Citrus Sinensis ID: 001065

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------117
MKSRDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPR
cccccccEEEEEEEEEEEEcccccEEEcccEEEEcccccccccccccccccccEEEEEEEccccEEEEEEEccccEEEEccccccEEEEEEEccccccccccEEEEEEcccccccccEEEEEEEEEEEEEEEEEccccccccccccccccEEEEEEEccccEEEEEEEccccEEEEEEEccccEEEEEEccccEEEEcEEEEEEEcccccEEEEEEEccccEEEEEEEEcccccccEEEEEEEccccEEEcccccccccccccEEEEEEEccccEEEEcccccEEEEEEEEEccccEEEEEcccEEEEEEcccEEEEEEEEEEEcEEEEEEEEccccccEEcEEEEEccEEEEEEccccEEEEcccccccEEEEEEccccEEcccEEEEEccccccEEEEEEEEEEEEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEEEcccccccEEEccccEEEEEcccEEEEEEEEEEEEEEEEEEEEccccccEEEEEEEEcEEEccccEEEEEEEcccccEEEEcccccEEEEEEEEEccccccccccccEEcccEEEEEEEcccccccEEEEEEEEEEEEEEccccEEEEcccccEEEEEEccccEEEEEEccEEEEEEEccccEEEccccEEEEccccccEEEEEEEEEEEEEEEEEEccccccccccccEEEEEEccccccEEEEEEEccccccccccccEEEEEEEEcccccEEEEEcccccccccEEEEcccEEEEEEEcccccccccEEEcccccEEEccccccccccEEEEEEccccccEEcccccEEEEEEEcccccEEccccccccEEEEEEccccEEEEEcccccEEEEEEEEEEEEEEEEcccccccccEEEEEEcccccEEcEEEccccEEEEcccccccEEEEEcccccccccccEEEEcccccEEEEEEEEEEEEEEEEEEEEcccccccccEEEEEEEccccEEEEEEEcccEEEEEcccccccEEEEEEEEcccccccccccccccEEEEEEccccccccEEEEEEccccEEEEEEEEcccccccccEEEEEEEEccccccEEEEEEcccccEEEEEccccccEEEEEEEEccccccEEEEEEEEEEEEcccEEEEEEEEEEEEEccccccccccccHHHHHHHHHEEEEccccc
cccHHHHHHHHHEEHHHHccccccEEEcccEEEEcccccccccccccccccccEEEEEEcccccEEEEEEEccccEEEEcccccccEEEEEEcccccEEccccEEEEEccccccccccEEEEEEccEEccEEEEccccccccccccccccEEEEEEcccccEEEEEEEccccEEEEcccccccEEEEEEccccEEEEcccEEEEEccccccccccEEEcccEEEEEEEccccccccEEEEEEcccccccccccccccccccccEEEEEEEccccEEEEcccccccEEEEEEccccccEEEcccccEEEEEccccEEEcccEEEccEEEccEEEcccccccccEEEEEcccEEEEEccccEEEEcccccccEEEEEEccccEEcccEEEEEcccccccccEEEcccEEEEEEEEccccccEEEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEEEcccccccccEEccccEEEEEccccEEEEEEEEEEcEEEEEEEEccccccEEEEEEEEcccccccccEEEEEEEccccEEEEcccccccEEEEEEccccccccccccccccccEEEEEEEccccccEEEEEccEEEEEEEcccEEEEEEEccccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEcccccEEEEEEEcccEEEEEEEEEccccccccccccEEEEEEEccccEEEEEEccccccccccccccEEEEEEEcccccEEEEEccccccccccEEEEccccEEEEEccccccccEEEEEccccEEEEcEEcccccccEEEEEccccccEcccccccEEEEEEEccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEEEEEEEEEEEccccccccccEEEEEEcccccccccEEccccEEEEcccccccEEEEccccHcccccccEEEEEEcccEEEEEEEEEEEEEEEEEEEEEccccccccEEEEEEcccccEEEEEEEccccEEEEcccccccEEEEEEEcccccccccHHcccccEEEEEEccccccccEEEEEEcccEEEEEEEEEEccccccccEEEEEEEcccccccEEEEEEccccEEEEccccccccEEEEEEEcccccccEEEEEEEEEcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccc
MKSRDTLTYLLIIIYSIAAvsadsihgcggfVEASSSLIksrkatdarldySHVTVELRTLDGlvkestqcapngyyfipvydkgsfvikvngpegwswnpdkvAVTVddtgcngnedinfRFTGFTLLGRVVGaiggescldkgggpsnVNVELLSHsgdlissvitssegsylfkniipgkyklrashpnlsvevrgSTEVElgfengevddiffapgyEIRGLVvaqgnpilgVHIYLYsddvgkvdcpqgsgnalGERKALCHAVsdadgkfmfksvpcgqyelvphykgentvfdvspslvsmsvrhqhvtvpekfqvtgfsvggrvvdendmgveGVKILVDGhersitdrdgyykldqvtsnryTIEAVKVHYKFNKlkeymvlpnmasiaDIKAISYDICGVVRTVGSGNKVKVALthgpdkvkpqvkqtdnngnfcfevppgeyrlsamaatpesssgilflppyadvvvkspllnIEFSQALVNVLGnvackercgplVTVTLMRLgqkhydgtekktvsltddsdqflfrdvlpgkyrlevkrtsreassmednwcweqsfigvdvgtndvkgvEFVQKGYWLNVISThdvdaymtqqdgshvplkvkkgsqhicvespgvhnlhfvnpcvffgspvlkmdtsnpspiylkgekyqlrghinvqsrspigvhelpenIIVDIlngdgsisnrttatltspandqtsyaVYGFSLwanlgdqltfvprdprgneekkilfyprqrqvsvtndgcqalipafsgrlglytegsvspplsgvniRIIAAEDSQIASLKKGHLaletstgadgsfiggplydditynveaskpgyylrqvgpnsfscqklsQISVRiyskddagepipsvllslsgddgyrnnsvswaggsfhfdnlfpgnfylrpllkeyafsppaqaielgsgesREVIFQATRVAYSATGTitllsgqpkdgvsvearseskgyyeetvtdtsgsyrlrglhpdtTYVIKVVKkdgfgstkieraspesvtvkvgsgdikgldflvfeqpektilsghvegnrIKELNSHLLVEIKsasdtskvesvislpmsnffqvkdlpkgkhllqlrsslpssthrfeSEIIEvdleknaqihvgplrysveenhhkqdltpapvfplIVGVSVIGLFISMPR
MKSRDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKsrkatdarldyshVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGpegwswnpdKVAVTVDDTGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVggrvvdendmgVEGVKIlvdghersitdrdgyykldqvtsnrytieaVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKVKVAlthgpdkvkpqvkqtdnngNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQkhydgtekktvsltddsdqflfrdvlpgkyrlevkrtsreassmednwcWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTatltspandqTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKIlfyprqrqvsvtnDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIyskddagePIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGtitllsgqpkdgvsvearseskgyyeetvtdtsgsyrlrglhpdttyVIKVVKKDgfgstkieraspesvtvkvgsGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLrsslpssthRFESEIIevdleknaQIHVGPLRYSVEENHHKQdltpapvfpliVGVSVIGLFISMPR
MKSRdtltylliiiysiaavsadsiHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPR
*****TLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTH***************GNFCFEVPPGEYRLS*********SGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEV**********EDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATL****NDQTSYAVYGFSLWANLGDQLTFVPRD*****EKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLS**********************VTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKI*******VTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIK*********SVISLPMSNFFQVKDLP****L***************SEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFI****
****DTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNR*************SYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSL*****RFESEIIEVDLEKNAQIHVGPL***************APVFPLIVGVSVIGLFISMP*
MKSRDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKR*********DNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERA*********GSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPR
*KSRDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLI****ATDARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSV****HKQDLTPAPVFPLIVGVSVIGLFISMPR
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SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHii
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MKSRDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIGLFISMPR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1167 2.2.26 [Sep-21-2011]
Q5JPE71267 Nodal modulator 2 OS=Homo yes no 0.901 0.830 0.317 1e-144
Q151551222 Nodal modulator 1 OS=Homo yes no 0.878 0.838 0.320 1e-144
P698491222 Nodal modulator 3 OS=Homo yes no 0.878 0.838 0.321 1e-144
Q6GQT91214 Nodal modulator 1 OS=Mus yes no 0.880 0.846 0.313 1e-144
Q54CU4 11103 Colossin-A OS=Dictyosteli no no 0.239 0.025 0.262 2e-06
Q932F71141 Serine-aspartate repeat-c yes no 0.133 0.136 0.280 0.0006
Q99W461141 Serine-aspartate repeat-c yes no 0.133 0.136 0.280 0.0006
Q2FJ771154 Serine-aspartate repeat-c N/A no 0.133 0.135 0.280 0.0007
Q5HIB21166 Serine-aspartate repeat-c yes no 0.133 0.133 0.280 0.0007
O864891166 Serine-aspartate repeat-c yes no 0.133 0.133 0.280 0.0007
>sp|Q5JPE7|NOMO2_HUMAN Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1 Back     alignment and function desciption
 Score =  514 bits (1323), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 378/1190 (31%), Positives = 579/1190 (48%), Gaps = 138/1190 (11%)

