 6899999999999999966543 4555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.86 E-value=5e-08 Score=101.49 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=125.1
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----ccChHHHHHHHHHHHHcCCHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-----KRLPEIHLFAARFKEQNGDID 440 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~-----p~~~~l~~~~a~~~e~~g~~~ 440 (1167)
..|++++|...++.+.........+|..++.++...|++++|+..|++++.+.. +....++...+.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 468888998855554443235678999999999999999999999999999652 334567888899999999999
Q ss_pred HHHHHHHHHhhhc---CC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 441 GARAAYQLVHTET---SP----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 441 ~A~~~~~~a~~~~---~P----~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
+|+..|+++ +++ .+ ....++..++.++..+|++++|+.+|++++..............++..++.++.. .|
T Consensus 84 ~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g 161 (203)
T 3gw4_A 84 AARRCFLEE-RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ-EK 161 (203)
T ss_dssp HHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHH-HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-Cc
Confidence 999999997 444 33 2345688889999999999999999999998765332222223446778888766 99
Q ss_pred CHHHHHHHHHHHHhhc
Q 001064 514 NAEKARQILVDSLDHV 529 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~ 529 (1167)
++++|+..|+++++..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-08 Score=97.45 Aligned_cols=103 Identities=11% Similarity=-0.047 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
+.....|+.++..+...|++++|...|++++.+. |+++.+|+.++.++...|++++|+..|+++ ++++|++..+|+.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA-LELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCchhHHHHHHH
Confidence 3344444555544444455555555555554444 444445555555555555555555555554 34455555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.++..+|++++|+..|++++...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 5555555555555555555555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.6e-08 Score=102.40 Aligned_cols=181 Identities=11% Similarity=-0.051 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG----DIDGARAAYQ 447 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g----~~~~A~~~~~ 447 (1167)
+|+.+|+++... .+++.++.++.++...+++++|+..|+++++ ..++..++.++.++.. + ++++|+..|+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA---QGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 477899999876 7899999999999999999999999999987 4578999999999887 6 9999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHH
Q 001064 448 LVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQ 520 (1167)
Q Consensus 448 ~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~ 520 (1167)
++. .+++..+++.++.++.. .+++++|+.+|+++++..+. ...+..+..++.++..- .+++++|+.
T Consensus 78 ~A~---~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KAV---EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES----DAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHH---HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS----HHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHH---HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC----cchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 983 56889999999999887 78999999999999987631 02356788888885541 568999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhHhh-CC--ChhHHHHHHHHHHHHhhcC
Q 001064 521 ILVDSLDHVQLSKPLLEALIHFESI-QS--SPKQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 521 i~~kal~~~p~~~~l~~~~~~~e~~-~~--~~~~~~~ar~l~eral~~~ 566 (1167)
+|+++++. +.+...+..+..+... .+ ...+.+.+..+|++++...
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999998 4444444444444332 22 2334677889999987764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=5.8e-08 Score=90.64 Aligned_cols=113 Identities=13% Similarity=0.013 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..+.|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...|.+..+|..++.
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALS--VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35678888888876 4789999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 214 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~ 214 (1167)
.+. ..|++++|+..|++++...+. ...+|..+..+
T Consensus 81 ~~~-~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALE-FLNRFEEAKRTYEEGLKHEAN---NPQLKEGLQNM 115 (118)
T ss_dssp HHH-HTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHH
T ss_pred HHH-HHhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHh
Confidence 888 678999999999999985443 45666665553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-09 Score=125.14 Aligned_cols=150 Identities=10% Similarity=-0.013 Sum_probs=129.7
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---------------YGYWKKYAD 141 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---------------~~~W~~~a~ 141 (1167)
..++++++.++.+++.+|.+..+|..++..+.+. +++++|+..|+++|..+|.+ ..+|..++.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG--GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3466777778888899999999999999999874 89999999999999999999 699999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH
Q 001064 142 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 221 (1167)
Q Consensus 142 ~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~ 221 (1167)
++.+++++++|+..|+++|.+.|.+...|+.++..+. ..+++++|+..|++++...|. ...+|..+...+...+++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQ---NKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 789999999999999996554 467888888888888887
Q ss_pred HHH-HHHHHHHH
Q 001064 222 SRV-AMIYTRIL 232 (1167)
Q Consensus 222 ~~A-~~iy~r~l 232 (1167)
+++ +.+|.+++
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 766 45555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=96.89 Aligned_cols=98 Identities=8% Similarity=-0.049 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
.|+.++..+.. .+++++|+..|+++++.+|++..+|..++.++...|++++|+..|+++|.+.|.+.+.|..++..+.
T Consensus 19 ~~~~~g~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLK--LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35555555554 2566666666666666666666666666666666666666666666666666666666666666665
Q ss_pred hhcCCHHHHHHHHHHHHHhcC
Q 001064 179 NTYGDPETIRRLFERGLAYVG 199 (1167)
Q Consensus 179 ~~~~~~~~Ar~~feral~~~g 199 (1167)
..|++++|+..|++++...|
T Consensus 97 -~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 -NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp -HHHHHHHHHHHHHHHHC---
T ss_pred -HcCCHHHHHHHHHHHHHhCc
Confidence 45666666666666665433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.5e-08 Score=96.76 Aligned_cols=120 Identities=14% Similarity=0.033 Sum_probs=106.7
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
.++.....|...+..+...|++++|+.+|++++..+|.+ ..+|+.++.++...|++++|+..|++++.+. |+++.+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 445678889999999999999999999999999999987 7899999999999999999999999999987 788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
|+.++.++...|++++|+..|+++ ++++|++..+|..+..+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRC-VSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999998 78899999888877766543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.4e-08 Score=93.91 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHH
Q 001064 422 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPML 500 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~-~~~~~l 500 (1167)
....|..++..+.+.|++++|+..|+++ ++++|++..+|..++.++.++|++++|+..|+++|++.|..... .....+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~A-l~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKA-IELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3445667788888999999999999998 78999999999999999999999999999999999998753211 122346
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALI 540 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~ 540 (1167)
|..+|.++.. .|++++|++.|+++|+..|+ +.+...+.
T Consensus 86 ~~~lg~~~~~-~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 86 MSRAGNAFQK-QNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 7778888666 99999999999999998885 44443333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.5e-08 Score=97.09 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-------YPE-----YWIRYVLCMEASGSMDLAHNALARATHVFVK 420 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~-------~~~-----~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p 420 (1167)
....|...+..+.+.|++++|+..|++||..+|. +.. +|...+.++...|++++|+..|++|+++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 4567777777777778888888888888888777 332 6666666666666666666666555542
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 421 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI----IKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 421 ~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~----~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
|++. .+++|++..+| ++.+..+..+|++++|+..|++|+++.|++
T Consensus 87 -------------------------~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 87 -------------------------FNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp -------------------------HHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------hhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3343 45699999999 999999999999999999999999999864
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.8e-08 Score=93.47 Aligned_cols=117 Identities=19% Similarity=0.045 Sum_probs=92.0
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
+.....|+..+..+...|++++|...|+++ +++.|++ ..+|+.++.++...|++++|+.+|++++...|.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQA-LGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------ 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence 456677777788888888888888888887 6777876 777888888888888888888888888888753
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
.+.+|..++.++.. .|++++|+.+|+++++..|++..++..+..+..
T Consensus 98 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 98 DVKALYRRSQALEK-LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 25677778877666 888888888888888888888888876666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.7e-08 Score=97.75 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIA------------------CANYPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~------------------~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
...|...+..+.+.|++++|+..|+++|.. .|....+|..++.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456888888888889999999999999988 44444556666665555666666666666666
Q ss_pred HhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001064 416 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 416 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
.+. |+++.+|+.++.++...|++++|+..|+++ ++++|++.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a-l~l~p~~~ 131 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLL-LRNHPAAA 131 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCGGGH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH-HhcCCCCH
Confidence 554 555556666666666666666666666655 45555555
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-07 Score=90.68 Aligned_cols=100 Identities=9% Similarity=-0.008 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh-------HHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-------EIH 426 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~-------~l~ 426 (1167)
...|+.++..+.+.|++++|+..|++||..+|.+..+|..++.++...|++++|+..|++++++. |+.. .+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHH
Confidence 45688888888899999999999999999999999999999999999999999999999999987 4332 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSP 455 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 455 (1167)
...+.++...|++++|+..|+++ ++..|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~ka-l~~~~ 114 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRS-LSEFR 114 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HhhCc
Confidence 55555555666666666666665 34444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-09 Score=121.30 Aligned_cols=156 Identities=10% Similarity=0.070 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
....|...+..+.+.|++++|+..|++++..+|.+.. +...++.+++...+ ...+|+.++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 4455566666556667777777777777766655331 11112222222111 11367777777
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+.+.|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++.+.|++ +.++..++.+.....
T Consensus 240 ~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIV-LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQEK 312 (338)
T ss_dssp HHTTTCCHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHH
Confidence 77888888888888887 67788888888888888888888888888888888777532 445556665544445
Q ss_pred CCHHHHHHHHHHHHhhcCCCH
Q 001064 513 RNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
+..++++.+|++++...|++.
T Consensus 313 ~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhCCCCCCC
Confidence 667778888888887777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=4e-08 Score=98.90 Aligned_cols=102 Identities=12% Similarity=-0.026 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----------------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVF-----------------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~-----------------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
...|...|..+...|++++|+..|.+++.+. .|....+|+.++.++...|++++|+..|+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a- 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV- 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-
Confidence 4578888998999999999999999999982 2566789999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 451 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 451 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
++++|++..+|+.++.++..+|++++|+..|++++.+.|+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999999999999874
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=90.32 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC-------hHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL-------PEI 425 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~-------~~l 425 (1167)
....|..++..+...|++++|+..|++++..+|.+..+|+.++.++...|++++|...|++++... |.. ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHH
Confidence 356788888888889999999999999999999999999999999988999999999999999887 454 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 469 (1167)
|+.++.++...|++++|+..|+++ +++.| +..++..+..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKS-LAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH-HHhCC-CHHHHHHHHHHHH
Confidence 888888888888888888888887 56677 4556555554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-07 Score=100.71 Aligned_cols=199 Identities=16% Similarity=0.139 Sum_probs=149.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-ccChHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-KRLPEIHLFAAR 431 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~-p~~~~l~~~~a~ 431 (1167)
.......|+.|+. ++ ++..+++.+...+.....++.++.++...|++++|+.++.+++...+ ....+++...+.
T Consensus 70 ~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 70 LGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp THHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 3445666777763 22 77888888876556677778899999999999999999999987652 267899999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHANMERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 503 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~~e~r~g--~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~ 503 (1167)
++.+.|+.+.|+++++++ .+.+|+ ...+.+.-+.+....| ++.+|..+|+++++..|. +.....+|.
T Consensus 145 i~L~~~r~d~A~k~l~~~-~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~---~~~~~lLln- 219 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNY-TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT---WKTQLGLLN- 219 (310)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS---HHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHH-HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC---cccHHHHHH-
Confidence 999999999999999997 677883 3333333232233444 899999999998877642 001122333
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh----------cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 504 YSRFLHLVSRNAEKARQILVDSLDH----------VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 504 ~a~~~~~~~g~~~~Ar~i~~kal~~----------~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
. +...|++++|.++++.+++. .|+++..+.+.+.+....+. .+.++++++....|+++
T Consensus 220 ---~-~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 220 ---L-HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-----DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp ---H-HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-----TTHHHHHHHHHTTCCCH
T ss_pred ---H-HHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhCCCCh
Confidence 3 33499999999999988876 48899999888888877764 35788899988888877
|
| >3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=113.24 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=61.0
Q ss_pred CCccEEEEec--CCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---Cc-
Q 001064 1029 GEVKSVYVRN--LPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GR- 1101 (1167)
Q Consensus 1029 ~~~~~l~V~n--lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~---g~- 1101 (1167)
.+.++||||| |++++|+++|+++|++||.|++|.+ . . +||||||+|.+.++|++||+. ||..+. |+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~--~-~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--P-P----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC--C-T----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE--e-C----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 4678999999 5789999999999999999998643 2 1 579999999999999999987 898884 44
Q ss_pred -EeEEEec
Q 001064 1102 -QVYIEER 1108 (1167)
Q Consensus 1102 -~l~V~~~ 1108 (1167)
.|.|.+.
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4777665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-08 Score=89.89 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc--ChHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAAR 431 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~--~~~l~~~~a~ 431 (1167)
...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|...|+++++.. |. ...+|..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555544 44 4445555555
Q ss_pred HHHHc-CCHHHHHHHHHHH
Q 001064 432 FKEQN-GDIDGARAAYQLV 449 (1167)
Q Consensus 432 ~~e~~-g~~~~A~~~~~~a 449 (1167)
++... |++++|+..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 55555 5555555555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-08 Score=114.88 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
.+|+.++.++...|++++|+..|++++.+. |++..+|+.++.++...|++++|+..|+++ ++++|++..++..++.+.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a-l~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA-QKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT-TC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
Confidence 489999999999999999999999999987 889999999999999999999999999998 789999999998888874
Q ss_pred -HHcCCHHHHHHHHHHHHHhhhC
Q 001064 469 -RRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 469 -~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
...+..++++.+|++++...|.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Confidence 4456778899999999998764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.4e-08 Score=95.98 Aligned_cols=73 Identities=8% Similarity=0.074 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh-------cCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIA-------CANYPEYW----IRYVLCMEASGSMDLAHNALARATHVFVKRLP 423 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~-------~p~~~~~w----~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~ 423 (1167)
..|.+.+..+.+.|++++|+..|++||.. +|.+..+| ++.+..+...|++++|+..|++++++. |.+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~-p~d~ 136 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI-EERK 136 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC-CCcH
Confidence 38999999999999999999999999999 99999999 999999999999999999999999988 5555
Q ss_pred HHHHH
Q 001064 424 EIHLF 428 (1167)
Q Consensus 424 ~l~~~ 428 (1167)
.+.-.
T Consensus 137 ~~~~~ 141 (159)
T 2hr2_A 137 GETPG 141 (159)
T ss_dssp SCCTT
T ss_pred HHHHH
Confidence 44433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-08 Score=96.37 Aligned_cols=95 Identities=14% Similarity=0.004 Sum_probs=81.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ--------DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG- 147 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~--------~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~- 147 (1167)
+.+++++..++++++++|.+.++|+.++..+..+.+ +.+++|+..|+++|+++|++..+|..++..+..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999998876521 23579999999999999999999999999998774
Q ss_pred ----------CHHHHHHHHHHHHhccCCCHHHHH
Q 001064 148 ----------SMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 148 ----------~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
++++|++.|++||.+.|.+...|.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 899999999999999998864443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.6e-07 Score=91.34 Aligned_cols=139 Identities=11% Similarity=-0.073 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LL 458 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~ 458 (1167)
+|..++.++...|++++|...+++++.+.+... ..++..++.++...|++++|...|+++ +++.+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT-LLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhCCcHHHH
Confidence 344444444444444444444444444431110 124444555555555555555555554 222111 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
.++..++.++...|++++|+.+|++++..............++..++.++.. .|++++|+..|+++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA-LGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888764322222334566777877665 8999999999999987654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-07 Score=88.08 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC---hHHHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAA 430 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~---~~l~~~~a 430 (1167)
+...+..+...|++++|+..|++++...|.++ .+|+.++.++...|++++|+..|++++... |++ +.+++.++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 45556666677888888888888888777776 688888887878888888888888888776 566 66777778
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
.++...|++++|+..|+++ ++..|++..++.....+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV-ATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-HHHCCCChHHHHHHHHHH
Confidence 8888888888888888877 566777776655554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=120.96 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 435 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~ 435 (1167)
.|..++..+.+.|++++|+..|++++..+|.+..+|..++.++...|++++|+..|++++++. |+++.+|+.+|.++..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444555678999999999999999999999999999999999999999999999999987 8899999999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhhhC
Q 001064 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANM--ERRLGNLEDAFSLYE-----------QAIAIEKG 490 (1167)
Q Consensus 436 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~--e~r~g~~e~A~~~~~-----------kAl~~~~~ 490 (1167)
.|++++|+..|+++ ++++|++..+|..++.+ +.++|++++|+.+++ +++...+.
T Consensus 87 ~g~~~eA~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 87 LGKFRAALRDYETV-VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HTCHHHHHHHHHHH-HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred cCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999998 78899999888888777 778899999999999 77777654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-08 Score=92.70 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=84.4
Q ss_pred CCCchHHHHHHHHHHh---CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001064 77 SAMSGEEDRLWNIVKA---NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~---nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
|++++++..|+++++. +|.+..+|+.|+..+..+ +++++|+..|+++++.+|++..+|..++.++.+.|++++|+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 7899999999999999 699999999999999874 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHH
Q 001064 154 EVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~ 171 (1167)
..|+++|...|.+.+++.
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999999877653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-07 Score=88.43 Aligned_cols=113 Identities=13% Similarity=-0.022 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
++..+..+...|++++|...|+++ ++..|++. .+|+.++.++.+.|++++|+.+|++++...|+. ...+.++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSF-LELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-HHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---cccHHHHH
Confidence 455566666677777777777776 55566665 567777777777777777777777777776532 12245566
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhH
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 543 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e 543 (1167)
.++.++.. .|++++|+.+|+++++.+|++.........+.
T Consensus 81 ~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 81 KLGLSQYG-EGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 66766555 77777777777777777777766655444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-07 Score=88.92 Aligned_cols=115 Identities=14% Similarity=0.056 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-------HH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-------VD 168 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-------~~ 168 (1167)
..+.|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+.+|++++...|.+ ..
T Consensus 3 ~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYK--KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 46788999998877 4799999999999999999999999999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 001064 169 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM 217 (1167)
Q Consensus 169 lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~ 217 (1167)
+|..++..+. ..|++++|+..|++++...+ + ..++..+......
T Consensus 81 ~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~-~---~~~~~~l~~~~~~ 124 (131)
T 1elr_A 81 AYARIGNSYF-KEEKYKDAIHFYNKSLAEHR-T---PDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHH
Confidence 9999999888 68999999999999999654 2 4555555554433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-06 Score=95.70 Aligned_cols=171 Identities=11% Similarity=-0.002 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---- 457 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---- 457 (1167)
...+...+..+...|++++|...+.++++.. +... ..++..+.++...|++++|...|+++ +++.+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~ 152 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL-LNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH-HTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCchH
Confidence 3456666777778999999999999999875 3322 33455677788889999999999998 4443322
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC--
Q 001064 458 --LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS-- 532 (1167)
Q Consensus 458 --~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~-- 532 (1167)
..+|...+.++..+|++++|+.+|++|+........... ...++..+|.++.. .|++++|..+|+++++..+..
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHhcCc
Confidence 568899999999999999999999999966432111111 12578888888776 999999999999999875321
Q ss_pred ----HHHHHHHHHhHhhCCChhHHHHH-HHHHHHHhh
Q 001064 533 ----KPLLEALIHFESIQSSPKQIDFL-EQLVDKFLM 564 (1167)
Q Consensus 533 ----~~l~~~~~~~e~~~~~~~~~~~a-r~l~eral~ 564 (1167)
..++...+......++. +.+ ...|++++.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~---~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYE---EAEIEDAYKKASF 265 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHH
Confidence 35555555555555543 334 555666644
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.65 E-value=6.6e-08 Score=115.88 Aligned_cols=121 Identities=9% Similarity=-0.053 Sum_probs=105.8
Q ss_pred cccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 001064 69 AGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 69 ~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~ 148 (1167)
.+..+...+++++|++.|+++++.+|.+..+|..++..+..+ +++++|+..|+++++.+|.+..+|..++.++..+|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344455558999999999999999999999999999999885 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHH--HHhhcCCHHHHHHHHH
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIF--AINTYGDPETIRRLFE 192 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~--~~~~~~~~~~Ar~~fe 192 (1167)
+++|++.|+++|+..|.+.++|..++.. +. ..+++++|+..|+
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIV-KQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH-HHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHhcccc
Confidence 9999999999999999999999888776 55 4688999999999
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.9e-07 Score=95.64 Aligned_cols=138 Identities=13% Similarity=0.058 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--c---
Q 001064 352 TELENWHNYLDFIERDGDFNKVVKLYERCLIAC------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV--K--- 420 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p--- 420 (1167)
.....|..++.++...|++++|+..|++++... +....+|..++.++...|++++|...+++++.+.. +
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 456788889999999999999999999999943 33456899999999999999999999999999842 1
Q ss_pred -cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC---CC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 421 -RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS---PG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 421 -~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~---P~---~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
....++..++.++...|++++|+..|++++ ++. .+ ...++..++.++...|++++|+.+|++++.+...
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSL-VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 234567788999999999999999999973 321 11 1234678888999999999999999999998753
|
| >3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=89.05 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=60.4
Q ss_pred CccEEEEecCCCCC----------CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001064 1030 EVKSVYVRNLPSTV----------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i 1098 (1167)
+.+.|.+.|+=..- -+++|++.|++||.|.+|.| .++ .++|||||+|.+.++|.+|+.. ||..|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i-~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV-DKN----SAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE-CTT----CTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE-ecC----CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34788888873221 13588999999999999754 222 2589999999999999999987 99999
Q ss_pred eCcEeEEEecc
Q 001064 1099 AGRQVYIEERR 1109 (1167)
Q Consensus 1099 ~g~~l~V~~~r 1109 (1167)
+||.|+|++..
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999875
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=107.77 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhc----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIAC----------------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~----------------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
..|...+..+.+.|++++|+..|+++|..+ +....+|..++.++...|++++|+..|++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 457777777788899999999999999843 3333444444444444444444444444444443
Q ss_pred hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 419 VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 419 ~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
|+++.+|+.++.++...|++++|+..|+++ ++++|++..++..++.++..+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A-l~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKA-QEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444 34444444444444444433333
|
| >2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=83.14 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=60.3
Q ss_pred CccEEEEecCCC----CCCH----HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCc
Q 001064 1030 EVKSVYVRNLPS----TVTA----FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGR 1101 (1167)
Q Consensus 1030 ~~~~l~V~nlp~----~~t~----~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~ 1101 (1167)
+..+|+|.-++. +.-. .+|.+.|++||.|..+++ +. +.+||+|.+.++|.+||+++|..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~-~~--------d~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRF-VE--------DKMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEE-CS--------SSEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEE-ec--------CCEEEEECChHHHHHHHhcCCeEeCCe
Confidence 346788877652 2223 578999999999998775 32 238999999999999999999999999
Q ss_pred EeEEEeccCCCC
Q 001064 1102 QVYIEERRPNTG 1113 (1167)
Q Consensus 1102 ~l~V~~~r~~~~ 1113 (1167)
.|+|..+++...
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999987643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=8.2e-07 Score=98.88 Aligned_cols=164 Identities=9% Similarity=0.021 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhh--HHHHHH-HHHHHHHcCChHHHHHHHHHHHHhcCCC------HHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE--LENWHN-YLDFIERDGDFNKVVKLYERCLIACANY------PEY 390 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~--~~~W~~-y~~~~e~~g~~~~a~~~yeral~~~p~~------~~~ 390 (1167)
..+...+++++++..|+++++. .+..+.. .-.|.. .+.++...+++++|+..|++++...... ..+
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKK-----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3456778999999999999872 1223322 233544 5666667789999999999999864332 237
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFV------KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLL 458 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~------p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~ 458 (1167)
+..++.++...|++++|...|+++++... +....++..++.++...|++++|+..|+++ +++. ....
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a-l~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA-IEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHcCcHHHHH
Confidence 89999999999999999999999997542 223458888999999999999999999998 4443 2337
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 001064 459 EAIIKHANMERRLG-NLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g-~~e~A~~~~~kAl~~~~ 489 (1167)
.+|...+.++.++| ++++|...|++|+.+..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88999999999999 47999999999999875
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=93.52 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=74.7
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN----------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 504 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~----------~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~ 504 (1167)
+.+.+++|++.|+++ ++++|++.++|+.|+.++..+++ +++|+..|++||+++|+. +.+|..+
T Consensus 14 r~~~feeA~~~~~~A-i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~~A~~~L 86 (158)
T 1zu2_A 14 RILLFEQIRQDAENT-YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------DEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHhHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------HHHHHHH
Confidence 344566677777776 56677777777777776666655 458999999999988643 6678888
Q ss_pred HHHHHHHh-----------CCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 505 SRFLHLVS-----------RNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 505 a~~~~~~~-----------g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
+..+.. . |++++|.+.|++||+++|++..++.++...
T Consensus 87 G~ay~~-lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 87 GNAYTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHH-hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 877665 4 589999999999999999998776554433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5.3e-07 Score=104.19 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHV---------------FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 452 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~---------------~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~ 452 (1167)
...|...+..+...|++++|+..|++|+++ ..+....+|+.++.++.+.|++++|+..|+++ ++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a-l~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA-LE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH-HH
Confidence 356888999999999999999999999983 22567789999999999999999999999998 78
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHH
Q 001064 453 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ 520 (1167)
Q Consensus 453 ~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~ 520 (1167)
++|++..+|+.++.++.++|++++|+..|++|+++.|.+ +.++..++.++.. .++.+++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~-~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQK-IKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999998643 6677777777665 666666544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=87.71 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCC---ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPL---SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 401 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pl---d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~ 401 (1167)
.+++++|+..|+++|+ + +|.....|..++..+...|++++|+..|++++..+|.++.+|+.++.++...
T Consensus 3 ~g~~~~A~~~~~~al~--------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA--------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL 74 (117)
T ss_dssp ----CCCHHHHHHHHS--------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH--------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Confidence 3556677777888776 4 5777777888888777888888888888888888888888888888888778
Q ss_pred CCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 402 GSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
|++++|+..|++++... |+++.+..
T Consensus 75 g~~~~A~~~~~~al~~~-p~~~~~~~ 99 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAET-SDDETIQS 99 (117)
T ss_dssp TCHHHHHHHHHHHHHHH-CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 88888888888888776 56665543
|
| >1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=90.92 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=66.5
Q ss_pred chhHhHHHHHHHHhhhcCc-----ccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccC-CC
Q 001064 719 AQVGSYFVGQYYQVLQQQP-----DLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW-NG 792 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~~~p-----~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~-~~ 792 (1167)
.+.+..||+.||..|+..+ ..|..|+...+ -+.++|..+.....-.+| +..+++.+.++|+++|||-.. .|
T Consensus 16 ~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~-~Ii~NG~p~a~p~~fqei--w~~Q~p~T~hel~S~D~HVIngsg 92 (184)
T 1of5_B 16 AQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNC-RIIFNATPFAQATVFLQM--WQNQVVQTQHALTGVDYHAIPGSG 92 (184)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-C-CEEETTEEESCHHHHHHH--HHHHSCCCEEEEEEEEEEEETTTT
T ss_pred hhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCc-eEEECCeEcCCHHHHHHH--HHhcCCCceEEEEeEEEEEECCCC
Confidence 4578999999999999987 77888876654 445899987555444443 555899889999999999865 35
Q ss_pred ceEEEEEEEEEecCccccceeEEEEEEeee
Q 001064 793 GVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 822 (1167)
Q Consensus 793 ~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~ 822 (1167)
+|+|+|+|.|..++.. .-+|.++|+|.|.
T Consensus 93 sivv~VsgkVRFdEsg-rd~fgEtfvLvpn 121 (184)
T 1of5_B 93 TLICNVNCKVRFDESG-RDKMGQDATVPIQ 121 (184)
T ss_dssp EEEEEEEEEEECC-----------------
T ss_pred eEEEEEEEEEEECCCC-CCCCCCeEEECCC
Confidence 7999999999998653 3599999999977
|
| >1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=87.04 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=62.9
Q ss_pred CCCCccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECC-HHHHHHHHHh-C--CCeeeCc
Q 001064 1027 DEGEVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED-ISGVQNAIQA-S--PIQLAGR 1101 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~-~~~a~~Al~~-~--~~~i~g~ 1101 (1167)
.-..|..|||+||+.+ ++.++|+++|++||.|+.|.+ ++++. .|||.|.+ ..+|..|+.. + +..|.|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 4457899999999999 999999999999999999875 43332 69999999 7889988876 3 8999999
Q ss_pred EeEEEe
Q 001064 1102 QVYIEE 1107 (1167)
Q Consensus 1102 ~l~V~~ 1107 (1167)
.++++.
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 888864
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.5e-07 Score=83.31 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA 159 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era 159 (1167)
..++..|+++++.+|.+..+|+.|+..+... +++++|+..|++++..+|.+..+|..++.++...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788888888888888888888888764 78888888888888888888888888888888888888888888888
Q ss_pred HhccCC
Q 001064 160 VQGVTY 165 (1167)
Q Consensus 160 L~~~P~ 165 (1167)
+...|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 887653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=102.32 Aligned_cols=207 Identities=9% Similarity=0.030 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccC------CCC---hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH---
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVK------PLS---VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE--- 389 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~------pld---~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~--- 389 (1167)
+...+++.+|+..|.++++...-... ... .........++..+...|++++++.+|.+++...+....
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 45678899999999999873110000 000 111234677888889999999999999999987655433
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----CCC
Q 001064 390 ---YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTET-----SPG 456 (1167)
Q Consensus 390 ---~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-----~P~ 456 (1167)
+...++.++...|+.+.|..++++++.+.... ...++..++.++...|++++|..++++++... .+.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 33334444455789999999999999876322 35688889999999999999999999874321 344
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 457 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 457 ~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
..++++..+.++..+|++++|+.+|++++...+...+.+. ...++...+.+. ...|++++|...|.++++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH-CEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999998754322111 123455555554 44899999999999998753
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=86.87 Aligned_cols=135 Identities=14% Similarity=0.032 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----C
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----L 422 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~ 422 (1167)
...|..++..+...|++++|+..|++++...+... .++..++.++...|++++|...+++++.+.... .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888888899999999999999998855322 378889999999999999999999999977321 2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
..++..++.++...|++++|...|+++ +++. +....++..++.++..+|++++|+.+|++++++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999997 3331 22345678889999999999999999999998864
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=81.75 Aligned_cols=83 Identities=18% Similarity=0.079 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 117 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 117 ~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
.++..|+++++.+|++..+|..++.++...|++++|+..|++++...|.+...|+.++..+. ..|++++|+..|++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999998 68999999999999998
Q ss_pred hcCC
Q 001064 197 YVGT 200 (1167)
Q Consensus 197 ~~g~ 200 (1167)
..+.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-05 Score=90.72 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=144.1
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh----
Q 001064 365 ERDGDFNKVVKLYERCLIACANYP-----------------EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---- 423 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~-----------------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~---- 423 (1167)
.+.|++++|+..|.+++...+... .++..++.++...|++++|...|.+++... +...
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 93 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQFAKSKT 93 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccchHH
Confidence 467899999999999999876543 357889999999999999999999999876 3322
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 424 --EIHLFAARFKEQNGDIDGARAAYQLVHT-----ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 424 --~l~~~~a~~~e~~g~~~~A~~~~~~a~~-----~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
.+....+.+....|+++.|..++++++. ...+....++..++.++...|++++|..++++++.......+...
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 2344456666678999999999998631 113345678899999999999999999999999998765444455
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc---CCCHH----HHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV---QLSKP----LLEALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~---p~~~~----l~~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
...++...++++.. .|++++|+.+|++++... ++... ++..+..+....++ .+.+...|..++.
T Consensus 174 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD---YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 56778888888766 999999999999999853 44433 33333444444443 4445555555543
|
| >1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-06 Score=77.30 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=58.7
Q ss_pred CccEEEEecCCCC------CCH---HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeC
Q 001064 1030 EVKSVYVRNLPST------VTA---FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG 1100 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~------~t~---~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g 1100 (1167)
+..+|+|.-++.. ..+ .+|.+.|++||.|..+++ +.+ -+||+|.+.++|.+||+++|..++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~-v~d--------~~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRI-NQG--------QMLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEE-ETT--------EEEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEE-ecC--------cEEEEEcChHHHHHHHhcCCeeeCC
Confidence 4578999888643 221 468999999999988775 322 2999999999999999999999999
Q ss_pred cEeEEEeccC
Q 001064 1101 RQVYIEERRP 1110 (1167)
Q Consensus 1101 ~~l~V~~~r~ 1110 (1167)
|.|+|..+.+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5.3e-06 Score=73.55 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHH
Q 001064 94 SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 173 (1167)
Q Consensus 94 P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y 173 (1167)
+.+...|+.++..+... +++++|...|++++..+|.+..+|..++.++.+.|++++|+..|++++...|.+...|..+
T Consensus 6 ~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp CHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34678899999988874 7999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHH
Q 001064 174 CIFAI 178 (1167)
Q Consensus 174 a~~~~ 178 (1167)
+..+.
T Consensus 84 ~~~~~ 88 (91)
T 1na3_A 84 GNAKQ 88 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-06 Score=79.30 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=60.1
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccC
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVT 164 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P 164 (1167)
.+|.+..+|+.|+..+... +++++|+..|+++++.+|++..+|..++.++...|++++|++.|++++.+.|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4788999999999988874 7899999999999999999999999999999999999999999999988754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.3e-07 Score=81.84 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC------HHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS------VDI 169 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s------~~l 169 (1167)
+.++|+.++..+.. .+++++|...|+++++.+|.+..+|..++.++.+.|++++|++.|+++|...|.+ ..+
T Consensus 3 ~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK--QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 46789999999887 4899999999999999999999999999999999999999999999999999998 777
Q ss_pred HHHHHHHHHhhcCCHHHHHH
Q 001064 170 WLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 170 w~~ya~~~~~~~~~~~~Ar~ 189 (1167)
++..+..+. ..|+.+.+..
T Consensus 81 ~~~~~~~~~-~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQG-AVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHH-HHHCCCCCSS
T ss_pred HHHHHHHHH-HHHhHhhhHh
Confidence 777666665 3444444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=9e-05 Score=79.94 Aligned_cols=86 Identities=22% Similarity=0.242 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH-cCCHHH
Q 001064 370 FNKVVKLYERCLIACANYPE--YWIRYVLCMEAS-----GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ-NGDIDG 441 (1167)
Q Consensus 370 ~~~a~~~yeral~~~p~~~~--~w~~ya~~l~~~-----g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~-~g~~~~ 441 (1167)
..+++.+++|++..+|.+.+ +|..++.++... |+.++|+..|+||+++.|..+...+++|++++.. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34677778888888777443 777777766653 6666666666666666622336666666666655 366666
Q ss_pred HHHHHHHHhhhcCCC
Q 001064 442 ARAAYQLVHTETSPG 456 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~ 456 (1167)
++..++++ +..+|.
T Consensus 259 a~~~L~kA-L~a~p~ 272 (301)
T 3u64_A 259 FDEALDRA-LAIDPE 272 (301)
T ss_dssp HHHHHHHH-HHCCGG
T ss_pred HHHHHHHH-HcCCCC
Confidence 66666665 444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=70.15 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
....|..++..+...|++++|+.+|++++..+|.+..+|+.++.++...|++++|+..|++++.+. |.++.++..++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345666677766777777777777777777777777777777777777777777777777777765 5666666666665
Q ss_pred HHHc
Q 001064 433 KEQN 436 (1167)
Q Consensus 433 ~e~~ 436 (1167)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-06 Score=80.59 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC------hHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL------PEIHL 427 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~------~~l~~ 427 (1167)
...|..++..+...|++++|+..|++++...|.++.+|+.++.++...|++++|+..|++++.+. |++ ..+++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 45566667666677777777777777777777777777777777777777777777777777765 454 55555
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~ 445 (1167)
..+..+...|+++.|+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 556555555555444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3e-05 Score=83.62 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=94.4
Q ss_pred hCCCCHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----CCHHHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKL---------AQDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARV-----GSMDKVVEV 155 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~---------~~~~~~~ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~-----~~~e~A~~l 155 (1167)
.+|.|.++++=++...... .-..+..|+..++++|+++|. +..+|..++.+|.+. |+.++|++.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 4577777766444333220 014678899999999999999 677999999999995 999999999
Q ss_pred HHHHHhccCCC-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHH
Q 001064 156 YERAVQGVTYS-VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD-YLSFPLWDKYIE 213 (1167)
Q Consensus 156 ~eraL~~~P~s-~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d-~~s~~lw~~y~~ 213 (1167)
|+|+|++.|.. .+.++.|+.++....++.+.+++.+++++...+.. +. ..+++...+
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~-~~lan~~~q 285 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH-NKLLVILSQ 285 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS-CHHHHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC-hhHHHHHHH
Confidence 99999999975 99999999999844699999999999999944332 22 355554444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.08 E-value=9e-06 Score=73.69 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Q 001064 101 TALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG-YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN 179 (1167)
Q Consensus 101 ~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~-~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~ 179 (1167)
+.++..+.. .+++++|+..|+++++.+|.+.. +|..++.++...|++++|++.|+++|...|.+...|..