Query: 21   SADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAPN-GYYFI 79
            S D + GCGGFV++           D  ++YS + ++L T  G +K  T CAPN GY+ I
Sbjct: 32   SEDIVVGCGGFVKS-----------DVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMI 80

Query: 80   PVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTG--CNGNEDINFRFTGFTLLGRVVGAIG 137
            P+YDKG F++K+  P GWS+ P  V + VD     C    DINF FTGF++ G+V     
Sbjct: 81   PLYDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGKV----- 135

Query: 138  GESCLDKGG--GPSNVNVELLSHSGDL-ISSVITSSEGSYLFKNIIPGKYKLRASHPNLS 194
                L KG   GP+ V V L +   +  I S +T   G + F  ++PG Y++ A+HP  +
Sbjct: 136  ----LSKGQPLGPAGVQVSLRNTGTEAKIQSTVTQPGGKFAFFKVLPGDYEILATHPTWA 191

Query: 195  VEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDC--- 251
            ++   ST V +   N          GY + G V + G P+ GV   L+S  V K D    
Sbjct: 192  LK-EASTTVRVTNSNANAASPLIVAGYNVSGSVRSDGEPMKGVKFLLFSSLVTKEDVLGC 250

Query: 252  ---PQGSGNALGERKA-LCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVS 307
               P        E    LC+ VS  DG F F S+P G Y ++P Y+GE   FDV+PS + 
Sbjct: 251  NVSPVPGFQPQDESLVYLCYTVSREDGSFSFYSLPSGGYTVIPFYRGERITFDVAPSRLD 310

Query: 308  MSVRHQHVTVPEKFQVTGFSVGGRVVD--ENDMGVEGVKILVDGHERSITDRDGYYKLDQ 365
             +V H  + +   F V GFSV GRV++  E D GV    + ++   +  T  DG ++L+ 
Sbjct: 311  FTVEHDSLKIEPVFHVMGFSVTGRVLNGPEGD-GVPEAVVTLNNQIKVKTKADGSFRLEN 369

Query: 366  VTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICG---VVR---TVGSGNK 419
            +T+  YTI A K H  F  +    + PN   +ADI A  + +CG   ++R   TV   NK
Sbjct: 370  ITTGTYTIHAQKEHLYFETVT-IKIAPNTPQLADIVATGFSVCGRISIIRFPDTVKQMNK 428

Query: 420  VKVALTHGPDKVKPQVK-QTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLP-PYADV 477
             KV L+   DK K  V  +TD +G+FCF+  PG Y++  M    E+ +G+   P  +   
Sbjct: 429  YKVVLS-SQDKDKSLVTVETDAHGSFCFKAKPGTYKVQVMVPEAETRAGLTLKPQTFPLT 487

Query: 478  VVKSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTD--DS 535
            V   P++++ F Q L +V G V+C + CG L+ VTL  L ++     EK+++ L+   ++
Sbjct: 488  VTDRPVMDVAFVQFLASVSGKVSCLDTCGDLL-VTLQSLSRQ----GEKRSLQLSGKVNA 542

Query: 536  DQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLN 595
              F F +VLPGKY++ +         M ++WCW+   + V+V  +DV  VEF Q GY L 
Sbjct: 543  MTFTFDNVLPGKYKISI---------MHEDWCWKNKSLEVEVLEDDVSAVEFRQTGYMLR 593

Query: 596  VISTHDVDAYMTQQDGSHVPLKV---KKGSQHICVESPGVHNLHFVNP--CVFFGSPVLK 650
               +H +     Q       + +    KG    C+  PGV+    V P  C  F      
Sbjct: 594  CSLSHAITLEFYQDGNGRENVGIYNLSKGVNRFCLSKPGVYK---VTPRSCHRFEQAFYT 650

Query: 651  MDTSNPSPIYLKGEKYQLRGHI--------NVQSRSPI------------GVHEL-PENI 689
             DTS+PS + L   ++ + G I         V  +S I             V EL  E  
Sbjct: 651  YDTSSPSILTLTAIRHHVLGTITTDKMMDVTVTIKSSIDSEPALVLGPLKSVQELRREQQ 710

Query: 690  IVDILNGDGSISNRTTATLTSPANDQTSYAV------------YGFSLWANLGDQLTFVP 737
            + +I   +     R            T   V            Y FS WA  G+++T  P
Sbjct: 711  LAEI---EARRQEREKNGNEEGEERMTKPPVQEMVDELQGPFSYDFSYWARSGEKITVTP 767

Query: 738  RDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAA 797
                    K++LFYP   +  V+ + C   +    G+ GL+ EG + P L GV I I  +
Sbjct: 768  ------SSKELLFYPPSMEAVVSGESCPGKLIEIHGKAGLFLEGQIHPELEGVEIVI--S 819

Query: 798  EDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGPN--SFSCQ 855
            E    + L      +   T   G++  GPL+ D+ Y V + K GY L  V      F   
Sbjct: 820  EKGASSPL------ITVFTDDKGAYSVGPLHSDLEYTVTSQKEGYVLTAVEGTIGDFKAY 873

Query: 856  KLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLL 915
             L+ +S  I ++DD  +P+P VLLSLSG   +R+N ++   G   F NL PG +Y +P++
Sbjct: 874  ALAGVSFEIKAEDD--QPLPGVLLSLSGGL-FRSNLLTQDNGILTFSNLSPGQYYFKPMM 930

Query: 916  KEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEA--RSESKG 973
            KE+ F P +Q IE+  G++ ++     R AYS  GT++ L+G+P+ GV++EA  +++   
Sbjct: 931  KEFRFEPSSQMIEVQEGQNLKITITGYRTAYSCYGTVSSLNGEPEQGVAMEAVGQNDCSI 990

Query: 974  YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLD 1033
            Y E+TVTD  G +RLRGL P   Y +++  +   G+  IERA P    ++VG+ DI  ++
Sbjct: 991  YGEDTVTDEEGKFRLRGLLPGCVYHVQLKAE---GNDHIERALPHHRVIEVGNNDIDDVN 1047

Query: 1034 FLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPK 1093
             +VF Q  +  LSG+V  +   E    L V++  + +       +SL  S FF    L +
Sbjct: 1048 IIVFRQINQFDLSGNVITS--SEYLPTLWVKLYKSENLDNPIQTVSLGQSLFFHFPPLLR 1105

Query: 1094 G--KHLLQLRSSLPSSTHRF---ESEIIEVDLEKNAQIHVGPLRYSVEEN 1138
                +++ L S+LP S + +   +     V   K+  +   P R   E++
Sbjct: 1106 DGENYVVLLDSTLPRSQYDYILPQVSFTAVGYHKHITLIFNPTRKLPEQD 1155
May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning, via its interaction with NCLN.
Homo sapiens (taxid: 9606)
>sp|Q15155|NOMO1_HUMAN Nodal modulator 1 OS=Homo sapiens GN=NOMO1 PE=1 SV=5 Back     alignment and function description
>sp|P69849|NOMO3_HUMAN Nodal modulator 3 OS=Homo sapiens GN=NOMO3 PE=2 SV=2 Back     alignment and function description
>sp|Q6GQT9|NOMO1_MOUSE Nodal modulator 1 OS=Mus musculus GN=Nomo1 PE=1 SV=1 Back     alignment and function description
>sp|Q54CU4|COLA_DICDI Colossin-A OS=Dictyostelium discoideum GN=colA PE=3 SV=1 Back     alignment and function description
>sp|Q932F7|SDRE_STAAM Serine-aspartate repeat-containing protein E OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdrE PE=3 SV=1 Back     alignment and function description
>sp|Q99W46|SDRE_STAAN Serine-aspartate repeat-containing protein E OS=Staphylococcus aureus (strain N315) GN=sdrE PE=1 SV=1 Back     alignment and function description
>sp|Q2FJ77|SDRE_STAA3 Serine-aspartate repeat-containing protein E OS=Staphylococcus aureus (strain USA300) GN=sdrE PE=3 SV=1 Back     alignment and function description
>sp|Q5HIB2|SDRE_STAAC Serine-aspartate repeat-containing protein E OS=Staphylococcus aureus (strain COL) GN=sdrE PE=3 SV=1 Back     alignment and function description
>sp|O86489|SDRE_STAAE Serine-aspartate repeat-containing protein E OS=Staphylococcus aureus (strain Newman) GN=sdrE PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1167
2555484091198 carboxypeptidase regulatory region-conta 0.997 0.971 0.756 0.0
2254375981199 PREDICTED: nodal modulator 1 [Vitis vini 0.998 0.971 0.766 0.0
4494364111199 PREDICTED: nodal modulator 2-like [Cucum 0.996 0.969 0.696 0.0
3565728031195 PREDICTED: nodal modulator 1-like [Glyci 0.988 0.965 0.709 0.0
3565039401195 PREDICTED: nodal modulator 1-like [Glyci 0.988 0.965 0.708 0.0
2978211421225 hypothetical protein ARALYDRAFT_486740 [ 0.987 0.940 0.666 0.0
152287371227 carbohydrate-binding-like fold-containin 0.987 0.938 0.661 0.0
3571280741203 PREDICTED: nodal modulator 1-like [Brach 0.979 0.950 0.595 0.0
1255255411193 hypothetical protein OsI_01543 [Oryza sa 0.974 0.953 0.598 0.0
1255700551193 hypothetical protein OsJ_01438 [Oryza sa 0.974 0.953 0.598 0.0
>gi|255548409|ref|XP_002515261.1| carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis] gi|223545741|gb|EEF47245.1| carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1830 bits (4739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 883/1167 (75%), Positives = 1007/1167 (86%), Gaps = 3/1167 (0%)