T Consensus 4 ~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELIN--QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHH--HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 345555554 47899999999999999999999 99999999999999999999999999999999888743
Q ss_pred hcCCHHHHHHHHHHHHHhcCCC
Q 001064 180 TYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 180 ~~~~~~~Ar~~feral~~~g~d 201 (1167)
+.+.++...|++++...|.+
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCC
T ss_pred --HHHHHHHHHHHHHhccCccc
Confidence 22566777888877766554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=73.39 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=64.5
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 001064 128 EFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVG 199 (1167)
Q Consensus 128 ~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g 199 (1167)
.+|++..+|..++.++...|++++|+..|+++|...|.+..+|..++..+. ..|++++|+..|++++...+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhh
Confidence 479999999999999999999999999999999999999999999999998 78999999999999998543
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.96 E-value=9.9e-06 Score=86.22 Aligned_cols=66 Identities=30% Similarity=0.340 Sum_probs=56.5
Q ss_pred CHHHHHHHHhcCCCceeeeEeee---cCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1044 TAFEIEEEFQNFGRIKPDGVFVR---NRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1044 t~~~l~~~F~~~G~i~~v~i~~~---~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.+++|++.|++||.|.++.|... ++.+|+++||+||+|.+.++|.+|+.. +|..++||.|.|++..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 46789999999999999876321 234568999999999999999999987 8999999999998754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-05 Score=71.36 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhccChH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 393 RYVLCMEASGSMDLAHNALARATHVFVKRLPE-IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 393 ~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~-l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
..+..+...|++++|+..|+++++.. |+++. +|+.++.++...|++++|+..|+++ ++++|++..+|..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA-IELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHHHH--------
Confidence 33444455566666666666666554 55555 6666666666666666666666665 4556665555432
Q ss_pred CCHHHHHHHHHHHHHhhhC
Q 001064 472 GNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 472 g~~e~A~~~~~kAl~~~~~ 490 (1167)
+.+.++...|++++...|+
T Consensus 75 ~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHHhccCcc
Confidence 3345556666666655553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=6.4e-05 Score=89.52 Aligned_cols=137 Identities=12% Similarity=-0.007 Sum_probs=88.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh----ccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHh----hhcCCC---hHHHHHH
Q 001064 398 MEASGSMDLAHNALARATHVFV----KRL---PEIHLFAARFKEQNGDIDGARAAYQLVH----TETSPG---LLEAIIK 463 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~----p~~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~----~~~~P~---~~~~~~~ 463 (1167)
+..+|++++|..+|++++++.. +++ ..++..++.++..+|++++|+.+|++++ ..+-|+ ....+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3356677777777777766542 222 2345556666777777777777777652 122344 4455888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhh---CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEK---GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~---~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
++.++..+|++++|+.+|++|+++.. +.+| +....+...++..... .+.+++|..+|.++++..-++..+|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~~e-~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRMQTEME-LRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999764 2222 2223344455555433 7889999999999988776666666
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.86 E-value=5e-05 Score=68.43 Aligned_cols=78 Identities=8% Similarity=-0.037 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 93 NSSDFSAWTALLEETEKLAQD-NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 93 nP~d~~aw~~L~~~~~~~~~~-~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
+|.|.+.|..++..+.....+ ...+++.+|+++|+.+|+|...++.++..+.+.|++++|+..|+++|...|. +.|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~--~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP--NLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT--TCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccH
Confidence 789999999999988643211 2589999999999999999999999999999999999999999999999887 4454
Q ss_pred H
Q 001064 172 H 172 (1167)
Q Consensus 172 ~ 172 (1167)
.
T Consensus 80 ~ 80 (93)
T 3bee_A 80 V 80 (93)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00047 Score=69.97 Aligned_cols=133 Identities=13% Similarity=0.172 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHh---CCH---HHHH-HHHHHHHhccCC---------CHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAE---FPLC-YGYWKKYADHEARV---GSM---DKVV-EVYERAVQGVTY---------SVDIWLH 172 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~---~P~~-~~~W~~~a~~e~~~---~~~---e~A~-~l~eraL~~~P~---------s~~lw~~ 172 (1167)
..+.+.|+.||+-|.. .-++ .+.|..|+.+.... |.. .... .+++||++.+-+ -..+|+.
T Consensus 6 ~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~ 85 (202)
T 3esl_A 6 SQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIW 85 (202)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 3567889999998877 3333 48999999987643 332 2244 799999986532 3789999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 001064 173 YCIFAINTYGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 249 (1167)
Q Consensus 173 ya~~~~~~~~~~~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~ 249 (1167)
|+++.. .++....+.+|..+... +|.. ...+|..|+.++...|++.+|..||+++++..-.-++.+-..+..|
T Consensus 86 Ya~~~~--~~~~~~p~~if~~L~~~~IG~~--~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F 159 (202)
T 3esl_A 86 YINLFL--SNNFHESENTFKYMFNKGIGTK--LSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNY 159 (202)
T ss_dssp HHHHHS--TTCHHHHHHHHHHHHHHTSSTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred HHHhhc--ccccCCHHHHHHHHHHCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 999863 34467889999988863 4554 6789999999999999999999999999996333334444444444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00043 Score=67.31 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=95.2
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH----cCCHHHHH
Q 001064 368 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGAR 443 (1167)
Q Consensus 368 g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~----~g~~~~A~ 443 (1167)
+|+++|+.+|+++.... +++.. ++.++...+..++|+..|+++++. .++..++.++.++.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 36789999999999874 34444 888777777889999999999984 578999999999998 89999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 001064 444 AAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 444 ~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~~~~kAl~~~ 488 (1167)
..|+++ .+. ++...++.++.++.. .+++++|+..|++|.+..
T Consensus 82 ~~~~~A-a~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKA-CGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHH-HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999998 343 778899999999988 899999999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0017 Score=77.64 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhhhccChHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASG---------SMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~~~~~w~~ya~~l~~~g---------~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
++...++.+-+.|+.++|+.+|++.... +.-+...|..++..+...+ .+++|..+|++....-..-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666778888999999999999998876 3445566777666554433 36788899988766433335667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 504 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~-~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~ 504 (1167)
|..+...+.+.|++++|..+|++.... +.| +...|...+..+.+.|++++|..+|++..+..- .++ ...|..+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~----~Pd-~~ty~~L 181 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEV----VPE-EPELAAL 181 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----CCC-HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCC-HHHHHHH
Confidence 778888889999999999999986322 345 456788888888999999999999999887532 122 4567778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 505 SRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 505 a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
...+.+ .|+.++|.++|++..+.
T Consensus 182 i~~~~~-~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 182 LKVSMD-TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhh-CCCHHHHHHHHHHHHHh
Confidence 777666 99999999999998764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00052 Score=77.17 Aligned_cols=136 Identities=12% Similarity=0.042 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHH--HHcC---ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cC-CH----HHHHHHHHHH--HH
Q 001064 352 TELENWHNYLDFI--ERDG---DFNKVVKLYERCLIACANYPEYWIRYVLCMEA---SG-SM----DLAHNALARA--TH 416 (1167)
Q Consensus 352 ~~~~~W~~y~~~~--e~~g---~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~---~g-~~----e~A~~vl~rA--~~ 416 (1167)
.+++.|..|+.-. ...+ +..+|+.+|++|+..+|.+..+|-.++.++.. .+ .. ......+..+ +.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 3455666665422 2223 35789999999999999999877765544421 11 11 1111222221 12
Q ss_pred hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 417 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
. .+..+.+|..++..+...|++++|+..++++ +.++|+ ...|..++.++.-.|+.++|...|++|+.+.|.
T Consensus 272 ~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rA-l~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 272 E-LNNLSIIYQIKAVSALVKGKTDESYQAINTG-IDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp G-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred c-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2 2678888888888888889999999999999 788975 567788888888999999999999999999863
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0015 Score=73.47 Aligned_cols=153 Identities=9% Similarity=0.007 Sum_probs=110.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hC-----CHHHHHH
Q 001064 86 LWNIVKANSSDFSAWTALLEETEKLA---QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR---VG-----SMDKVVE 154 (1167)
Q Consensus 86 l~~~l~~nP~d~~aw~~L~~~~~~~~---~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~---~~-----~~e~A~~ 154 (1167)
...+...-|.+.++|..+.+-...+. ...+.+|+.+|+++++++|++..+|-.++..+.- .+ .......
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 34566778999999997776655432 3567899999999999999998877765555431 11 1112222
Q ss_pred HHHH--HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001064 155 VYER--AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 155 l~er--aL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l 232 (1167)
.+++ ++...|.+..+|..++-... ..|+++.|+..++||+...+ +...|..++......|++++|...|.+++
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~----s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEM----SWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3332 22455888888887776665 46999999999999999642 45667777788888999999999999999
Q ss_pred hcchhhHHHHH
Q 001064 233 ENPIQQLDRYF 243 (1167)
Q Consensus 233 ~~p~~~~~~~~ 243 (1167)
.+.|.....+|
T Consensus 338 rL~P~~~t~~~ 348 (372)
T 3ly7_A 338 NLRPGANTLYW 348 (372)
T ss_dssp HHSCSHHHHHH
T ss_pred hcCCCcChHHH
Confidence 98776543333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.001 Score=64.54 Aligned_cols=109 Identities=10% Similarity=-0.059 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA---- 400 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~---- 400 (1167)
.+++.+|+..|+++++ .+.... . ++.++...+.+++|+.+|+++... .++..++.++.++..
T Consensus 8 ~~d~~~A~~~~~~aa~--------~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE--------LNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHHHHH--------TTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred ccCHHHHHHHHHHHHc--------CCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 3567788888999987 332222 2 777777778888999999999987 789999999999988
Q ss_pred cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Q 001064 401 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLVH 450 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a~ 450 (1167)
.++.++|+..|++|++. .++..++.++.++.. .+|+++|+..|+++.
T Consensus 74 ~~d~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 78999999999999984 578899999999998 899999999999983
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00054 Score=61.59 Aligned_cols=72 Identities=11% Similarity=-0.117 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 129 FPLCYGYWKKYADHEARVGS---MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 129 ~P~~~~~W~~~a~~e~~~~~---~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
+|.+..+|..|+..+...++ .++|+.+|+++|+.+|.++..++.++..++ ..|++++|+..|++++...|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999976655 799999999999999999999999999999 6899999999999999965553
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0019 Score=65.59 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHc---CCh---HHHH-HHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 352 TELENWHNYLDFIERD---GDF---NKVV-KLYERCLIACAN---------YPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~---g~~---~~a~-~~yeral~~~p~---------~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
+-++.|..|+.|.+.. |.. .... .+++||+...-+ +..+|+.|+.++ ..+...++..+|.-..
T Consensus 28 DPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~ 106 (202)
T 3esl_A 28 DPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMF 106 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHH
Confidence 3488999999998754 332 2355 799999986533 335899998865 2233556666665554
Q ss_pred Hhh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 416 HVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 416 ~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
..- -.....+|..||.+++..|++.+|..+|+..
T Consensus 107 ~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 107 NKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 311 1346677777777777778887777777776
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00051 Score=81.75 Aligned_cols=97 Identities=8% Similarity=0.065 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHH---HHHH
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIR 393 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-----p~~~~---~w~~ 393 (1167)
+...++|++|+..|+++|....-.+.+..|.-+..+..++..+...|++++|+.+|+++|... +++++ .+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455677888888888888644444556667777788888888888889999888888888762 44444 5677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 394 YVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+|.++..+|++++|..+|++|+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7777777888888888888777765
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0011 Score=64.57 Aligned_cols=125 Identities=14% Similarity=0.260 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHhccCC---------CHHHHHHHHHHHHhh
Q 001064 115 IVKIRRVYDAFLAEFPL-C-YGYWKKYADHEARV---GSMDKVVEVYERAVQGVTY---------SVDIWLHYCIFAINT 180 (1167)
Q Consensus 115 ~~~ar~~ye~~l~~~P~-~-~~~W~~~a~~e~~~---~~~e~A~~l~eraL~~~P~---------s~~lw~~ya~~~~~~ 180 (1167)
...+|..||..|..+-. + .+.|..|+.+.... |. .....+++||++.+-+ -+.+|+.|+++.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 34577788888877532 2 48999999998753 43 3477899999987633 378888888763
Q ss_pred cCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 001064 181 YGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 249 (1167)
Q Consensus 181 ~~~~~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~ 249 (1167)
. ..+.+|..+... +|.. ...+|..|+.++...|++.+|..||+++++..-.-++.+-+.+..|
T Consensus 82 -~---dp~~if~~L~~~~IG~~--~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 145 (152)
T 4a1g_A 82 -S---DLHQFFEFLYNHGIGTL--SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLF 145 (152)
T ss_dssp -S---CHHHHHHHHHTTTTTTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred -C---CHHHHHHHHHHCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 2 278888887753 4443 6789999999999999999999999999997444445555555555
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0013 Score=67.96 Aligned_cols=124 Identities=16% Similarity=0.306 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHh---CC--HHHHHHHHHHHHhccCCC---------HHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEF---PLCYGYWKKYADHEARV---GS--MDKVVEVYERAVQGVTYS---------VDIWLHYCIF 176 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~---P~~~~~W~~~a~~e~~~---~~--~e~A~~l~eraL~~~P~s---------~~lw~~ya~~ 176 (1167)
.+.+.|..|++.|... .|-...|..|+.+.... |. -..-..+++||++.+-++ +.+|+.|+++
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~ 129 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence 5677888899888752 45569999999997754 32 223568999999876433 7889999885
Q ss_pred HHhhcCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHH
Q 001064 177 AINTYGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSF 246 (1167)
Q Consensus 177 ~~~~~~~~~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~---p~~~~~~~~~~~ 246 (1167)
. +..+.+|..+... +|.. ...+|..|+.++...|++.+|..||+++++. |...+...|..|
T Consensus 130 ~-------~~p~~if~~L~~~~IG~~--~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 194 (223)
T 4aez_C 130 I-------DEPVELFSFLAHHHIGQE--SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQF 194 (223)
T ss_dssp C-------SCHHHHHHHHHHTTCSTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHH
T ss_pred c-------CCHHHHHHHHHHCCcchh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 2 3566788887763 4443 6789999999999999999999999999996 544444444444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0013 Score=64.15 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhh-hccChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 370 FNKVVKLYERCLIACANYPEYWIRYVLCMEASG---SMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 370 ~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g---~~e~A~~vl~rA~~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
...++..|++.+...+...+..++|+..|.+.. ++++++.+|+..++.. |.+..+.++.+|..+.+.|++++|+..
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456778888888888889999999999998877 6679999999999876 325678888888888999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHH
Q 001064 446 YQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
++++ +++.|++..+....-.+
T Consensus 94 ~~~l-L~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 94 VRGL-LQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHH-HHHCTTCHHHHHHHHHH
T ss_pred HHHH-HhcCCCCHHHHHHHHHH
Confidence 9998 78999988775444333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0021 Score=58.95 Aligned_cols=86 Identities=14% Similarity=-0.008 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHH
Q 001064 458 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
..-++..+....+.++++.|...|++|+...+... .....+.++..++..+++ .|++++|+.++++++++.|++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34567788888899999999999999999875432 124567889999999887 9999999999999999999998887
Q ss_pred HHHHHhHh
Q 001064 537 EALIHFES 544 (1167)
Q Consensus 537 ~~~~~~e~ 544 (1167)
.++..|+.
T Consensus 84 ~n~~~~~~ 91 (104)
T 2v5f_A 84 GNLKYFEY 91 (104)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 66665554
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0027 Score=61.70 Aligned_cols=103 Identities=16% Similarity=0.237 Sum_probs=63.9
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHc
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDFNKVVKLYERCLIACANY---------PEYWIRYVLCMEAS 401 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~---g~~~~a~~~yeral~~~p~~---------~~~w~~ya~~l~~~ 401 (1167)
.||..|.. | ...+-++.|..|+.|.+.. |. .....+++||+....+. ..+|+.|+.+.
T Consensus 12 ~fE~~i~~-y-----~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 12 MLEAHMQS-Y-----KGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHTTS-C-----CSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHh-C-----CCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 47777763 2 1233488999999998764 33 34778999999875332 34788887643
Q ss_pred CCHHHHHHHHHHHHHhh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 402 GSMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
.+ +..+|.-....- -.....+|..||.+++..|++.+|..+|+..
T Consensus 82 ~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 82 SD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp SC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 445554433210 0245566666666666667777776666665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0015 Score=63.68 Aligned_cols=92 Identities=14% Similarity=-0.019 Sum_probs=78.5
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEF-P-LCYGYWKKYADHEARVGSMDKVVE 154 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~-~~~~~~ar~~ye~~l~~~-P-~~~~~W~~~a~~e~~~~~~e~A~~ 154 (1167)
.+....+.|.+.++.++.+.++.+.|+-.+-++. .+++++++.+++.+++.. | ..-++++.++-.+.+.++|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445667788888888999999999999888742 247889999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhccCCCHHH
Q 001064 155 VYERAVQGVTYSVDI 169 (1167)
Q Consensus 155 l~eraL~~~P~s~~l 169 (1167)
.++++|+..|.+...
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999988544
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0038 Score=64.45 Aligned_cols=92 Identities=22% Similarity=0.339 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHc---CC--hHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 352 TELENWHNYLDFIERD---GD--FNKVVKLYERCLIACANY---------PEYWIRYVLCMEASGSMDLAHNALARATHV 417 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~---g~--~~~a~~~yeral~~~p~~---------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~ 417 (1167)
+-++.|..|+.|.+.. |. -.....+++||+..+.+. ..+|+.|+.+. +.+..+|.-....
T Consensus 70 DPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~~ 143 (223)
T 4aez_C 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAHH 143 (223)
T ss_dssp CTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHHC
Confidence 3378899999999764 22 234678999999986433 35888888742 2344455443321
Q ss_pred h-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 418 F-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 418 ~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
- -.....+|..||.+++..|++.+|..+|+..
T Consensus 144 ~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 144 HIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 0346677777777777777777777777776
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0067 Score=72.55 Aligned_cols=161 Identities=10% Similarity=0.050 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHh-cCCCHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG---------DFNKVVKLYERCLIA-CANYPE 389 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g---------~~~~a~~~yeral~~-~p~~~~ 389 (1167)
..+-+.++.++|+..|++...+- + . .+...|..++..+-+.+ +.++|..+|++.... +.-+..
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~G---v---~-pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNG---V---Q-LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHT---C---C-CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC---C---C-CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45677889999999999988631 1 2 23556777777664433 367899999998765 344677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKHANME 468 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~a~~e 468 (1167)
.|..++..+.+.|+.++|..+|++....-..-+...|......+.+.|++++|..+|+.... .+.| +...|..++..+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 89999999999999999999999987643233556777777888899999999999998732 2455 456788888999
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 001064 469 RRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+.|+.++|..+|++..+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHT
T ss_pred hhCCCHHHHHHHHHHHHHhC
Confidence 99999999999999987754
|
| >2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00097 Score=59.69 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=59.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcC-----CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHH-HhCCCeeeCcEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNF-----GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI-QASPIQLAGRQV 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al-~~~~~~i~g~~l 1103 (1167)
..++|=+-|||..+++..|+.+..++ |.|+.+ .++... |-|+|+|.|...|-+|. ..+|.+|.||.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI--~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKI--LLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEE--EEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEE--EEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 45888899999999999999999999 999885 343332 46999999998888776 669999999999
Q ss_pred EEEe
Q 001064 1104 YIEE 1107 (1167)
Q Consensus 1104 ~V~~ 1107 (1167)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9853
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0035 Score=61.78 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=64.4
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc---CCh-HHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDF-NKVVKLYERCLIACANY---------PEYWIRYVLCMEA 400 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~---g~~-~~a~~~yeral~~~p~~---------~~~w~~ya~~l~~ 400 (1167)
.||..|. .| ...+-++.|..||.|.+.. |.. .....+++||+....++ ..+|+.|+.+.
T Consensus 5 ~fE~~i~-~~-----~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~-- 76 (164)
T 2wvi_A 5 AFEYEIR-FY-----TGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC-- 76 (164)
T ss_dssp HHHHHCC-CC-----CSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHh-hc-----CCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc--
Confidence 3666664 22 2234478899999998763 222 24577999999985432 35888888753
Q ss_pred cCCHHHHHHHHHHHHHhh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
++ +..+|.-....- -.....+|..||.+++..|++.+|..+|+..
T Consensus 77 -~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 77 -NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp -SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 444444333210 0346677777777777777777777777776
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0032 Score=62.08 Aligned_cols=118 Identities=14% Similarity=0.322 Sum_probs=81.7
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHh---CCH-HHHHHHHHHHHhccCC---------CHHHHHHHHHHHHhhcCCH
Q 001064 120 RVYDAFLAEF--PLCYGYWKKYADHEARV---GSM-DKVVEVYERAVQGVTY---------SVDIWLHYCIFAINTYGDP 184 (1167)
Q Consensus 120 ~~ye~~l~~~--P~~~~~W~~~a~~e~~~---~~~-e~A~~l~eraL~~~P~---------s~~lw~~ya~~~~~~~~~~ 184 (1167)
+.|+..|..+ .+-...|..|+.+.... |.. ..-..+++||++.+-+ -+.+|+.|+.+. ++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~----~~- 78 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC----NE- 78 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC----SC-
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc----CC-
Confidence 3455555433 23358999999987652 222 2346789999987633 378899888873 33
Q ss_pred HHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHH
Q 001064 185 ETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSF 246 (1167)
Q Consensus 185 ~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~---p~~~~~~~~~~~ 246 (1167)
.+.+|..+... +|.. ...+|..|+.++...+++.+|..||+++++. |...+...+..|
T Consensus 79 --p~~if~~L~~~~IG~~--~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F 140 (164)
T 2wvi_A 79 --PLDMYSYLHNQGIGVS--LAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQF 140 (164)
T ss_dssp --HHHHHHHHHHTTSSTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCcchh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 66778877753 4443 6789999999999999999999999999996 444444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0047 Score=72.19 Aligned_cols=91 Identities=8% Similarity=0.022 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHhh----hcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHHH
Q 001064 436 NGDIDGARAAYQLVHT----ETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYS 505 (1167)
Q Consensus 436 ~g~~~~A~~~~~~a~~----~~~P~~~---~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~---~~~~~~~~~l~~~~a 505 (1167)
.|++++|..+|++++. .+.|+++ ..+..++.++..+|++++|+.+|+++|++... .+| +.....+.++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H-p~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS-LNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHH
Confidence 5677777777777631 2345544 45778888899999999999999999987542 222 33344578889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhh
Q 001064 506 RFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 506 ~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
.+++. .|++++|..+|++||+.
T Consensus 390 ~~~~~-qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMG-LENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHh-ccCHHHHHHHHHHHHHH
Confidence 88776 99999999999999874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.014 Score=53.28 Aligned_cols=75 Identities=13% Similarity=-0.017 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVK------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 462 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~ 462 (1167)
+-.+.+|..+...++++.|...|+.|+....+ ....++..++..+.+.|++++|+..++++ +++.|++..+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL-LELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH-HhcCCCCHHHHh
Confidence 33444555555555555555555555544311 23445555555555566666666666655 455565555443
Q ss_pred HH
Q 001064 463 KH 464 (1167)
Q Consensus 463 ~~ 464 (1167)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
|
| >2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=52.75 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=61.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhc-----CCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQN-----FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~-----~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~ 1104 (1167)
-+++|.|.|||..++++.|+-+|++ =|+|.++.. . . +-|+|+|.+.+.+++.|+...+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~-~------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--L-G------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--E-T------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--c-C------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 3689999999999999999999986 268877542 1 1 578999999999999998878999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|....++.
T Consensus 78 V~P~~~~~ 85 (104)
T 2dhx_A 78 LRPAPPRA 85 (104)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 98766543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.025 Score=66.01 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHH---HHHHHHHHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIRYVLCM 398 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-----p~~~~---~w~~ya~~l 398 (1167)
+|++|+..|+++|....-.+.|..+.-+..+..++..+...|++++|+.+|+|+|... +++++ .+.++|.++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 4677888888877643334455666667778888888888888888888888888752 44554 577778888
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 001064 399 EASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~ 418 (1167)
..+|++++|..+|++|+++.
T Consensus 393 ~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHH
Confidence 88888888888888887765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.02 Score=66.86 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHH---HHHH
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIR 393 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-----p~~~~---~w~~ 393 (1167)
+...+++++|+..|++++...--.+.+.++.-+..+..++..+...|++++|+.+|+++|... +.+++ .+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445678899999999999754445566777777888888998899999999999999999762 45554 6888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFV 419 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~ 419 (1167)
+|.++..+|++++|..+|++|+++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 88888889999999999999988763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.018 Score=67.25 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=68.2
Q ss_pred HcCCHHHHHHHHHHHhh----hcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHH
Q 001064 435 QNGDIDGARAAYQLVHT----ETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQY 504 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~----~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~---~~~~~~~~~l~~~~ 504 (1167)
.+|++++|+.+|++++. .+.|++ +.++...+.++..+|++++|+.+++++|..... .+| +.....+.++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H-p~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH-PVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC-hHHHHHHHHH
Confidence 46778888888887631 123444 445777888888999999999999999987531 122 3334457888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 505 SRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 505 a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
|.+++. .|++++|..+|++|++.
T Consensus 378 a~~~~~-~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLH-QGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHH
Confidence 888776 99999999999999974
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.092 Score=49.26 Aligned_cols=98 Identities=14% Similarity=0.008 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhhhc-cChHHHHHHHHHHHHcCCHHHHHH
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL---AHNALARATHVFVK-RLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~---A~~vl~rA~~~~~p-~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
....++..|.+.+...+...+.-++||-.|.+..+... ++.+|+..+....| ..-+..+.+|....+.|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34567778888888777888999999988887665544 77777777665412 445667777888888899999998
Q ss_pred HHHHHhhhcCCChHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
.++.+ +++.|++..+......+
T Consensus 96 ~~~~l-L~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 96 YVRGL-LQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHH-HHHCTTCHHHHHHHHHH
T ss_pred HHHHH-HHhCCCCHHHHHHHHHH
Confidence 88887 78888887765444433
|
| >1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.072 Score=49.13 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=55.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeC-cEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG-RQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g-~~l~V~~ 1107 (1167)
..+.|.|-+.|... ...|...|++||.|.+.. . . ....+-.|.|.+..+|++||..||..|+| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~--~--~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHV--M--S---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEE--E--C---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEec--c--C---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 45889999999885 566779999999998743 2 1 13469999999999999999999999986 4456654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.71 Score=52.58 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=105.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhccChHHHH----
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYP-----EYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHL---- 427 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~-----~~w~~ya~~l~~-~g~~e~A~~vl~rA~~~~~p~~~~l~~---- 427 (1167)
..++.++.+.|+.++...++.........-+ .+-..+...+.. .+..+.-..+...+++-. .+.-..|+
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455566666777666666655443332222 233333333332 234444555555555533 22223332
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC-CccCchHH
Q 001064 428 --FAARFKEQNGDIDGARAAYQLVHTETSP-----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK-EHSQTLPM 499 (1167)
Q Consensus 428 --~~a~~~e~~g~~~~A~~~~~~a~~~~~P-----~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~-~~~~~~~~ 499 (1167)
.++.++...|++.+|.+++.+++.++.. ...+++..-+.++..++|+.+++.+|.+|......- .+......
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 5788999999999999999987543322 234667777888889999999999999998876321 11111222
Q ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhhcC
Q 001064 500 LYAQYSRFLHL-VSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 500 l~~~~a~~~~~-~~g~~~~Ar~i~~kal~~~p 530 (1167)
+.. ++..++. ..++++.|...|-++++.+.
T Consensus 182 i~~-~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 182 LDL-QSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHH-HHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHH-HhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 333 3444455 59999999999999987553
|
| >3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.049 Score=50.86 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=55.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeec---------CCCc-----ccccEEEEEECCHHHHHHHHHhCCCe
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN---------RKDV-----VGVCYAFVEFEDISGVQNAIQASPIQ 1097 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---------~~~g-----~~kg~afV~F~~~~~a~~Al~~~~~~ 1097 (1167)
..|.|-+.|.+.+. .+-+.|++||.|.+.- ...+ +.+. .+.++-.|+|++..+|.+||..||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~-~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDF-EVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCC-GGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeec-cccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 56778888876655 4558999999997621 1111 0000 13568899999999999999999999
Q ss_pred eeCcEeEEEecc
Q 001064 1098 LAGRQVYIEERR 1109 (1167)
Q Consensus 1098 i~g~~l~V~~~r 1109 (1167)
|+|..|-|...+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.14 Score=48.10 Aligned_cols=89 Identities=15% Similarity=-0.019 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 81 GEEDRLWNIVKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEF-P-LCYGYWKKYADHEARVGSMDKVVEVYE 157 (1167)
Q Consensus 81 ~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~-~~~~~~ar~~ye~~l~~~-P-~~~~~W~~~a~~e~~~~~~e~A~~l~e 157 (1167)
.....+.+.+..++-..++-+.|+-.+-+.. ..++.+.+.+++.++... | ..-++.+.+|-.+.+.|+|++|++.++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555555555666666666655554321 234455666666666655 4 344555566666666666666666666
Q ss_pred HHHhccCCCHHH
Q 001064 158 RAVQGVTYSVDI 169 (1167)
Q Consensus 158 raL~~~P~s~~l 169 (1167)
.+|+..|.|...
T Consensus 99 ~lL~~eP~n~QA 110 (126)
T 1nzn_A 99 GLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHCTTCHHH
T ss_pred HHHHhCCCCHHH
Confidence 666666666433
|
| >1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.14 Score=45.09 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=41.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
+-++| ++|......||.++|+.||.|. |.-.|. ..|||.|.+++.|..|+..
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidD------TsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD------TSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEET------TEEEEECSCHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 44555 9999999999999999999654 333343 2799999999999999875
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.47 E-value=1.5 Score=49.79 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhcCCCHH
Q 001064 311 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER-DGDFNKVVKLYERCLIACANYPE 389 (1167)
Q Consensus 311 ~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~-~g~~~~a~~~yeral~~~p~~~~ 389 (1167)
.+..+..+.++|.+.++.++-...+... |+++..-+.. .-..+-+.++++... .+..+.-+.+...|+.-+-..-.
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ka-k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r 94 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVT--RPFLSSISKA-KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR 94 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHT--TTGGGGSCHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHhchH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788899999888876666554 5666543322 223456777776644 34566677888888876554434
Q ss_pred HHH------HHHHHHHHcCCHHHHHHHHHHHHHhhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hc--
Q 001064 390 YWI------RYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHT---ET-- 453 (1167)
Q Consensus 390 ~w~------~ya~~l~~~g~~e~A~~vl~rA~~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~---~~-- 453 (1167)
.|+ +++.++...|++.+|..++.+.+.-+.. ...++++....++...+++.+++.+|.++.. .+
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 553 7889999999999999999998875522 1345677778888899999999999998732 11
Q ss_pred CCC-hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhh
Q 001064 454 SPG-LLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 454 ~P~-~~~~~~~~a~~e~-r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.|. ...+...-+.++. ..++|..|...|-.++....
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 121 2234566667777 78999999999999987764
|
| >3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.4 Score=44.86 Aligned_cols=110 Identities=12% Similarity=0.125 Sum_probs=63.6
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCCCceEEEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNGGVLVMVSGS 801 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~~~i~v~v~G~ 801 (1167)
...+..|+..++ .+.+.|..+|.++..++...+..+.|...|.+.-..+...++..+.++.+....+. +..++...-.
T Consensus 9 ~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~g-d~A~~~~~~~ 87 (129)
T 3hx8_A 9 EAANADFVKAYNSKDAAGVASKYMDDAAAFPPDMARVDGRQNIQKLWQGAMDMGISELKLTTLDVQESG-DFAFESGSFS 87 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEET-TEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCCCcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcCC-CEEEEEEEEE
Confidence 567899999987 68999999999987775332333455555444333333334445555555544332 2233332222
Q ss_pred EEe--cCccccc--eeEEEEEEeee-CCeEEEEcceEE
Q 001064 802 VKT--KEFCRRR--KFVQTFFLAPQ-EKGYFVLNDIFH 834 (1167)
Q Consensus 802 ~~~--~~~~~~~--~F~q~F~L~~~-~~~y~v~nd~fr 834 (1167)
++. .+. .+. ...-++++..+ +++|.|..|.|.
T Consensus 88 ~~~~~~~G-~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 88 LKAPGKDS-KLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEECTTS-CEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEeeCCCC-CeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 222 222 222 23455666777 789999999983
|
| >1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.48 Score=41.62 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=51.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeeC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1100 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g--~~kg~afV~F~~~~~a~~Al~~-~~~~i~g 1100 (1167)
++|-|++||+++|++++.+.++....+.... .+..+.+. ...+-|+|.|.+.+++..-... +|+.+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~-fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFE-FFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEE-EEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEE-EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5789999999999999999999888765433 23322221 2346799999999998888777 7887754
|
| >4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.51 Score=45.55 Aligned_cols=109 Identities=8% Similarity=0.090 Sum_probs=69.2
Q ss_pred HhHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeeccccCCCceEEEE
Q 001064 722 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLVMV 798 (1167)
Q Consensus 722 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q~~~~~~i~v~v 798 (1167)
=..++..|+..++ .+.+.|..+|.++..++ ..|....|...|.+....+..-.+. .+.+...+.....++..+|.+
T Consensus 21 i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~-~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~A~v~~ 99 (143)
T 4i4k_A 21 VAALPARIVAAWADHDADRFADVFAEDGTMI-LPGLFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGIALLIT 99 (143)
T ss_dssp HHTHHHHHHHHHHTTCHHHHHTTEEEEEEEE-ETTEEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhcCceEE-eCCCeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCCEEEEEe
Confidence 3567899999987 68999999999988776 5664455665554444443332322 233333333322233344455
Q ss_pred EEEEEecCcc---ccceeEEEEEEeeeCCeEEEEcc
Q 001064 799 SGSVKTKEFC---RRRKFVQTFFLAPQEKGYFVLND 831 (1167)
Q Consensus 799 ~G~~~~~~~~---~~~~F~q~F~L~~~~~~y~v~nd 831 (1167)
.|.+...+.. +.+.+.+|+++...+++|.|...
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~~ 135 (143)
T 4i4k_A 100 EGGILAPGETEASGDGAVRASWLAVEQDGQWRLAAY 135 (143)
T ss_dssp EEEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEEE
T ss_pred ccceecCCCCCCCcccceEEEEEEEEECCcEEEEEe
Confidence 5666555532 23668999999999999999863
|
| >1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.24 Score=44.38 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=58.2
Q ss_pred ccEEEEecCCCCC-C----HHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1031 VKSVYVRNLPSTV-T----AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~-t----~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
..+|+|.||+.++ . .+.++++|..|+++..... ++ +-.-..|.|.+.++|.+|-.. ++..++|+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lk------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cC------cceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3789999998765 2 2577999999999887542 32 223568999999999998766 79999999999
Q ss_pred EEeccCC
Q 001064 1105 IEERRPN 1111 (1167)
Q Consensus 1105 V~~~r~~ 1111 (1167)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=91.85 E-value=2.6 Score=52.93 Aligned_cols=130 Identities=13% Similarity=0.123 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 437 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g 437 (1167)
...+.++++.|..+.|+.+.+ ++..-+.++ ...|++++|.++.+. -+.+..|..+|.+..+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~~---l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKFELA---LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHHHHH---HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchheehh---hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcC
Confidence 566677788888777665442 333223332 346888888776421 246789999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH
Q 001064 438 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 517 (1167)
Q Consensus 438 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~ 517 (1167)
+++.|..+|.++ .. +-....++...|+.+....+-+.+..... + ..+...+...|++++
T Consensus 696 ~~~~A~~~y~~~-~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----------~--~~A~~~~~~~g~~~~ 754 (814)
T 3mkq_A 696 NFKLAIEAFTNA-HD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK----------F--NLAFNAYWIAGDIQG 754 (814)
T ss_dssp CHHHHHHHHHHH-TC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----------H--HHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHc-cC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----------h--HHHHHHHHHcCCHHH
Confidence 999999999986 21 12223334446777766666555554321 1 111111223788888
Q ss_pred HHHHHHHH
Q 001064 518 ARQILVDS 525 (1167)
Q Consensus 518 Ar~i~~ka 525 (1167)
|.++|.+.
T Consensus 755 a~~~~~~~ 762 (814)
T 3mkq_A 755 AKDLLIKS 762 (814)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88887765
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.50 E-value=1.3 Score=43.40 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--ccChHHH
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYP---------EYWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIH 426 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p~~~~l~ 426 (1167)
+.-++-+...+.++.|+.+...++....+++ .+.+.+|+.+...+.+..|...|++|++... ++.+...
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3334445567889999999888776633322 3677788888889999999999999987551 1111110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
..+ + -...+... .. .+...++.++.+.++..+++.++|+.+++.
T Consensus 104 ---~~~----~----~~ss~p~s-~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 104 ---PST----G----NSASTPQS-QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ---ccc----c----ccCCCccc-cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 000 0 00000000 11 234556777777788888888888888764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.43 E-value=2.2 Score=42.45 Aligned_cols=110 Identities=10% Similarity=0.069 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001064 95 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 174 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya 174 (1167)
.|.+.-+.|+-.+ |+++.|..+.+.+ ++...|..+++..+.+|+++-|+++|.++=.. ..+
T Consensus 6 ~D~~~rF~LAL~l-----g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----~~L----- 66 (177)
T 3mkq_B 6 QDPHIRFDLALEY-----GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF----DKL----- 66 (177)
T ss_dssp SCHHHHHHHHHHT-----TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----HHH-----
T ss_pred CChHHHHHHHHhc-----CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----HHH-----
Confidence 4555556665532 6888888877665 78899999999999999999999999876432 122
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001064 175 IFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 231 (1167)
Q Consensus 175 ~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~ 231 (1167)
.|+....|+.++...+-+.+.. -|. +..-......+|+++++.++|.+.
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~-~g~-------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQT-RED-------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-TTC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-Ccc-------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 2222245888887776666654 221 112222233368899999998765
|
| >3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=91.39 E-value=1.5 Score=42.37 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=70.6
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMVS 799 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~~~~i~v~v~ 799 (1167)
..++..|...++ .+.+.|..+|.++..++...|....|...|.+....+..-.+.. +.+...+.....++..+|.+.