Query: 1    MKSRDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRT 60
            MK RD L Y  I++YS +  SADSIHGCGGFVEASSSLIKSRK+TD +LDYS +TVELRT
Sbjct: 1    MKIRDALLYFSILLYSFSFASADSIHGCGGFVEASSSLIKSRKSTDTKLDYSDITVELRT 60

Query: 61   LDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDIN 120
            +DGLVKE TQCAPNGYYFIPVYDKGSFVIK++GPEGWSW+P+ V V VDDTGCN NEDIN
Sbjct: 61   VDGLVKERTQCAPNGYYFIPVYDKGSFVIKISGPEGWSWDPESVPVIVDDTGCNHNEDIN 120

Query: 121  FRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNII 180
            FRFTGFTL GRV+GA+GGESCL K GGPSNVNVELLS S D ISSV+TS+ GSY F NII
Sbjct: 121  FRFTGFTLSGRVMGAVGGESCLVKSGGPSNVNVELLSPSDDFISSVLTSATGSYSFNNII 180

Query: 181  PGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIY 240
            PGKYK+RASHP+L VEV+GSTEV LGFENG VDDIFF PGY++ G VVAQGNPILGVHI+
Sbjct: 181  PGKYKIRASHPDLKVEVKGSTEVHLGFENGIVDDIFFVPGYDLHGYVVAQGNPILGVHIF 240

Query: 241  LYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFD 300
            LYS+DV ++DCPQGSG+A G+R  LCHA+SDADG F FKS+PCG+YELVP+YKGENT+FD
Sbjct: 241  LYSEDVVELDCPQGSGDATGQRNPLCHAISDADGMFSFKSLPCGRYELVPYYKGENTLFD 300

Query: 301  VSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILVDGHERSITDRDGY 360
            VSP LVS+SV HQHVTVP+KFQVTGFSVGGRV D NDMGVEGVKI+VDGHERS+TD++GY
Sbjct: 301  VSPPLVSVSVEHQHVTVPQKFQVTGFSVGGRVADGNDMGVEGVKIIVDGHERSMTDKEGY 360

Query: 361  YKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKV 420
            YKLDQVTSN YTIEA K HY+FN LKEYMVLPNMAS+ADIKAISYD+CGVVR V SG K 
Sbjct: 361  YKLDQVTSNHYTIEARKEHYRFNSLKEYMVLPNMASVADIKAISYDVCGVVRMVNSGYKA 420

Query: 421  KVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVK 480
            KV LTHGP+ VKPQ +QTD +G FCFEV PGEYRLSA AATPES+ G+LFLPPY D+VVK
Sbjct: 421  KVTLTHGPENVKPQARQTDGDGKFCFEVAPGEYRLSAFAATPESAPGLLFLPPYVDLVVK 480

Query: 481  SPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLF 540
            SPL+N+EFSQALVNVLG+V CKE+CGP V+VTLMRLG K  +  E+K+++LTD+SD+FLF
Sbjct: 481  SPLMNVEFSQALVNVLGSVTCKEKCGPSVSVTLMRLGGKRNE--ERKSITLTDESDEFLF 538

Query: 541  RDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTH 600
             +VLPGKYR+EVK +S  A+  +DNWCWEQSFI V VG  DVKG  FVQKGYW+NV+STH
Sbjct: 539  ANVLPGKYRIEVKHSSHGATPDKDNWCWEQSFIDVVVGAEDVKGNLFVQKGYWVNVVSTH 598

Query: 601  DVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIY 660
            D+DAY+TQ D S + LK+KKGSQHICVESPGVH LHF+N C+ F S  +K+DTSNPSP+Y
Sbjct: 599  DIDAYLTQPDHSIINLKIKKGSQHICVESPGVHELHFINSCILFASSPMKIDTSNPSPVY 658

Query: 661  LKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAV 720
            L+GEKY L+G I V+  S  G++E P N +VDILNGD S+ +  +A L S A+D TS  +
Sbjct: 659  LRGEKYLLKGQIKVELSSADGLYEPPNNFVVDILNGDSSVIDGASANLASGASDHTSTGI 718

Query: 721  YGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTE 780
            Y +S+WANLG++LTFVPRD R N EK+ILFYP++  V V NDGCQA IP FSGR GLY E
Sbjct: 719  YEYSIWANLGEKLTFVPRDSRVNGEKRILFYPKEHNVLVANDGCQASIPVFSGRPGLYIE 778

Query: 781  GSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKP 840
            GSVSPPLSGV I+I AAEDS +  LKK  LALET TG DGSF+GGPLYDDI+Y+VEASKP
Sbjct: 779  GSVSPPLSGVYIKISAAEDSHVTLLKKDDLALETVTGMDGSFVGGPLYDDISYSVEASKP 838

Query: 841  GYYLRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFH 900
            GY+L+++GP+SFSCQKL QIS+ IYSKDDA EPIPSVLLSLSGDDGYRNNSVS AGG+F 
Sbjct: 839  GYHLKRMGPHSFSCQKLGQISIHIYSKDDANEPIPSVLLSLSGDDGYRNNSVSGAGGTFL 898

Query: 901  FDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPK 960
            FDNLFPG FYLRPLLKEYAFSPPAQAIELGSG++REV F+ATRVAYSATG ITLLSGQPK
Sbjct: 899  FDNLFPGTFYLRPLLKEYAFSPPAQAIELGSGDTREVTFEATRVAYSATGMITLLSGQPK 958

Query: 961  DGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESV 1020
            +GVSVEARSESKGYYEETVTD+SG+YRLRGL PDTTYVIKVV+K G GS   ERASPES 
Sbjct: 959  EGVSVEARSESKGYYEETVTDSSGNYRLRGLVPDTTYVIKVVEKHGLGSA-FERASPESY 1017

Query: 1021 TVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISL 1080
            TVKVG GDIK LDF+VFEQ E TILS +VEG R +E +SHLLVEIKSASDTSK+ESV  L
Sbjct: 1018 TVKVGHGDIKALDFVVFEQLEMTILSCNVEGKRTEEFHSHLLVEIKSASDTSKIESVFPL 1077

Query: 1081 PMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHH 1140
            P+SNFFQVK+LPKGKHLLQLRSSL SST +FES+IIEVDLEK AQIHVGPLRY+ EE+H 
Sbjct: 1078 PLSNFFQVKNLPKGKHLLQLRSSLQSSTLKFESDIIEVDLEKTAQIHVGPLRYNFEEDHQ 1137

Query: 1141 KQDLTPAPVFPLIVGVSVIGLFISMPR 1167
            KQ+LT APV PL+VGVSVI LFISMPR
Sbjct: 1138 KQELTVAPVLPLVVGVSVIALFISMPR 1164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437598|ref|XP_002271147.1| PREDICTED: nodal modulator 1 [Vitis vinifera] gi|297743995|emb|CBI36965.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436411|ref|XP_004135986.1| PREDICTED: nodal modulator 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356572803|ref|XP_003554555.1| PREDICTED: nodal modulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356503940|ref|XP_003520757.1| PREDICTED: nodal modulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297821142|ref|XP_002878454.1| hypothetical protein ARALYDRAFT_486740 [Arabidopsis lyrata subsp. lyrata] gi|297324292|gb|EFH54713.1| hypothetical protein ARALYDRAFT_486740 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15228737|ref|NP_191795.1| carbohydrate-binding-like fold-containing protein [Arabidopsis thaliana] gi|7340707|emb|CAB82950.1| putative protein [Arabidopsis thaliana] gi|332646822|gb|AEE80343.1| carbohydrate-binding-like fold-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357128074|ref|XP_003565701.1| PREDICTED: nodal modulator 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|125525541|gb|EAY73655.1| hypothetical protein OsI_01543 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|125570055|gb|EAZ11570.1| hypothetical protein OsJ_01438 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1167
TAIR|locus:20960491227 AT3G62360 [Arabidopsis thalian 0.678 0.645 0.645 0.0
RGD|13052401214 Nomo1 "nodal modulator 1" [Rat 0.521 0.501 0.342 1.4e-146
MGI|MGI:23858501214 Nomo1 "nodal modulator 1" [Mus 0.521 0.501 0.336 6.9e-145
ZFIN|ZDB-GENE-040826-31217 nomo "nodal modulator" [Danio 0.878 0.842 0.321 2.9e-135
UNIPROTKB|F1NZW11215 PM5 "Uncharacterized protein" 0.901 0.865 0.304 1.3e-125
UNIPROTKB|F1MF761222 NOMO2 "Uncharacterized protein 0.694 0.662 0.313 2.5e-104
FB|FBgn00334821199 CG1371 [Drosophila melanogaste 0.487 0.474 0.290 3.4e-100
UNIPROTKB|Q5JPE71267 NOMO2 "Nodal modulator 2" [Hom 0.730 0.672 0.304 7.4e-98
UNIPROTKB|Q4G1771100 NOMO2 "NOMO2 protein" [Homo sa 0.730 0.774 0.304 7.4e-98
UNIPROTKB|J3KN361267 NOMO3 "Nodal modulator 3" [Hom 0.730 0.672 0.304 9.4e-98
TAIR|locus:2096049 AT3G62360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2698 (954.8 bits), Expect = 0., Sum P(2) = 0.
 Identities = 519/804 (64%), Positives = 637/804 (79%)

Query:   365 QVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAISYDICGVVRTVGSGNKVKVAL 424
             +VTSN+YTI+AVK HYKF+KLK++MVLPNMAS+ DI A+SYDICGVVR  GS +K KVAL
Sbjct:   401 KVTSNQYTIDAVKEHYKFDKLKKFMVLPNMASLPDINAVSYDICGVVRMFGSRHKAKVAL 460

Query:   425 THGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLL 484
             THGP  VKPQ+K TD  G FCFEVPPGEYRLSA+AATP+ +S +LFLP Y DV VKSPLL
Sbjct:   461 THGPTNVKPQMKLTDETGAFCFEVPPGEYRLSALAATPKGASELLFLPAYVDVAVKSPLL 520

Query:   485 NIEFSQALVNVLGNVACKERCGPLVTVTLM-RLGQKHYDGTEKKTVSLTDDSDQFLFRDV 543
             NIEFSQA VNV G+V CKE+CGP V+V L+   G +     +KKTV LTD+S QFLF D+
Sbjct:   521 NIEFSQARVNVHGSVTCKEKCGPSVSVVLVGAAGDR-----DKKTVVLTDESSQFLFSDI 575

Query:   544 LPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVD 603
             LPGKYR+EVK  S EA+S ED+WCW++S I V+VGT D+KG+EFVQKGYW+N+ISTH+VD
Sbjct:   576 LPGKYRVEVKSISPEAASDEDSWCWDRSSIDVNVGTEDIKGIEFVQKGYWINIISTHEVD 635

Query:   604 AYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKG 663
             A +   DGS   LK+KKGSQ IC+ESPG H L   + C+ FGS  +K+D SNP PI+LK 
Sbjct:   636 ARIAHPDGSPTSLKIKKGSQKICIESPGGHELQLSDSCMSFGSNSIKIDVSNPQPIHLKA 695

Query:   664 EKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGF 723
             EKY L+G INV+S S I   EL EN IVDI +  G++ N   A L S  +      VY +
Sbjct:   696 EKYLLKGLINVESSSTIE-SELQENFIVDIQDKKGNVINTIAAKLASDGS-----GVYEY 749

Query:   724 SLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSV 783
               WA+LG++++FVP+D RGN EKK+LFYP++    V+ DGCQA +  F+GRLGLY +GSV
Sbjct:   750 YTWASLGEKISFVPQDSRGNVEKKMLFYPKEIHAVVSKDGCQASVSPFTGRLGLYIQGSV 809

Query:   784 SPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYY 843
             SPPL GVNI+I AA+DS I+SLKKG +A+ETST + GSF+ GPLYDDI Y  EASKPGY+
Sbjct:   810 SPPLPGVNIKIFAAKDSLISSLKKGEIAIETSTLSAGSFVAGPLYDDIPYATEASKPGYH 869