T Consensus 9 ~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A~v~~~ 88 (146)
T 3gzr_A 9 QALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSALAVVT 88 (146)
T ss_dssp HHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEEEEEEE
Confidence 467888998887 68999999999998877566755566665554444333323322 232222222222233444444
Q ss_pred EEEE---ecCccc--cceeEEEEEEeeeCCeEEEEcceEEecc
Q 001064 800 GSVK---TKEFCR--RRKFVQTFFLAPQEKGYFVLNDIFHFLD 837 (1167)
Q Consensus 800 G~~~---~~~~~~--~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 837 (1167)
..++ ..+... ...+.+|++|...+++|.|..+--..++
T Consensus 89 ~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~ 131 (146)
T 3gzr_A 89 LIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIVN 131 (146)
T ss_dssp EEECCEECTTCCEECCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEecceeCCCCCcCCccCcEEEEEEEEECCEEEEEEEecccCc
Confidence 4442 122211 2468899999999999999998776554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.36 E-value=5.3 Score=39.72 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=55.4
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
.+.|+++.|..+.+.. ++...|.+++..-...|+++-|..+|.++-. ...+.+. +.-.|+.++-.+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~L----y~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFL----YLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHH----HHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHH----HHHhCCHHHHHH
Confidence 4567777777665442 5677888888877778888888887766532 2223222 234566665555
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
+-+.+.. .-++-..+. ...-+|+++++.++|.+
T Consensus 82 la~iA~~--~g~~n~af~----~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQT--REDFGSMLL----NTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHH--TTCHHHHHH----HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHH--CccHHHHHH----HHHHcCCHHHHHHHHHH
Confidence 5444311 222111111 12236777777777653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.31 E-value=1.8 Score=40.73 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 387 YPEYWIRYVLCMEASGSM---DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 387 ~~~~w~~ya~~l~~~g~~---e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
.+..-++||-.|.+..+. .+++.+++..+...+...-+.++.+|.-..+.|++++|+...+.+ +++.|+|..+...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l-L~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-FEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhhCCCCHHHHHH
Confidence 467778888777776544 467788888877653345677788888888999999999999987 7889998776544
Q ss_pred HHHH
Q 001064 464 HANM 467 (1167)
Q Consensus 464 ~a~~ 467 (1167)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.24 E-value=1.4 Score=41.45 Aligned_cols=91 Identities=5% Similarity=-0.083 Sum_probs=68.5
Q ss_pred CchHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHH
Q 001064 79 MSGEEDRLWNIVKAN--SS-DFSAWTALLEETEKL-AQDNIVKIRRVYDAFLAEFPL-CYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 79 ~~~a~~~l~~~l~~n--P~-d~~aw~~L~~~~~~~-~~~~~~~ar~~ye~~l~~~P~-~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
.++.+..|++..... +. ...+-+.|+-.+-+. ...++.+++.+++.++...|. .-++|+.+|--+.+.|+|++|+
T Consensus 19 ~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 19 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp CHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHH
Confidence 345566666655432 22 456666666554443 235778999999999999994 4688999999999999999999
Q ss_pred HHHHHHHhccCCCHHH
Q 001064 154 EVYERAVQGVTYSVDI 169 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~l 169 (1167)
+..+++|+..|.|...
T Consensus 99 ~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 99 RYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHTTCTTCHHH
T ss_pred HHHHHHHhhCCCCHHH
Confidence 9999999999998544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.01 E-value=2.2 Score=40.62 Aligned_cols=91 Identities=5% Similarity=-0.081 Sum_probs=69.6
Q ss_pred CchHHHHHHHHHHhC---CCCHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHH
Q 001064 79 MSGEEDRLWNIVKAN---SSDFSAWTALLEETEKL-AQDNIVKIRRVYDAFLAEFPLC-YGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 79 ~~~a~~~l~~~l~~n---P~d~~aw~~L~~~~~~~-~~~~~~~ar~~ye~~l~~~P~~-~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
.++++..|++..... .-..++-+.|+-.+-+. ...++.+.+.+++.++...|.. -++.+.+|--+.+.|+|++|+
T Consensus 18 ~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 97 (144)
T ss_dssp CHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHH
Confidence 445666777666544 45677777776655543 2367789999999999999954 567777777889999999999
Q ss_pred HHHHHHHhccCCCHHH
Q 001064 154 EVYERAVQGVTYSVDI 169 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~l 169 (1167)
+..+++|+..|.|...
T Consensus 98 ~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 98 RYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHTCCCCHHH
T ss_pred HHHHHHHhcCCCcHHH
Confidence 9999999999998543
|
| >3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.22 Score=43.97 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=41.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
.||+=++|.+....||.++|+.||.|. |.-.|. ..|||.|.+++.|..|+..
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv~---I~WidD------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNIQ---ISWIDD------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEEE---EEEEET------TEEEEEEEEECHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCEE---EEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 344449999999999999999999543 433343 2799999999999999985
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.60 E-value=1.2 Score=54.94 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=86.8
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCC-HHHHHHHHHHHHHhhh-----------------
Q 001064 360 YLDFIERDGD-FNKVVKLYERCLIACANYPEYW-IRYVLCMEASGS-MDLAHNALARATHVFV----------------- 419 (1167)
Q Consensus 360 y~~~~e~~g~-~~~a~~~yeral~~~p~~~~~w-~~ya~~l~~~g~-~e~A~~vl~rA~~~~~----------------- 419 (1167)
++.+....++ ++.++.++++.....|...-+. ..++..++..++ --+|..++.++++...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3444444555 5789999999888877654322 223333333332 2357777777765321
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 484 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kA 484 (1167)
+....+...-++|+...|+++-|+.+-+++ +.+.|.....|..++..+..+|+++.|.-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~A-V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTS-TELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHH-HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111235555688999999999999999998 8899999999999999999999999998766543
|
| >3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27 | Back alignment and structure |
|---|
Probab=90.54 E-value=0.79 Score=43.17 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=62.4
Q ss_pred HhHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCC--Cc-ce--eEeeeeccccCCCceE
Q 001064 722 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN--FT-AI--EIKTINSLGSWNGGVL 795 (1167)
Q Consensus 722 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~--~~-~~--~i~~~d~q~~~~~~i~ 795 (1167)
-...+..|+..++ .+.+.+..+|.++..+....+....|.. +|.+.+..+- +. .+ .|..+.. ..++.++
T Consensus 13 i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~~~~~G~~---ai~~~~~~~~~~~~~~~~~~~~~i~~--~~gd~a~ 87 (135)
T 3d9r_A 13 IEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKD---ELAEVYLSVFETVGFDMAYEIKEVVQ--TSADWAF 87 (135)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCEESHH---HHHHHHHHHHHHEEEEEEEEEEEEEE--EETTEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCCcccCHH---HHHHHHHHHHhhcCCceeEEEEEEEE--ecCCEEE
Confidence 4578999999998 6789999999998666432222233444 4444444431 11 22 2333322 1122333
Q ss_pred EEE--EEEEEecCcccc--ceeEEEEEEeee-CCeEEEEcceEEec
Q 001064 796 VMV--SGSVKTKEFCRR--RKFVQTFFLAPQ-EKGYFVLNDIFHFL 836 (1167)
Q Consensus 796 v~v--~G~~~~~~~~~~--~~F~q~F~L~~~-~~~y~v~nd~fr~~ 836 (1167)
+.+ .|.++..+.... ..+.-++++..+ +++|.|..++|..+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 88 VRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 333 233333211122 224567788888 88999999999765
|
| >3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.14 Score=59.12 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=44.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeC
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG 1100 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g 1100 (1167)
..++|||. +|..+++.+|.+.|++||+|.++. . ++..| .|+.|||.+.+++.+++...++...+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~--~-~~~~g---~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHF--F-YESFG---LYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEE--E-ECSSS---EEEEEECC---CCHHHHSSCCCCCCB
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEE--E-EccCC---eEEEEEeCCHHHHHHHHhccCCCccc
Confidence 35899997 799999999999999999999953 3 23222 59999999999999887665444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.70 E-value=3.7 Score=40.25 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH---------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---------IHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~---------l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
.+.-+..+...+.++.|+-+...++.+. .+++. +...+|+.+...++|..|...|+++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444555667788999988888877765 33333 6777899999999999999999987
|
| >3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28 | Back alignment and structure |
|---|
Probab=89.34 E-value=1.1 Score=44.72 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=68.2
Q ss_pred HhHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeeccccCCCceEEEE
Q 001064 722 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLVMV 798 (1167)
Q Consensus 722 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q~~~~~~i~v~v 798 (1167)
=..++..|+..++ .+.+.+..+|.++..++.+.|....|...|.+....+..-.+. .+.+...+.....++..++.+
T Consensus 18 I~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~A~v~~ 97 (172)
T 3cu3_A 18 IRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQLALMLV 97 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCCCEEEEEE
Confidence 3568899999987 6899999999998777654565455555544333333222222 232222222222233344455
Q ss_pred EEEEEecCcc---ccceeEEEEEEeeeCCeEEEEcceEEe
Q 001064 799 SGSVKTKEFC---RRRKFVQTFFLAPQEKGYFVLNDIFHF 835 (1167)
Q Consensus 799 ~G~~~~~~~~---~~~~F~q~F~L~~~~~~y~v~nd~fr~ 835 (1167)
.+.+...+.. +...+..++++...+++|.|.+.-...
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~s~ 137 (172)
T 3cu3_A 98 VIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTR 137 (172)
T ss_dssp EEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECCB
T ss_pred EEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEcCc
Confidence 5556655431 235567788888889999999876643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=89.17 E-value=3.3 Score=51.96 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 401 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~ 401 (1167)
....++++.|....+. ++ +...|..+++...+.++++.|..+|.+|- +. -.+..++...
T Consensus 662 ~l~~~~~~~A~~~~~~-----------~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~----d~----~~l~~l~~~~ 720 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-----------ES--AEMKWRALGDASLQRFNFKLAIEAFTNAH----DL----ESLFLLHSSF 720 (814)
T ss_dssp HHHHTCHHHHHHHHTT-----------CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT----CH----HHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHh-----------hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc----Ch----hhhHHHHHHc
Confidence 3455667766655432 22 24689999999999999999999999862 11 1222222334
Q ss_pred CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 402 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
++.+....+.+.+... .+ +.....++.+.|++++|.++|.++
T Consensus 721 ~~~~~~~~~~~~a~~~--~~----~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 721 NNKEGLVTLAKDAETT--GK----FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TCHHHHHHHHHHHHHT--TC----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc--Cc----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5555444433333321 11 111222344567777777776653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.93 E-value=2.7 Score=40.00 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSM---DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~---e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
.-..+.-++||-.|.+..+. .+++.+++..+...+...-+..+.+|.-..+.|+|++|+...+.+ +++.|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l-L~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-FEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH-HhcCCCcHHHH
Confidence 34567888888888776543 467778888777553245566677777788899999999999987 78899887664
Q ss_pred HHHH
Q 001064 462 IKHA 465 (1167)
Q Consensus 462 ~~~a 465 (1167)
....
T Consensus 115 ~Lk~ 118 (144)
T 1y8m_A 115 ALKS 118 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.44 E-value=4.9 Score=45.76 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHhCCCC------HHHHH----------------HHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLC------YGYWK----------------KYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~------~~~W~----------------~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
++...+...++++|.++-.. ...|. .+++.+...|++++|+..+++++..+|.+..+|
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 46677788888988887221 11132 345566778999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
..++..+. ..|+..+|++.|+++-.
T Consensus 209 ~~lm~al~-~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 209 TQLITAYY-LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 99999988 78999999999988765
|
| >3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259} | Back alignment and structure |
|---|
Probab=87.08 E-value=2.2 Score=41.07 Aligned_cols=113 Identities=8% Similarity=0.058 Sum_probs=68.4
Q ss_pred hHHHHHHHHhhh-cCcccccccccCC--ceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCC-CceEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDA--SSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWN-GGVLVMV 798 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~--s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~-~~i~v~v 798 (1167)
..-...||.-|+ .+.+.|..+|.++ .++++..|....|...+.+--+.+...+ ..+.|+..|.+-..+ +..+|.+
T Consensus 11 ~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g~~l~G~~ai~~~w~~~f~~~-~~~~i~~~~v~v~~~gd~A~v~~ 89 (144)
T 3gwr_A 11 EAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRAAVAAGWRSMFGAA-GRFRLQVKAVHEIRQADHVIRIV 89 (144)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTCCCEESHHHHHHHHHHHHHHH-CCEEEEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCCCCcccHHHHHHHHHHHHcCC-CcEEEEEEEEEEEecCCEEEEEE
Confidence 455788898886 7899999999987 4555655555666554433222222211 134444444333222 2345556
Q ss_pred EEEEEecCc-cccceeEEEEEEeeeCCeEEEEcceEEec
Q 001064 799 SGSVKTKEF-CRRRKFVQTFFLAPQEKGYFVLNDIFHFL 836 (1167)
Q Consensus 799 ~G~~~~~~~-~~~~~F~q~F~L~~~~~~y~v~nd~fr~~ 836 (1167)
...+...+. .....+.-|+++..++++|.|...--..+
T Consensus 90 ~e~~~~~~~~g~~~~~r~T~V~~r~~g~WrivhhH~S~~ 128 (144)
T 3gwr_A 90 DEFLTIGDETAPRPAILATNVYRREADGWRMVLHHASPL 128 (144)
T ss_dssp EEEEEETTCSSCCCCEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred EEEEEecCCCCceeeEEEEEEEEEECCEEEEEEEecCCC
Confidence 666766322 12256778888888888999988766433
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.76 E-value=3.6 Score=48.12 Aligned_cols=169 Identities=7% Similarity=0.029 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHH----------H----HHHHHHhhhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 422 LPEIHLFAARFKEQNGDIDGA----------R----AAYQLVHTETSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIA 486 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A----------~----~~~~~a~~~~~P~-~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~ 486 (1167)
..++|+.+..+++..|++... | ..+..+.++.+.+ ...+|......+...+.++.|..+..++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 455677777777766655431 2 2333333444443 23456666667777889999999999885
Q ss_pred hhhCCCccC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH-------HHHHHHHHhHhhCCChhHHHHHHHH
Q 001064 487 IEKGKEHSQ-TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK-------PLLEALIHFESIQSSPKQIDFLEQL 558 (1167)
Q Consensus 487 ~~~~~~~~~-~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~-------~l~~~~~~~e~~~~~~~~~~~ar~l 558 (1167)
+|....+. .....+..+|++... .+++.+|.+.+..|+...|.+. .++.-++-..+-.|.-.. |.+
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~----r~l 332 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE----LSF 332 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC----HHH
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC----hHH
Confidence 44221111 112233455666554 9999999999999999887542 111112222222222111 222
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHhhhCC
Q 001064 559 VDKFLMSNSDSPSTANAAEREELSCVFLEFLG--LFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 559 ~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~--~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
|... .+ ...+.-|.++.. ..||+.....+.+++...|..
T Consensus 333 f~q~---------~l-----~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~ 373 (523)
T 4b4t_S 333 FHQS---------NM-----QKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLK 373 (523)
T ss_dssp HTTT---------SC-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH
T ss_pred hhch---------hH-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceecc
Confidence 2210 00 012333444433 458999999999888888754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.38 E-value=24 Score=40.85 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-hCCCccCc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIE-KGKEHSQT 496 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~-~~~~~~~~ 496 (1167)
..+...++.+++..|++.+|..++..+..+..-. -.++++.-+.++...+|+.+|..+++++.... ....+...
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 4566788999999999999999999875543211 24567777888888999999999999986432 22111111
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
...++...+.+.. ..+++.+|-..|..+++.
T Consensus 217 k~~~~~~~~~~~~-~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISL-HKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhc
Confidence 1223445565544 489999999999888764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.46 E-value=5.1 Score=49.42 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHH
Q 001064 136 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRL 190 (1167)
Q Consensus 136 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~ 190 (1167)
...-+++++..++++-|.++-++|+..-|..-.-|..++..++ ..++++.|+-.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi-~l~d~e~ALLt 393 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHI-KKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHH-HhccHHHHHHH
Confidence 3333555566666666666666666666666666666666666 45666666543
|
| >2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.43 E-value=1.7 Score=38.49 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=49.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCC--cccccEEEEEECCHHHHHHHHHh-CCCeeeCc-----E
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR-----Q 1102 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~-----~ 1102 (1167)
+-+|.|+.||+.+|++++.+.++..=.+.... .+..+.+ ....+-|+|.|.+.+++..-.+. +|..+-+. +
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~-fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFE-FFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECC-CCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEE-EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46899999999999998766655433321111 1111111 11235789999999999988877 77776543 2
Q ss_pred eEEEec
Q 001064 1103 VYIEER 1108 (1167)
Q Consensus 1103 l~V~~~ 1108 (1167)
..||++
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445554
|
| >3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=83.85 E-value=14 Score=35.63 Aligned_cols=111 Identities=11% Similarity=0.150 Sum_probs=62.1
Q ss_pred hhHhHHHHHHHHhhh-cCcccccccccCCceEEEE-cCCcccchhchHHHHHHHhcC----CCcceeEeeeeccccCCCc
Q 001064 720 QVGSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRV-DGDSTESASSMLDIHSLVISL----NFTAIEIKTINSLGSWNGG 793 (1167)
Q Consensus 720 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~-~g~~~~~~~~~~~i~~~~~~l----~~~~~~i~~~d~q~~~~~~ 793 (1167)
+--...+..|+..++ .+.+.|..+|.++..++.. .+....|. ++|.+.+..+ +...+.+..+.. .++.
T Consensus 20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~~~~~~G~---~~i~~~~~~~~~~~~~~~i~~~~i~~---~~gd 93 (156)
T 3h51_A 20 REVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVSNEVRASR---EQIENYFEMFLTKKPKGVINYRTVRL---LDDD 93 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSCSSCBCSH---HHHHHHHHHHGGGCCEEEEEEEEEEE---CSSS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCCccccCH---HHHHHHHHHHHhhCCCCcccceEEEE---ecCC
Confidence 334677888998886 7899999999997655421 12223444 4455444432 211222223322 2222
Q ss_pred eEEEEEEEE--Ee---cCccccceeEEEEEEeeeCCeEEEEcceEEecc
Q 001064 794 VLVMVSGSV--KT---KEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 837 (1167)
Q Consensus 794 i~v~v~G~~--~~---~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 837 (1167)
+.+|+|.+ .. ++.........|+++...+++|.|..+-+..+.
T Consensus 94 -~A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p 141 (156)
T 3h51_A 94 -SAVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMP 141 (156)
T ss_dssp -EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred -eEEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCC
Confidence 33344443 32 121112334667777778999999998886654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.83 E-value=3.6 Score=47.65 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC-CChH----HHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS-PGLL----EAI 461 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~-P~~~----~~~ 461 (1167)
..+..+|.++...|++++|.++|.++..... ....++++...++....+|+..+...+.++..... .++. .+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3677888888888888888888888776442 12345666666666677777777777777521111 1111 123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 462 IKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 462 ~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
...+.++...++|..|...|-.++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 334444555567777777777666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.95 E-value=3.7 Score=46.80 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
...+++.+...|++.+++..+++++..+|.+..+|..++..+...|+..+|+.+|+++..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555666777777777777777777777777777666666777777666666554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.45 E-value=7.9 Score=44.71 Aligned_cols=96 Identities=9% Similarity=-0.015 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-Ch----HHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACA---NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-LP----EIH 426 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p---~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-~~----~l~ 426 (1167)
..+..+++++.+.||++.|..+|.++...|. +-.++|+..+.+....+++..+...+.++..+.... ++ .+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4688999999999999999999999998874 345788888888888899999999999997765321 22 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
...+.++...+++..|...|-.++
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 445666667899999988887763
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.29 E-value=1e+02 Score=37.11 Aligned_cols=205 Identities=11% Similarity=0.062 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF-IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 404 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~-~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~ 404 (1167)
++.+.|...|....+. ..+++.+...+...+.+ ....+...++..++.+.+... .+..+....+.+....|+.
T Consensus 228 ~d~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 QDAENARLMIPSLAQA-----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HCHHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHhhhhc-----cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHHCCCH
Confidence 3556676666655431 11444433322222322 223343557778888876553 4443333333344467999
Q ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----------hc------C-----CC---hHH
Q 001064 405 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-----------ET------S-----PG---LLE 459 (1167)
Q Consensus 405 e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-----------~~------~-----P~---~~~ 459 (1167)
+.|...+.+..... .......+-.++.++..|+.++|..+|+++.. ++ . +. ...
T Consensus 302 ~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~ 380 (618)
T 1qsa_A 302 RGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALT 380 (618)
T ss_dssp HHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHH
T ss_pred HHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhc
Confidence 99999887665422 34455556667888999999999999987511 00 0 00 000
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH---------------
Q 001064 460 --AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL--------------- 522 (1167)
Q Consensus 460 --~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~--------------- 522 (1167)
--+..+..+...|....|...+..++.... +.-...++.+... .|..+.+....
T Consensus 381 ~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--------~~~~~~la~~a~~-~~~~~~~v~~~~~~~~~~~~~~~~P~ 451 (618)
T 1qsa_A 381 QGPEMARVRELMYWNLDNTARSEWANLVKSKS--------KTEQAQLARYAFN-NQWWDLSVQATIAGKLWDHLEERFPL 451 (618)
T ss_dssp HSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHH-TTCHHHHHHHHHHTTCTTCHHHHSCC
T ss_pred cChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--------HHHHHHHHHHHHH-CCChHHHHHHHHHHHhhcchhhhCCc
Confidence 124455566677888888887777665321 1122234444333 55555554333
Q ss_pred ------HHHHhhcCCCHHHHHHHHHhHhhC
Q 001064 523 ------VDSLDHVQLSKPLLEALIHFESIQ 546 (1167)
Q Consensus 523 ------~kal~~~p~~~~l~~~~~~~e~~~ 546 (1167)
+++.+...-++.+....+..|...
T Consensus 452 ~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f 481 (618)
T 1qsa_A 452 AYNDLFKRYTSGKEIPQSYAMAIARQESAW 481 (618)
T ss_dssp TTHHHHHHHHTTSSSCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 233333344456666667777664
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.55 E-value=22 Score=37.65 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH----HHH
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM----ERR 470 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~----e~r 470 (1167)
+.-+.+.|++++|+..+...++.. |.+..+..++..+++-.|+++.|.+-++.+ .+++|+....-..|..+ ..|
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~-a~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS-IKLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCchhhHHHHHHHHHHHHHHHH
Q ss_pred c------------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 471 L------------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 471 ~------------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
. |.-......+-+|+... ..|+.++|..+-.+|++.-|..
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~----------------------~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSM----------------------VSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHH----------------------HHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHh----------------------hcCCHHHHHHHHHHHHhcCccc
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1167 | ||||
| d1gy7a_ | 121 | d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {B | 1e-32 | |
| d1gy6a_ | 125 | d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {R | 2e-32 | |
| d1zo2a1 | 117 | d.17.4.2 (A:10-126) Nuclear transport factor-2 (NT | 2e-31 | |
| d1jkga_ | 139 | d.17.4.2 (A:) NTF2-related export protein 1 (p15) | 3e-29 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 5e-29 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 5e-18 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 7e-07 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 8e-04 | |
| d2qiya1 | 139 | d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {B | 4e-26 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-10 | |
| d2cq4a1 | 101 | d.58.7.1 (A:132-232) RNA binding protein 23 {Human | 2e-10 | |
| d1x5ta1 | 83 | d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Hu | 4e-10 | |
| d2cpha1 | 94 | d.58.7.1 (A:454-547) Probable RNA-binding protein | 4e-10 | |
| d1x0fa1 | 75 | d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 | 6e-10 | |
| d1h2vz_ | 93 | d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro | 1e-09 | |
| d1l3ka1 | 84 | d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN | 1e-09 | |
| d1x4ba1 | 103 | d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle | 2e-09 | |
| d1uawa_ | 77 | d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax | 2e-09 | |
| d1b7fa2 | 85 | d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil | 3e-09 | |
| d1hd0a_ | 75 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 4e-09 | |
| d2msta_ | 75 | d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 | 5e-09 | |
| d1b7fa1 | 82 | d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil | 7e-09 | |
| d1cvja1 | 80 | d.58.7.1 (A:11-90) Poly(A)-binding protein {Human | 8e-09 | |
| d2adba1 | 108 | d.58.7.1 (A:177-284) Polypyrimidine tract-binding | 1e-08 | |
| d1fjca_ | 96 | d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice | 2e-08 | |
| d1no8a_ | 78 | d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu | 3e-08 | |
| d1whwa_ | 99 | d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm | 3e-08 | |
| d2f9da1 | 114 | d.58.7.1 (A:12-125) Pre-mRNA branch site protein p | 3e-08 | |
| d2cqga1 | 90 | d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD | 4e-08 | |
| d1fxla1 | 82 | d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom | 5e-08 | |
| d2cpea1 | 101 | d.58.7.1 (A:353-453) RNA-binding protein EWS {Huma | 6e-08 | |
| d1wf0a_ | 88 | d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 { | 6e-08 | |
| d1l3ka2 | 79 | d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 | 6e-08 | |
| d1u2fa_ | 90 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 7e-08 | |
| d2cqba1 | 89 | d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer | 7e-08 | |
| d1x5ua1 | 93 | d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu | 8e-08 | |
| d2cqda1 | 103 | d.58.7.1 (A:1-103) RNA-binding region containing p | 8e-08 | |
| d1x4aa1 | 95 | d.58.7.1 (A:9-103) Splicing factor, arginine/serin | 1e-07 | |
| d2cpfa1 | 85 | d.58.7.1 (A:362-446) Probable RNA-binding protein | 1e-07 | |
| d2cqca1 | 83 | d.58.7.1 (A:109-191) Arginine/serine-rich splicing | 1e-07 | |
| d2disa1 | 96 | d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 { | 2e-07 | |
| d1fxla2 | 85 | d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho | 2e-07 | |
| d2ghpa3 | 86 | d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splici | 2e-07 | |
| d2cpya1 | 103 | d.58.7.1 (A:536-638) RNA-binding protein 12 {Human | 4e-07 | |
| d2cq0a1 | 90 | d.58.7.1 (A:231-320) Eukaryotic translation initia | 4e-07 | |
| d2cqia1 | 90 | d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa | 4e-07 | |
| d1u6fa1 | 139 | d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa | 5e-07 | |
| d1wf2a_ | 98 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 6e-07 | |
| d2cpja1 | 86 | d.58.7.1 (A:65-150) Non-POU domain-containing octa | 9e-07 | |
| d2cpda1 | 86 | d.58.7.1 (A:223-308) APOBEC1 stimulating protein { | 1e-06 | |
| d2ghpa2 | 75 | d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicin | 1e-06 | |
| d1zh5a2 | 85 | d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo | 1e-06 | |
| d1x4ga1 | 96 | d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s | 2e-06 | |
| d1cvja2 | 89 | d.58.7.1 (A:91-179) Poly(A)-binding protein {Human | 3e-06 | |
| d2cqha1 | 80 | d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 is | 3e-06 | |
| d2cq3a1 | 93 | d.58.7.1 (A:110-202) RNA-binding protein 9 {Human | 4e-06 | |
| d1wi8a_ | 104 | d.58.7.1 (A:) Eukaryotic translation initiation fa | 5e-06 | |
| d1nu4a_ | 91 | d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo | 5e-06 | |
| d1x4ha1 | 98 | d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse ( | 6e-06 | |
| d2u2fa_ | 85 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 7e-06 | |
| d1weza_ | 102 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 1e-05 | |
| d1fjeb1 | 91 | d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesoc | 2e-05 | |
| d1p1ta_ | 104 | d.58.7.1 (A:) Cleavage stimulation factor, 64 kda | 2e-05 | |
| d1rk8a_ | 88 | d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr | 2e-05 | |
| d1wwha1 | 81 | d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus mu | 2e-05 | |
| d2adca1 | 109 | d.58.7.1 (A:335-443) Polypyrimidine tract-binding | 3e-05 | |
| d2ghpa1 | 81 | d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splici | 3e-05 | |
| d2cqpa1 | 86 | d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous | 4e-05 | |
| d1x5sa1 | 90 | d.58.7.1 (A:8-97) Cold-inducible RNA-binding prote | 6e-05 | |
| d1wexa_ | 104 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 6e-05 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | d.58.7.3 (A:) 2e-04 | ||
| d2adca2 | 88 | d.58.7.1 (A:444-531) Polypyrimidine tract-binding | 2e-04 | |
| d1wela1 | 112 | d.58.7.1 (A:412-523) RNA-binding protein 12 {Human | 2e-04 | |
| d2j01p1 | 146 | c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T | 2e-04 | |
| d2cpza1 | 102 | d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin | 3e-04 | |
| d3begb1 | 87 | d.58.7.1 (B:121-207) Splicing factor, arginine/ser | 3e-04 | |
| d1u1qa_ | 183 | d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1 | 4e-04 | |
| d1u1qa_ | 183 | d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1 | 7e-04 | |
| d1wg5a_ | 104 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 4e-04 | |
| d2gycj1 | 140 | c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E | 5e-04 | |
| d2cpxa1 | 102 | d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 | 8e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 | |
| d1x4ea1 | 72 | d.58.7.1 (A:8-79) RNA-binding motif, single-strand | 0.002 | |
| d1wg4a_ | 98 | d.58.7.1 (A:) Splicing factor, arginine/serine-ric | 0.002 | |
| d1wg1a_ | 88 | d.58.7.1 (A:) Probable RNA-binding protein KIAA157 | 0.002 | |
| d1whya_ | 97 | d.58.7.1 (A:) Putative RNA-binding protein 15B, Rb | 0.003 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.004 |
| >d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 120 bits (303), Expect = 1e-32
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 720 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 779
+ F YY + Y + S + T DI ++SL F +
Sbjct: 4 TLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTF----ETSQLQGAKDIVEKLVSLPFQKV 59
Query: 780 --EIKTINS-LGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 833
I T+++ S G VLVM++G + E ++F Q F L P Y+V NDIF
Sbjct: 60 QHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIF 116
|
| >d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 119 bits (301), Expect = 2e-32
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 720 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 779
Q+GS F+ YYQ+ + Y DAS + + I + SL F I
Sbjct: 7 QIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTW----EGQQFQGKAAIVEKLSSLPFQKI 62
Query: 780 --EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 837
I + + + ++ MV G +K E F Q F L + ND+F
Sbjct: 63 QHSITAQDHQPTPDSCIISMVVGQLKADE-DPIMGFHQMFLLKNINDAWVCTNDMFRLAL 121
Query: 838 EE 839
Sbjct: 122 HN 123
|
| >d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Cryptosporidium parvum [TaxId: 5807]
Score = 116 bits (293), Expect = 2e-31
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 720 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 779
Q+G FV YYQ Q + Y S + D +I + SLNF +
Sbjct: 3 QIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED----TQFQGQANIVNKFNSLNFQRV 58
Query: 780 --EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ-EKGYFVLNDIF 833
EI ++ S N G +V V+G V+ + + KF Q F L P G+ + ND+F
Sbjct: 59 QFEITRVDCQPSPNNGSIVFVTGDVRIDD-GQPLKFSQVFNLMPSGNGGFMIFNDLF 114
|
| >d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-related export protein 1 (p15) species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (279), Expect = 3e-29
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 719 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA 778
+ FV YY + ++ L+ + Y ++++ + + S + L +
Sbjct: 13 CRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVW----NGNAVSGQESLSEFFEMLPSSE 68
Query: 779 IEIKTINS------LGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG----YFV 828
+I ++ VLV++ GSVK + ++R F Q F L Q + +
Sbjct: 69 FQISVVDCQPVHDEATPSQTTVLVVICGSVKFEG-NKQRDFNQNFILTAQASPSNTVWKI 127
Query: 829 LNDIFHFLD 837
+D F F D
Sbjct: 128 ASDCFRFQD 136
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 116 bits (291), Expect = 5e-29
Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 36/284 (12%)
Query: 348 PLSVTELENWHNYLDFIE--------RDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 399
P +++ W Y+ + + + +V+ YE+CL+ ++P+ W +E
Sbjct: 2 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 61
Query: 400 ASG--------------SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 445
S D A N RA +K+ ++ A ++E + +
Sbjct: 62 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121
Query: 446 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 505
Y + I++ RR ++ ++++A + + H +Y +
Sbjct: 122 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH------VYVTAA 175
Query: 506 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 565
+ S++ A +I L + A I + S + + L ++ L S
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL---NEDNNTRVLFERVLTS 232
Query: 566 NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 609
S P + E+ FL F GD I K E R F
Sbjct: 233 GSLPPE-----KSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.9 bits (206), Expect = 5e-18
Identities = 48/276 (17%), Positives = 93/276 (33%), Gaps = 30/276 (10%)
Query: 136 WKKYADHE--------ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF----------- 176
WKKY E + +V+ YE+ + + + DIW +
Sbjct: 11 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 70
Query: 177 --AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234
N + ++ER ++ + + L+ Y +YE + ++ +V IY R+L
Sbjct: 71 GDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128
Query: 235 PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 294
+ + +FA R +++ + A A E D
Sbjct: 129 EDIDPTLVYIQYMKFA--RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-K 185
Query: 295 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL 354
K GL + ++ +Y+ + E ++ + FE + P E+
Sbjct: 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL--PPEKSGEI 243
Query: 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY 390
W +L F GD ++K+ +R A E
Sbjct: 244 --WARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.0 bits (118), Expect = 7e-07
Identities = 34/304 (11%), Positives = 85/304 (27%), Gaps = 30/304 (9%)
Query: 207 LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEV-- 264
+W KYI++E E+ R +++ + L L ++
Sbjct: 10 MWKKYIQWEKSNPLR----------TEDQTLITKRVMFAYE-----QCLLVLGHHPDIWY 54
Query: 265 DAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 324
+AA ++ N + +A + +S L + L A + +
Sbjct: 55 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA---DYEES 111
Query: 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 384
+++ + + + + Y+ F R ++++
Sbjct: 112 RMKYEKVHSIYNRLLAIEDIDPTLV-------YIQYMKFARRAEGIKSGRMIFKKAREDA 164
Query: 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444
++ L + +PE L + + + R
Sbjct: 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 224
Query: 445 AYQLVHTE--TSPGLLEAIIKH-ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 501
++ V T P I E +G+L + ++ + + + +L
Sbjct: 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLV 284
Query: 502 AQYS 505
+Y
Sbjct: 285 DRYK 288
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.7 bits (94), Expect = 8e-04
Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 6/136 (4%)
Query: 87 WNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV 146
+ + + E + ++++ L ++ Y Y D+ + +
Sbjct: 158 KKAREDARTRHHVYVTAALM-EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 216
Query: 147 GSMDKVVEVYERAVQGVTYSVD----IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 202
+ ++ER + + + IW + F N GD +I ++ +R +Y
Sbjct: 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN-IGDLASILKVEKRRFTAFREEY 275
Query: 203 LSFPLWDKYIEYEYMQ 218
Y++M
Sbjct: 276 EGKETALLVDRYKFMD 291
|
| >d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: UBP3-associated protein BRE5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 102 bits (256), Expect = 4e-26
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 20/138 (14%)
Query: 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASS-----------MLD 766
+ F+ YY+ ++ P + FY+ + + + S + +
Sbjct: 3 VQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGREN 62
Query: 767 IHSLVISLNFTAIEIKT------INSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLA 820
I+ + +K G + +L+M +G + KF QTF L
Sbjct: 63 INKFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTG-TPVYKFCQTFILL 121
Query: 821 PQEKG--YFVLNDIFHFL 836
P G + + NDI F+
Sbjct: 122 PSSNGSTFDITNDIIRFI 139
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (150), Expect = 1e-10
Identities = 55/391 (14%), Positives = 109/391 (27%), Gaps = 28/391 (7%)
Query: 103 LLEETEKLAQD-NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQ 161
+E + Q + R + P G + + +D+ A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 162 GVTYSVDIWLH----YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM 217
+ + + Y L + G L+ L +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 218 QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSE 277
Q S + E A + L + T A + +
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 278 TGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFET 337
G A + A + A + L+ ++ +A
Sbjct: 182 QGEIWLAIHHFEK--AVTLDPNFLDAYINLGNVLK-----EARIFDRAVAA--------- 225
Query: 338 AIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 397
Y LS N G + + Y R + ++P+ +
Sbjct: 226 -----YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 398 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL 457
++ GS+ A + A + ++ A +EQ G+I+ A Y+ E P
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRKA-LEVFPEF 338
Query: 458 LEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488
A A++ ++ G L++A Y++AI I
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA binding protein 23 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (137), Expect = 2e-10
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1022 DSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEF 1081
D+L +E + ++V+ L + + ++E+ F G+++ D + +R A+VEF
Sbjct: 9 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEF 67
Query: 1082 EDISGVQNAIQASPIQLAGRQVYIEERRP 1110
+I V AI + +L G + ++ +
Sbjct: 68 CEIQSVPLAIGLTGQRLLGVPIIVQASQA 96
|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 4e-10
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ NL + + + F FG I +R+ YAF+ F AI+A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 1094 -SPIQLAGRQVYIE--ERRPNTG 1113
+ L R + + ++ + G
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSKG 83
|
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.3 bits (133), Expect = 4e-10
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ VRN+P EI E F FG +K + + + FV+F + A
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 1092 QASP--IQLAGRQVYIE 1106
A L GR++ +E
Sbjct: 69 NALCHSTHLYGRRLVLE 85