Query:   844 LRQVGPNSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDN 903
             ++++GP SFSCQKL QISVR+ SKD+A   IP +LLSLSGD GYRNNS+S AGG F FD+
Sbjct:   870 IKRLGPYSFSCQKLGQISVRVNSKDNAETSIPPLLLSLSGDHGYRNNSISGAGGLFVFDS 929

Query:   904 LFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGV 963
             LFPGNFYLRPLLKEY+F P   AIEL SGES E +F+ATRVAYSA G + LLSGQP++GV
Sbjct:   930 LFPGNFYLRPLLKEYSFKPSTLAIELNSGESSEAVFEATRVAYSAMGRVALLSGQPQEGV 989

Query:   964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVK 1023
             ++EARS+SKGYYEET +D +G+YRLRGLHPDT YVIKV KK G  + +IERASPESV+++
Sbjct:   990 AIEARSDSKGYYEETTSDINGNYRLRGLHPDTAYVIKVSKKIGSANNQIERASPESVSLQ 1049

Query:  1024 VGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMS 1083
             +G  DI GLDFLVFEQPE TIL+ HVEG + ++LNS+LLVEIKSA D SK+E+V  LP+S
Sbjct:  1050 IGYEDINGLDFLVFEQPETTILTCHVEGKQNEDLNSNLLVEIKSAIDKSKIENVFPLPLS 1109

Query:  1084 NFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQD 1143
             NFFQVK LPKGKHL+QL+SS P  +H+ ESEIIEVD E NAQIH+GPLRYS+  +H  Q+
Sbjct:  1110 NFFQVKGLPKGKHLVQLKSSRPLISHKVESEIIEVDFETNAQIHIGPLRYSIVADHQSQE 1169

Query:  1144 LTPAPVFPLIVGVSVIGLFISMPR 1167
             +TPA + PL++GVS I LF+S+PR
Sbjct:  1170 VTPAAILPLVIGVSAIALFLSIPR 1193
GO:0005576 "extracellular region" evidence=ISM
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
RGD|1305240 Nomo1 "nodal modulator 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2385850 Nomo1 "nodal modulator 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040826-3 nomo "nodal modulator" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZW1 PM5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MF76 NOMO2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0033482 CG1371 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JPE7 NOMO2 "Nodal modulator 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4G177 NOMO2 "NOMO2 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KN36 NOMO3 "Nodal modulator 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P69849NOMO3_HUMANNo assigned EC number0.32150.87830.8387yesno
Q6GQT9NOMO1_MOUSENo assigned EC number0.31370.88080.8467yesno
Q15155NOMO1_HUMANNo assigned EC number0.32060.87830.8387yesno
Q5JPE7NOMO2_HUMANNo assigned EC number0.31760.90140.8303yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1167
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 3e-08
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 9e-07
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 1e-05
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 5e-04
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information 
 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 949  TGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFG 1008
            +GT+T  SG P  G +V   +   G    T TD  G + L GL P T  +   V   G+ 
Sbjct: 3    SGTVTDASGAPIPGATVTLTNADTGTVRGTTTDADGRFSLTGLPPGTYTL--TVSAPGYK 60

Query: 1009 STKIERASPESVTVKVGSGDIKGLDF 1034
            S  ++        V V +G    LD 
Sbjct: 61   SQTVK-------DVTVTAGQTTTLDI 79

Length = 81
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1167
KOG19481165 consensus Metalloproteinase-related collagenase pM 100.0
KOG19481165 consensus Metalloproteinase-related collagenase pM 100.0
COG49321531 Predicted outer membrane protein [Cell envelope bi 99.97
COG49321531 Predicted outer membrane protein [Cell envelope bi 99.96
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.87
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.79
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 98.28
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.14
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 98.13
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.04
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 97.9
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 97.75
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.72
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.71
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.68
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 97.57
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.52
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 97.47
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 97.37
PRK15036137 hydroxyisourate hydrolase; Provisional 97.32
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 97.31
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.3
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 97.28
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 97.23
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.16
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.06
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.04
PRK15036137 hydroxyisourate hydrolase; Provisional 96.88
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.86
KOG2649500 consensus Zinc carboxypeptidase [General function 96.69
KOG05181113 consensus Actin-binding cytoskeleton protein, fila 96.69
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 96.56
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 96.47
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 96.39
TIGR02962112 hdxy_isourate hydroxyisourate hydrolase. Members o 96.32
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 96.31
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 96.3
COG2373 1621 Large extracellular alpha-helical protein [General 96.15
KOG05181113 consensus Actin-binding cytoskeleton protein, fila 96.12
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 96.06
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 95.91
COG2373 1621 Large extracellular alpha-helical protein [General 95.78
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 95.74
PF1197497 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I 95.64
TIGR02962112 hdxy_isourate hydroxyisourate hydrolase. Members o 95.4
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 95.33
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 95.26
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 95.11
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 95.1
cd05822112 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) ca 95.09
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 94.83
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 94.82
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 94.77
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 94.74
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 94.71
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 94.7
PF10670215 DUF4198: Domain of unknown function (DUF4198) 94.69
PF1197497 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I 94.69
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 94.69
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 94.63
cd03460282 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz 94.59
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 94.58
TIGR02439285 catechol_proteo catechol 1,2-dioxygenase, proteoba 94.56
COG2351124 Transthyretin-like protein [General function predi 94.55
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 94.53
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 94.52
cd05821121 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa 94.49
cd03461277 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca 94.45
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 94.44
cd05469113 Transthyretin_like Transthyretin_like. This domain 94.4
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 94.4
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 94.38
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 94.14
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 94.07
PF10670215 DUF4198: Domain of unknown function (DUF4198) 94.02
smart00095121 TR_THY Transthyretin. 93.92
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 93.91
TIGR02439285 catechol_proteo catechol 1,2-dioxygenase, proteoba 93.84
PF00576112 Transthyretin: HIUase/Transthyretin family; InterP 93.83
cd03460282 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz 93.77
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 93.59
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 93.57
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 93.41
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 93.38
cd03461277 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca 93.37
KOG2649500 consensus Zinc carboxypeptidase [General function 93.23
TIGR00864 2740 PCC polycystin cation channel protein. Note: this 93.03
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 92.97
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 92.02
KOG3006132 consensus Transthyretin and related proteins [Lipi 91.77
PF00576112 Transthyretin: HIUase/Transthyretin family; InterP 91.02
cd05821121 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa 90.73
cd05469113 Transthyretin_like Transthyretin_like. This domain 90.55
PRK15235814 outer membrane fimbrial usher protein SefC; Provis 90.27
cd05822112 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) ca 90.25
PF0106080 DUF290: Transthyretin-like family; InterPro: IPR00 89.92
PF02369100 Big_1: Bacterial Ig-like domain (group 1); InterPr 89.86
smart00095121 TR_THY Transthyretin. 89.69
PF0106080 DUF290: Transthyretin-like family; InterPro: IPR00 89.59
COG2351124 Transthyretin-like protein [General function predi 88.76
COG3188835 FimD P pilus assembly protein, porin PapC [Cell mo 88.44
PF02369100 Big_1: Bacterial Ig-like domain (group 1); InterPr 88.37
cd03457188 intradiol_dioxygenase_like Intradiol dioxygenase s 88.14
cd03457188 intradiol_dioxygenase_like Intradiol dioxygenase s 87.48
cd00222187 CollagenBindB Collagen-binding protein B domain, m 87.47
smart0063492 BID_1 Bacterial Ig-like domain (group 1). 86.97
PF11589106 DUF3244: Domain of unknown function (DUF3244); Int 85.2
COG1470513 Predicted membrane protein [Function unknown] 85.0
PF10794131 DUF2606: Protein of unknown function (DUF2606); In 84.5
PRK15207842 long polar fimbrial outer membrane usher protein L 84.36
PRK15294845 putative fimbrial outer membrane usher protein Sth 83.8
COG5266264 CbiK ABC-type Co2+ transport system, periplasmic c 83.72
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 82.68
PRK15223836 pilin outer membrane usher protein SafC; Provision 82.31
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 81.4
PRK15298848 fimbrial outer membrane usher protein StiC; Provis 81.29
PF0119097 Pollen_Ole_e_I: Pollen proteins Ole e I like; Inte 80.69
cd00222187 CollagenBindB Collagen-binding protein B domain, m 80.54
COG5266264 CbiK ABC-type Co2+ transport system, periplasmic c 80.32
KOG4802516 consensus Adhesion-type protein [Extracellular str 80.07
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-218  Score=1866.35  Aligned_cols=1090  Identities=39%  Similarity=0.672  Sum_probs=992.9