|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein D0 (AUF1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (131), Expect = 6e-10
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V L +I E F FG ++ + K + F+ F++ V+ ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESI-ELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 1094 SPIQLAGRQVYIE 1106
+ + I+
Sbjct: 61 KYHNVGLSKCEIK 73
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (130), Expect = 1e-09
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++YV NL T +I E F G IK + ++ + FVE+ + +NA+
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKI-IMGLDKMKKTACGFCFVEYYSRADAENAM 66
Query: 1092 QA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1123
+ + +L R + + G + GR
Sbjct: 67 RYINGTRLDDRIIRTDW--------DAGFKEGR 91
|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (129), Expect = 1e-09
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+ +++ +++ L T + F+ +G + D V +R+ + FV + +
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 1087 VQNAIQASPIQLAGRQVYIEE 1107
V A+ A P ++ GR V +
Sbjct: 61 VDAAMNARPHKVDGRVVEPKR 81
|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins A2/B1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (129), Expect = 2e-09
Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
++ + + +++ L T + ++ +G++ V +R+ + FV F ++
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDC-VVMRDPASKRSRGFGFVTFSSMAE 74
Query: 1087 VQNAIQASPIQLAGRQVYIEERRP 1110
V A+ A P + GR V +
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVA 98
|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.7 bits (126), Expect = 2e-09
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ L T + E F FG +K + +R+ + FV F D +GV +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKEC-LVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 1094 SPIQLAGRQV 1103
S +L + +
Sbjct: 62 SRHELDSKTI 71
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 53.0 bits (127), Expect = 3e-09
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
++YV NLP T+T +++ F +G I +R++ AFV + Q AI
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQK-NILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 1093 A---SPIQLAGRQVYIE 1106
A + + + +
Sbjct: 67 ALNNVIPEGGSQPLSVR 83
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (125), Expect = 4e-09
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ L T ++++ F FG + D + + FV F++ V +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEV-VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 1094 SPIQLAGRQVYIEE 1107
+L G+ + +
Sbjct: 61 KEHKLNGKVIDPKR 74
|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Neural RNA-binding protein Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.7 bits (123), Expect = 5e-09
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V L T +++ F+ FG++ + + ++ + FV FE V+ +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDA-MLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 1094 SPIQLAGRQVYIEE 1107
++ + V ++
Sbjct: 61 HFHEINNKMVECKK 74
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 51.5 bits (123), Expect = 7e-09
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
++ V LP +T E+ F+ G I +R+ K YAFV+F Q AI+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPI-NTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 1093 A-SPIQLAGRQVYIEERRP 1110
+ I + +++ + RP
Sbjct: 63 VLNGITVRNKRLKVSYARP 81
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (123), Expect = 8e-09
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
S+YV +L VT + E+F G I R+ + YA+V F+ + + A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPI-LSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
Query: 1093 A-SPIQLAGRQVYIE 1106
+ + G+ V I
Sbjct: 61 TMNFDVIKGKPVRIM 75
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (123), Expect = 1e-08
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
+ V + V NL VT + + F FG + F +N + A +++ D
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQ-----FQALLQYADPVSA 58
Query: 1088 QNAIQA---SPIQLAGRQVYIEERRPNTGSTSRGGRRGR 1123
Q+A + I A + I+ + + + + R
Sbjct: 59 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSR 97
|
| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Score = 50.4 bits (120), Expect = 2e-08
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 1010 SHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK 1069
SHM E D +++ +NL +T E++E F++ I+ +
Sbjct: 1 SHMLE------DPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQ 48
Query: 1070 DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
D A++EF+ + + ++ ++ GR V + + +GG RG
Sbjct: 49 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY------TGEKGGTRG 96
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.5 bits (118), Expect = 3e-08
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+ V NL V+ +I+E F FG +K V + + A V FE + A++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKK--AAVHYDRSGRSLGTADVHFERKADALKAMKQ 60
Query: 1094 -SPIQLAGRQVYIE 1106
+ + L GR + I+
Sbjct: 61 YNGVPLDGRPMNIQ 74
|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.1 bits (119), Expect = 3e-08
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++VRNL T + ++E+ F +G + + + + +AFV F A
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPL-SELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
GR +++ ++ G G
Sbjct: 70 VDGQVFQGRMLHVLPSTIKKEASQSGPSSG 99
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (121), Expect = 3e-08
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ +Y+RNLP +TA E+ + F +G I+ V A+V +EDI +NA
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR----GTAYVVYEDIFDAKNAC 63
Query: 1092 QA-SPIQLAGRQVYIEERRPN 1111
S + R + + N
Sbjct: 64 DHLSGFNVCNRYLVVLYYNAN 84
|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 4e-08
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
+ + V LP T +++E F FG + ++ K + FV F +
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVL-MVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 1090 AIQASPIQLAGRQVYIEERRP 1110
+ + + GR +
Sbjct: 66 VMSQRHM-IDGRWCDCKLPNS 85
|
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 5e-08
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
++ V LP +T E F + G I+ VR++ + Y FV + D + AI
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESC-KLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 1093 A-SPIQLAGRQVYIEERRPN 1111
+ ++L + + + RP+
Sbjct: 63 TLNGLRLQTKTIKVSYARPS 82
|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein EWS species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (117), Expect = 6e-08
Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV-------FVRNRKDVVGVCYAFV 1079
++ + ++YV+ L +VT ++ + F+ G +K + +++ A V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 1080 EFEDISGVQNAIQA-SPIQLAGRQVYIEERRPN 1111
+ED + A++ G ++ + R
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 6e-08
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
V+V +T E+ E F +G + +AFV F D Q+
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGD------VMDVFIPKPFRAFAFVTFADDQIAQSLC 59
Query: 1092 QASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
+ + G V+I P +++ G G
Sbjct: 60 G-EDLIIKGISVHISNAEPK-HNSNSGPSSG 88
|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 6e-08
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
VK ++V + + + F+ + + +R +AFV F+D V
Sbjct: 2 VKKIFVGGIKEDTEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 1091 IQASPIQLAGRQVYIEE 1107
+ + G + +
Sbjct: 61 VIQKYHTVNGHNCEVRK 77
|
| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 7e-08
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
+ +YV N+P +T + + F R+ G V + +AF+EF +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 1088 QNAIQASPIQLAGRQVYIEERRPN 1111
A+ I G+ + I RRP+
Sbjct: 62 TQAMAFDGIIFQGQSLKI--RRPH 83
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 7e-08
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ +YV L V + F FG I D + + +AFVEFE AI
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
Query: 1092 QA-SPIQLAGRQVYIEERRP 1110
+ +L GR + + +P
Sbjct: 65 DNMNESELFGRTIRVNLAKP 84
|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 8e-08
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+ + +VYV L V+ + E F G + + ++R Y FVEF
Sbjct: 5 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPV-VNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRPN 1111
AI+ I+L G+ + + + +
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKASAH 89
|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding region containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (117), Expect = 8e-08
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++V LP T + + F+ FG I+ V + +R+ Y FV D + + A
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEA-VVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 1092 QASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1126
+ + GR+ + G+ R + G G
Sbjct: 70 KDPNPIIDGRKANVNLAYL--GAKPRSLQTGFAIG 102
|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 1e-07
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV NLP + +IE+ F +G I+ + + G +AFVEFED ++A+
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIR----DIDLKNRRGGPPFAFVEFEDPRDAEDAVYG 72
Query: 1094 -SPIQLAGRQVYIEERRPNTGS 1114
G ++ +E R G+
Sbjct: 73 RDGYDYDGYRLRVEFPRSGRGT 94
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.5 bits (115), Expect = 1e-07
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 1035 YVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV--CYAFVEFEDISGVQNAIQ 1092
+++NL + T ++ F G IK + + K V + + FVE++ Q A++
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 1093 A-SPIQLAGRQVYIEERRPNT 1112
+ G ++ + T
Sbjct: 62 QLQGHTVDGHKLEVRISERAT 82
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (114), Expect = 1e-07
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ V L T ++ E F +G I D V +++ +AFV FE++ + A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 68
Query: 1092 QA-SPIQLAGRQVYI 1105
+ + ++L GR++ +
Sbjct: 69 ERANGMELDGRRIRV 83
|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (114), Expect = 2e-07
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGV-CYAFVEFEDISGVQNAIQ 1092
+++ +P EI EE D + + D + +AFVE+E A +
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 1093 A---SPIQLAGRQVYIEERRP 1110
IQL G Q+ ++ P
Sbjct: 64 KLMPGRIQLWGHQIAVDWAEP 84
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (113), Expect = 2e-07
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+YV LP T+T E+E+ F +GRI + ++ V F+ F+ + AI+
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRII-TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.8 bits (113), Expect = 2e-07
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 1030 EVKSVYVRNLPSTVTAFE-IEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1088
E + + +RNL + + + E F+ FG I+ + ++ C AF+ FE+ +
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 1089 NAIQASPIQLAGRQVYIE--ERRP 1110
A+Q + L R++ + +++P
Sbjct: 63 RALQMNRSLLGNREISVSLADKKP 86
|
| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 4e-07
Identities = 20/104 (19%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 1028 EGEVKS----VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED 1083
EG+V S ++ N+P ++T ++ + + + + V V + G+ A V+F++
Sbjct: 1 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKN 59
Query: 1084 ISGVQNAIQASPIQLAGRQVYI-----EERRPNTGSTSRGGRRG 1122
+ + + +L GR+ ++ E+ R + G+ G
Sbjct: 60 EDDARKSERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKSG 103
|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 3 subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (111), Expect = 4e-07
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
+ ++ V NL +++E F+ FG I +++ +AF+ F
Sbjct: 7 DNATIRVTNLSEDTRETDLQELFRPFGSI-SRIYLAKDKTTGQSKGFAFISFHRREDAAR 65
Query: 1090 AIQA-SPIQLAGRQVYIEERRPNT 1112
AI S + +E +P+T
Sbjct: 66 AIAGVSGFGYDHLILNVEWAKPST 89
|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (111), Expect = 4e-07
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
D+G+ +++YV NL VT I + F G K + Y FVEF +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKS---CKMITEHTSNDPYCFVEFYEHRD 60
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRP 1110
A+ A + ++ G++V +
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATT 85
|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein UBP1 species: Trypanosoma cruzi [TaxId: 5693]
Score = 48.0 bits (113), Expect = 5e-07
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+ ++++ V +P+TV ++ + F+ + V +R+ Y FV+F+ S
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERY-GPIESVKIVCDRETRQSRGYGFVKFQSGSS 96
Query: 1087 VQNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1126
Q AI + + +++ + G G G G
Sbjct: 97 AQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNG 137
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (111), Expect = 6e-07
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 1034 VYVRNL-PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
V++ NL V ++E F +G+I V +AFV++ + + A+
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIV---------GCSVHKGFAFVQYVNERNARAAVA 68
Query: 1093 A-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRG 1126
+AG+ + I + R G G
Sbjct: 69 GEDGRMIAGQVLDINLAAEP-----KVNRSGPSSG 98
|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Non-POU domain-containing octamer-binding protein, NonO species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.7 bits (108), Expect = 9e-07
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V NLP +T E+ + F+ +G+ + + F+ E + + A
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-------GFGFIRLETRTLAEIAKVE 63
Query: 1094 -SPIQLAGRQVYIEERRPNTGST 1115
+ L G+Q+ + + T
Sbjct: 64 LDNMPLRGKQLRVRFACHSASLT 86
|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: APOBEC1 stimulating protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (107), Expect = 1e-06
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
VK +YVRNL + + IE+EF N + V YAFV F +
Sbjct: 7 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR-------DYAFVHFSNREDAVE 59
Query: 1090 AIQA-SPIQLAGRQVYIEERRP 1110
A++A + L G + + +P
Sbjct: 60 AMKALNGKVLDGSPIEVTLAKP 81
|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (106), Expect = 1e-06
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+V V+NLP + ++ + F++ G I V +A +EF G AI
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA---DSLKKNFRFARIEFARYDGALAAIT 58
Query: 1093 ASPIQLAGRQVYIEE 1107
+ + ++ +
Sbjct: 59 KTHKVVGQNEIIVSH 73
|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
++ + +SVY++ P+ T +I+E ++ G++ + K FV F+ I
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA--FKGSIFVVFDSIES 59
Query: 1087 VQNAIQASPIQLAGRQVYIE 1106
+ ++ + + I
Sbjct: 60 AKKFVETPGQKYKETDLLIL 79
|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (107), Expect = 2e-06
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
+VY + S +T + + F FG+I + Y+FV F +AI
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIM-------EIRVFPEKGYSFVRFSTHESAAHAIV 72
Query: 1093 A-SPIQLAGRQVYIEERRPNTGST 1115
+ + + G V + + T
Sbjct: 73 SVNGTTIEGHVVKCYWGKESPDMT 96
|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 3e-06
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
V +++++NL ++ + + F FG I V Y FV FE + A
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG---SKGYGFVHFETQEAAERA 64
Query: 1091 IQA-SPIQLAGRQVYIEERRP 1110
I+ + + L R+V++ +
Sbjct: 65 IEKMNGMLLNDRKVFVGRFKS 85
|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: IGF-II mRNA-binding protein 2 isoform A species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (103), Expect = 3e-06
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+Y+ NL VTA ++ + F + G + YAFV++ D + AI+
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPL-AGQVLLKS------GYAFVDYPDQNWAIRAIET 56
Query: 1094 --SPIQLAGRQVYIEERRP 1110
++L G+ + ++
Sbjct: 57 LSGKVELHGKIMEVDYSVS 75
|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 4e-06
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
+ K ++V N+P ++ + F FG+I + + FV FE+ +
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD---VEIIFNERGSKGFGFVTFENSAD 63
Query: 1087 VQNAIQA-SPIQLAGRQVYIE--ERRPNT 1112
A + + GR++ + R T
Sbjct: 64 ADRAREKLHGTVVEGRKIEVNNATARVMT 92
|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 4B species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 5e-06
Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++ NLP VT I+E F+ + + + + EFED+ + +A+
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPE-RLKGFGYAEFEDLDSLLSALSL 76
Query: 1094 SPIQLAGRQVYIE--ERRPNTGSTSRGG 1119
+ L +++ ++ ++ + S G
Sbjct: 77 NEESLGNKRIRVDVADQAQDKDSGPSSG 104
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (103), Expect = 5e-06
Identities = 12/87 (13%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++Y+ NL + E+++ + + + + AFV F+++S NA+
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 1092 QA-SPIQLAGRQVYIEERRPNTGSTSR 1117
++ + + I+ + ++ ++
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTDSDIIAK 90
|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 28 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.6 bits (102), Expect = 6e-06
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
D E K+V++RNL + E Q F V + AF +F
Sbjct: 4 DVTEGKTVFIRNLSFDSEEEALGEVLQQF-GDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 1087 VQNAIQASPIQLAGRQVYIEERR 1109
Q + A+ ++ G + ++ R+
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQ 85
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (101), Expect = 7e-06
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ LP+ + +++E +FG + V++ + YAF E+ DI+ AI
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 1094 -SPIQLAGRQVYIEERRPN 1111
+ +QL +++ ++
Sbjct: 63 LNGMQLGDKKLLVQRASVG 81
|
| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 1e-05
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1092
V++R LP T +I F ++ + + A VEF A+
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRV---TGEADVEFATHEDAVAAMA 73
Query: 1093 ASPIQLAGRQ--VYIEERRPNTGSTSRGG 1119
+ R +++ +GS G
Sbjct: 74 KDKANMQHRYVELFLNSTAGTSGSGPSSG 102
|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Score = 42.6 bits (99), Expect = 2e-05
Identities = 15/101 (14%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 1010 SHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK 1069
SHM E G + ++++ NL + E++ V + +
Sbjct: 2 SHMVE----------GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL--AVVDVR 49
Query: 1070 DVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1110
+ +V+FE ++ A++ + +++ G ++ +E+ +
Sbjct: 50 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90
|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cleavage stimulation factor, 64 kda subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1087
+ ++SV+V N+P T ++++ F V +R+ Y F E++D
Sbjct: 5 DRSLRSVFVGNIPYEATEEQLKDIFSEV-GPVVSFRLVYDRETGKPKGYGFCEYQDQETA 63
Query: 1088 QNAIQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGS 1127
+A++ + + +GR + ++ ++ + G G+
Sbjct: 64 LSAMRNLNGREFSGRALRVDNAASE---KNKEELKSLGTGA 101
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 42.4 bits (99), Expect = 2e-05
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
E ++V ++ EI+E+F ++G IK +R+ YA VE+E
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNI-HLNLDRRTGFSKGYALVEYETHKQALA 64
Query: 1090 AIQA-SPIQLAGRQVYIE 1106
A +A + ++ G+ + ++
Sbjct: 65 AKEALNGAEIMGQTIQVD 82
|
| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleoporin 35 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (97), Expect = 2e-05
Identities = 8/68 (11%), Positives = 17/68 (25%), Gaps = 8/68 (11%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
V V P + I +F +G I + + ++ + A+
Sbjct: 7 VTVFGFPQASAS-YILLQFAQYGNIL----KHVMSNTG---NWMHIRYQSKLQARKALSK 58
Query: 1094 SPIQLAGR 1101
Sbjct: 59 DGRIFGES 66
|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 3e-05
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 1032 KSVYVRNL-PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1090
+ V NL P VT + F +G ++ + + A V+ D + Q A
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK------ENALVQMADGNQAQLA 56
Query: 1091 IQA-SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRG 1141
+ + +L G+ + I + R G+ +G ++P RF G
Sbjct: 57 MSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG 108
|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (96), Expect = 3e-05
Identities = 8/78 (10%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ N P + T I + Q+ + + + + + +A+++ + ++
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALS-IRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 1094 -SPIQLAGRQVYIEERRP 1110
+ +++ G + + P
Sbjct: 63 LNGLKIEGYTLVTKVSNP 80
|
| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.2 bits (96), Expect = 4e-05
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+ V+N+P TV+ EI + F + I V ++ + + A V FE A+
Sbjct: 12 IKVQNMPFTVSIDEILDFFYGYQVIPG-SVCLKYNEKGMPTGEAMVAFESRDEATAAVID 70
Query: 1094 -SPIQLAGRQVYIE 1106
+ + R+V +
Sbjct: 71 LNDRPIGSRKVKLV 84
|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cold-inducible RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 6e-05
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
++V L +E+ F + + V V++R+ + FV FE+I ++A+ A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKY-GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTS 1116
+ + GRQ+ +++ ++ + S
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRS 90
|
| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein L-like species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.3 bits (96), Expect = 6e-05
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
V+VR L +V ++ E + FG I + A VEFE+I + +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-------RQALVEFENIDSAKECV 68
Query: 1092 QA---SPIQLAGRQVYI------EERRPNTGSTSRG 1118
P+ +AG+Q + RP S G
Sbjct: 69 TFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
|
| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Splicing factor U2AF subunits domain: U2AF35 (35 KDa subunit) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
V V ++ E + +G ++ + N D V +V+F +
Sbjct: 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVE-EMNVCDNLGD-HLVGNVYVKFRREEDAEK 83
Query: 1090 AIQA-SPIQLAGRQVYIE 1106
A+ + G+ ++ E
Sbjct: 84 AVIDLNNRWFNGQPIHAE 101
|
| >d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 8/82 (9%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++++ N+P +V+ +++ F + G + F + + A ++ + A+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR-----KMALIQMGSVEEAVQAL 65
Query: 1092 QASPIQ--LAGRQVYIEERRPN 1111
+ + +
Sbjct: 66 IDLHNHDLGENHHLRVSFSKST 87
|
| >d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
VY++ LP + + F+ ++ FVEF + + + A+
Sbjct: 21 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA-TGEGFVEFRNEADYKAALCR 79
Query: 1094 SPIQLAGRQVYIE 1106
+ R + +
Sbjct: 80 HKQYMGNRFIQVH 92
|
| >d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribosomal proteins L15p and L18e superfamily: Ribosomal proteins L15p and L18e family: Ribosomal proteins L15p and L18e domain: Ribosomal protein L15 (L15p) species: Thermus thermophilus [TaxId: 274]
Score = 40.4 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 1109 RPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDGGDYNRSRGNGFYQ 1163
RPN G+ R R GRG GS G+ RG ++ GG + R G
Sbjct: 3 RPNPGANKRRKRVGRGPGSG-----HGKTATRGHKGQKSRSGGLKDPRRFEGGRS 52
|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CUG triplet repeat RNA-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 17/82 (20%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+++ +LP ++ + F FG + VF+ + + + C+ FV +++ Q AIQ+
Sbjct: 21 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-LSKCFGFVSYDNPVSAQAAIQS 79
Query: 1094 -SPIQLAGRQVYIEERRPNTGS 1114
+ Q+ +++ ++ +R S
Sbjct: 80 MNGFQIGMKRLKVQLKRSKNDS 101
|
| >d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 3e-04
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
V V LP + + ++ ++ R D + +D VEF + A++
Sbjct: 3 VVVSGLPPSGS----WQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRK 54
Query: 1094 -SPIQLAGRQVYIEERRPNTGSTSRGGRRGRGR 1125
+ + R R GR R
Sbjct: 55 LDNTKFRSHEGETAYIRVKV-DGPRSPSYGRSR 86
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 4e-04
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1089
+++ +++ L T + F+ +G + D V +R+ + FV + + V
Sbjct: 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 1090 AIQASPIQ 1097
A+ A P +
Sbjct: 64 AMNARPHK 71
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
K ++V + + + F+ +G+I + +R +AFV F+D V +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKI-EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 156
Query: 1092 QASPIQLAGRQVYIEERRP 1110
+ G + +
Sbjct: 157 IQKYHTVNGHNCEVRKALS 175
|
| >d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 4e-04
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 1086
D V +R LP + EI + F I P+G+ + AFV+F
Sbjct: 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLE-IVPNGMTLPVDFQGRSTGEAFVQFASQEI 69
Query: 1087 VQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRG 1122
+ A++ ++ R + I + TS G G
Sbjct: 70 AEKALKKHKERIGHRYIEIFKSSRAEVRTS-GPSSG 104
|
| >d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribosomal proteins L15p and L18e superfamily: Ribosomal proteins L15p and L18e family: Ribosomal proteins L15p and L18e domain: Ribosomal protein L15 (L15p) species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (92), Expect = 5e-04
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 1109 RPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDGGDYNRSRGNGFYQR 1164
P GS G R GRG GS G+ GGRG +G G R G
Sbjct: 4 SPAEGSKKAGKRLGRGIGSG-----LGKTGGRG-HKGQKSRSGGGVRRGFEGGQMP 53
|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 41, RBM41 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 8e-04
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
K +Y++NL VT ++ F F AF+ F + A+
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEK-KGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 77
Query: 1092 QA-SPIQLAGRQVYIEERRP 1110
+ +L G+ + IE +
Sbjct: 78 HLVNGYKLYGKILVIEFGKN 97
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 39.6 bits (92), Expect = 0.001
Identities = 14/132 (10%), Positives = 29/132 (21%), Gaps = 5/132 (3%)
Query: 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 415
W N L +G + ++L + A ++ + G + A L +
Sbjct: 2 QWKNAL----SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQL-MQS 56
Query: 416 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 475
+ L + N+ + E
Sbjct: 57 IKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYE 116
Query: 476 DAFSLYEQAIAI 487
L Q +
Sbjct: 117 QVSELALQIEEL 128
|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (82), Expect = 0.002
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
+Y+R L T ++ + Q + + ++ Y FV+F+ S Q A+ A
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 59
|
| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 9 (SFRS9) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.7 bits (84), Expect = 0.002
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093
V V LP + + ++ ++ R D + +KD VE+ ++ A++
Sbjct: 18 VLVSGLPPSGS----WQDLKDHMREAGDVCYADVQKD----GMGMVEYLRKEDMEYALRK 69
Query: 1094 -SPIQLAGRQV---YIEERRPNTGSTSRG 1118
+ + YI + S G
Sbjct: 70 LDDTKFRSHEGETSYIRVYPERSSGPSSG 98
|
| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein KIAA1579 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.002
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
+ V+NLP E+ + +++ + AFV + QNAI
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDL--------KYCYVDRNKRTAFVTLLNGEQAQNAI 57
Query: 1092 QA-SPIQLAGRQVYIEERRPNTGSTS 1116
Q G+ + ++ + + S
Sbjct: 58 QMFHQYSFRGKDLIVQLQPTDALLCS 83
|
| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Putative RNA-binding protein 15B, Rbm15b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.2 bits (83), Expect = 0.003
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091
++V L + + EF FG I+ + +A++++E + Q A
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-------SFAYIQYESLDAAQAAC 70
Query: 1092 QA---SPIQLAGRQVYIEERRPNTGS 1114
P+ R++ ++ + S
Sbjct: 71 AKMRGFPLGGPDRRLRVDFAKSGPSS 96
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.004
Identities = 18/134 (13%), Positives = 42/134 (31%)
Query: 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 415
L + D F +V +L+ + + ++ L + + S +
Sbjct: 138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 197
Query: 416 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 475
+ V+ + NG+ A E PG + + LG
Sbjct: 198 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257
Query: 476 DAFSLYEQAIAIEK 489
+A + +A+ +++
Sbjct: 258 EAVEHFLEALNMQR 271
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1167 | |||
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1gy6a_ | 125 | Nuclear transport factor-2 (NTF2) {Rat (Rattus nor | 99.95 | |
| d1gy7a_ | 121 | Nuclear transport factor-2 (NTF2) {Baker's yeast ( | 99.94 | |
| d1jkga_ | 139 | NTF2-related export protein 1 (p15) {Human (Homo s | 99.93 | |
| d1zo2a1 | 117 | Nuclear transport factor-2 (NTF2) {Cryptosporidium | 99.93 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.88 | |
| d2qiya1 | 139 | UBP3-associated protein BRE5 {Baker's yeast (Sacch | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.81 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.8 | |
| d1u6fa1 | 139 | RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId | 99.69 | |
| d2cqda1 | 103 | RNA-binding region containing protein 1 {Human (Ho | 99.67 | |
| d1whwa_ | 99 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.66 | |
| d1l3ka1 | 84 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.66 | |
| d2cpza1 | 102 | CUG triplet repeat RNA-binding protein 1 {Human (H | 99.65 | |
| d1rk8a_ | 88 | RNA-binding protein 8 {Fruit fly (Drosophila melan | 99.65 | |
| d1b7fa1 | 82 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.64 | |
| d2cqba1 | 89 | Peptidyl-prolyl cis-trans isomerase E, N-terminal | 99.64 | |
| d1h2vz_ | 93 | CBP20, 20KDa nuclear cap-binding protein {Human (H | 99.64 | |
| d1x4ba1 | 103 | Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu | 99.64 | |
| d1uawa_ | 77 | Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | 99.64 | |
| d1hd0a_ | 75 | Heterogeneous nuclear ribonucleoprotein d0 {Human | 99.64 | |
| d1x5ua1 | 93 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.64 | |
| d1fxla1 | 82 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.63 | |
| d2ghpa3 | 86 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.63 | |
| d2cqga1 | 90 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.63 | |
| d2cq0a1 | 90 | Eukaryotic translation initiation factor 3 subunit | 99.63 | |
| d1cvja1 | 80 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.62 | |
| d1x0fa1 | 75 | Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s | 99.62 | |
| d2u2fa_ | 85 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.62 | |
| d1x5ta1 | 83 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.62 | |
| d2cq4a1 | 101 | RNA binding protein 23 {Human (Homo sapiens) [TaxI | 99.62 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.61 | |
| d1l3ka2 | 79 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.61 | |
| d1x5sa1 | 90 | Cold-inducible RNA-binding protein {Human (Homo sa | 99.6 | |
| d2cqca1 | 83 | Arginine/serine-rich splicing factor 10 {Human (Ho | 99.59 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.59 | |
| d2cpha1 | 94 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.59 | |
| d1wi8a_ | 104 | Eukaryotic translation initiation factor 4B {Human | 99.59 | |
| d1fjeb1 | 91 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.59 | |
| d1b7fa2 | 85 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.58 | |
| d2cpea1 | 101 | RNA-binding protein EWS {Human (Homo sapiens) [Tax | 99.58 | |
| d1fxla2 | 85 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.58 | |
| d2cqia1 | 90 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.58 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.58 | |
| d2ghpa1 | 81 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.58 | |
| d2cq3a1 | 93 | RNA-binding protein 9 {Human (Homo sapiens) [TaxId | 99.57 | |
| d1p1ta_ | 104 | Cleavage stimulation factor, 64 kda subunit {Human | 99.57 | |
| d2msta_ | 75 | Neural RNA-binding protein Musashi-1 {Mouse (Mus m | 99.57 | |
| d2cpfa1 | 85 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.57 | |
| d1x4ha1 | 98 | RNA-binding protein 28 {Mouse (Mus musculus) [TaxI | 99.56 | |
| d1no8a_ | 78 | Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 | 99.56 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.55 | |
| d1zh5a2 | 85 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.55 | |
| d1cvja2 | 89 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.53 | |
| d1wg5a_ | 104 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.53 | |
| d1wf0a_ | 88 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.52 | |
| d1x4aa1 | 95 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.51 | |
| d1wf2a_ | 98 | Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu | 99.5 | |
| d1fjca_ | 96 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.5 | |
| d1weza_ | 102 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.5 | |
| d2cpxa1 | 102 | RNA-binding protein 41, RBM41 {Human (Homo sapiens | 99.5 | |
| d2cpya1 | 103 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.49 | |
| d2f9da1 | 114 | Pre-mRNA branch site protein p14 {Human (Homo sapi | 99.49 | |
| d2ghpa2 | 75 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.48 | |
| d2disa1 | 96 | Hypothetical protein FLJ20273 {Human (Homo sapiens | 99.48 | |
| d1x4ga1 | 96 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.48 | |
| d2cqha1 | 80 | IGF-II mRNA-binding protein 2 isoform A {Human (Ho | 99.46 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.46 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.46 | |
| d2cpda1 | 86 | APOBEC1 stimulating protein {Human (Homo sapiens) | 99.46 | |
| d1x5oa1 | 101 | RNA-binding motif, single-stranded-interacting pro | 99.46 | |
| d2bz2a1 | 79 | Negative elongation factor E, NELF-E {Human (Homo | 99.46 | |
| d2cqpa1 | 86 | RNA-binding protein 12 {Mouse (Mus musculus) [TaxI | 99.46 | |
| d1wg4a_ | 98 | Splicing factor, arginine/serine-rich 9 (SFRS9) {M | 99.45 | |
| d2adca2 | 88 | Polypyrimidine tract-binding protein {Human (Homo | 99.44 | |
| d1wg1a_ | 88 | Probable RNA-binding protein KIAA1579 {Human (Homo | 99.43 | |
| d2adca1 | 109 | Polypyrimidine tract-binding protein {Human (Homo | 99.43 | |
| d1x4ea1 | 72 | RNA-binding motif, single-stranded-interacting pro | 99.42 | |
| d2cpia1 | 89 | E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc | 99.42 | |
| d1nu4a_ | 91 | Splicesomal U1A protein {Human (Homo sapiens) [Tax | 99.42 | |
| d2b0ga1 | 83 | Splicesomal U1A protein {Drosophila melanogaster [ | 99.42 | |
| d1whxa_ | 111 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.42 | |
| d2cpja1 | 86 | Non-POU domain-containing octamer-binding protein, | 99.41 | |
| d1wela1 | 112 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.41 | |
| d3begb1 | 87 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.4 | |
| d1u2fa_ | 90 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.38 | |
| d1wexa_ | 104 | Heterogeneous nuclear ribonucleoprotein L-like {Mo | 99.38 | |
| d1wi6a1 | 75 | Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M | 99.37 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.37 | |
| d2cq1a1 | 88 | Polypyrimidine tract-binding protein 2, PTBP2 {Hum | 99.36 | |
| d1whya_ | 97 | Putative RNA-binding protein 15B, Rbm15b {Mouse (M | 99.35 | |
| d2adba1 | 108 | Polypyrimidine tract-binding protein {Human (Homo | 99.34 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d1x4fa1 | 99 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.3 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.26 | |
| d1x4da1 | 89 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.25 | |
| d1weya_ | 104 | Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 | 99.2 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.13 | |
| d1wwha1 | 81 | Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090 | 99.08 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | U2 | 99.07 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.04 | |
| d1of5b_ | 165 | mRNA transport regulator MTR2 {Baker's yeast (Sacc | 99.02 | |
| d1owxa_ | 113 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.0 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.98 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.98 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.97 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.93 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.92 | |
| d2cq2a1 | 101 | Alkylation repair AlkB homolog 8, ALKBH8 {Human (H | 98.9 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.9 | |
| d1q40b_ | 205 | NTF2-like domain of mRNA export factor MEX67 {Yeas | 98.9 | |
| d2dita1 | 99 | HIV Tat-specific factor 1 {Human (Homo sapiens) [T | 98.89 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.86 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.84 | |
| d1of5a_ | 221 | NTF2-like domain of mRNA export factor MEX67 {Bake | 98.82 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.8 | |
| d1jkgb_ | 186 | NTF2-like domain of Tip associating protein, TAP { | 98.79 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.74 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.68 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.63 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.62 | |
| d1o0pa_ | 104 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 98.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.56 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.54 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.54 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.44 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.24 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.22 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.22 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.06 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.96 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.78 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.78 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.73 | |
| d1q42a_ | 174 | mRNA transport regulator MTR2 {Yeast (Candida albi | 96.81 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.59 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.44 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.93 | |
| d1ufwa_ | 95 | Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606] | 94.86 | |
| d1uw4a_ | 91 | RNA processing protein UPF3x, RRM domain {Human (H | 93.85 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 91.84 | |
| d3d9ra1 | 132 | Uncharacterized protein ECA1476 {Pectobacterium at | 90.81 | |
| d2dgxa1 | 73 | Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960 | 90.39 | |
| d2gxfa1 | 128 | Hypothetical protein YybH {Bacillus subtilis [TaxI | 89.63 | |
| d3cu3a1 | 162 | Uncharacterized protein NpunR1993 {Nostoc punctifo | 88.53 | |
| d2owpa1 | 128 | Hypothetical protein BxeB1374 {Burkholderia xenovo | 87.57 | |
| d3b7ca1 | 121 | Uncharacterized protein SO0125 {Shewanella oneiden | 87.47 | |
| d2rcda1 | 127 | Uncharacterized protein ECA3500 {Pectobacterium at | 85.52 | |
| d1whva_ | 100 | Poly(A)-specific ribonuclease PARN {Mouse (Mus mus | 84.52 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 84.32 | |
| d1m98a2 | 142 | Orange carotenoid protein, C-terminal domain {Cyan | 82.56 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=8.7e-30 Score=286.82 Aligned_cols=273 Identities=20% Similarity=0.260 Sum_probs=238.5
Q ss_pred CCChhhHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------CHH
Q 001064 348 PLSVTELENWHNYLDFIERDG--------DFNKVVKLYERCLIACANYPEYWIRYVLCMEASG--------------SMD 405 (1167)
Q Consensus 348 pld~~~~~~W~~y~~~~e~~g--------~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g--------------~~e 405 (1167)
|.+..++++|+.|++|++..+ ..++++.+|+|||..+|+++++|+.|+.++...+ ..+
T Consensus 2 ~~e~~~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (308)
T d2onda1 2 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchH
Confidence 456678899999999987643 3568999999999999999999999999986543 357
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-LEAIIKHANMERRLGNLEDAFSLYEQA 484 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-~~~~~~~a~~e~r~g~~e~A~~~~~kA 484 (1167)
+|+.+|+||+..++|++..+|+.++.+++..|++++|+.+|+++ +...|.+ ..+|+.++.++.+.|++++|+.+|+++
T Consensus 82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~-l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 89999999999877999999999999999999999999999998 6778765 568999999999999999999999999
Q ss_pred HHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 485 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 485 l~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
+...|.. +.+|..++.+++...|+.+.|+.+|+++++.+|++..+|..|+.|+...++ ++.+|.+|++++.
T Consensus 161 l~~~~~~------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~---~~~aR~~fe~ai~ 231 (308)
T d2onda1 161 REDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLT 231 (308)
T ss_dssp HTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred HHhCCCc------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH
Confidence 9988643 568888998888767999999999999999999999999999999999887 6779999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCC
Q 001064 565 SNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAP 642 (1167)
Q Consensus 565 ~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~ 642 (1167)
..+.++ ++...||..|+.||..|||++++.++++|+.++++... +. .+.....+||++++++||+.
T Consensus 232 ~~~~~~-----~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~-----~~--~~~~~~~~ry~~~d~~~~~~ 297 (308)
T d2onda1 232 SGSLPP-----EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY-----EG--KETALLVDRYKFMDLYPCSA 297 (308)
T ss_dssp SSSSCG-----GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT-----SS--CHHHHHHTTTCBTTBCSSCH
T ss_pred hCCCCh-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc-----cc--chHHHHHHHHHhcccCcCCH
Confidence 876443 45678999999999999999999999999999998641 11 13445679999999999774
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.2e-27 Score=270.07 Aligned_cols=375 Identities=14% Similarity=0.159 Sum_probs=305.7
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
|++++|+..|+++++.+|.+.++|..|+..+..+ +++++|+..|+++++.+|++..+|..++.++.+.|++++|+..|
T Consensus 13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~ 90 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccc
Confidence 7888888888888888888888888888888774 78888888888888888888888888888888888888888888
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 236 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~ 236 (1167)
.+++...|.....+........ .......+...+......... ....+...............+...+.+.+...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T d1w3ba_ 91 RHALRLKPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccc---cccccccccccccccchhhhhHHHHHHhhccCc
Confidence 8888888888888777777666 445555555555555553332 234444445544555555666555555555443
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHH
Q 001064 237 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 316 (1167)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~ 316 (1167)
.+...++
T Consensus 167 ~~~~~~~------------------------------------------------------------------------- 173 (388)
T d1w3ba_ 167 NFAVAWS------------------------------------------------------------------------- 173 (388)
T ss_dssp TCHHHHH-------------------------------------------------------------------------
T ss_pred chhHHHH-------------------------------------------------------------------------
Confidence 3322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 396 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~ 396 (1167)
.+...+...+.+++|+..++++++ ++|.....|..++..+...|++++|+..|++++...+.....|..++.
T Consensus 174 ~l~~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 245 (388)
T d1w3ba_ 174 NLGCVFNAQGEIWLAIHHFEKAVT--------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhcccccccCcHHHHHHHHHHHHH--------hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHH
Confidence 112344555667778888899888 778889999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 476 (1167)
++...|++++|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ....|.+..++..++.++...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh-hccCCccchhhhHHHHHHHHCCCHHH
Confidence 9999999999999999999988 899999999999999999999999999998 77899999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCC
Q 001064 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 547 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~ 547 (1167)
|+.+|+++++..|+ .+.+|..+|.++.. .|++++|+..|+++|+++|++...|..++.....++
T Consensus 324 A~~~~~~al~~~p~------~~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 324 AVRLYRKALEVFPE------FAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTTSCTT------CHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999998864 36789999999776 999999999999999999999998887776655443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8e-26 Score=259.24 Aligned_cols=385 Identities=12% Similarity=0.061 Sum_probs=307.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 181 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~ 181 (1167)
.|+..+.+ .|++++|++.|+++++.+|++..+|..++.++.+.|++++|+.+|+++|+.+|.+.+.|..++.++. ..
T Consensus 4 ~la~~~~~--~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~-~~ 80 (388)
T d1w3ba_ 4 ELAHREYQ--AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ER 80 (388)
T ss_dssp THHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhh-hh
Confidence 45665555 4899999999999999999999999999999999999999999999999999999999999999998 68
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccH
Q 001064 182 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 261 (1167)
Q Consensus 182 ~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1167)
|++++|+..|++++...+.+ ...+...............+...+..................
T Consensus 81 g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 142 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDF---IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG--------------- 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH---------------
T ss_pred cccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccc---------------
Confidence 99999999999999965543 444444444333333333333333222222111111111000
Q ss_pred HHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001064 262 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 341 (1167)
Q Consensus 262 ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r 341 (1167)
...........+...+.+.+.
T Consensus 143 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~- 163 (388)
T d1w3ba_ 143 ----------------------------------------------------------NLLKALGRLEEAKACYLKAIE- 163 (388)
T ss_dssp ----------------------------------------------------------HHHHTTSCHHHHHHHHHHHHH-
T ss_pred ----------------------------------------------------------ccccccchhhhhHHHHHHhhc-
Confidence 011111222223333444444
Q ss_pred CCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc
Q 001064 342 PYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 421 (1167)
Q Consensus 342 ~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~ 421 (1167)
.+|.....|..++.++...+++++|+..+++++..+|.+.++|..++.++...|++++|...|++++... +.
T Consensus 164 -------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 235 (388)
T d1w3ba_ 164 -------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp -------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred -------cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence 4566678899999999999999999999999999999999999999999999999999999999999987 78
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001064 422 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 501 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~ 501 (1167)
....+...+.++.+.|++++|+..|+++ ++++|++..+|..++.++...|++++|+.+|++++...|. .+.++
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~ 308 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSL 308 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhh
Confidence 8999999999999999999999999998 7899999999999999999999999999999999998864 25678
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 001064 502 AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREEL 581 (1167)
Q Consensus 502 ~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i 581 (1167)
..++.++.. .|++++|.++|+++++.+|++..+|..++.+....+. .+.+..+|++++...|++. ++
T Consensus 309 ~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~P~~~---------~a 375 (388)
T d1w3ba_ 309 NNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFA---------DA 375 (388)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCH---------HH
T ss_pred hHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH---------HH
Confidence 888888665 9999999999999999999999999988888888776 5668999999999887664 46
Q ss_pred HHHHHHHHHhhCC
Q 001064 582 SCVFLEFLGLFGD 594 (1167)
Q Consensus 582 ~~~~l~fe~~~Gd 594 (1167)
|......+...||
T Consensus 376 ~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 376 YSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 6666666666655
|
| >d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=4e-28 Score=230.97 Aligned_cols=118 Identities=25% Similarity=0.372 Sum_probs=106.4
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcce--eEeeeeccccCCCceE
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGVL 795 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~--~i~~~d~q~~~~~~i~ 795 (1167)
+++||++||++||++|+++|+.|++||.++|.| +|+|+.+. |..+|.++|++||+++| .|.++|||++.+++|+
T Consensus 5 ~e~ig~~Fv~~YY~~l~~~r~~L~~~Y~~~S~l-~~~g~~~~---G~~~I~~~l~~lp~~~~~~~i~~~D~Q~~~~~~il 80 (125)
T d1gy6a_ 5 WEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCL-TWEGQQFQ---GKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII 80 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEE-EETTEEEE---SHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHcCCCcEE-EECCcccc---CHHHHHHHHHcCCCcccEEEEeEEEEEEcCCCCEE
Confidence 367999999999999999999999999998655 57887655 45667899999999875 6999999999999999
Q ss_pred EEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEeccCCC
Q 001064 796 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEP 840 (1167)
Q Consensus 796 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~~~ 840 (1167)
|+|+|.|+.++. ++++|+|+|+|++++++|||.||||||+.+++
T Consensus 81 i~V~G~~~~~~~-~~~~F~qtF~L~~~~~~y~I~NDiFR~v~~~~ 124 (125)
T d1gy6a_ 81 SMVVGQLKADED-PIMGFHQMFLLKNINDAWVCTNDMFRLALHNF 124 (125)
T ss_dssp EEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred EEEEEEEEECCC-CCcceEEEEEEeccCCEEEEEeeEEEEEeccC
Confidence 999999999886 78999999999999999999999999998765
|
| >d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.9e-27 Score=225.38 Aligned_cols=115 Identities=26% Similarity=0.471 Sum_probs=102.4
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcce--eEeeeecccc-CCCce
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGS-WNGGV 794 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~--~i~~~d~q~~-~~~~i 794 (1167)
+++||+.||++||++|+++|+.|++||.++|.| +|+|+.+. |.++|.++|.+||+++| +|.++||||+ .+|+|
T Consensus 2 ~~~Ia~~Fv~~YY~~l~~~r~~L~~~Y~~~s~l-~~~g~~~~---G~~~I~~~l~~lp~~~~~~~i~~~D~Qp~~~~~~i 77 (121)
T d1gy7a_ 2 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESML-TFETSQLQ---GAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDV 77 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEE-EETTEEEE---SHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCE
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHcCCCcEE-EECCeEec---CHHHHHHHHHhCCCcccEEEEeeEeeEEccCCCeE
Confidence 468999999999999999999999999997655 58987665 55678999999998765 7999999995 57789
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEec
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 836 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~ 836 (1167)
||+|+|.++.+++.++++|+|+|+|++++++|||+|||||++
T Consensus 78 li~V~G~~~~~~~~~~~~F~qtF~L~~~~~~y~I~nD~FRl~ 119 (121)
T d1gy7a_ 78 LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLN 119 (121)
T ss_dssp EEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCCcceeEEEEEEEeeCCEEEEEEEEEEEe
Confidence 999999999987667899999999999999999999999986
|
| >d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-related export protein 1 (p15) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.9e-27 Score=225.39 Aligned_cols=116 Identities=22% Similarity=0.428 Sum_probs=102.9
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCC------
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWN------ 791 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~------ 791 (1167)
..+||..||++||++|+++|+.|++||.++|+|+ |+|+.+. |.++|.++|.+||+++++|.++|||++.+
T Consensus 12 a~~~a~~FV~~YY~~l~~~r~~L~~fY~~~S~l~-~~g~~~~---G~~~I~~~l~~lp~~~~~i~~~D~q~~~~~~~~~~ 87 (139)
T d1jkga_ 12 ACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLV-WNGNAVS---GQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQ 87 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-ETTEEEE---SHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHhCCCceEE-ECCeecc---CHHHHHHHHHhCCCceeEEEEEEEEEcCcccccCC
Confidence 3569999999999999999999999999987665 7987665 45678999999999999999999999764
Q ss_pred CceEEEEEEEEEecCccccceeEEEEEEeeeC----CeEEEEcceEEeccC
Q 001064 792 GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE----KGYFVLNDIFHFLDE 838 (1167)
Q Consensus 792 ~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~----~~y~v~nd~fr~~~~ 838 (1167)
+||||+|+|.|+.++. ++++|+|+|+|++++ ++|||.||||||+|-
T Consensus 88 ~~ilI~V~G~v~~~~~-~~r~F~QtF~L~~~~~~~~~~y~I~nD~fR~vd~ 137 (139)
T d1jkga_ 88 TTVLVVICGSVKFEGN-KQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 137 (139)
T ss_dssp CEEEEEEEEEEEETTS-CCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred CeEEEEEEEEEEcCCC-CcceeEEEEEEEecCCCCCCcEEEEeeEEEEEec
Confidence 6899999999999986 789999999999985 469999999999983
|
| >d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: Nuclear transport factor-2 (NTF2) species: Cryptosporidium parvum [TaxId: 5807]
Probab=99.93 E-value=9.6e-27 Score=219.48 Aligned_cols=112 Identities=30% Similarity=0.521 Sum_probs=100.1
Q ss_pred chhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcce--eEeeeeccccCCCceEE
Q 001064 719 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGVLV 796 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~--~i~~~d~q~~~~~~i~v 796 (1167)
++||+.||++||++|+++|+.|++||.++|. ++|+|..+. |..+|.++|.+||++.+ .|+++||||+.+|||||
T Consensus 2 e~vg~~Fv~~YY~~~~~~r~~l~~~Y~~~s~-l~~~g~~~~---G~~~I~~~l~~l~~~~~~~~i~~~D~Qp~~~~~ili 77 (117)
T d1zo2a1 2 DQIGKQFVQHYYQTFQTNRPALGGLYGPQSM-LTWEDTQFQ---GQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGSIV 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGGGEEEEEE-EEETTEEEE---SHHHHHHHHHHHCCSCEEEEEEEEEEEECTBSSEEE
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHhhccCCcE-EEECCCccc---CHHHHHHHHHhCCCccceEEEeeEEEEEcCCCCEEE
Confidence 4799999999999999999999999999755 557887655 45568889999998854 69999999999999999
Q ss_pred EEEEEEEecCccccceeEEEEEEeeeC-CeEEEEcceEEe
Q 001064 797 MVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHF 835 (1167)
Q Consensus 797 ~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nd~fr~ 835 (1167)
+|+|.|+.++. ++++|+|+|+|++++ ++|||.|||||+
T Consensus 78 ~V~G~~~~~~~-~~~~F~q~F~L~~~~~~~~~I~nD~FRl 116 (117)
T d1zo2a1 78 FVTGDVRIDDG-QPLKFSQVFNLMPSGNGGFMIFNDLFRL 116 (117)
T ss_dssp EEEEEEEETTC-CCEEEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred EEEEEEEeCCC-CcceeEEEEEEeEcCCCCEEEEeEEeec
Confidence 99999999886 789999999999986 579999999996
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1.5e-21 Score=218.76 Aligned_cols=242 Identities=15% Similarity=0.231 Sum_probs=194.1
Q ss_pred CHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh-------------cCCHHHHHHH
Q 001064 132 CYGYWKKYADHEARVG--------SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT-------------YGDPETIRRL 190 (1167)
Q Consensus 132 ~~~~W~~~a~~e~~~~--------~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~-------------~~~~~~Ar~~ 190 (1167)
..++|+.|+++|...+ ..++++.+|+|||..+|.++++|+.|++|+.+. .+..++++.+
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 86 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHH
Confidence 3578999999988653 357799999999999999999999999998631 1235788999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Q 001064 191 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVA 270 (1167)
Q Consensus 191 feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~ 270 (1167)
|+||++..+ +.+..+|..|+.++..++++++|+.+|+++|...+.+.
T Consensus 87 ~~ral~~~~--p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~------------------------------- 133 (308)
T d2onda1 87 YERAISTLL--KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP------------------------------- 133 (308)
T ss_dssp HHHHHTTTT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------------------------------
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh-------------------------------
Confidence 999997532 33678999999999999999999888888765433211
Q ss_pred hhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC
Q 001064 271 VAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 350 (1167)
Q Consensus 271 ~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld 350 (1167)
T Consensus 134 -------------------------------------------------------------------------------- 133 (308)
T d2onda1 134 -------------------------------------------------------------------------------- 133 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhccChHHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLFA 429 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~-~g~~e~A~~vl~rA~~~~~p~~~~l~~~~ 429 (1167)
..+|..|+.++.+.+++++++.+|++++..+|....+|+.++.+... .|+.+.|+.+|++++..+ |+++.+|+.+
T Consensus 134 ---~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y 209 (308)
T d2onda1 134 ---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAY 209 (308)
T ss_dssp ---HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 12477777777778888888888888888888888888888876544 578888888999998887 7788889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 430 ARFKEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 430 a~~~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
+.++...|+++.||.+|+++ +...|. ...+|..|+.||.+.|+.+.++.+++++.+..|..
T Consensus 210 ~~~~~~~g~~~~aR~~fe~a-i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 210 IDYLSHLNEDNNTRVLFERV-LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHH-HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHcCChHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 99988889999999999987 454543 34589999999999999999999999998888753
|
| >d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: UBP3-associated protein BRE5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=4.1e-23 Score=201.87 Aligned_cols=117 Identities=20% Similarity=0.356 Sum_probs=99.5
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcc------------cchhchHHHHHHHhcCCCc--c--eeE
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST------------ESASSMLDIHSLVISLNFT--A--IEI 781 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~------------~~~~~~~~i~~~~~~l~~~--~--~~i 781 (1167)
+++||+.||++||+.|+++|+.|++||+++|.++ |+|... ....|.++|++++.+||.. + +.|
T Consensus 3 ~e~ig~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~s-~~~~~~~~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~~~i 81 (139)
T d2qiya1 3 VQDICFAFLQNYYERMRTDPSKLAYFYASTAELT-HTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKL 81 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhcCCcEEE-EcCCCcccccccchhhhhhccccHHHHHHHHHhcCccccceEEee
Confidence 4689999999999999999999999999987665 566432 2346889999999999843 3 479
Q ss_pred eeeeccccC--CCceEEEEEEEEEecCccccceeEEEEEEeeeCC--eEEEEcceEEec
Q 001064 782 KTINSLGSW--NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEK--GYFVLNDIFHFL 836 (1167)
Q Consensus 782 ~~~d~q~~~--~~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~--~y~v~nd~fr~~ 836 (1167)
.++|+|++. +++|+|+|+|.++.++. +.|.|+|||+|+|+++ .|+|.||||||+
T Consensus 82 ~~~d~~~~~~~~~~i~v~V~G~~~~~~~-~~r~F~qtFvL~p~~~~~~~~I~nDifR~v 139 (139)
T d2qiya1 82 DTIDFQYTGHLHKSILIMATGEMFWTGT-PVYKFCQTFILLPSSNGSTFDITNDIIRFI 139 (139)
T ss_dssp EEEEEEEESGGGCEEEEEEEEEEEETTC-CCEEEEEEEEEEECC---CEEEEEEEEEEE
T ss_pred eeeeeeecccCCCEEEEEEeeEEecCCC-CccceEEEEEEEecCCCCEEEEEeeEEEeC
Confidence 999999854 78899999999999885 7899999999999874 599999999996
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.3e-18 Score=195.32 Aligned_cols=262 Identities=11% Similarity=-0.007 Sum_probs=195.7
Q ss_pred CCC-CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 93 NSS-DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 93 nP~-d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
||. +.+.++..|..+.+ .|++++|++.|+++|+.+|.+..+|..++.++...|++++|+..|++++...|.+.+.|.
T Consensus 14 n~~~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 91 (323)
T d1fcha_ 14 NPLRDHPQPFEEGLRRLQ--EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 91 (323)
T ss_dssp CTTTTCSSHHHHHHHHHH--TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccc
Confidence 443 55667788887776 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
.++..+. ..+++++|...|++++...+.... ++........ ..++...+
T Consensus 92 ~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~-------------------~~~~~~~~-------- 140 (323)
T d1fcha_ 92 ALAVSFT-NESLQRQACEILRDWLRYTPAYAH---LVTPAEEGAG-------------------GAGLGPSK-------- 140 (323)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHTSTTTGG---GCC------------------------------------------
T ss_pred ccccccc-ccccccccccchhhHHHhccchHH---HHHhhhhhhh-------------------hcccccch--------
Confidence 9998888 678999999999999885554311 1000000000 00000000
Q ss_pred cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 252 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK 331 (1167)
Q Consensus 252 ~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a 331 (1167)
+. ...+...+.+.++
T Consensus 141 -------------------------------------------------------------~~----~~~~~~~~~~~~a 155 (323)
T d1fcha_ 141 -------------------------------------------------------------RI----LGSLLSDSLFLEV 155 (323)
T ss_dssp -------------------------------------------------------------CT----THHHHHHHHHHHH
T ss_pred -------------------------------------------------------------hh----HHHHHHhhHHHHH
Confidence 00 0011233445556
Q ss_pred HHHHHhhhcCCCcccCCCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001064 332 IIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHN 409 (1167)
Q Consensus 332 ~~~~e~al~r~~~~v~pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~ 409 (1167)
+..|+++++ ++|. +..+|..++..+...|++++|+..|++++..+|.+.++|..++.++...|++++|..
T Consensus 156 ~~~~~~al~--------~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 156 KELFLAAVR--------LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp HHHHHHHHH--------HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHH--------HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHH
Confidence 667777776 3332 356788888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH
Q 001064 410 ALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 462 (1167)
Q Consensus 410 vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~ 462 (1167)
.|++++++. |+++.+|+.+|.++...|++++|+..|+++ ++++|++...+.
T Consensus 228 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~ 278 (323)
T d1fcha_ 228 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEA-LNMQRKSRGPRG 278 (323)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHTC-----
T ss_pred HHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCcChhhhh
Confidence 999999877 788899999999999999999999999998 778887765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.9e-18 Score=193.93 Aligned_cols=252 Identities=15% Similarity=0.047 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~ 213 (1167)
..|+..|..+.+.|++++|+.+|+++|+.+|.+.+.|..++..+. ..|++++|+..|++++...|. ....|..++.
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~ 95 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPD---NQTALMALAV 95 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHhhhccccc---cccccccccc
Confidence 557889999999999999999999999999999999999999988 789999999999999996654 5789999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCcc
Q 001064 214 YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDA 293 (1167)
Q Consensus 214 ~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~ 293 (1167)
.....++++.|..+|++++...+.....+. ...
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~~------------------------------ 128 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYTPAYAHLVT-----------------PAE------------------------------ 128 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------------------------------------------
T ss_pred cccccccccccccchhhHHHhccchHHHHH-----------------hhh------------------------------
Confidence 999999999999999998876544211000 000
Q ss_pred ccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHH
Q 001064 294 TEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 373 (1167)
Q Consensus 294 ~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a 373 (1167)
. .. ... . +......+......+.+.++
T Consensus 129 ----------------~---~~-----~~~--------------~---------------~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 129 ----------------E---GA-----GGA--------------G---------------LGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp -----------------------------------------------------------------CTTHHHHHHHHHHHH
T ss_pred ----------------h---hh-----hhc--------------c---------------cccchhhHHHHHHhhHHHHH
Confidence 0 00 000 0 00000111111234456789
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001064 374 VKLYERCLIACANY--PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 451 (1167)
Q Consensus 374 ~~~yeral~~~p~~--~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 451 (1167)
+..|++++..+|.. +.+|..++.++...|++++|+..|++++... |+++.+|..++.++...|++++|+..|+++ +
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l 233 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRA-L 233 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHH-H
Confidence 99999999998764 6789999999999999999999999999987 889999999999999999999999999998 7
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 452 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 452 ~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
+++|++..+|+.++.++.++|++++|+..|++||++.|.+
T Consensus 234 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 8999999999999999999999999999999999998854
|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein UBP1 species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.69 E-value=1.9e-16 Score=153.97 Aligned_cols=82 Identities=21% Similarity=0.406 Sum_probs=75.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++|+++|+++|++||.|++|.| ++++.+|+++|||||+|.+.++|..||+. +|+.|+|+.|+|+++
T Consensus 41 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a 119 (139)
T d1u6fa1 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKI-VCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEE-EEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhcccccccc-ccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4578999999999999999999999999999886 66788999999999999999999999986 899999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 120 ~~~~ 123 (139)
T d1u6fa1 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding region containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.9e-16 Score=145.00 Aligned_cols=84 Identities=20% Similarity=0.354 Sum_probs=75.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+...++|||+|||+.+|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+.++..|+|+.|+|+.
T Consensus 7 d~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~ 85 (103)
T d2cqda1 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV-ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 85 (103)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-SCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCcCcHHHHHHHHhhcccccceec-cccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 335688999999999999999999999999999875 6688889999999999999999999999865689999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
+..+.
T Consensus 86 a~~~~ 90 (103)
T d2cqda1 86 AYLGA 90 (103)
T ss_dssp STTTC
T ss_pred cCCCC
Confidence 87643
|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=2.2e-16 Score=143.57 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=75.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+.+
T Consensus 7 ~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i-~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a 85 (99)
T d1whwa_ 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHY-PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCceeeee-cccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3578999999999999999999999999999875 56788899999999999999999999976 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 86 ~~~~~ 90 (99)
T d1whwa_ 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCCc
Confidence 87643
|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.6e-16 Score=139.42 Aligned_cols=79 Identities=19% Similarity=0.380 Sum_probs=73.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||+++|+++|+++|++||.|.+++| ++++.+|+++|||||+|.+.+++++||+.+++.|+|+.|+|..+.
T Consensus 5 ~~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A~ 83 (84)
T d1l3ka1 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 83 (84)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhhccccceee-cccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEeee
Confidence 4589999999999999999999999999999886 678889999999999999999999999999999999999998764
|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CUG triplet repeat RNA-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3e-16 Score=143.31 Aligned_cols=83 Identities=19% Similarity=0.446 Sum_probs=76.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||+++++++|+++|++||.|.++.+ +.++.+|+++|||||+|.+.++|..||+. +|..|+|+.|+|+++
T Consensus 17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~-~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a 95 (102)
T d2cpza1 17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKV-FIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 95 (102)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEE-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhccccccce-eeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4688999999999999999999999999999875 66888899999999999999999999975 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 96 ~~k~~ 100 (102)
T d2cpza1 96 RSKND 100 (102)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 88754
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=2.6e-16 Score=139.65 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=75.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++|+++|+++|++||.|.+|++ ++++.+|+++|||||+|.+.++|++|+.. +|..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i-~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a 84 (88)
T d1rk8a_ 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 84 (88)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCcccccc-cccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 5799999999999999999999999999999875 56788999999999999999999999976 999999999999999
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
.++
T Consensus 85 ~~k 87 (88)
T d1rk8a_ 85 FVK 87 (88)
T ss_dssp EEC
T ss_pred cCC
Confidence 875
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.64 E-value=2.3e-16 Score=138.26 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=73.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+++|||+|||.++|+++|+++|++||.|++++| ++++.+|+++|||||+|.+.++|++||+. +|..|+|+.|+|++++
T Consensus 2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~ 80 (82)
T d1b7fa1 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRI-MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 80 (82)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeee-eeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 478999999999999999999999999999875 56788899999999999999999999976 9999999999999987
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
|
T Consensus 81 p 81 (82)
T d1b7fa1 81 P 81 (82)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.7e-16 Score=141.27 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=75.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 4 ~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a 82 (89)
T d2cqba1 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82 (89)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhhCCeEEeccc-ccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 3589999999999999999999999999999875 66788899999999999999999999976 899999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
++++
T Consensus 83 ~p~~ 86 (89)
T d2cqba1 83 KPMR 86 (89)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.9e-16 Score=139.92 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=75.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|..||+. +|..|+|+.|+|+++
T Consensus 6 ~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a 84 (93)
T d1h2vz_ 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 84 (93)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCcceecc-ccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4689999999999999999999999999999875 66788899999999999999999999986 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
++.
T Consensus 85 ~~~ 87 (93)
T d1h2vz_ 85 AGF 87 (93)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins A2/B1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.1e-16 Score=144.11 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=76.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||||||+++|+++|+++|++||.|..+.| .+++.+++++|||||+|.+.++|.+||+.+++.|+|+.|.|..+.
T Consensus 19 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i-~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a~ 97 (103)
T d1x4ba1 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVV-MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 97 (103)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEE-ECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhhCcccceee-cccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEECc
Confidence 4589999999999999999999999999999875 567788999999999999999999999989999999999999988
Q ss_pred CCCC
Q 001064 1110 PNTG 1113 (1167)
Q Consensus 1110 ~~~~ 1113 (1167)
++..
T Consensus 98 ~ke~ 101 (103)
T d1x4ba1 98 AREE 101 (103)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7643
|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=8.1e-17 Score=138.64 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=71.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
++|||+|||+++|+++|+++|++||.|.+++| ++++.+|++||||||+|.+.+++++||+.+++.|+||.|+|..+
T Consensus 1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V~~A 76 (77)
T d1uawa_ 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhCCcceeee-ecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 47999999999999999999999999999876 56888999999999999999999999999999999999999865
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.8e-16 Score=135.90 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=69.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+|||||||+++|+++|+++|++||.|.++.| ++++.+|+++|||||+|.+.++|++||+.++..|+|+.|.|..
T Consensus 1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i-~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~r 74 (75)
T d1hd0a_ 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL-KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR 74 (75)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECC
T ss_pred CEEEeCCCCcCCHHHHHHHHHhhcccccccc-ccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEeeE
Confidence 5999999999999999999999999999875 6688899999999999999999999999899999999999864
|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.9e-16 Score=139.91 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=76.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|++||+. +|..|+|+.|+|+++
T Consensus 8 ~~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~-~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A 86 (93)
T d1x5ua1 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 86 (93)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhCCccccce-eecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4589999999999999999999999999999875 67888999999999999999999999976 899999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 87 ~~~~ 90 (93)
T d1x5ua1 87 SAHN 90 (93)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8764
|
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.2e-16 Score=135.99 Aligned_cols=78 Identities=24% Similarity=0.430 Sum_probs=73.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||.++++++|+++|++||.|.+|++ +++..+|+++|||||+|.+.++|++|++. +|..|+|+.|+|++++|
T Consensus 3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~AkP 81 (82)
T d1fxla1 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL-VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (82)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCcccccc-eeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 67999999999999999999999999999886 56788899999999999999999999976 99999999999999986
|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=1.6e-16 Score=140.34 Aligned_cols=83 Identities=22% Similarity=0.401 Sum_probs=72.0
Q ss_pred CccEEEEecCCCCCC-HHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVT-AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||++++ +++|+++|++||.|.+|+|...++.+|+++|||||+|.+.++|.+||+.+|..|+|+.|+|+++
T Consensus 3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a 82 (86)
T d2ghpa3 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLA 82 (86)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEEEEEc
Confidence 469999999999976 5669999999999999886555667899999999999999999999988999999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
.+++
T Consensus 83 ~~kP 86 (86)
T d2ghpa3 83 DKKP 86 (86)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.2e-16 Score=137.79 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=73.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|.+||+. +..|+|+.|.|..+.
T Consensus 7 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~srG~aFV~f~~~~~a~~al~~-~~~l~Gr~i~v~~a~ 84 (90)
T d2cqga1 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLPN 84 (90)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECCC
T ss_pred CCCeEEEECCCCCCCHHHHHHHHHhhcccceeee-ccCCCCcccCCEEEEEECCHHHHHHHHhc-CCccCCEEeEEEeCC
Confidence 4588999999999999999999999999999986 66888999999999999999999999984 558999999999987
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 85 ~k~ 87 (90)
T d2cqga1 85 SKQ 87 (90)
T ss_dssp TTC
T ss_pred CCC
Confidence 754
|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 3 subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.8e-16 Score=138.54 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=76.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+..+|||+|||.++++++|+++|++||.|.+|.| +.++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|+++
T Consensus 7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i-~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~a 85 (90)
T d2cq0a1 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYL-AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 85 (90)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccccccc-cccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEee
Confidence 4588999999999999999999999999999875 56778899999999999999999999986 899999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 86 kp~~ 89 (90)
T d2cq0a1 86 KPST 89 (90)
T ss_dssp SCCC
T ss_pred eCCC
Confidence 8764
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5.2e-16 Score=134.97 Aligned_cols=76 Identities=26% Similarity=0.337 Sum_probs=71.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+|||||||+++|+++|+++|++||+|.+|+| ++++.+|+++|||||+|.+.++|..|++. +|..|+|+.|+|++++
T Consensus 2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~ 78 (80)
T d1cvja1 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 78 (80)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEE-EecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 6999999999999999999999999999986 67888999999999999999999999976 8999999999999985
|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein D0 (AUF1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.4e-16 Score=136.21 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=69.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
+|||||||+++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|++||+.+++.|+|+.|.|..+
T Consensus 1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i-~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~vk~A 75 (75)
T d1x0fa1 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL-PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHSCEEEEEC-CCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEEECC
T ss_pred CEEEcCCCCCCCHHHHHHHHHHhCCcccccc-cccccccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEEEEC
Confidence 6999999999999999999999999999875 56788999999999999999999999988889999999998754
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.8e-16 Score=137.41 Aligned_cols=80 Identities=21% Similarity=0.438 Sum_probs=74.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
.+|||+|||.++|+++|+++|++||+|.+|+| ++++.+|+++|||||+|.+.++|..|++. +|..|+|+.|+|+++.+
T Consensus 2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i-~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~ 80 (85)
T d2u2fa_ 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 80 (85)
T ss_dssp CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEE-ECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCccceEEe-eccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 57999999999999999999999999999876 66888999999999999999999999997 89999999999999976
Q ss_pred CC
Q 001064 1111 NT 1112 (1167)
Q Consensus 1111 ~~ 1112 (1167)
..
T Consensus 81 ~~ 82 (85)
T d2u2fa_ 81 GA 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=6e-16 Score=135.84 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=72.8
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccCCC
Q 001064 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPNT 1112 (1167)
Q Consensus 1034 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~~~ 1112 (1167)
|||+|||+++|+++|+++|++||.|.++...++++.+|+++|||||+|.+.++|++||+. +|..|+|+.|+|+++.++.
T Consensus 1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~k~ 80 (83)
T d1x5ta1 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 80 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecCCC
Confidence 799999999999999999999999977644467888999999999999999999999986 8999999999999998764
Q ss_pred C
Q 001064 1113 G 1113 (1167)
Q Consensus 1113 ~ 1113 (1167)
.
T Consensus 81 ~ 81 (83)
T d1x5ta1 81 S 81 (83)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA binding protein 23 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.9e-16 Score=143.97 Aligned_cols=80 Identities=20% Similarity=0.405 Sum_probs=74.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||+++|+++|+++|+.||.|++|+| ++++.+|++||||||+|.+.++|.+||+.+|..|+|+.|+|..+.
T Consensus 17 ~~~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i-~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~~a~ 95 (101)
T d2cq4a1 17 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRI-ISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 95 (101)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHcCCCeEEEEEe-eecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 4589999999999999999999999999999875 678889999999999999999999999889999999999999875
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
+
T Consensus 96 ~ 96 (101)
T d2cq4a1 96 A 96 (101)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3e-14 Score=158.95 Aligned_cols=209 Identities=9% Similarity=0.044 Sum_probs=179.6
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhccChHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g-~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
.+|...+++..+...+.+.+.+++|+.+|++||..+|.+..+|...+.++...| ++++|+..+++++++. |++..+|.
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~ 116 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 116 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHH
Confidence 567777888888888889999999999999999999999999999999998876 5899999999999988 89999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 507 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~ 507 (1167)
..+.++...|++++|+..|+++ ++++|++..+|..++.++..+|++++|+..|+++|+++|.+ ...|.+.+.+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~ka-l~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n------~~a~~~r~~~ 189 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADI-LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQRYFV 189 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred HHhHHHHhhccHHHHHHHHhhh-hhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc------HHHHHHHHHH
Confidence 9999999999999999999998 78999999999999999999999999999999999998643 5678777776
Q ss_pred HHHHhCC------HHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 508 LHLVSRN------AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 508 ~~~~~g~------~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
+.. .++ +++|...+.++|+..|++...|..+..+....+ .+.+..++++++...++..
T Consensus 190 l~~-~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~----~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 190 ISN-TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG----LSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp HHH-TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC----GGGCHHHHHHHHHHTTTCC
T ss_pred HHH-ccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC----hHHHHHHHHHHHHhCCCcC
Confidence 554 444 689999999999999999999976666543333 2234566777766655543
|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.1e-15 Score=132.82 Aligned_cols=77 Identities=18% Similarity=0.385 Sum_probs=71.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.++|||||||+++|+++|+++|++||.|..+.+ ..++.+++++|||||+|.+.+++.+|++.+|..|+||.|+|+.+
T Consensus 2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~-~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~~A 78 (79)
T d1l3ka2 2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 78 (79)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCEEEECCCCCcCCHHHHHHHHHHhcccccccc-ccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 489999999999999999999999999999875 56777899999999999999999999998999999999999864
|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cold-inducible RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=9e-16 Score=136.96 Aligned_cols=83 Identities=23% Similarity=0.442 Sum_probs=75.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||||||+++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.++++|+.||.. +|+.|+|+.|+|+++
T Consensus 4 ~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a 82 (90)
T d1x5sa1 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV-VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 (90)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEE-CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHhhhccccccceee-ccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4588999999999999999999999999999864 56778899999999999999999999976 999999999999998
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
.++..
T Consensus 83 ~~~~~ 87 (90)
T d1x5sa1 83 GKSSD 87 (90)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 77543
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.4e-15 Score=133.39 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=70.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
++++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V 83 (83)
T d2cqca1 8 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83 (83)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEE-EECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCCccccc-cccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence 4689999999999999999999999999999875 56888899999999999999999999975 999999999987
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=1.5e-15 Score=171.27 Aligned_cols=151 Identities=12% Similarity=0.088 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CH
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG--SM 149 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~--------~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~--~~ 149 (1167)
+++++.+.++|+.||++.++|......+..+. .+.+++++.+|++++..+|.+..+|..++.+....+ ++
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 45566666666666666666655444443321 133555666666666666666666666655554433 35
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001064 150 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 229 (1167)
Q Consensus 150 e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~ 229 (1167)
++|+..++++|..+|.+...|...+.......+.+++|+..|++++.. ++.....|...+..+...++++.|...|+
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~---~p~~~~a~~~l~~~~~~~~~~~~A~~~~~ 202 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 566666666666666666655444332222445566666666666653 23334555555555444444444444443
Q ss_pred HHHh
Q 001064 230 RILE 233 (1167)
Q Consensus 230 r~l~ 233 (1167)
+++.
T Consensus 203 ~~~~ 206 (334)
T d1dcea1 203 LPEN 206 (334)
T ss_dssp SCHH
T ss_pred HhHH
Confidence 3333
|
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=1.7e-15 Score=136.07 Aligned_cols=83 Identities=24% Similarity=0.356 Sum_probs=74.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g~~l~V~~ 1107 (1167)
..++|||+|||+++++++|+++|++||.|++|+|......+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 7 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~ 86 (94)
T d2cpha1 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 86 (94)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEE
Confidence 4588999999999999999999999999999876433355899999999999999999999975 79999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 87 A~~~~ 91 (94)
T d2cpha1 87 ADSEV 91 (94)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98753
|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 4B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3e-15 Score=137.42 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=72.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||+++|+++|+++|+.|| |..+.+...+..+|+++|||||+|.+.++|++|++.++..|+|+.|+|+++.
T Consensus 14 p~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a~ 92 (104)
T d1wi8a_ 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 468999999999999999999999999 6666554445567899999999999999999888889999999999999987
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 93 ~~~ 95 (104)
T d1wi8a_ 93 QAQ 95 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.59 E-value=3.3e-16 Score=139.63 Aligned_cols=80 Identities=13% Similarity=0.268 Sum_probs=73.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++||.|.++.| .++.+|+++|||||+|.+.+++.+||+.+|..|+|+.|+|++++
T Consensus 12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v--~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~~ak 89 (91)
T d1fjeb1 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV--VDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (91)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC--CEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCcEEEEeCccCcchHHHHHHHHhcCCcEEEeee--eecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEEEecC
Confidence 4689999999999999999999999999999765 34568999999999999999999999889999999999999987
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
+|
T Consensus 90 ~k 91 (91)
T d1fjeb1 90 GR 91 (91)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.58 E-value=2.3e-15 Score=132.59 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=71.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
.+++|||+|||.++++++|+++|++||.|.++++ ++++.+|+++|||||+|.+.++|.+||+. +|..+.| ++|+|+
T Consensus 5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~-~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~ 83 (85)
T d1b7fa2 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNI-LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 83 (85)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeee-ecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEE
Confidence 4688999999999999999999999999999885 66788999999999999999999999986 8888876 889998
Q ss_pred ec
Q 001064 1107 ER 1108 (1167)
Q Consensus 1107 ~~ 1108 (1167)
++
T Consensus 84 ~A 85 (85)
T d1b7fa2 84 LA 85 (85)
T ss_dssp EC
T ss_pred EC
Confidence 75
|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein EWS species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.8e-15 Score=136.98 Aligned_cols=88 Identities=17% Similarity=0.278 Sum_probs=75.9
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeee------E-eeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG------V-FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1098 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i-~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i 1098 (1167)
++.+.++|||+|||+++|+++|+++|+.||.|+.+. + ..+++.+|+++|||||+|.+.++|.+||+. +|..|
T Consensus 4 ~~~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 83 (101)
T d2cpea1 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 83 (101)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEE
Confidence 344679999999999999999999999999986421 1 234567899999999999999999999986 89999
Q ss_pred eCcEeEEEeccCCCCC
Q 001064 1099 AGRQVYIEERRPNTGS 1114 (1167)
Q Consensus 1099 ~g~~l~V~~~r~~~~~ 1114 (1167)
+||.|+|++++++.+.