Q ss_pred             ccchhhhhhhhhhhhcccCCceEEeecceeeeccccccccccCCCCCcccceEEEEEeCCCcEEEeEEecC-CcEEEeCC
Q 001065            3 SRDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAP-NGYYFIPV   81 (1167)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~v~gcgGfv~~~~~~~~~~~~sd~~i~~sgv~v~L~~~~G~~~~~t~t~~-nG~y~~~~   81 (1167)
                      +--|+..||++++..+.++.|+|+|||||||           ||++||||.++|+|+|++|.+|++|+|+| |||||||+
T Consensus         4 i~~~~vvlLI~ls~~a~~sed~VvgCgGfVk-----------Sd~eidyS~ievkL~Tk~G~lKd~tdcaPsNGYfmIPv   72 (1165)
T KOG1948|consen    4 ICHMGVVLLILLSLLAPGSEDNVVGCGGFVK-----------SDSEIDYSQIEVKLLTKEGHLKDETDCAPSNGYFMIPV   72 (1165)
T ss_pred             eeeehhhhhhhhhcccCCceeeEEeccceee-----------cCCccceeeEEEEEEeeccccccccccCCCCceEEEEE
Confidence            3447788888999999999999999999994           89999999999999999999999999999 99999999


Q ss_pred             CCCccEEEEEEcCCCcccCCceEEEEEcC--CCcCCcceeeEEEeCcEEEEEEEeccCCccccCCCCCCcceEEEEEeCC
Q 001065           82 YDKGSFVIKVNGPEGWSWNPDKVAVTVDD--TGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS  159 (1167)
Q Consensus        82 l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~--~~~s~~~dinf~~~g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~  159 (1167)
                      |++|+|.|++++|.||+|+|++++++||+  |.|+++.||||.|+||+|+|+|..+.        +.+++||.|+|++..
T Consensus        73 YdKGdyiLkIspP~GwsfePd~Vel~vDGktd~Cs~n~DinFhftGFsv~GkVlgaa--------ggGpagV~velrs~e  144 (1165)
T KOG1948|consen   73 YDKGDYILKISPPAGWSFEPDSVELKVDGKTDACSLNEDINFHFTGFSVRGKVLGAA--------GGGPAGVLVELRSQE  144 (1165)
T ss_pred             ecCCcEEEEecCCCCccccCceEEEEeccccccccCCCceEEEEeeeeEeeEEeecc--------CCCcccceeeccccc
Confidence            99999999999999999999999999996  79999999999999999999999873        479999999998775


Q ss_pred             CcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeEeecceEEEEccCCeeEeeeeeccceEEeeEEEeCCCceeceEE
Q 001065          160 GDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHI  239 (1167)
Q Consensus       160 g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v~~~~~~~~~~l~~~G~~isG~V~~~g~Pl~Ga~V  239 (1167)
                      + .++++.|+++|.|.|.+++||+|.|.++||.|++..++++.|++...+..+++.|.+.||++.|+|+++++|+.|+.+
T Consensus       145 ~-~iast~T~~~Gky~f~~iiPG~Yev~ashp~w~~~~ag~tvvev~~a~~~va~~f~VsGydl~gsv~s~s~P~~gv~~  223 (1165)
T KOG1948|consen  145 D-PIASTKTEDGGKYEFRNIIPGKYEVSASHPAWECISAGKTVVEVKNAPVVVAPNFKVSGYDLEGSVRSESMPFVGVVM  223 (1165)
T ss_pred             C-cceeeEecCCCeEEEEecCCCceEEeccCcceeEeecCcEEEEeCCCccccCCceEEEeeeeEEEEeccCCcccceEE
Confidence            4 489999999999999999999999999999999986777888888777778899999999999999999999999999