T Consensus 84 ~gr~i~V~~a~~~~p~ 99 (101)
T d2cpea1 84 QGSKLKVSLARKKPPM 99 (101)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCEEEEEEEcCCCCCC
Confidence 9999999999987654
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.2e-15 Score=132.57 Aligned_cols=77 Identities=23% Similarity=0.401 Sum_probs=70.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCc--EeEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR--QVYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~--~l~V~~ 1107 (1167)
+++|||+|||.++|+++|+++|++||.|.+++| ++++.+|+++|||||+|.+.++|.+|++. ||..++|+ +|+|.+
T Consensus 6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i-~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~ 84 (85)
T d1fxla2 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 84 (85)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccc-ccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEe
Confidence 578999999999999999999999999999986 56788899999999999999999999976 89999984 488887
Q ss_pred c
Q 001064 1108 R 1108 (1167)
Q Consensus 1108 ~ 1108 (1167)
+
T Consensus 85 A 85 (85)
T d1fxla2 85 A 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.4e-15 Score=132.94 Aligned_cols=83 Identities=25% Similarity=0.407 Sum_probs=72.7
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
++.+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+ ++|||||+|.+.++|..|+.. +|..|+|+.|+|
T Consensus 4 d~~~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~~--~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 80 (90)
T d2cqia1 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 80 (90)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-ECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCceeeee-ecccCc--cceeeEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3446789999999999999999999999999999875 445544 479999999999999999986 999999999999
Q ss_pred EeccCCC
Q 001064 1106 EERRPNT 1112 (1167)
Q Consensus 1106 ~~~r~~~ 1112 (1167)
.++++..
T Consensus 81 ~~a~~~~ 87 (90)
T d2cqia1 81 NWATTPS 87 (90)
T ss_dssp EECCCTT
T ss_pred EEcCCCC
Confidence 9998643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=1.4e-15 Score=171.45 Aligned_cols=261 Identities=11% Similarity=-0.012 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh-cCC
Q 001064 115 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARV----------GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT-YGD 183 (1167)
Q Consensus 115 ~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~----------~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~-~~~ 183 (1167)
.++|+.+|+++|..+|++..+|.....+.... +.+++|..+|+++|+.+|.+..+|...+..+... .++
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~ 124 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence 47999999999999999999998777665543 3478999999999999999999999998877732 235
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHH
Q 001064 184 PETIRRLFERGLAYVGTDYLSFPLWD-KYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 262 (1167)
Q Consensus 184 ~~~Ar~~feral~~~g~d~~s~~lw~-~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 262 (1167)
.+++...+++++...+. ....|. .........+.++.|...|++++++.+.+...++.....+.....
T Consensus 125 ~~~a~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~-------- 193 (334)
T d1dcea1 125 WARELELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP-------- 193 (334)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC--------
T ss_pred HHHHHHHHHHHHhhCch---hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--------
Confidence 88999999999996444 344443 333555556777788888888888777777666654433322111
Q ss_pred HHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001064 263 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 342 (1167)
Q Consensus 263 e~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~ 342 (1167)
+++++..++++++
T Consensus 194 -----------------------------------------------------------------~~~A~~~~~~~~~-- 206 (334)
T d1dcea1 194 -----------------------------------------------------------------QPDSGPQGRLPEN-- 206 (334)
T ss_dssp -----------------------------------------------------------------CCCSSSCCSSCHH--
T ss_pred -----------------------------------------------------------------HHHHHHHHHHhHH--
Confidence 1111111111111
Q ss_pred CcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC
Q 001064 343 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL 422 (1167)
Q Consensus 343 ~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~ 422 (1167)
+.+.....+..+ ...+..+.+...|.+++...|.+...|...+..+...++.++|...+.+++..+ |.+
T Consensus 207 ------~~~~~~~~~~~~----~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~ 275 (334)
T d1dcea1 207 ------VLLKELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWC 275 (334)
T ss_dssp ------HHHHHHHHHHHH----HHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHH
T ss_pred ------hHHHHHHHHHHH----HHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chH
Confidence 111112222221 123444556667777777777666666666666666666777777777777665 566
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
..+|+.++.++...|++++|+..|+++ ++++|+....|..++
T Consensus 276 ~~~~~~l~~~~~~~~~~~eA~~~~~~a-i~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 276 LLTIILLMRALDPLLYEKETLQYFSTL-KAVDPMRAAYLDDLR 317 (334)
T ss_dssp HHHHHHHHHHHCTGGGHHHHHHHHHHH-HHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCcccHHHHHHHH
Confidence 667777777777777777777777776 666776666665444
|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=2e-15 Score=131.80 Aligned_cols=78 Identities=10% Similarity=0.247 Sum_probs=66.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||+++|+++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|++++|
T Consensus 2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~-~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~P 80 (81)
T d2ghpa1 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIR-LPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 80 (81)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEE-CC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cEEEEECCCCcCCHHHHHHHHHHhCcEEeeee-ecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 68999999999999999999999999988754 56677899999999999999999999976 99999999999999886
|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=7.3e-15 Score=131.58 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=72.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+...++|||+|||+++++++|+++|++||.|++|++ +.++ +.++|||||+|.+.++|.+||.. +|..|+|+.|+|+
T Consensus 8 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~-~~~~--~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~ 84 (93)
T d2cq3a1 8 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 84 (93)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEE-ECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhhcceeeeccc-cccc--cCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 335689999999999999999999999999999875 3343 33789999999999999999976 9999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++..
T Consensus 85 ~A~~r~~ 91 (93)
T d2cq3a1 85 NATARVM 91 (93)
T ss_dssp ECCSSCC
T ss_pred ecCcCCC
Confidence 9988643
|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cleavage stimulation factor, 64 kda subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.2e-15 Score=140.19 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=74.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|+++
T Consensus 7 ~~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i-~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a 85 (104)
T d1p1ta_ 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRL-VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEE-EEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCCEEEEECCCCcCCHHHHHHhhhcccccccccc-ccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4588999999999999999999999999999876 56788899999999999999999999987 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
.++
T Consensus 86 ~~~ 88 (104)
T d1p1ta_ 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCC
Confidence 764
|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Neural RNA-binding protein Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=2e-15 Score=129.78 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=69.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
+|||||||+++|+++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.+++.+|++.+|+.|+|+.|+|..+
T Consensus 1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~-~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~~A 75 (75)
T d2msta_ 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML-MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC-BCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHHhCCcceeee-eeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEEEEC
Confidence 5999999999999999999999999999864 56777899999999999999999999998999999999999864
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=3.9e-15 Score=131.17 Aligned_cols=77 Identities=17% Similarity=0.364 Sum_probs=68.1
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc---ccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV---VGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1034 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g---~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
|||+|||+++|+++|+++|++||.|++|.|. +++.++ ++||||||+|.+.++|.+|++. +|..|+|+.|+|++++
T Consensus 1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~-~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~ 79 (85)
T d2cpfa1 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTIS-KKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 79 (85)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-EEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred CEEcCCCCCCCHHHHHHHHHHhCCcccccee-cccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 7999999999999999999999999999864 343333 5789999999999999999976 8999999999999986
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
..
T Consensus 80 ~~ 81 (85)
T d2cpfa1 80 RA 81 (85)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 28 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=4.7e-15 Score=134.71 Aligned_cols=84 Identities=27% Similarity=0.343 Sum_probs=74.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C------CCeeeCc
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S------PIQLAGR 1101 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~------~~~i~g~ 1101 (1167)
.++++|||+|||+++|+++|+++|++||.|.++.+ +.++.+++++|||||+|.+.++|.+||+. + |..|+||
T Consensus 6 ~~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~-~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr 84 (98)
T d1x4ha1 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV-VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 84 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHhccccceeeee-ccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCE
Confidence 35789999999999999999999999999998764 56777889999999999999999999985 3 6789999
Q ss_pred EeEEEeccCCCC
Q 001064 1102 QVYIEERRPNTG 1113 (1167)
Q Consensus 1102 ~l~V~~~r~~~~ 1113 (1167)
.|+|++++++..
T Consensus 85 ~l~v~~a~~k~~ 96 (98)
T d1x4ha1 85 QLKVDLAVTRDE 96 (98)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCc
Confidence 999999987654
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=5.2e-15 Score=127.80 Aligned_cols=75 Identities=27% Similarity=0.352 Sum_probs=68.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+|||+|||+++++++|+++|++||.|.+++| ..+ .+|+++|||||+|.+.++|.+|++. +|..++|+.|+|+.+.
T Consensus 2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i-~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~ 77 (78)
T d1no8a_ 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAV-HYD-RSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 77 (78)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-SCS-SCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCCeEEEE-EEe-eccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 6999999999999999999999999999875 333 5789999999999999999999986 9999999999999875
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.1e-14 Score=155.86 Aligned_cols=205 Identities=9% Similarity=-0.001 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCHH
Q 001064 311 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANYPE 389 (1167)
Q Consensus 311 ~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g-~~~~a~~~yeral~~~p~~~~ 389 (1167)
....+..++.++.+.+.+++|+..|+++|+ ++|.+..+|...+..+...+ ++++++..|++++..+|.+..
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~--------lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~ 113 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIE--------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 113 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHH--------HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh
Confidence 333444556678888999999999999999 89999999999999888766 589999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 469 (1167)
+|...+.++...|++++|+..|.+++++. |++..+|...+.++...|++++|+..|+++ ++++|.+..+|..++.+..
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~a-l~~~p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQL-LKEDVRNNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH-HHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999987 899999999999999999999999999998 8899999999999998887
Q ss_pred HcCC------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 470 RLGN------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 470 r~g~------~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
+.++ +++|+..|.++|...|.+ ..+|..++.+ +. ...++++..++++++++.|+..
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~~~P~~------~~~~~~l~~l-l~-~~~~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIKLVPHN------ESAWNYLKGI-LQ-DRGLSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHH-HT-TTCGGGCHHHHHHHHHHTTTCC
T ss_pred HccccchhhhhHHhHHHHHHHHHhCCCc------hHHHHHHHHH-HH-hcChHHHHHHHHHHHHhCCCcC
Confidence 7766 689999999999999753 5677777666 33 4557899999999999887653
|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6e-15 Score=129.57 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=71.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||.++|+++|+++|+.||.|..|.+ ....+|+++|||||+|.+.++|.+||+.++..++|+.|.|.++.
T Consensus 5 ~~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l--~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 82 (85)
T d1zh5a2 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM--RRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 82 (85)
T ss_dssp HTTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE--EECTTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEEEEGG
T ss_pred CcCEEEEECCCCCCCHHHHHHHHHHhccccccee--eeeccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 4589999999999999999999999999999764 34457899999999999999999999889999999999998764
|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.8e-15 Score=129.94 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=70.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
..+|||+|||+++|+++|+++|++||.|.+++| +.++ +.++|||||+|.+.++|++||+. +|..|+|+.|+|++++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~ 84 (89)
T d1cvja2 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV-VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 84 (89)
T ss_dssp TTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEE-CCBT--TBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEE-Eeec--CCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 367999999999999999999999999999876 3343 34789999999999999999976 8999999999999998
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 85 ~~~ 87 (89)
T d1cvja2 85 SRK 87 (89)
T ss_dssp CTT
T ss_pred CCC
Confidence 764
|
| >d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.2e-14 Score=131.38 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=73.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
....|||+|||+++|+++|+++|+.||.|..+. .+.++.+++++|||||+|.+.++|++|++.++..|+||.|+|..++
T Consensus 14 ~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v-~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~~ 92 (104)
T d1wg5a_ 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGM-TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEE-ECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEE-EEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEECC
Confidence 446799999999999999999999999988753 4566778899999999999999999999889999999999999887
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 93 ~~~ 95 (104)
T d1wg5a_ 93 RAE 95 (104)
T ss_dssp TTT
T ss_pred HHH
Confidence 653
|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5.7e-15 Score=130.79 Aligned_cols=76 Identities=22% Similarity=0.276 Sum_probs=67.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++||.|.+|.+ .+.++|||||+|.+.++|++||. +++.|+|+.|+|++++
T Consensus 4 ~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~------~~~~~gfafV~f~~~~~a~~a~~-~~~~i~g~~l~v~~a~ 76 (88)
T d1wf0a_ 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI------PKPFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC------CSSCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEE------eeccCceEEEEECCHHHHHHHHh-CCCEECCEEeEEEeCC
Confidence 3589999999999999999999999999998643 13467999999999999999986 7899999999999987
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 77 ~k~ 79 (88)
T d1wf0a_ 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.9e-14 Score=128.21 Aligned_cols=78 Identities=28% Similarity=0.476 Sum_probs=69.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||+++|+++|+++|++||.|..+.+ . .++.++|||||+|.+.++|..||+. +++.|+|+.|+|+++
T Consensus 13 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~--~--~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a 88 (95)
T d1x4aa1 13 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL--K--NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 88 (95)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE--C--CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEe--c--ccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 4578999999999999999999999999988653 2 2345789999999999999999976 999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
++.
T Consensus 89 ~~~ 91 (95)
T d1x4aa1 89 RSG 91 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.2e-14 Score=128.37 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=65.6
Q ss_pred CccEEEEecCC-CCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..++|||+||| ..+++++|+++|++||.|.+|+| +||||||+|++.++|.+||+. +|..|+|+.|+|++
T Consensus 14 ~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i---------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 84 (98)
T d1wf2a_ 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV---------HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL 84 (98)
T ss_dssp CCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE---------ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE---------eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45789999996 57889999999999999999764 468999999999999999987 89999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
+++.
T Consensus 85 a~~~ 88 (98)
T d1wf2a_ 85 AAEP 88 (98)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8764
|
| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.50 E-value=2.2e-14 Score=129.33 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=69.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||+++|+++|+++|++||.|..+. .+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|++
T Consensus 14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~------~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~ 87 (96)
T d1fjca_ 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVS------QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEE------ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcccceeee------ecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3569999999999999999999999999987532 2567899999999999999999976 89999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
+.+++
T Consensus 88 a~~k~ 92 (96)
T d1fjca_ 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred eCCCC
Confidence 98764
|
| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.3e-14 Score=130.61 Aligned_cols=80 Identities=19% Similarity=0.088 Sum_probs=69.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
..+++|||+|||+++|+++|+++|+.||.+ .|.+ + ...+|+++|||||+|.+.++|++||+.++..|+||.|+|.++
T Consensus 13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~~~-~v~~-~-~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V~~s 89 (102)
T d1weza_ 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHI-E-IGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEE-E-ESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHhccCcc-eeee-E-EecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 356899999999999999999999999854 5543 3 344688999999999999999999988999999999999987
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
.++
T Consensus 90 ~~~ 92 (102)
T d1weza_ 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 41, RBM41 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9.5e-15 Score=133.62 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=75.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++++++|+++|++||.|..+.+ +.+..+|+++|||||+|.+.++|..||+. +|..|+|+.|+|+++
T Consensus 17 ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~-~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 95 (102)
T d2cpxa1 17 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPI-QFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 95 (102)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCC-EEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhccceeeEEe-ecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4689999999999999999999999999999865 45666889999999999999999999977 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 96 k~k~~ 100 (102)
T d2cpxa1 96 KNKKQ 100 (102)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88643
|
| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5.9e-15 Score=135.12 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=71.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
...+|||+|||+++|+++|+++|+.||.|..+. .+....+|+++|||||+|.+.++|++||+.++..|+||.|.|..+.
T Consensus 7 ~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~-~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~~~ 85 (103)
T d2cpya1 7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAV-HVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 85 (103)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTE-EECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHhhhhcccceEEEEE-EEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEEEECC
Confidence 347899999999999999999999999988753 3556678999999999999999999999889999999999998764
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4.8e-14 Score=131.68 Aligned_cols=77 Identities=27% Similarity=0.341 Sum_probs=69.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+++|||+|||.++|+++|+++|++||.|++|.+. .+++++|||||+|.+.++|..||+. +|..|+|+.|+|+++
T Consensus 6 ~~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~----~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 81 (114)
T d2f9da1 6 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG----NTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYY 81 (114)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE----CSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCeEeeccc----ccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 35899999999999999999999999999997642 2456799999999999999999976 999999999999987
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
..
T Consensus 82 ~~ 83 (114)
T d2f9da1 82 NA 83 (114)
T ss_dssp CH
T ss_pred CC
Confidence 64
|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=4.3e-14 Score=120.68 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=65.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
++|||+|||+++++++|+++|+.||.|+.|++ .+++. ..+|||||+|.+.++|++||..++..|+|+.|.|+..
T Consensus 1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~-~~~~~--~~~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~~ 74 (75)
T d2ghpa2 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDV-ADSLK--KNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 74 (75)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEE-EECTT--SSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHhcCCceEEEEE-Eeecc--ccceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEEC
Confidence 47999999999999999999999999999875 34443 3467999999999999999988999999999999864
|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.9e-14 Score=128.52 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=70.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCC-ceeeeEeeec-CCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeCcEeEE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRN-RKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1105 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~-~~~g~~kg~afV~F~~~~~a~~Al~~-~--~~~i~g~~l~V 1105 (1167)
+++|||||||.++|+++|+++|++||+ |.++.+ +++ ..+|+++|||||+|.++++|..|++. + ++.++|+.|+|
T Consensus 1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~-~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V 79 (96)
T d2disa1 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV-YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 79 (96)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEEC-CSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEE-eeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEE
Confidence 378999999999999999999999996 888764 344 45688999999999999999999976 3 67788999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++++..
T Consensus 80 ~~A~p~~~ 87 (96)
T d2disa1 80 DWAEPEID 87 (96)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987643
|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.7e-14 Score=126.81 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=68.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++++++|+++|++||.|.+|+| ++ .||||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 17 ~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i-~~------~kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~a 89 (96)
T d1x4ga1 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV-FP------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 89 (96)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEE-Ee------cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3578999999999999999999999999999875 32 368999999999999999976 899999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
++++
T Consensus 90 k~~p 93 (96)
T d1x4ga1 90 KESP 93 (96)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: IGF-II mRNA-binding protein 2 isoform A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.2e-14 Score=121.96 Aligned_cols=75 Identities=24% Similarity=0.345 Sum_probs=66.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeCcEeEEEecc
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGRQVYIEERR 1109 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~-~~i~g~~l~V~~~r 1109 (1167)
.+|||||||.++|+++|+++|++||.|.++.+. +.+|||||+|.+.++|.+|++. +| +.|+|+.|+|+++.
T Consensus 2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~-------~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~ 74 (80)
T d2cqha1 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 74 (80)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEe-------cccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcC
Confidence 469999999999999999999999999876542 3578999999999999999976 77 57999999999998
Q ss_pred CCCC
Q 001064 1110 PNTG 1113 (1167)
Q Consensus 1110 ~~~~ 1113 (1167)
++..
T Consensus 75 ~k~~ 78 (80)
T d2cqha1 75 SKKL 78 (80)
T ss_dssp CCCC
T ss_pred CcCc
Confidence 8643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.3e-12 Score=140.45 Aligned_cols=121 Identities=12% Similarity=-0.057 Sum_probs=109.0
Q ss_pred CCchHHHHHHHHHHhC----CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001064 78 AMSGEEDRLWNIVKAN----SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~n----P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
+.+.++.++.+++... +.....|+.+|..+... |++++|+..|+++|.++|++..+|..+|.++.+.|++++|+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~--g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 3456777888888753 45667999999999985 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
+.|+++|+..|.+.+.|+..+..+. ..|++++|...|+++++..+.+
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 138 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDDPND 138 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHH-HHhhHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999888 7899999999999999976654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=2.2e-12 Score=138.53 Aligned_cols=227 Identities=11% Similarity=-0.024 Sum_probs=165.4
Q ss_pred HHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001064 330 SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHN 409 (1167)
Q Consensus 330 ~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~ 409 (1167)
.++..+++++.+.- ..++.....|...+..+.+.|++++|+..|+++|..+|+++++|..+|.++...|++++|+.
T Consensus 17 ~al~~~~e~l~~~~----~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 17 VILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34444666665321 14556778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 410 ALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 410 vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.|++++++. |+++.+|+.++.++...|++++|...|+++ ++++|++...+...+....+.+..+....+........+
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF-YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHH-HhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 999999988 889999999999999999999999999998 788999887766666666666655555555554444332
Q ss_pred CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001064 490 GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 569 (1167)
Q Consensus 490 ~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~ 569 (1167)
.. .....+...++.. . ..+..+.+...+..++...|+....|..++.+....++ .+.+..+|++++..+|++
T Consensus 171 ~~---~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 171 EQ---WGWNIVEFYLGNI-S-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVHN 242 (259)
T ss_dssp CS---THHHHHHHHTTSS-C-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCTT
T ss_pred hh---hhhhHHHHHHHHH-H-HHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCCC
Confidence 11 1111111111110 1 12335556666666666666666666666666666665 666888888888877765
Q ss_pred C
Q 001064 570 P 570 (1167)
Q Consensus 570 ~ 570 (1167)
-
T Consensus 243 ~ 243 (259)
T d1xnfa_ 243 F 243 (259)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: APOBEC1 stimulating protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=9.4e-14 Score=122.39 Aligned_cols=77 Identities=30% Similarity=0.350 Sum_probs=68.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++|+++|+++|++||.|..+.+ ++++|||||+|.+.++|..||.. +|..|+|+.|+|+++
T Consensus 7 ~~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~-------~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~a 79 (86)
T d2cpda1 7 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 79 (86)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE-------EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCCEEEEcCCCCCCCHHHHHHhhcccceeeeEEE-------ccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3489999999999999999999999999987543 34679999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+|+.+
T Consensus 80 kP~~~ 84 (86)
T d2cpda1 80 KPVDK 84 (86)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87643
|
| >d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.8e-14 Score=129.80 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=69.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|..+.+ +.+ .+++++|||||+|.+.++|.+||+. ||..|.|+++.|..+
T Consensus 17 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~-~~~-~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~ 94 (101)
T d1x5oa1 17 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRI-LRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 94 (101)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-EEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcccccceee-ecc-cccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCC
Confidence 4589999999999999999999999999998764 333 5788999999999999999999976 999999999888766
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
+|
T Consensus 95 ~P 96 (101)
T d1x5oa1 95 EP 96 (101)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Negative elongation factor E, NELF-E species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.4e-14 Score=120.74 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=66.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+++|||+|++ +|+++|+++|++||.|.++.+. +.+|||||+|.+.++|..|+.. ||..|+|+.|+|+++
T Consensus 4 ~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~-------~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 74 (79)
T d2bz2a1 4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 74 (79)
T ss_dssp CCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEECCC--CCHHHHHHHHhccCccceeeec-------cCCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46899999996 8999999999999999997642 3468999999999999999976 999999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
++++
T Consensus 75 ~~~P 78 (79)
T d2bz2a1 75 RKQP 78 (79)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8753
|
| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=9.4e-14 Score=122.45 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=69.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..+.|||+|||+++++++|+++|+.||.|.... .+.++.+|+++|||||+|.+.++|++||+. ++..|+||+|+|+.+
T Consensus 8 ~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~-~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~ 86 (86)
T d2cqpa1 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV-CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86 (86)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTC-EEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcccceeEE-EEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 347899999999999999999999999997653 345567899999999999999999999986 899999999999863
|
| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 9 (SFRS9) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=1.1e-13 Score=124.74 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=67.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++||.|+++.| . .+|||||+|.+.++|++||+. ||..|+|+.|+|.+.
T Consensus 14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i--~------~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~ 85 (98)
T d1wg4a_ 14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADV--Q------KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI 85 (98)
T ss_dssp CSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEE--E------TTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhhcccccccc--c------ccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEE
Confidence 4578999999999999999999999999999764 2 358999999999999999976 999999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+.++
T Consensus 86 ~~~~ 89 (98)
T d1wg4a_ 86 RVYP 89 (98)
T ss_dssp EEEC
T ss_pred ecCC
Confidence 7654
|
| >d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.7e-13 Score=121.23 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=66.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee-eCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-AGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i-~g~~l~V~~ 1107 (1167)
++++|||+|||.++|+++|+++|++||.|..+.+ + .++++|||||+|++.++|.+|+.. +|..| +|+.|+|++
T Consensus 9 Ps~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~-~----~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~ 83 (88)
T d2adca2 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK-F----FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 83 (88)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE-E----CSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEE-e----eecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEe
Confidence 5689999999999999999999999999987543 2 234678999999999999999976 88888 589999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++++
T Consensus 84 sk~~ 87 (88)
T d2adca2 84 SKST 87 (88)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8864
|
| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein KIAA1579 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.3e-13 Score=121.68 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=63.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||+++++++|+++|++|| ++.+. + ++.+|||||+|.+.++|.+||+. +++.|+|++|+|++++
T Consensus 5 s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~--~-----~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~ 76 (88)
T d1wg1a_ 5 SSGILVKNLPQDSNCQEVHDLLKDYD-LKYCY--V-----DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSSC-CCCEE--E-----EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCccChHHHHHHHHhcC-ceeee--e-----eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 47899999999999999999999999 33322 2 34689999999999999999976 9999999999999987
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
.+
T Consensus 77 ~~ 78 (88)
T d1wg1a_ 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.1e-13 Score=126.19 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=66.3
Q ss_pred ccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+++|||+|||+ .+|+++|+++|++||.|.+|.| +++ .+|||||+|++.++|.+||+. +|..|.|+.|+|+++
T Consensus 2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i-~~~-----~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s 75 (109)
T d2adca1 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFN-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 75 (109)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEE-CCT-----TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHhhccccceEEE-Eec-----ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 47899999964 6999999999999999999875 333 368999999999999999987 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+.+
T Consensus 76 ~~~ 78 (109)
T d2adca1 76 KHQ 78 (109)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.2e-14 Score=120.84 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=64.4
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1034 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
|||+|||.++|+++|+++|++||.|..+++ ++++.+++++|||||+|.+.++|.+|++. ||..|+|+.|+
T Consensus 1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k 71 (72)
T d1x4ea1 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKA-ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 71 (72)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTSCEEEEEE-ECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CEEeCCCCcCCHHHHHHHHhhhcccccccc-ccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence 799999999999999999999999999875 56778899999999999999999999976 89999998764
|
| >d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: E3 ubiquitin protein ligase CNOT4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=7e-14 Score=123.80 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=65.8
Q ss_pred CccEEEEecCCCCCCHHHH---HHHHhcCCCceeeeEeeecCCCcc---cccEEEEEECCHHHHHHHHHh-CCCeeeCcE
Q 001064 1030 EVKSVYVRNLPSTVTAFEI---EEEFQNFGRIKPDGVFVRNRKDVV---GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1102 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l---~~~F~~~G~i~~v~i~~~~~~~g~---~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~ 1102 (1167)
+.++|||+|||+++++++| +++|++||.|.+|.| ++++.++. .+|||||+|.+.++|.+||+. ||..|+|+.
T Consensus 7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i-~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 85 (89)
T d2cpia1 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI-NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 85 (89)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE-ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred ecCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEE-eeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEE
Confidence 4578999999999999999 678999999999875 45554444 458999999999999999976 999999999
Q ss_pred eEEE
Q 001064 1103 VYIE 1106 (1167)
Q Consensus 1103 l~V~ 1106 (1167)
|+|.
T Consensus 86 lkvS 89 (89)
T d2cpia1 86 LKAS 89 (89)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.6e-13 Score=122.25 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=69.1
Q ss_pred CccEEEEecCCCCCCHHHHHH----HHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEE----EFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++++|||+|||+++++++|++ +|++||.|.+|.+ ..+++++|||||+|.+.++|.+|++. +|..++|+.|+
T Consensus 2 P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~----~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~ 77 (91)
T d1nu4a_ 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV----SRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 77 (91)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEEC----CHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEE----eeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 468999999999999999864 6899999988653 33577899999999999999999976 89999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|++++++.
T Consensus 78 v~~ak~~~ 85 (91)
T d1nu4a_ 78 IQYAKTDS 85 (91)
T ss_dssp EEECSSCC
T ss_pred EEEeCCCc
Confidence 99998753
|
| >d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.42 E-value=2.2e-13 Score=118.92 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=65.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V~~ 1107 (1167)
++++|||+|||.++|+++|+++|++||.|++|++ +++ .+|||||+|.+.++|.+|+.. +|..|. |+.|+|++
T Consensus 7 P~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~-~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ 80 (83)
T d2b0ga1 7 PNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRL-VPN-----RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITF 80 (83)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE-CTT-----TCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHhhhccCccEEEeee-ecc-----cceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEE
Confidence 5689999999999999999999999999999775 322 368999999999999999987 898884 68899999
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
++
T Consensus 81 ak 82 (83)
T d2b0ga1 81 AK 82 (83)
T ss_dssp CC
T ss_pred ec
Confidence 86
|
| >d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=1.4e-13 Score=127.81 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=67.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++++++|+++|++||.|..|.| . +.+|||||+|.+.++|.+||+. ||..|.|+.|+|+++
T Consensus 9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l--~-----~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a 81 (111)
T d1whxa_ 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL--P-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--C-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHhhhhccCCccEEEe--e-----ccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEEC
Confidence 4589999999999999999999999999998653 2 3579999999999999999976 999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 82 ~~~ 84 (111)
T d1whxa_ 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 654
|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Non-POU domain-containing octamer-binding protein, NonO species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=2e-13 Score=119.88 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=67.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|.+|.+ . +.+|||||+|.+.++|.+|++. +|..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~-~------~~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A 79 (86)
T d2cpja1 7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-H------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 79 (86)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-E------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCceEeee-e------cccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3478999999999999999999999999999764 2 2468999999999999999987 999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 80 ~~~ 82 (86)
T d2cpja1 80 CHS 82 (86)
T ss_dssp SCC
T ss_pred CCc
Confidence 764
|
| >d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.4e-13 Score=127.70 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=71.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
++++|||+|||+++|+++|+++|+.||.|..+.+ +.+..+|+++|||||+|.+.++|++|++.++..|+||.|.|..+.
T Consensus 17 ~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~-~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V~~~~ 95 (112)
T d1wela1 17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIY-IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 95 (112)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCE-EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCeEEEEecCCCcCcHHHHhhHHhhcccccccee-eecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEEEEcC
Confidence 4689999999999999999999999999987643 456668999999999999999999999889999999999998764
|
| >d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=7.8e-14 Score=123.06 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=63.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccCC
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPN 1111 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~~ 1111 (1167)
+|||+|||+++|+++|+++|++||.|.++.| . .+|||||+|.+.++|++||.. +|..|+|+.|+|.+.+.+
T Consensus 2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i-~-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~~ 73 (87)
T d3begb1 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADV-Y-------RDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 73 (87)
T ss_dssp CEEEEECCSSCCTTHHHHHHGGGSCEEEEEE-C-------TTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred eEEEECCCCcCCHHHHHHHHhhhcccccccc-c-------ccceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEecC
Confidence 6999999999999999999999999998764 2 238999999999999999975 999999999999877654
|
| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.6e-14 Score=128.67 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=68.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEe----eecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVF----VRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~----~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
++|||||||+++|+++|+++|++||.|..+.+. +.+..+++++|||||+|.+.++|.+|++.+|+.++|+.|+|..
T Consensus 2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r 81 (90)
T d1u2fa_ 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 81 (90)
T ss_dssp CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBC
T ss_pred CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEECC
Confidence 789999999999999999999999998876542 2345678899999999999999999998899999999999974
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
.+
T Consensus 82 ~k 83 (90)
T d1u2fa_ 82 PH 83 (90)
T ss_dssp TT
T ss_pred CC
Confidence 33
|
| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein L-like species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=1.7e-12 Score=118.51 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=67.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V 1105 (1167)
.+++.|||+|||.++|+++|+++|++||.|+++.+ . +.||||||+|++.++|..||.. +++.++|++|+|
T Consensus 13 ~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~-~------~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v 85 (104)
T d1wexa_ 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-M------PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-E------TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEE-E------ecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEE
Confidence 36789999999999999999999999999999754 2 2568999999999999999965 588999999999
Q ss_pred EeccCC
Q 001064 1106 EERRPN 1111 (1167)
Q Consensus 1106 ~~~r~~ 1111 (1167)
.+++.+
T Consensus 86 ~~s~~~ 91 (104)
T d1wexa_ 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEcCCC
Confidence 998764
|
| >d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Ribonucleoprotein PTB-binding 1, Raver-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=5.9e-13 Score=113.49 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=61.7
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccCC
Q 001064 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRPN 1111 (1167)
Q Consensus 1034 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~~ 1111 (1167)
|||+|||+++++++|+++|++|| ++.+. +++++|||||+|.+.++|.+|+.. ||..++|++|+|++++..
T Consensus 1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~-------~~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d 71 (75)
T d1wi6a1 1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCF-------VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD 71 (75)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSC-EEEEE-------EETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred CEEeCCCCcCCHHHHHHHHhccc-cccee-------ecccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence 79999999999999999999999 44422 245789999999999999999976 999999999999998654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=6.9e-11 Score=131.43 Aligned_cols=174 Identities=13% Similarity=0.084 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc------cC
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANY-----PEYWIRYVLCMEASGSMDLAHNALARATHVFVK------RL 422 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~-----~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p------~~ 422 (1167)
...+..++..+...|+++.+...|++++...+.. ...+...+..+...++...+...+.++...... ..
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 3455566777788999999999999999875533 345666677777889999999999999886632 23
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchH
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 498 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~----~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~ 498 (1167)
..++...+.++...|++++|...++++ ..+.+.+ ...+...+.++...|++++|..+|++++.........+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 291 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHT-AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 291 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHS-CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHH-HHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHH
Confidence 456777888899999999999999997 5555443 44567788888999999999999999998765433334445
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 499 MLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 499 ~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
.++..++.+++. .|++++|++.|++|+++.
T Consensus 292 ~~~~~la~~~~~-~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 292 RNLLLLNQLYWQ-AGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHh
Confidence 678888888776 999999999999999864
|
| >d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein 2, PTBP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=9e-13 Score=116.47 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=67.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V 1105 (1167)
.++++|||+|||.++++++|+++|++||.|.++.+ . +.+|||||+|.+.++|.+|++. ++..++|++|+|
T Consensus 6 ~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~-~------~~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v 78 (88)
T d2cq1a1 6 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-L------KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 78 (88)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-E------TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcccccccccc-c------ccceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEE
Confidence 36799999999999999999999999999999764 2 2458999999999999999974 689999999999
Q ss_pred EeccCC
Q 001064 1106 EERRPN 1111 (1167)
Q Consensus 1106 ~~~r~~ 1111 (1167)
++++.+
T Consensus 79 ~~sk~~ 84 (88)
T d2cq1a1 79 QYSNHK 84 (88)
T ss_dssp EECSCS
T ss_pred EECCCC
Confidence 998754
|
| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Putative RNA-binding protein 15B, Rbm15b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=1.3e-12 Score=117.58 Aligned_cols=77 Identities=21% Similarity=0.432 Sum_probs=67.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
+.++|||+|||.++++++|+++|++||.|..+++ + +.+|||||+|.+.++|..|++. ++..|+| ++|+|+
T Consensus 16 Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~-~------~~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~ 88 (97)
T d1whya_ 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-V------KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-C------SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhcccceEee-e------ccccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEE
Confidence 5689999999999999999999999999998764 2 2468999999999999999977 8999987 479999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
++++.+.
T Consensus 89 ~ak~~~~ 95 (97)
T d1whya_ 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987543
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=7.8e-13 Score=121.77 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=67.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee--eCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL--AGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i--~g~~l~V~ 1106 (1167)
+..+|||+|||+++|+++|+++|++||.|.+|.|. ++ +.+|||||+|.+.++|..||.. +|..| +|+.|+|.
T Consensus 6 ~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~-~~----~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~ 80 (108)
T d2adba1 6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-TK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 80 (108)
T ss_dssp CEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEE-EE----TTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEE
T ss_pred CeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEE-ee----CCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEE
Confidence 45899999999999999999999999999998763 33 2579999999999999999987 78777 57789999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 81 ~s~~~~ 86 (108)
T d2adba1 81 FSKLTS 86 (108)
T ss_dssp ECSSCS
T ss_pred ecCCcc
Confidence 887653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=3.4e-10 Score=125.62 Aligned_cols=277 Identities=10% Similarity=-0.044 Sum_probs=184.4
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC----
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY-----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYS---- 166 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~-----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s---- 166 (1167)
..+.....++.+.. .|++++|...|+++|...|.+. .++..++.++...|++++|+..|++++...+..
T Consensus 11 ~ae~~~lrA~~~~~--~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 88 (366)
T d1hz4a_ 11 HAEFNALRAQVAIN--DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 88 (366)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence 34555556666655 5899999999999999999874 467778999999999999999999999865422
Q ss_pred --HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC---C--CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh-
Q 001064 167 --VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY---L--SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ- 238 (1167)
Q Consensus 167 --~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~---~--s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~- 238 (1167)
...+...+..+. ..+++..+...|.+++....... . ...++...+......++++.+...|++++......
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (366)
T d1hz4a_ 89 YALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 167 (366)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence 233444444555 57899999999999987543211 1 12344555666677888999988888887642221
Q ss_pred ----HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHH
Q 001064 239 ----LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKY 314 (1167)
Q Consensus 239 ----~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 314 (1167)
...++..
T Consensus 168 ~~~~~~~~~~~--------------------------------------------------------------------- 178 (366)
T d1hz4a_ 168 PQQQLQCLAML--------------------------------------------------------------------- 178 (366)
T ss_dssp GGGGHHHHHHH---------------------------------------------------------------------
T ss_pred hhhHHHHHHHH---------------------------------------------------------------------
Confidence 1111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----HHH
Q 001064 315 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----PEY 390 (1167)
Q Consensus 315 i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~----~~~ 390 (1167)
...+...+.+..+...+.+++... .......+.....|...+.++...++++++...|++++...+.+ ...
T Consensus 179 ----~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 179 ----IQCSLARGDLDNARSQLNRLENLL-GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp ----HHHHHHHTCHHHHHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred ----HHHHHhhhhHHHHHHHHHHHHHHH-HHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 111122222222222222222100 00011223334566777777788899999999999988776544 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----ccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFV-----KRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~-----p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
|..++.++...|++++|...+++++.... +....+|+..+.++...|++++|+..|+++
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 67778888889999999999999886542 345567888888888899999999988887
|
| >d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=1.9e-12 Score=116.81 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=66.2
Q ss_pred CccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHH---hCCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ---ASPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~---~~~~~i~g~~l~V 1105 (1167)
.+++|||+|||.+ +|+++|+++|++||.|.++.+ + +.+|||||+|.+.++|.+|++ .+++.|+|+.|+|
T Consensus 17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~-~------~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V 89 (99)
T d1x4fa1 17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-M------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 89 (99)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCEEEEeCCcCCccCHHHHHhhhccccceeEEEE-e------ecCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEE
Confidence 5689999999985 899999999999999999764 2 246899999999999999996 3799999999999
Q ss_pred EeccCC
Q 001064 1106 EERRPN 1111 (1167)
Q Consensus 1106 ~~~r~~ 1111 (1167)
++++.+
T Consensus 90 ~~s~~~ 95 (99)
T d1x4fa1 90 DLSEKY 95 (99)
T ss_dssp EEECSC
T ss_pred EEcCCc
Confidence 998754
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=5.4e-12 Score=128.43 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=74.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||..+|+++|+++|+.||.|..+.| +.++.+|+++|||||+|.+.++|.+||+.++..|+|+.|+|..+.
T Consensus 96 ~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i-~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~~~~~~G~~i~V~~A~ 174 (183)
T d1u1qa_ 96 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 174 (183)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHTSSCEEETTEEEEEEECC
T ss_pred ccceeEEccCCCcCCHHHHhhhhccCCceeeeee-ecccccCccceeEEEEECCHHHHHHHHHhCCCeECCEEEEEEecC
Confidence 4589999999999999999999999999999875 567778999999999999999999999888899999999999876
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
++
T Consensus 175 ~k 176 (183)
T d1u1qa_ 175 SK 176 (183)
T ss_dssp CH
T ss_pred Cc
Confidence 54
|
| >d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=6.1e-12 Score=110.92 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=65.6
Q ss_pred CccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V 1105 (1167)
.++.|||+|||.. +|+++|.++|++||.|.++.+ ++ .+++|||+|++.++|..|+.. ++..++|++|+|
T Consensus 7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i-~~------~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V 79 (89)
T d1x4da1 7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LN------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 79 (89)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CS------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEe-ec------cceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEE
Confidence 5689999999986 889999999999999999764 22 357999999999999999974 689999999999
Q ss_pred EeccCC
Q 001064 1106 EERRPN 1111 (1167)
Q Consensus 1106 ~~~r~~ 1111 (1167)
++++..
T Consensus 80 ~~s~~~ 85 (89)
T d1x4da1 80 HLSQKY 85 (89)
T ss_dssp EEECCC
T ss_pred EECCCc
Confidence 998753
|
| >d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Calcipressin-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=1.6e-11 Score=111.45 Aligned_cols=77 Identities=8% Similarity=0.035 Sum_probs=66.1
Q ss_pred CccEEEEecCCCCC-CH----HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEe
Q 001064 1030 EVKSVYVRNLPSTV-TA----FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~-t~----~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l 1103 (1167)
...+|||+||+.++ ++ ++|+++|++||.|.++.+ + +++|||||+|.+.++|.+|+.. +|..|+|+.|
T Consensus 4 ~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~-~------k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l 76 (104)
T d1weya_ 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-F------KSFKRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-E------TTTTEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEE-e------cCCCEEEEEECCHHHHHHHHHHhcccccCCCEe
Confidence 35889999999886 33 569999999999999764 2 3578999999999999999988 8999999999
Q ss_pred EEEeccCCCC
Q 001064 1104 YIEERRPNTG 1113 (1167)
Q Consensus 1104 ~V~~~r~~~~ 1113 (1167)
+|++++++..
T Consensus 77 ~v~~a~~~~~ 86 (104)
T d1weya_ 77 KLYFAQTLHI 86 (104)
T ss_dssp EEECCCCSSC
T ss_pred EEeecccCCC
Confidence 9999986543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=5.3e-10 Score=104.22 Aligned_cols=111 Identities=10% Similarity=-0.004 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
.+.-+..+.+.|++++|+..|+++|..+|.++.+|..+|.++...|++++|+..|.+++++. |+++..|+.++.++...
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence 34455666778999999999999999999999999999999999999999999999999887 78899999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 469 (1167)
|++++|+..|+++ ++++|++..++..+..+..
T Consensus 85 ~~~~~A~~~~~~a-~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 85 NRFEEAKRTYEEG-LKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp TCHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHhC
Confidence 9999999999998 7889999998888877653
|
| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleoporin 35 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=8.2e-11 Score=100.97 Aligned_cols=72 Identities=10% Similarity=0.138 Sum_probs=60.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcE-eEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQ-VYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~-l~V~~~r 1109 (1167)
.+.|+|+|+|++++++.| ++|++||+|.++++ ++.+|||||+|.+.++|++||+.||..|+|+. |.|...+
T Consensus 4 ~~wV~V~G~p~~~~~~il-~~F~~~G~I~~~~~-------~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~ 75 (81)
T d1wwha1 4 DTWVTVFGFPQASASYIL-LQFAQYGNILKHVM-------SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 75 (81)
T ss_dssp GGEEEEECCCGGGHHHHH-HHHHTTSCEEEEEE-------CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred ccEEEEECCChHHHHHHH-HHHHhhhhhheEEe-------cCCCCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCC
Confidence 478999999999987655 58999999988653 34579999999999999999988999999985 6687665
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
.
T Consensus 76 ~ 76 (81)
T d1wwha1 76 D 76 (81)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Splicing factor U2AF subunits domain: U2AF35 (35 KDa subunit) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.3e-11 Score=111.92 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=67.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|++++.++++++|+++|++||.|.+|.| + +..+|+++|||||+|.+.++|.+|++. +|..++||.|+|++.
T Consensus 28 ~~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I-~-~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s 103 (104)
T d1jmta_ 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-C-DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-C-CSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred chHHhhhhhhhhhHHHHHHHhccCCCEEEEEe-e-cCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence 56889999999999999999999999999875 4 446899999999999999999999987 999999999999873
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.5e-10 Score=115.78 Aligned_cols=81 Identities=19% Similarity=0.373 Sum_probs=73.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||||||+++|+++|+++|++||.|.++.+ +++..+|+++|||||+|.+.+++.+|+..++..++++.+.+....
T Consensus 5 ~~r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~-~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 83 (183)
T d1u1qa_ 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 83 (183)
T ss_dssp HHHEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHcCCEEEEEe-eecccCCCccCceecccCCHHHHHHHHHhcCCcccccchhhhhhh
Confidence 3489999999999999999999999999999875 567888999999999999999999999999999999998887665
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
++
T Consensus 84 ~~ 85 (183)
T d1u1qa_ 84 SR 85 (183)
T ss_dssp CT
T ss_pred hc
Confidence 44
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=8.5e-10 Score=102.82 Aligned_cols=98 Identities=7% Similarity=-0.031 Sum_probs=70.0
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
|++++|+..|.++|+.+|.++.+|..++..+.++ +++++|...|++++..+|++...|+.++.++...|++++|+..|
T Consensus 17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~ 94 (117)
T d1elwa_ 17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTY 94 (117)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcchhhhhccccccccc--ccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHH
Confidence 6677777777777777777777777777777664 56777777777777777777777777777777777777777777
Q ss_pred HHHHhccCCCHHHHHHHHHH
Q 001064 157 ERAVQGVTYSVDIWLHYCIF 176 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~ 176 (1167)
+++++..|.+.++|..+.++
T Consensus 95 ~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 95 EEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777666554
|
| >d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: mRNA transport regulator MTR2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=2.6e-10 Score=106.88 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=69.5
Q ss_pred chhHhHHHHHHHHhhh----cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCC-Cc
Q 001064 719 AQVGSYFVGQYYQVLQ----QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWN-GG 793 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~----~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~-~~ 793 (1167)
.+|+..||++||..|+ +.+..|..||.+.++.+.|||+.+.+...+ |.+++..||-+.++|+++|||++++ ++
T Consensus 3 ~qi~~~FvK~~ya~LD~~dpn~~~ql~~ly~p~~S~Iv~NGnpvag~~~~--lekf~~~lP~T~H~l~s~DcqpIpG~gT 80 (165)
T d1of5b_ 3 AQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNATPFAQATVF--LQMWQNQVVQTQHALTGVDYHAIPGSGT 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETTEEESCHHHH--HHHHHHHSCCCEEEEEEEEEEEETTTTE
T ss_pred HHHHHHHHHHHHHHhcccChhHHHHHHhhcCCCCceEEECCCCcCcHHHH--HHHHHhcCCCeeEEEEEEeeeEcCCCcE
Confidence 4799999999999999 445557888998777778999998876554 3447778999999999999999875 45
Q ss_pred eEEEEEEEEEecCccccceeEEEEEE
Q 001064 794 VLVMVSGSVKTKEFCRRRKFVQTFFL 819 (1167)
Q Consensus 794 i~v~v~G~~~~~~~~~~~~F~q~F~L 819 (1167)
++|.|+|.|.+++. -.-+--|.+.|
T Consensus 81 ~vi~~sgkVrfDes-gr~k~G~~~~~ 105 (165)
T d1of5b_ 81 LICNVNCKVRFDES-GRDKMGQDATV 105 (165)
T ss_dssp EEEEEEEEEECC--------------
T ss_pred EEEEEeeEEEECCC-CCCCCCCcccc
Confidence 77889999999876 45666777777
|
| >d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3.1e-10 Score=104.67 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=57.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCH-HHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI-SGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~-~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..+||||||.++|+++|+++|++||+|.+|+| + +++|||||.|.+. ++|..|+.. ++..+.++.+.|...
T Consensus 12 ~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i-~------~~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~ 83 (113)
T d1owxa_ 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-V------RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 83 (113)
T ss_dssp EEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-C------TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred eEEEECCCCCCCCHHHHHHHHHhcCChheEEE-e------cCCceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEe
Confidence 45699999999999999999999999999875 2 2478999999985 678777766 777777776666543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=5.4e-09 Score=106.49 Aligned_cols=129 Identities=10% Similarity=-0.002 Sum_probs=65.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001064 398 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 477 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 477 (1167)
+...|+++.|+..|.++ . +.++.+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++.++|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i---~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kA-l~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV---Q-DPHSRICFNIGCMYTILKNMTEAEKAFTRS-INRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS---S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc---C-CCCHHHHHHHHHHHHHcCCchhHHHHHHHH-HHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 33444555555444432 1 233445555555555555555555555554 445555555555555555555555555
Q ss_pred HHHHHHHHHhhhCCCc----------cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 478 FSLYEQAIAIEKGKEH----------SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 478 ~~~~~kAl~~~~~~~~----------~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+..|++|+...+.+.. ......++..++.++.. .|++++|...|++|+++.|..
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~-~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCc
Confidence 5555555544322110 01113455556655444 677777777777777766654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=6.5e-09 Score=102.36 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
....+..+.+.|++++|+.+|++++..+|.+..+|..++.++...|++++|+..|++++++. |++..+|..++.++...
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 33445555688999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
|++++|...|+++ +.++|++..++..+..+.
T Consensus 92 g~~~eA~~~~~~a-~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 92 GKFRAALRDYETV-VKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp TCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 9999999999998 788999999887766553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=2.6e-08 Score=108.51 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----Ch
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACA------NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LP 423 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p------~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~ 423 (1167)
+.|...+.++...+++++|+..|++|+.++. .....|..++.++...|++++|...|++++.+.... ..
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 3455666777889999999999999999742 123589999999999999999999999999987322 14
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcC---C---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-C
Q 001064 424 EIHLFAARFKEQ-NGDIDGARAAYQLVHTETS---P---GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-Q 495 (1167)
Q Consensus 424 ~l~~~~a~~~e~-~g~~~~A~~~~~~a~~~~~---P---~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~-~ 495 (1167)
.++...+.+++. .|++++|...|+++ +++. . ....++..++.++..+|++++|+.+|++++...+..... .
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A-~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELA-GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHH-HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence 566666766655 69999999999998 4332 1 234568999999999999999999999999987653221 1
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 496 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 496 ~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
....++...+... ...|+++.|...|+++++.+|..
T Consensus 197 ~~~~~~~~~~~~~-l~~~d~~~A~~~~~~~~~~~~~~ 232 (290)
T d1qqea_ 197 SLKDYFLKKGLCQ-LAATDAVAAARTLQEGQSEDPNF 232 (290)
T ss_dssp GHHHHHHHHHHHH-HHTTCHHHHHHHHHGGGCC----
T ss_pred hHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCc
Confidence 2233444545443 34899999999999999988753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.8e-08 Score=99.16 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=90.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 181 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~ 181 (1167)
..|..+.+ .+++++|+..|+++|+.+|++..+|..++.+++..|++++|+..|+++|+..|.+...|..++..+. ..
T Consensus 15 ~~gn~~~~--~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~-~~ 91 (159)
T d1a17a_ 15 TQANDYFK--AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-AL 91 (159)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHH--cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH-Hc
Confidence 45666655 4789999999999999999999999999999999999999999999999999999999999999888 78
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001064 182 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 182 ~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~ 213 (1167)
|++++|...|++++...|.+ ..++..+..
T Consensus 92 g~~~eA~~~~~~a~~~~p~~---~~~~~~l~~ 120 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHD---KDAKMKYQE 120 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTC---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCC---HHHHHHHHH
Confidence 99999999999999966554 555555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=8.8e-09 Score=104.91 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
+.+|.. +..+...|+++.|+..|+++ .+.++.+|+.+|.++...|++++|...|++|+++. |+++.+|..++.++
T Consensus 6 ~~l~~~-g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 6 ISLWNE-GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHH-HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence 357876 66667889999999999874 46788999999999999999999999999999988 89999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCCh
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGL 457 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~ 457 (1167)
.+.|++++|+..|+++ +...+.+
T Consensus 81 ~~~g~~~~A~~~~~kA-l~~~~~n 103 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEA-LIQLRGN 103 (192)
T ss_dssp HHTTCHHHHHHHHHHH-HHTTTTC
T ss_pred HhhccHHHHHHHHHHH-HHhCccC
Confidence 9999999999999998 5555543
|
| >d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Alkylation repair AlkB homolog 8, ALKBH8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=7.6e-10 Score=99.58 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=53.8
Q ss_pred CccEEEEec--CCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001064 1030 EVKSVYVRN--LPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1099 (1167)
Q Consensus 1030 ~~~~l~V~n--lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~ 1099 (1167)
+.++|||+| ||.++|+++|+++|++||.|+.+.+ + +.+|||||+|.+.++|.+|+.. +|..|.
T Consensus 17 pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~-~------~~k~~aFV~f~~~e~A~~A~~~lng~~i~ 82 (101)
T d2cq2a1 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-P------PNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (101)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC-C------TTCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEee-c------cCccEEEEEECCHHHHHHHHHHhCCCCCC
Confidence 457888855 9999999999999999999998653 2 2468999999999999999977 888774
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=1.2e-08 Score=111.21 Aligned_cols=212 Identities=11% Similarity=0.054 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----- 387 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld-~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~----- 387 (1167)
+......+|...+++++|+..|++++.- +..-.+ +.-...|...+.++.+.|++++|+..|++++...+..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~---~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 115 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADY---QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence 4444577899999999999999999871 111122 2334678999999999999999999999999885544
Q ss_pred -HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH--
Q 001064 388 -PEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-- 458 (1167)
Q Consensus 388 -~~~w~~ya~~l~~-~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-- 458 (1167)
..++..++..+.. .|++++|+..|++|++++... ...++..++.++...|++++|..+|+++ +.+.+.+.
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~-~~~~~~~~~~ 194 (290)
T d1qqea_ 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL-IKSSMGNRLS 194 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTSSCTTT
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH-HHhCccchhh
Confidence 3578888877765 599999999999999876432 3456788899999999999999999998 55555432
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhcC
Q 001064 459 -----EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL-VSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 459 -----~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~-~~g~~~~Ar~i~~kal~~~p 530 (1167)
..++..+.++...|+++.|...|+++++.+|.-..+.. ..+...++..... ..+.+++|...|.++++++|
T Consensus 195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre-~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 34667777777889999999999999998764211111 1233444333111 02347888888877776654
|
| >d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor MEX67 {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-like domain of mRNA export factor MEX67 species: Yeast (Candida albicans) [TaxId: 5476]
Probab=98.90 E-value=3.4e-09 Score=106.13 Aligned_cols=117 Identities=16% Similarity=0.242 Sum_probs=87.7
Q ss_pred hhHhHHHHHHHHhhhcCcccccccccCCceEEE-EcCC-----------------------------ccc--------ch
Q 001064 720 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR-VDGD-----------------------------STE--------SA 761 (1167)
Q Consensus 720 ~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~-~~g~-----------------------------~~~--------~~ 761 (1167)
.|+..||++||+.+|++|..|..+|+++|.+.. .+.. .+. -.
T Consensus 3 ~i~~~Fl~~yf~~yDsdR~~Ll~~Y~~~s~FSlsv~~~~p~~~~~~~~~~~~~~~~~~Y~k~SRNL~ki~~~~~r~~~L~ 82 (205)
T d1q40b_ 3 NLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMAKLS 82 (205)
T ss_dssp HHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHHTCE
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHhcCCCCEEEEEccCCCccccccccccccCCcchhhHhhhcccccccCCHHHHHHHHh
Confidence 478999999999999999999999999998763 2210 000 02
Q ss_pred hchHHHHHHHhcCCCcceeE------eeeeccccC-CCceEEEEEEEEEecC----------------------------
Q 001064 762 SSMLDIHSLVISLNFTAIEI------KTINSLGSW-NGGVLVMVSGSVKTKE---------------------------- 806 (1167)
Q Consensus 762 ~~~~~i~~~~~~l~~~~~~i------~~~d~q~~~-~~~i~v~v~G~~~~~~---------------------------- 806 (1167)
.|.++|.+.|.+||-+++.+ -+|||.+.. .++++|+|+|.+.--+
T Consensus 83 ~G~~~Iv~~l~~LPkT~Hdl~s~~~~f~vD~~~~~~~~~l~itVhG~F~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (205)
T d1q40b_ 83 IGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGPKHK 162 (205)
T ss_dssp EHHHHHHHHHHTSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSSSSSCCC
T ss_pred hCHHHHHHHHHHCCCCcccccCCCceEEEEeEecCCCCEEEEEEEeEEEeccCccccccccccccccccccccccccccc
Confidence 47789999999999887754 278886532 3689999999985310
Q ss_pred --ccccceeEEEEEEeeeC-CeEEEEcceEEec
Q 001064 807 --FCRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 836 (1167)
Q Consensus 807 --~~~~~~F~q~F~L~~~~-~~y~v~nd~fr~~ 836 (1167)
....|.|.-||+|.|.+ +++.|.||+|-.-
T Consensus 163 ~~~~~~RsF~RTFil~P~~~g~~~I~nD~L~IR 195 (205)
T d1q40b_ 163 RIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIR 195 (205)
T ss_dssp CCCCCCEEEEEEEEEECC---CCEEEEEEEEEE
T ss_pred cccccccceeEEEEEEecCCCcEEEEcCeEEEe
Confidence 01257899999999986 5799999999543
|
| >d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: HIV Tat-specific factor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2e-09 Score=96.38 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=64.6
Q ss_pred CccEEEEecC--CCCCC---------HHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001064 1030 EVKSVYVRNL--PSTVT---------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1097 (1167)
Q Consensus 1030 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~ 1097 (1167)
.++.|+|+|+ |.++. .++|++.|++||.|..|.+ .. ++++||+||+|++.++|.+|+.. ||..
T Consensus 7 ~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~--~~---~~~~G~~fV~f~~~e~A~~A~~~lng~~ 81 (99)
T d2dita1 7 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL--FD---RHPDGVASVSFRDPEEADYCIQTLDGRW 81 (99)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE--ET---TCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEec--cC---CCCccEEEEEECCHHHHHHHHHHhCCcE
Confidence 4699999999 54321 2688999999999998653 22 24679999999999999999987 8999
Q ss_pred eeCcEeEEEeccCCC
Q 001064 1098 LAGRQVYIEERRPNT 1112 (1167)
Q Consensus 1098 i~g~~l~V~~~r~~~ 1112 (1167)
|+||.|+|++..++.
T Consensus 82 ~~gr~i~v~~~~g~~ 96 (99)
T d2dita1 82 FGGRQITAQAWDGTT 96 (99)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCEEEEEEEeCCcC
Confidence 999999999987653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=9e-10 Score=130.10 Aligned_cols=102 Identities=7% Similarity=-0.010 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 001064 323 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 402 (1167)
Q Consensus 323 ~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g 402 (1167)
.+.+++..++..|.+++. +++ ...+..+++.+...+++++|+..|++|+...|.+...|..+|.++...|
T Consensus 131 ~~~~~~~~A~~~~~~al~--------~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 131 NKQTHTSAIVKPQSSSCS--------YIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp ------------CCHHHH--------HHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHhC--------CCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 334444555555555554 222 2457777787778888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH
Q 001064 403 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 435 (1167)
Q Consensus 403 ~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~ 435 (1167)
+..+|...|.||+.+. +.++..+..+..++.+
T Consensus 201 ~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 201 DHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 8888888888888776 5677777777665554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=2.4e-09 Score=109.47 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 437 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g 437 (1167)
...+..+.+.|++++|+..|+++|..+|.++.+|..+|.++...|++++|+..|++|+++. |++...|+.+|.++...|
T Consensus 8 ~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~l~ 86 (201)
T d2c2la1 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 3444444555666666666666666666666666666666666666666666666666554 555566666666666666
Q ss_pred CHHHHHHHHHHHhhhcCC
Q 001064 438 DIDGARAAYQLVHTETSP 455 (1167)
Q Consensus 438 ~~~~A~~~~~~a~~~~~P 455 (1167)
++++|+..|+++ ++++|
T Consensus 87 ~~~~A~~~~~~a-l~l~p 103 (201)
T d2c2la1 87 SYDEAIANLQRA-YSLAK 103 (201)
T ss_dssp CHHHHHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHH-HHhCc
Confidence 666666666655 34444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.1e-09 Score=126.82 Aligned_cols=139 Identities=7% Similarity=-0.076 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001064 321 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 321 ~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~ 400 (1167)
++...+.|..++..|.+++. +++.....|..++..+.+.++.+.|...|++++..++. .+++.++.++..
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~--------l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~ 164 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFN--------VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARY 164 (497)
T ss_dssp HHHHHHHHHHHHHHHTC---------------------------------------CCHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC--------CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHH
Confidence 34445667777777877776 67777888999998888999999999999999987653 688999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 401 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
.+++++|+..|.+|+.+. |++...|..+|.++...|+..+|...|.++ +.+.|....++..+..+..+.
T Consensus 165 ~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra-l~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 165 RNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRS-IAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHH-HSSSBCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988 899999999999999999999999999999 788999999988887665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.84 E-value=8.8e-09 Score=94.87 Aligned_cols=95 Identities=8% Similarity=-0.029 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 177 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~ 177 (1167)
+.|+.++..+.+ .|++.+|...|+++|..+|++..+|..++.++.+.+++++|+..|+++|..+|.+.+.|+.++..+
T Consensus 17 ~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 17 ENPMEEGLSMLK--LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 94 (112)
T ss_dssp SCHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence 345666666665 367888888888888888888888888888888888888888888888888888888888887777
Q ss_pred HhhcCCHHHHHHHHHHHH
Q 001064 178 INTYGDPETIRRLFERGL 195 (1167)
Q Consensus 178 ~~~~~~~~~Ar~~feral 195 (1167)
. ..|+.++|.+.|+|.|
T Consensus 95 ~-~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 T-NEHNANAALASLRAWL 111 (112)
T ss_dssp H-HHHHHHHHHHHHHHHH
T ss_pred H-HCCCHHHHHHHHHHHh
Confidence 7 5677788888777765
|
| >d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-like domain of mRNA export factor MEX67 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=6.1e-09 Score=105.03 Aligned_cols=117 Identities=15% Similarity=0.296 Sum_probs=89.7
Q ss_pred chhHhHHHHHHHHhhhcCcccccccccCCceEEE-EcCC------c--------------------cc--------chhc
Q 001064 719 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR-VDGD------S--------------------TE--------SASS 763 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~-~~g~------~--------------------~~--------~~~~ 763 (1167)
.+++..||++||+.+|++|..|..+|+++|.+.. .+-. . +. -..|
T Consensus 11 ~~lv~~FL~~Yf~~yDsdR~~Ll~~Y~~~A~FSlsv~~~~p~~~~~~~~~~~~~~~Y~k~SRNL~ki~~~~~r~~~L~~G 90 (221)
T d1of5a_ 11 GQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLSIG 90 (221)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC--------------------------------------CBH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhcCcCCEEEEEecCCCCCccccCccCCcchHHHHhhcccccccCCHHHHHHHHhhC
Confidence 3689999999999999999999999999988753 2210 0 00 1247
Q ss_pred hHHHHHHHhcCCCcceeEe------eeecccc-CCCceEEEEEEEEEecCc-----------------------------
Q 001064 764 MLDIHSLVISLNFTAIEIK------TINSLGS-WNGGVLVMVSGSVKTKEF----------------------------- 807 (1167)
Q Consensus 764 ~~~i~~~~~~l~~~~~~i~------~~d~q~~-~~~~i~v~v~G~~~~~~~----------------------------- 807 (1167)
.++|.+.|.+||-+++.|. +|||.+. ..++++|+|+|.+.--+.
T Consensus 91 ~~~Iv~~l~~LPkT~Hdl~~~p~~f~vd~~~~~~~~~l~itvhG~F~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (221)
T d1of5a_ 91 QESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSN 170 (221)
T ss_dssp HHHHHHHHHHSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-----------------------------CC
T ss_pred HHHHHHHHHHCCCccccccCCCceEEEEEEEcCCCCEEEEEEeEEEEeccCccccccccccccccccccccccccccccc
Confidence 7899999999998888652 6887543 235799999999964211
Q ss_pred --cccceeEEEEEEeeeCCeEEEEcceEEe
Q 001064 808 --CRRRKFVQTFFLAPQEKGYFVLNDIFHF 835 (1167)
Q Consensus 808 --~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 835 (1167)
...|.|.-||+|.|.++++.|.||+|-.
T Consensus 171 ~~~~~RsFdRTFil~P~~~g~~I~nD~L~i 200 (221)
T d1of5a_ 171 NKLSKKSFDRTWVIVPMNNSVIIASDLLTV 200 (221)
T ss_dssp SCCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccccccceeEEEEEecCCCcEEEEeCeEEE
Confidence 1257899999999999999999999944
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.80 E-value=1.4e-08 Score=93.48 Aligned_cols=94 Identities=16% Similarity=0.033 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
..|...+..+.+.|++++|+..|++++..+|.++.+|..++.++...|++++|+..|++++++. |++..+|+.++.++.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 4567777777778888888888888888888888888888888888888888888888888876 777888888888888
Q ss_pred HcCCHHHHHHHHHHH
Q 001064 435 QNGDIDGARAAYQLV 449 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a 449 (1167)
..|++++|.+.|++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888887775
|
| >d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein, TAP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: NTF2-like domain of Tip associating protein, TAP species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.3e-08 Score=100.91 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=87.9
Q ss_pred hhHhHHHHHHHHhhhc-CcccccccccCCceEEEE-cCC----c----------------cc--------chhchHHHHH
Q 001064 720 QVGSYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRV-DGD----S----------------TE--------SASSMLDIHS 769 (1167)
Q Consensus 720 ~vg~~Fv~~YY~~l~~-~p~~l~~fY~~~s~~~~~-~g~----~----------------~~--------~~~~~~~i~~ 769 (1167)
.+...|+.+||+.+|+ +|..|..+|+++|.+..- +.. . .. -..|.++|.+
T Consensus 16 ~lv~~Fl~~yf~~yDs~dR~~Ll~~Y~~~a~FSlsv~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~r~~~l~~G~~~Iv~ 95 (186)
T d1jkgb_ 16 SLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVA 95 (186)
T ss_dssp HHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHhcCcccEEEEecCCCCCCCCccchHHHhhhCcCccccCCHHHHHHHHhhCHHHHHH
Confidence 5889999999999997 899999999999877631 110 0 00 1136789999
Q ss_pred HHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEecCc---cccceeEEEEEEeeeC-CeEEEEcceEEec
Q 001064 770 LVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTKEF---CRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 836 (1167)
Q Consensus 770 ~~~~l~~~~~~i~--~~d~q~~~~~~i~v~v~G~~~~~~~---~~~~~F~q~F~L~~~~-~~y~v~nd~fr~~ 836 (1167)
.|.+||-+++.+. .+|..--...+++|+|+|.+.-.+. ...|.|+-||+|.|.+ ++|.|.||.|-.-
T Consensus 96 ~l~~LP~T~Hd~~sf~vD~~~~~~~~l~itV~G~F~E~~~~~~~~~rsF~RTFil~P~~~~~~~I~nD~L~Ir 168 (186)
T d1jkgb_ 96 FLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVR 168 (186)
T ss_dssp HHTTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEE
T ss_pred HHHHCCCceecccccceeEeeccCCEEEEEEeeEEEecCCCCCcceeEEEEEEEEeecCCCceEEEecEEEEE
Confidence 9999998877544 3554333345799999999875321 2368899999999976 6899999999544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=2.7e-08 Score=101.37 Aligned_cols=102 Identities=10% Similarity=0.030 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
+.+.....|..+.+ .|++++|+..|+++|..+|.+..+|..++.++.+.|++++|+..|+++|.+.|.++..|+.++.
T Consensus 3 ~a~~l~~~Gn~~~~--~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFV--GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 34566778888877 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.+. ..|++++|...|++++...|.
T Consensus 81 ~~~-~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 81 CQL-EMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HCCCHHHHHHHHHHHHHhCcc
Confidence 998 789999999999999987654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.5e-07 Score=91.81 Aligned_cols=130 Identities=8% Similarity=-0.000 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...++..+..+.+.|++++|+..|++||..++.....+......+. .....+|..+|.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~nla~~y 72 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQ--------------------ALRLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHH--------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhc--------------------hhHHHHHHHHHHHH
Confidence 5566777777778899999999999999887755443222111100 00123566678888
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
.+.|++++|...++++ ++++|++..+|+..+.++..+|++++|+..|++++++.|++ +.+...++.+..+
T Consensus 73 ~k~~~~~~A~~~~~~a-l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKA-LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQR 142 (170)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhh-hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 8899999999999998 78899999999999999999999999999999999998643 5566566555433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.6e-07 Score=91.69 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
.+|..++.++.+.|++++|...+++++.+. |+++.+|+..|.++...|++++|+..|+++ ++++|++..+...+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a-l~l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKV-LQLYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Confidence 467888999999999999999999999987 899999999999999999999999999998 789999999887777776
Q ss_pred HHcCCH
Q 001064 469 RRLGNL 474 (1167)
Q Consensus 469 ~r~g~~ 474 (1167)
.+....
T Consensus 141 ~~~~~~ 146 (170)
T d1p5qa1 141 QRIRRQ 146 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.65 E-value=6.5e-08 Score=93.36 Aligned_cols=103 Identities=12% Similarity=-0.021 Sum_probs=82.6
Q ss_pred cccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001064 73 LVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 144 (1167)
Q Consensus 73 ~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~--------~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~ 144 (1167)
+...+.+++|+..|+++++.+|+|.++|+.++..+..+. .+.+++|+..|+++|+++|++..+|..++.++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 333356789999999999999999999999998875321 256688999999999999999999999999887
Q ss_pred HhC-----------CHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 145 RVG-----------SMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 145 ~~~-----------~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
.+| ++++|.+.|+++|.+.|.+...|..+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~ 128 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 128 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence 654 3688999999999999988766654433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=6.6e-08 Score=90.18 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=85.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhh-ccChHHHHHHHHHHHHc
Q 001064 361 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG---SMDLAHNALARATHVFV-KRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 361 ~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g---~~e~A~~vl~rA~~~~~-p~~~~l~~~~a~~~e~~ 436 (1167)
+..+...+++++|...|+++|..+|.++++++.||.+|...+ ++++|+.+|++++...+ +....+|+.+|..+.+.
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~ 85 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 344456678899999999999999999999999999886544 45579999999887652 22345888889999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
|++++|+..|+++ ++++|++..+......++.+
T Consensus 86 g~~~~A~~~~~~a-L~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 86 KEYEKALKYVRGL-LQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp TCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHH
Confidence 9999999999998 78899988877665555433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.62 E-value=3.5e-07 Score=90.51 Aligned_cols=147 Identities=10% Similarity=-0.001 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...++.-+..+.+.|++..|+..|++||..++....+...... . . . +....++..++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~----------~---~-~------~~~~~~~~Nla~~~ 74 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESK----------A---S-E------SFLLAAFLNLAMCY 74 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHH----------H---H-H------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhh----------h---c-c------hhHHHHHHhHHHHH
Confidence 4566666766677777777777777777664432211100000 0 0 0 11123555667777
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
...|++++|+..++++ ++++|++..+|+.++.++..+|++++|+..|++++.++|++ +.++..+..+......
T Consensus 75 ~~l~~~~~Ai~~~~~a-l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 75 LKLREYTKAVECCDKA-LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQIFMCQKKAKE 147 (168)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHHH
T ss_pred HHhhhcccchhhhhhh-hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHh
Confidence 7788888888888887 67788888888888888888888888888888888777543 4455555544433222
Q ss_pred CHHHHHHHHHHHHh
Q 001064 514 NAEKARQILVDSLD 527 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~ 527 (1167)
..+..+++|.+.++
T Consensus 148 ~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 148 HNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 22344455444443
|
| >d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.3e-08 Score=90.29 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=63.7
Q ss_pred CccEEEEecC--CCCCC--------HHHHHHHHhcCCCceeeeEeeecCC--CcccccEEEEEECCHHHHHHHHHh-CCC
Q 001064 1030 EVKSVYVRNL--PSTVT--------AFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGVQNAIQA-SPI 1096 (1167)
Q Consensus 1030 ~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~--~g~~kg~afV~F~~~~~a~~Al~~-~~~ 1096 (1167)
+.+.|.|+|+ +.++. .++|++.|++||.|++|.| .++.. .....|++||+|.+.++|.+|+.. +|.
T Consensus 3 Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I-~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr 81 (104)
T d1o0pa_ 3 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI-PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 81 (104)
T ss_dssp CCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEEC-CCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSC
T ss_pred CCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEE-eecCCCCccCCceEEEEEECCHHHHHHHHHHHCCC
Confidence 4588999999 54442 3578999999999999865 33332 234568999999999999999987 899
Q ss_pred eeeCcEeEEEecc
Q 001064 1097 QLAGRQVYIEERR 1109 (1167)
Q Consensus 1097 ~i~g~~l~V~~~r 1109 (1167)
.++||.|.|.+..
T Consensus 82 ~f~gR~v~v~f~~ 94 (104)
T d1o0pa_ 82 KFANRVVVTKYCD 94 (104)
T ss_dssp CSSSSCCEEEEEC
T ss_pred EECCeEEEEEEcC
Confidence 9999999999865
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.56 E-value=3.3e-07 Score=89.12 Aligned_cols=115 Identities=16% Similarity=0.073 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
|+.-+.-+.+.|++.+|+..|++||..++...... +.......+.+. ..++...|.++.+.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~~------~~~~~Nla~~~~~l 80 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNIE------ISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhhHH------HHHHhhHHHHHHHh
Confidence 45555555678999999999999998866433210 000000111111 13556677777788
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
|++++|+..|+++ ++++|++..+|+..+.++..+|++++|+..|+++++++|++
T Consensus 81 ~~~~~Al~~~~~a-l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 81 KDYPKAIDHASKV-LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp TCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred cccchhhhhhhcc-ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8888888888887 67788888888888888888888888888888888887643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.55 E-value=7.2e-07 Score=88.18 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
..++..++.++...|++++|+..+++++.+. |++...|+..+.++...|++++|+..|+++ +.++|++..++..+..+
T Consensus 64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a-l~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV-LEVNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHSCTTCHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHH
Confidence 3467788999999999999999999999987 899999999999999999999999999998 79999999998887777
Q ss_pred HHHcCCH-HHHHHHHHHHHHh
Q 001064 468 ERRLGNL-EDAFSLYEQAIAI 487 (1167)
Q Consensus 468 e~r~g~~-e~A~~~~~kAl~~ 487 (1167)
..+.+.. +....+|.+.++.
T Consensus 142 ~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhh
Confidence 6555443 2344455444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=9.3e-08 Score=89.12 Aligned_cols=92 Identities=14% Similarity=-0.013 Sum_probs=43.8
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEFPLC--YGYWKKYADHEARVGSMDKVVE 154 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~-~~~~~~ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~~~~e~A~~ 154 (1167)
+++++++.|+++|+.+|.+.++++.|+..+.+.. .+++.+|+.+|+++|...|.+ ..+|+.+|..+.+.|++++|++
T Consensus 14 ~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~ 93 (122)
T d1nzna_ 14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4444555555555555555555555554443210 133444555555555544433 2245555555555555555555
Q ss_pred HHHHHHhccCCCHHH
Q 001064 155 VYERAVQGVTYSVDI 169 (1167)
Q Consensus 155 l~eraL~~~P~s~~l 169 (1167)
.|+++|.+.|.+...
T Consensus 94 ~~~~aL~~~P~~~~A 108 (122)
T d1nzna_ 94 YVRGLLQTEPQNNQA 108 (122)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHHhCcCCHHH
Confidence 555555555554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.54 E-value=6e-07 Score=88.80 Aligned_cols=132 Identities=9% Similarity=-0.013 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001064 316 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 395 (1167)
Q Consensus 316 ~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya 395 (1167)
..+...+...+++.+|+..|.++|+ +. ... .......+.+...|....+|..++
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~--------~~-----------~~~-------~~~~~~~~~~~~~~~~~~~~~nla 84 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLR--------YV-----------EGS-------RAAAEDADGAKLQPVALSCVLNIG 84 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------HH-----------HHH-------HHHSCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--------hh-----------hhh-------hhhhhhHHHHHhChhhHHHHHHHH
Confidence 3445567778899999999998875 10 000 011111222333455566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 475 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 475 (1167)
.++.+.|++++|+..|.+++++. |+++.+|+..|..+...|++++|+..|+++ ++++|++..++..+..+..+.....
T Consensus 85 ~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a-l~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 85 ACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKA-QEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888888776 677788888888888888888888888887 6778888777776666665544433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.50 E-value=1.3e-07 Score=91.08 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=77.9
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS----------GSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~----------g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
++.+.+++|+..|++++..+|+++++|+.++.++... +.+++|+..|++|+++. |+++.+|+.++.++.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 4566789999999999999999999999999887643 34577888888888877 788888888887776
Q ss_pred HcC-----------CHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001064 435 QNG-----------DIDGARAAYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 435 ~~g-----------~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
..| ++++|...|+++ ++++|++...+..+...
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~ka-l~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQA-VDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcc-cccCCCHHHHHHHHHHH
Confidence 544 356777777777 67788777666554433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.50 E-value=9.5e-07 Score=87.29 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
....+..+...|++++|+..|.+||...+.. ..... ....+.+. |....+|..+|.++.+.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~-----------~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-----------RAAAE-------DADGAKLQ-PVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHHSC-------HHHHGGGH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh-----------hhhhh-------hHHHHHhC-hhhHHHHHHHHHHHHhh
Confidence 3444555567789999999999998652211 01111 11222233 55677888899999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
|++++|+..|+++ ++++|++..+|+.++.++.++|++++|+..|++++++.|++ +.++..+..+..+
T Consensus 91 ~~~~~Ai~~~~~a-l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n------~~~~~~l~~~~~~ 157 (169)
T d1ihga1 91 SDWQGAVDSCLEA-LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQK 157 (169)
T ss_dssp TCHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred cccchhhhhhhhh-hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 9999999999998 89999999999999999999999999999999999998753 5566666655433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=8.5e-07 Score=83.27 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHHHHHH
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPMLYAQY 504 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~-~~~~~l~~~~ 504 (1167)
+...+..+.+.|++++|+..|.++ ++++|++..+|..++.++.++|++++|+..|+++|++.|..... .....+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~a-l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKA-KELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 345677778899999999999998 78999999999999999999999999999999999998754321 1223467778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 505 SRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 505 a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+..+.. .+++++|..+|++++..+++.
T Consensus 86 g~~~~~-~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 86 GNSYFK-EEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHH-hCCHHHHHHHHHHHHhcCCCH
Confidence 888766 999999999999999887753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.44 E-value=2.1e-06 Score=83.21 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 392 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 392 ~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
..-|.-+...|++++|+..|.+|+.+++ ..... .+.......+. -...++..++.++.++
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~-~~~~~-------------~~~~~~~~~~~------~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEW-------------DDQILLDKKKN------IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTC-------------CCHHHHHHHHH------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-chhhh-------------hhHHHHHhhhh------HHHHHHhhHHHHHHHh
Confidence 3344445567888888888888887663 21100 00000001111 0234677788888899
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHH
Q 001064 472 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR 519 (1167)
Q Consensus 472 g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar 519 (1167)
|++++|+..|+++|+++|.+ ...|...|..++. .|++++|+
T Consensus 81 ~~~~~Al~~~~~al~~~p~~------~ka~~~~g~~~~~-lg~~~~A~ 121 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNN------VKALYKLGVANMY-FGFLEEAK 121 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH-HTCHHHHH
T ss_pred cccchhhhhhhccccccchh------hhhhHHhHHHHHH-cCCHHHHH
Confidence 99999999999999998643 5678888888776 88888775
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2.3e-06 Score=80.17 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH-------HHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE-------IHL 427 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~-------l~~ 427 (1167)
..++..+..+...|++++|+..|+++|..+|.+..+|..++.++...|++++|+..+++++++. |++.. +|+
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3477788878889999999999999999999999999999999999999999999999999987 55544 444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSP 455 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P 455 (1167)
..+..+...+++++|+..|+++ +..++
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~ka-l~~~~ 110 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKS-LAEHR 110 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-HHHCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-HhcCC
Confidence 4555566666666777666665 33344
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.24 E-value=0.00029 Score=74.01 Aligned_cols=62 Identities=3% Similarity=0.001 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHH
Q 001064 133 YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN---TYGDPETIRRLFERGLA 196 (1167)
Q Consensus 133 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~---~~~~~~~Ar~~feral~ 196 (1167)
+..|+.++..+.+.+++++|++.|+++.+. .+.+.++.++.++.. ...++..++..|+++..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 445555555555555555566656555543 345555555555442 12345555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.22 E-value=1.1e-06 Score=93.30 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=105.7
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
.+.|++++|+..|+++++.+|.+.++|..++.++...|++++|+..|++++++. |+....+..++.++...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHH
Confidence 357999999999999999999999999999999999999999999999999988 8889999999888876666655554
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
.+.+......|.....++..+....+.|+.++|..+++++++..|.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4443323335666667777888888999999999999999999875
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.22 E-value=0.00011 Score=77.26 Aligned_cols=95 Identities=6% Similarity=-0.008 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
|.++|+.|+..+.. ++++.+|.+.|+++.+. .+...+..++.++.. ..++.+|...|+++... .+...+.
T Consensus 1 ~p~~~~~lG~~~~~--~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYK--EKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhh
Confidence 67899999998887 58999999999999875 578999999999987 67899999999999875 4666666
Q ss_pred HHHHHHHh---hcCCHHHHHHHHHHHHH
Q 001064 172 HYCIFAIN---TYGDPETIRRLFERGLA 196 (1167)
Q Consensus 172 ~ya~~~~~---~~~~~~~Ar~~feral~ 196 (1167)
.++.+... ...+.+.|...|++++.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~ 102 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACD 102 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhh
Confidence 66555542 13456777777777765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.11 E-value=2.5e-05 Score=77.50 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY 197 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~ 197 (1167)
.+|..++..+.+.|++++|+..++++|..+|.+..+|..++..+. ..|+.++|++.|+++...
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~-~~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKTT 130 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999999888 789999999999988653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.9e-05 Score=69.46 Aligned_cols=87 Identities=15% Similarity=-0.003 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHH
Q 001064 458 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
.+-++..+....+.|++++|+..|++|++..+.... ......++..+|..+++ .|++++|+..|+++|+++|++...+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHHH
Confidence 345677888889999999999999999999875432 23456788889998777 9999999999999999999999988
Q ss_pred HHHHHhHhh
Q 001064 537 EALIHFESI 545 (1167)
Q Consensus 537 ~~~~~~e~~ 545 (1167)
.++..++..
T Consensus 84 ~Nl~~~~~~ 92 (95)
T d1tjca_ 84 GNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.06 E-value=2.9e-06 Score=90.01 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=98.1
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 478 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 478 (1167)
...|++++|+..|+++++.. |++..++..++.++...|++++|+..|+++ ++++|++..++..++.+....+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a-~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS-IKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 35799999999999999988 899999999999999999999999999998 7889999999988888776554444433
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH
Q 001064 479 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 479 ~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~ 537 (1167)
..+.+..... .+.....+...+..... .|+.++|+.+++++++..|....+|.
T Consensus 85 ~~~~~~~~~~-----~p~~~~~~l~~a~~~~~-~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 85 QGAATAKVLG-----ENEELTKSLVSFNLSMV-SQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp TSCCCEECCC-----SCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHhhhhhccc-----CchHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 3222211111 12222333444555444 89999999999999999998876653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.9e-05 Score=69.38 Aligned_cols=81 Identities=7% Similarity=-0.065 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC-------YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD 168 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~-------~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~ 168 (1167)
..+.++.||..+.+ .+++.+|+..|+++|+++|.+ ..++..++..+.+.|++++|+..|+++|++.|.+.+
T Consensus 4 saddc~~lG~~~~~--~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYT--EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence 46778999999987 489999999999999987654 567888999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 001064 169 IWLHYCIFAI 178 (1167)
Q Consensus 169 lw~~ya~~~~ 178 (1167)
++..+..+..
T Consensus 82 a~~Nl~~~~~ 91 (95)
T d1tjca_ 82 ANGNLKYFEY 91 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888766544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.78 E-value=5e-05 Score=73.35 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=68.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc-----
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH----- 493 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~----- 493 (1167)
......|++++|+..|+++ +++.|+ ...+|..++..+..+|++++|...|+++|.+.+....
T Consensus 17 ~~~~~~g~y~~Ai~~y~~A-l~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRA-MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHH-HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHcCCHHHHHHHHHHH-HHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344455555555555555 343333 2346788888899999999999999999998753111
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 494 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 494 ~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
.+....++..+|..+.. .|++++|...|++|+++.|.
T Consensus 96 ~~~~~~a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 96 GKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence 11223356778888666 99999999999999987654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.78 E-value=0.00015 Score=69.80 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=65.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 361 LDFIERDGDFNKVVKLYERCLIACANYP------------EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 361 ~~~~e~~g~~~~a~~~yeral~~~p~~~------------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+......|++++|+..|+++|..++..+ .+|..++.++...|++++|...+++++.+++ +
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~-~------- 87 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN-R------- 87 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc-c-------
Confidence 3344456777777777777777766543 2455556666666666666666666655441 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
. ....++ ...+++.++.++..+|++++|+..|++|+++.+.
T Consensus 88 --------------------~-~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 88 --------------------R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp --------------------H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------c-ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 0 112222 2345677888899999999999999999998864
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.73 E-value=4.6e-05 Score=75.49 Aligned_cols=126 Identities=13% Similarity=-0.017 Sum_probs=96.5
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+|-..++.+...+.-....|+++.|+..|.++|...+...-.++....+.. .+...+. +....++..
T Consensus 6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~------------~~r~~l~-~~~~~a~~~ 72 (179)
T d2ff4a2 6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVE------------PFATALV-EDKVLAHTA 72 (179)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHH------------HHHHHHH-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHH------------HHHHHHH-HHHHHHHHH
Confidence 344556667777777788999999999999999987655432222221111 1111111 345678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
++..+...|++++|+..++++ ++++|.+..+|..++..+.+.|+..+|+..|+++....
T Consensus 73 la~~~~~~g~~~~Al~~~~~a-l~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L 131 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEAL-TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHH-HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 999999999999999999998 78999999999999999999999999999999986654
|
| >d1q42a_ d.17.4.2 (A:) mRNA transport regulator MTR2 {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: NTF2-like domain: mRNA transport regulator MTR2 species: Yeast (Candida albicans) [TaxId: 5476]
Probab=96.81 E-value=0.0011 Score=60.82 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=75.6
Q ss_pred CcchhHhHHHHHHHHhhh-cCccccccccc-------------CCceEEEEcCCcccc--h-hchHHHHHHHhcCCCcce
Q 001064 717 YPAQVGSYFVGQYYQVLQ-QQPDLVHQFYS-------------DASSMIRVDGDSTES--A-SSMLDIHSLVISLNFTAI 779 (1167)
Q Consensus 717 ~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~-------------~~s~~~~~~g~~~~~--~-~~~~~i~~~~~~l~~~~~ 779 (1167)
.|.++..-||+.....|+ ..+..|..|.. +.++-+.|+|..+.. . .+-....+++.+++.+.+
T Consensus 2 dpsq~~e~F~KkiLa~LD~~~~~~~~q~~~~~~~~~~~~~~~l~~~~kII~NgtP~~~~~~~~~~~~Fl~~w~qvp~TqH 81 (174)
T d1q42a_ 2 DPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQPIIPSPQEDCKLQFQKKWLQTPLSSH 81 (174)
T ss_dssp CGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTEECCCCSSCCHHHHHHHHHHTSCCEEE
T ss_pred CHHHHHHHHHHHHHHhccccccchhhHHhHHHHHHHHhcccCCCCCcEEEEcCcccccccccccHHHHHHHHHhccceee
Confidence 478899999999999998 55555555443 334556789987531 2 233456778889999999
Q ss_pred eEeeeeccccCC-CceEEEEEEEEEecCccccceeEEEEEEee
Q 001064 780 EIKTINSLGSWN-GGVLVMVSGSVKTKEFCRRRKFVQTFFLAP 821 (1167)
Q Consensus 780 ~i~~~d~q~~~~-~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~ 821 (1167)
.++++||+..++ |+++|.|+|.|..++. -.-+.-|.+.|..
T Consensus 82 ~Lts~D~H~IPGtgt~i~nv~~KVRFDEs-Grdk~Gq~a~l~~ 123 (174)
T d1q42a_ 82 QLTSYDGHLIPGTGTFVVHFSAKVRFDQS-GRNRLGESADLFQ 123 (174)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEBCS-SCCTTSCCC----
T ss_pred eeeeeeeeeeCCCceEEEEeeeEEEecCc-CCCcCCCcceeec
Confidence 999999999875 4578889999999876 4667788887753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.59 E-value=0.006 Score=54.84 Aligned_cols=89 Identities=6% Similarity=-0.103 Sum_probs=69.4
Q ss_pred hHHHHHHHHHH----hCCCCHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHH
Q 001064 81 GEEDRLWNIVK----ANSSDFSAWTALLEETEKL-AQDNIVKIRRVYDAFLAEFPLCY-GYWKKYADHEARVGSMDKVVE 154 (1167)
Q Consensus 81 ~a~~~l~~~l~----~nP~d~~aw~~L~~~~~~~-~~~~~~~ar~~ye~~l~~~P~~~-~~W~~~a~~e~~~~~~e~A~~ 154 (1167)
+++..|++.+. .++. .++.|.++-.+.+. ...++++++.+++.+++.+|... ++|+.++..+.+.|++++|++
T Consensus 16 ~el~~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~ 94 (124)
T d2pqrb1 16 QQLEILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 94 (124)
T ss_dssp HHHHHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444544333 2333 67888777666542 23678899999999999999775 799999999999999999999
Q ss_pred HHHHHHhccCCCHHHH
Q 001064 155 VYERAVQGVTYSVDIW 170 (1167)
Q Consensus 155 l~eraL~~~P~s~~lw 170 (1167)
.++++|.+.|.+...+
T Consensus 95 ~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 95 YVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHccCCCcHHHH
Confidence 9999999999997664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.012 Score=52.70 Aligned_cols=80 Identities=13% Similarity=-0.019 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 388 PEYWIRYVLCMEASG---SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g---~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
.+..+.||-.|.+.. +.++++.+|+.++...+.+..+.|+.+|..+.+.|++++|+..++++ ++++|++..+....
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~-L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-FEHERNNKQVGALK 113 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HccCCCcHHHHHHH
Confidence 577888887777654 45678888888887663344477888888888889999999998887 78889888776544
Q ss_pred HHHH
Q 001064 465 ANME 468 (1167)
Q Consensus 465 a~~e 468 (1167)
-.++
T Consensus 114 ~~Ie 117 (124)
T d2pqrb1 114 SMVE 117 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.33 E-value=0.012 Score=54.18 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH----cCCHHHHHH
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARA 444 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~ 444 (1167)
|+++|+.+|+++... .++..++.++.. ...+.++|...|+++.+ ..++...+.++.++.. ..|+++|..
T Consensus 8 d~~~A~~~~~kaa~~--g~~~a~~~l~~~--~~~~~~~a~~~~~~aa~---~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL--NEMFGCLSLVSN--SQINKQKLFQYLSKACE---LNSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHT--TCTTHHHHHHTC--TTSCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CChhhhhhhccc--cccCHHHHHHHHhhhhc---ccchhhhhhHHHhhhhccccchhhHHHHH
Confidence 678999999999876 355556666542 24678999999999987 4578888888888765 457899999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~~~~kAl~~~ 488 (1167)
.|+++. + -+++...+.++.++.. ..|+++|..+|++|.+..
T Consensus 81 ~~~~aa-~--~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 81 YYSKAC-G--LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHH-H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhhhh-c--cCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 999983 3 3567777777777765 358999999999998875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.23 E-value=0.017 Score=53.07 Aligned_cols=111 Identities=9% Similarity=-0.088 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHH
Q 001064 403 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAF 478 (1167)
Q Consensus 403 ~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~ 478 (1167)
++++|+..|+++++.. ++...+.++. ....+.++|+..|+++. ..++....+.++.++.. ..|+++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa---~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKAC---ELNSGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhh---cccchhhhhhHHHhhhhccccchhhHHHH
Confidence 5788999999998753 4444444443 23468899999999983 34677888888877764 35789999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhhc
Q 001064 479 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 479 ~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~~~Ar~i~~kal~~~ 529 (1167)
.+|+++.+... +.....++.++.. ...|.++|..+|++|.+.-
T Consensus 80 ~~~~~aa~~g~--------~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLND--------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCc--------chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 99999988652 5566677777544 2458999999999998754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=1.7 Score=47.85 Aligned_cols=182 Identities=10% Similarity=0.073 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF-IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 404 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~-~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~ 404 (1167)
++...++..+.....+ .+..+.+...+...+.. ....+..+.+..++.............+-... +....++.
T Consensus 228 ~d~~~a~~~l~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~ 301 (450)
T d1qsaa1 228 QDAENARLMIPSLAQA-----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDR 301 (450)
T ss_dssp HCHHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCH
T ss_pred cChhHHHHHHHhhhhc-----ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCCh
Confidence 3445555555554432 12344444333333322 22345667777777777666433332222222 23345788
Q ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH-------------------------
Q 001064 405 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE------------------------- 459 (1167)
Q Consensus 405 e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~------------------------- 459 (1167)
..+...+...-. .+...+...+-.++.++..|+.++|...|..+ .. .++..-
T Consensus 302 ~~~~~~~~~l~~-~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~-a~-~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 378 (450)
T d1qsaa1 302 RGLNTWLARLPM-EAKEKDEWRYWQADLLLERGREAEAKEILHQL-MQ-QRGFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (450)
T ss_dssp HHHHHHHHHSCT-TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HT-SCSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred HHHHHHHHhcCc-ccccHHHHHHHHHHHHHHcCChhhHHHHHHHH-hc-CCChHHHHHHHHcCCCCCCCcCCCCccHHHh
Confidence 888777765432 22344555566788899999999999999976 21 121110
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 460 ----AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 460 ----~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka 525 (1167)
--+..+..+...|....|+..+..++...+ +.-...++.+... .|.++.|.....++
T Consensus 379 ~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~--------~~~~~~la~lA~~-~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--------KTEQAQLARYAFN-NQWWDLSVQATIAG 439 (450)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred hhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCC--------HHHHHHHHHHHHH-CCChhHHHHHHHHH
Confidence 124555666677777777777776654321 2334455666555 77777777766655
|
| >d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Synaptojanin 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.016 Score=47.72 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
.+|.+.|+.||+|.-|++ + .+-..|+|.+-.+|.+|+..+|+.+.|+.|+|.-..
T Consensus 39 ~~Llq~l~~~GeViLvRF-v--------~d~mwVTF~dG~SAL~al~l~g~~v~G~~l~It~~~ 93 (95)
T d1ufwa_ 39 TELMQTLGSYGTIVLVRI-N--------QGQMLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEE-E--------TTEEEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred HHHHHHHhhCCeEEEEEE-e--------CCeEEEEECCcHHHHHHhccCCeEEcceEEEEecCC
Confidence 467888999999976553 2 136799999999999999999999999999997543
|
| >d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Smg-4/UPF3 domain: RNA processing protein UPF3x, RRM domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.14 Score=42.81 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=52.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeeC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1100 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g--~~kg~afV~F~~~~~a~~Al~~-~~~~i~g 1100 (1167)
++|-|+.||+++|++++.+.++..|.+..... +..+.+. ....-|+|.|.+.+++..-.+. +|+.+-+
T Consensus 2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f-~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D 72 (91)
T d1uw4a_ 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEF-FSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEE-EESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred ceEEEecCCCCCCHHHHHHHhCCcCceEEEEE-eCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEc
Confidence 57899999999999999999998888776432 3222222 1236799999999999888777 7887754
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.84 E-value=8.6 Score=40.01 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 136 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 136 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
|.+.+.++.+.++++.|.++..++ .+.++|...+..++
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 80 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHH
Confidence 666666667777777766655543 45667777766666
|
| >d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: ECA1476-like domain: Uncharacterized protein ECA1476 species: Pectobacterium atrosepticum [TaxId: 29471]
Probab=90.81 E-value=0.3 Score=43.82 Aligned_cols=114 Identities=8% Similarity=0.035 Sum_probs=64.0
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCCCceEEEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNGGVLVMVSGS 801 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~~~i~v~v~G~ 801 (1167)
...+..|+..|+ .+.+.+..+|.++..++..+|....|...+.+..+.+.......+.....+.-...++..++.....
T Consensus 11 ~~~~~~y~~A~~~~D~~~~~~l~t~Dav~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~A~~~~~~~ 90 (132)
T d3d9ra1 11 EAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQTSADWAFVRSATE 90 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEEccCCcceehHHHHHHHHHHHhhcCCcceeeeccceeeecCCceEEEEEEE
Confidence 567888999987 6899999999998777654444455555544333332222222232222221112223344443333
Q ss_pred E--EecC--ccccceeEEEEEEeeeC-CeEEEEcceEEec
Q 001064 802 V--KTKE--FCRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 836 (1167)
Q Consensus 802 ~--~~~~--~~~~~~F~q~F~L~~~~-~~y~v~nd~fr~~ 836 (1167)
+ +.++ ........-+++|..+. +.|.|..++|..+
T Consensus 91 ~~~~~~~~g~~~~~~~~~~~v~~r~~dG~Wki~~~~~s~~ 130 (132)
T d3d9ra1 91 GTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 130 (132)
T ss_dssp EEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEecCCCcceecceeEEEEEEECCCCcEEEEEEEecCC
Confidence 3 3332 22233445677887775 4599999999654
|
| >d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Limkain-b1, LKAP species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.38 Score=37.44 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+.|.+.|+++|.|.++.+....+ | --.|-|...+..+|.-|+.. ....|++++|.|....
T Consensus 11 q~L~~~f~~h~~V~sv~l~~~~d--g--~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~ 71 (73)
T d2dgxa1 11 QLLQEAFARHGKVKSVELSPHTD--Y--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 71 (73)
T ss_dssp HHHHHHHHHHSCEEEEEECSCCS--T--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred HHHHHHHHhheeEEEEEEEeccC--C--cEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence 34567889999999976533222 2 23689999999999999987 7999999999998764
|
| >d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: YybH-like domain: Hypothetical protein YybH species: Bacillus subtilis [TaxId: 1423]
Probab=89.63 E-value=0.39 Score=42.92 Aligned_cols=106 Identities=12% Similarity=0.103 Sum_probs=58.7
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcC---CCcceeEeeeeccccCCCceEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL---NFTAIEIKTINSLGSWNGGVLVMV 798 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l---~~~~~~i~~~d~q~~~~~~i~v~v 798 (1167)
..++.+|...++ .+.+.|..+|.++.+++..+|....|. ++|.+.+..+ ....+.+...+.+-..++. +..|
T Consensus 6 ~~l~~~~~~A~~~~D~d~~~~l~~~Da~~~~~~g~~~~G~---e~i~~~~~~~~~~~~~~~~~~~~~~~v~~~gD-~A~~ 81 (128)
T d2gxfa1 6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGMIARGK---EEIKKAFITIANYFNHHIVPTQGKMILLEAGD-TVLV 81 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSCEEEHH---HHHHHHHHHTTSCCCSSCCCEEEEEEEEEETT-EEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhccCCcEecCCCcceeeh---HHHHHHHHHHHHhcccccceeecceeEeecCC-ceEE
Confidence 467788888876 789999999999876664455544444 4455555443 2223333332222222222 2234
Q ss_pred EEEEEec----CccccceeEEEEEEeeeC-CeEEEEcce
Q 001064 799 SGSVKTK----EFCRRRKFVQTFFLAPQE-KGYFVLNDI 832 (1167)
Q Consensus 799 ~G~~~~~----~~~~~~~F~q~F~L~~~~-~~y~v~nd~ 832 (1167)
.|..... +.........|+++..+. +.|.|.-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~t~v~~r~~dG~Wki~~D~ 120 (128)
T d2gxfa1 82 LSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDN 120 (128)
T ss_dssp EEEEECCC---------EEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEcCCCCcccceEEEEEEEEECCCCcEEEEEEC
Confidence 4444332 222244567888998875 569888664
|
| >d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: BaiE/LinA-like domain: Uncharacterized protein NpunR1993 species: Nostoc punctiforme [TaxId: 272131]
Probab=88.53 E-value=0.59 Score=43.74 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=68.8
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeeccccCCCceEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLVMVS 799 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q~~~~~~i~v~v~ 799 (1167)
.+++++|...++ .+.+.+..+|.++..++...|....|...+.+..+.+..-... .+++...+.....++..+|...
T Consensus 10 ~al~~~~~~A~~~~D~d~~~~l~a~D~~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~d~Avv~~~ 89 (162)
T d3cu3a1 10 RAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQLALMLVV 89 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhhccCeeeecccccccCCHHHHHHHHHHHHhhcccceeEEeeceEEEEecCCEEEEEEE
Confidence 467888988887 6789999999998776655555555665554443333322222 2344444444333455566666
Q ss_pred EEEEecCc---cccceeEEEEEEeeeCCeEEEEc
Q 001064 800 GSVKTKEF---CRRRKFVQTFFLAPQEKGYFVLN 830 (1167)
Q Consensus 800 G~~~~~~~---~~~~~F~q~F~L~~~~~~y~v~n 830 (1167)
..+..... ...+.+..+++|..++++|.|.+
T Consensus 90 ~~~~~~~~~~~~~~~~~r~t~Vl~K~dG~WrIa~ 123 (162)
T d3cu3a1 90 IRVILPGQTETSASRDSLPLYVVTKGDEGWQIEG 123 (162)
T ss_dssp EEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEE
T ss_pred EEEeecCCCCCCcceeEEEEEEEEEECCEEEEEE
Confidence 66665432 23455788999999999999975
|
| >d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: BxeB1374-like domain: Hypothetical protein BxeB1374 species: Burkholderia xenovorans [TaxId: 36873]
Probab=87.57 E-value=1 Score=39.96 Aligned_cols=115 Identities=10% Similarity=0.043 Sum_probs=69.0
Q ss_pred chhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeeccccCCCceEE
Q 001064 719 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLV 796 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q~~~~~~i~v 796 (1167)
++|-..|-+.|--.-..+.+.|..+|.++..++.+.+... ..+.++|...+...... .+.+...+.....++..+
T Consensus 10 a~I~a~~~~~~~A~~~~D~~~l~~l~a~d~~~v~~~~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~~~i~~~g~d~A~- 86 (128)
T d2owpa1 10 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGIAEV--QHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTDFAT- 86 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECSSCE--EESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTTEEE-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhccCCcEEEeeccce--ecchhHHHHHHHHhhccCcccccceeEEEEeeCceEE-
Confidence 5677777555555556999999999998777776554432 23555566666655322 233333333222223333
Q ss_pred EEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEecc
Q 001064 797 MVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 837 (1167)
Q Consensus 797 ~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 837 (1167)
+++.....+....-+|+++|+....+++|.|..+-+..+.
T Consensus 87 -~~~~~~~~~~~~~Gr~t~v~~r~~~~~gWrIv~~H~S~~~ 126 (128)
T d2owpa1 87 -VSTEFTSDATPLLGRQMQTWARLSPADGWKIVAAHVSLIA 126 (128)
T ss_dssp -EEEEEEETTEEEEEEEEEEEEECSTTTCEEEEEEEEEEEC
T ss_pred -EEEEEEEccCCcceeEEEEEEEcCCCCCEEEEEEeecCCC
Confidence 4455555544233457777777666789999998886654
|
| >d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: SO0125-like domain: Uncharacterized protein SO0125 species: Shewanella oneidensis [TaxId: 70863]
Probab=87.47 E-value=1.5 Score=38.23 Aligned_cols=107 Identities=8% Similarity=-0.044 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhc-CC--Ccce--eEeeeeccccCCCceEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVIS-LN--FTAI--EIKTINSLGSWNGGVLV 796 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~-l~--~~~~--~i~~~d~q~~~~~~i~v 796 (1167)
..-++.|-..++ .+++.+..+|.++..++.+.+.. ...+.++|.+.+.. ++ ...+ .+..+......++..+|
T Consensus 7 ~~~i~~~~~A~~~gD~d~~~~~~~~d~~~~~~~~~~--~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~a~~ 84 (121)
T d3b7ca1 7 VQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK--FRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNYAAMV 84 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC--EEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhccCcceEecCCc--ceecHHHHHHHHHHhhcccccccEEEEeeEEEEEcCCCEEEE
Confidence 345677887776 78999999999988877544322 22344455554433 21 2222 33333333322333333
Q ss_pred EEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceE
Q 001064 797 MVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 833 (1167)
Q Consensus 797 ~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~f 833 (1167)
.....+...+ .......|+++...+++|.|..+-+
T Consensus 85 ~~~~~~~~~~--~~~~~r~T~v~~k~~g~WkIv~~H~ 119 (121)
T d3b7ca1 85 VGRWDLKRLK--DTPTGVFTLLVEKIDDRWVITMDHS 119 (121)
T ss_dssp EEEEEEECSS--CCCEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEcccC--CCcceEEEEEEEEECCEEEEEEEee
Confidence 3333344333 3445667899999999999987654
|
| >d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: BxeB1374-like domain: Uncharacterized protein ECA3500 species: Pectobacterium atrosepticum [TaxId: 29471]
Probab=85.52 E-value=2.5 Score=37.13 Aligned_cols=112 Identities=7% Similarity=0.063 Sum_probs=67.3
Q ss_pred chhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeeccccCCCceEE
Q 001064 719 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLV 796 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q~~~~~~i~v 796 (1167)
++|-..|-+.+-.....+.+.|-.+|.++..++...+.+. ..+.++|.+.+...... ...+...+.....++ ..
T Consensus 13 aeI~a~~~~~~~A~~~~D~~~l~~l~a~D~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~d--~a 88 (127)
T d2rcda1 13 ADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGAGEN--LYGIEEIRAFRLARPSAGLDRALRNTVITTYGHD--MA 88 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEETTEE--EESHHHHHHHHHHSCCTTCCCEEEEEEEEEBTTS--EE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhcCCCcEEEeCCCcc--cccHHHHHHHHHhccccccceEeeeeEEEEeecc--hh
Confidence 4677776544444566999999999999888886665532 23444555555554321 223333332222222 34
Q ss_pred EEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEec
Q 001064 797 MVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 836 (1167)
Q Consensus 797 ~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~ 836 (1167)
++++.....+. ...-.+|.++...+++|.|..+-+.++
T Consensus 89 ~~~~~~~~~~~--~~~Gr~T~v~~r~~ggWkIv~~H~S~~ 126 (127)
T d2rcda1 89 VASTEFTRTGS--TKIGRQMQTWVKMPEGWRIVAAHVSLM 126 (127)
T ss_dssp EEEEEEECSSC--CSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred hheeeecccCC--CCceEEEEEEEEcCCeEEEEEEEEecc
Confidence 45566555543 334456777788899999998877654
|
| >d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-specific ribonuclease PARN species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.52 E-value=1.8 Score=35.98 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=44.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
...||.-..|......||.++|+.||.|. |...+.. -|||...+.+.+..++..
T Consensus 15 RdHVf~~tFP~~Wk~~dI~~lFSpfG~V~---VswIddT------Sa~V~L~~~e~~~~v~~~ 68 (100)
T d1whva_ 15 RDHVLHVTFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTTTCSCC---CEEEETT------EEEEECSCHHHHHHHHHH
T ss_pred cceeEEEeCCcccchhHHHHHhcCCCceE---EEEecCc------eEEEEecCHHHHHHHHHH
Confidence 45789989999999999999999999986 3333432 699999999998888765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.32 E-value=26 Score=36.16 Aligned_cols=128 Identities=10% Similarity=-0.005 Sum_probs=69.7
Q ss_pred CCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001064 66 GAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR 145 (1167)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~ 145 (1167)
.-.++..+.+.|.++.|...+.. ...|-.++..+-++ +++..|..+..++ ++.+.|+.+...+++
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~--------~~d~~rl~~~~v~l--~~~~~avd~~~k~-----~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNN--------VSNFGRLASTLVHL--GEYQAAVDGARKA-----NSTRTWKEVCFACVD 81 (336)
T ss_dssp ------------CTTTHHHHHHH--------TTCHHHHHHHHHTT--TCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh--------CCCHHHHHHHHHhh--ccHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Confidence 44566666666888888877641 22234555555553 5667766665555 678999999999998
Q ss_pred hCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 001064 146 VGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEY 216 (1167)
Q Consensus 146 ~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~ 216 (1167)
.....-+ .+....+. ...+-....+..+. ..|.++....+++.++.... ....+...++....
T Consensus 82 ~~e~~la-~i~~~~~~---~~~d~l~~~v~~ye-~~~~~e~Li~~Le~~~~~~~---~~~~~~~~L~~lya 144 (336)
T d1b89a_ 82 GKEFRLA-QMCGLHIV---VHADELEELINYYQ-DRGYFEELITMLEAALGLER---AHMGMFTELAILYS 144 (336)
T ss_dssp TTCHHHH-HHTTTTTT---TCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSTT---CCHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHhh---cCHHHHHHHHHHHH-HcCChHHHHHHHHHHHcCCc---cchHHHHHHHHHHH
Confidence 8776544 22222222 23333344455544 56888999999998875322 23445555555333
|
| >d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cystatin-like superfamily: NTF2-like family: Orange carotenoid protein, C-terminal domain domain: Orange carotenoid protein, C-terminal domain species: Cyanobacteria (Arthrospira maxima) [TaxId: 129910]
Probab=82.56 E-value=2.3 Score=38.42 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=74.2
Q ss_pred chhHhHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcC--CCcceeEeeeeccccCCCceE
Q 001064 719 AQVGSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL--NFTAIEIKTINSLGSWNGGVL 795 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l--~~~~~~i~~~d~q~~~~~~i~ 795 (1167)
..|...=|..||+.|+ .+.+.+..+|.++..+.- .+. ....|.++|..++... .++.+ -.........++++.
T Consensus 18 ~~i~~~~V~~Y~~a~na~D~d~~~~lFa~Dav~~~-P~~--~p~~G~eaI~~f~~~~~~~~~~~-p~~g~~~~~~~g~~~ 93 (142)
T d1m98a2 18 EGVTNSTVLQYMDNLNANDFDNLISLFAEDGALQP-PFQ--KPIVGKENTLRFFREECQNLKLI-PERGVSEPTEDGYTQ 93 (142)
T ss_dssp BTBCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC-TTS--CCEESHHHHHHHHHHHCTTCEEE-EEEEEEEECGGGCEE
T ss_pred ccccHHHHHHHHHHHhcCCHHHHHHHcCCCeEEeC-CCC--ccccCHHHHHHHHHHhcccceec-ccceeeEeecCCcEE
Confidence 3466677999999997 789999999999865542 221 2345666777787764 22222 112223334567899
Q ss_pred EEEEEEEEecC--ccccceeEEEEEEeeeCCeEEEEcceE
Q 001064 796 VMVSGSVKTKE--FCRRRKFVQTFFLAPQEKGYFVLNDIF 833 (1167)
Q Consensus 796 v~v~G~~~~~~--~~~~~~F~q~F~L~~~~~~y~v~nd~f 833 (1167)
|.|+|.++..- ......|.=.|.|-++++=+||.=|.+
T Consensus 94 v~vtgkV~~~~~G~~~~vn~a~~F~ln~~GkI~~v~i~ll 133 (142)
T d1m98a2 94 IKVTGKVQTPWFGGNVGMNIAWRFLLNPENKVFFVAIDLL 133 (142)
T ss_dssp EEEEEEEECTTTGGGCCEEEEEEEEECTTSCEEEEEEEEB
T ss_pred EEEEEEEecCCCCcceeeeeEEEEEECCCCcEEEEEeehh
Confidence 99999998742 222466777899988877777775554
|