Q ss_pred             EEEECCCCcccCCCCCCC-cc----c-ccceeeEEEeCCCCeEEEcccCCccEEEEEEEecCCeEEEecCceEEEEEecc
Q 001065          240 YLYSDDVGKVDCPQGSGN-AL----G-ERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQ  313 (1167)
Q Consensus       240 ~L~~~~~~~~~c~~g~~~-~~----~-~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~  313 (1167)
                      +|+..+.....|.+...+ +|    . ....+|.+++|++|+|.|.++|+|.|.|.+.|.+++..|+++|..++++|+++
T Consensus       224 ~l~s~~v~~~dvpkc~gs~ap~n~~a~e~vslc~~vsd~~G~fsfksvPsGkY~l~a~y~ge~~~fdvSP~~l~v~Vehd  303 (1165)
T KOG1948|consen  224 TLYSTSVIDLDVPKCVGSEAPLNVPATENVSLCIGVSDPRGRFSFKSVPSGKYYLAASYVGEPKSFDVSPNPLKVVVEHD  303 (1165)
T ss_pred             EEEEcccccccCCccccCCCCCCCCcccceeeEEEEEcCCceEEEEEcCCCCEEEEEEecCCceEEEeCCCceeEEEecc
Confidence            999987666665554333 21    1 22568999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeeeEEeceEEEEEEEeC-CCCceeceEEEEcceeeeEeCCCceEEECc-CCCccEEEEEEeccccccceeeEEEc
Q 001065          314 HVTVPEKFQVTGFSVGGRVVDE-NDMGVEGVKILVDGHERSITDRDGYYKLDQ-VTSNRYTIEAVKVHYKFNKLKEYMVL  391 (1167)
Q Consensus       314 ~~~l~~~f~~~g~sV~G~V~d~-~G~pl~Ga~V~l~G~~~~~TD~dG~y~~~~-L~pG~Y~I~~~~~~y~~~~~~~v~v~  391 (1167)
                      ++++++.|+++||+++|||++. +|.|++||+|.+||+..+.||++|+|+++| +..|+|+|+++++||+|++.. +++.
T Consensus       304 ~lqi~~ef~vtgfSvtGRVl~g~~g~~l~gvvvlvngk~~~kTdaqGyykLen~~t~gtytI~a~kehlqFstv~-~kv~  382 (1165)
T KOG1948|consen  304 HLQIASEFRVTGFSVTGRVLVGSKGLPLSGVVVLVNGKSGGKTDAQGYYKLENLKTDGTYTITAKKEHLQFSTVH-AKVK  382 (1165)
T ss_pred             ceeccceeEEEEEEeeeeEEeCCCCCCccceEEEEcCcccceEcccceEEeeeeeccCcEEEEEeccceeeeeEE-EEec
Confidence            9999999999999999999987 899999999999999999999999999999 789999999999999999995 9999


Q ss_pred             CCcceeceEEEEeeEEEEEEEEcCCcccEEEEEEcCCCcccceeeeecCC-eEEEEEEcCeeEEEEEEeecCCCCCCeee
Q 001065          392 PNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNN-GNFCFEVPPGEYRLSAMAATPESSSGILF  470 (1167)
Q Consensus       392 p~~~~i~dI~~~~~~V~G~V~~~~~~~~a~VtL~~~~~~~~~~~~~Td~~-G~f~f~L~pG~Y~v~~~~~~~~~~~G~~~  470 (1167)
                      |++++++||++..|+|||+|+...  .++.+.|+....+.+....+|++. |+|||.++||.|+|+++.++++.++|++|
T Consensus       383 pntasLpdI~a~~fdiCGqV~~~~--k~~nv~lt~~~s~~k~s~~~t~etdGsfCf~vppG~ytievl~~ta~~aagl~l  460 (1165)
T KOG1948|consen  383 PNTASLPDITAQKFDICGQVEKSE--KGVNVKLTFTRSDDKRSLEITPETDGSFCFPVPPGLYTIEVLDKTASGAAGLLL  460 (1165)
T ss_pred             CCccccccccccceeeeeEEEEcc--ccceeEEEEccCccccccccccccCCceeEEcCCccEEEEEeccCcccccccEe
Confidence            999999999999999999998655  445555553322222334444544 99999999999999999999999999999


Q ss_pred             eCceEEEEE-cCcccceEEEEeeeEEEEEEeeccCCCCceEEEEEEcCcccccCCcceeEEEecCCCcEEEcccCCccEE
Q 001065          471 LPPYADVVV-KSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYR  549 (1167)
Q Consensus       471 ~p~~~~V~V-~~p~~~I~f~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~  549 (1167)
                      .|..++++| +.|+++|.|+|++++++|.|+|++.|+ .+.|+|+....+   ....++++.+|..+.|+|+|++||+|+
T Consensus       461 ~P~~~~veV~~~pv~ni~Fsqfranv~g~lsCl~tCg-~a~vtlq~la~G---q~~~~~vk~td~~~~ftF~nilPGkY~  536 (1165)
T KOG1948|consen  461 TPRLLEVEVLKNPVTNIRFSQFRANVNGHLSCLGTCG-TATVTLQLLAAG---QTLVRSVKGTDESSVFTFENILPGKYS  536 (1165)
T ss_pred             eeeeeeEEeecCcccceehhhhhhccceEEEeccCCC-ceeEEEEecccC---CcceeeEEEEeeccEEEeeccCCcceE
Confidence            999999999 689999999999999999999999999 799999877322   124566778999999999999999999


Q ss_pred             EEEEeecccccccCCCceEEeeeEEEEEecCCccceeEEEeeeEEEEEecccEEEEEEecCCCeee---EEEccceeeEE
Q 001065          550 LEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVP---LKVKKGSQHIC  626 (1167)
Q Consensus       550 v~~~~~~~~~~~~~~~~cw~~~~~~v~V~~~~~~~~~F~q~Gy~~~i~~sh~~~~~~~~~~~~~~~---~~l~kG~~~~c  626 (1167)
                      ++++        |+++|||++++++++|.+++.++++|+|+|||++|++||+++++|+|++|+..+   +++.||.|+||
T Consensus       537 ~~i~--------d~~~wCwe~ss~~lnV~~~d~~aieFvqkGy~~~iisSH~a~~e~~h~dg~~en~~~lki~kgvn~iC  608 (1165)
T KOG1948|consen  537 ARID--------DNGRWCWEKSSMTLNVEQSDTQAIEFVQKGYAAQIISSHPAEIEWSHADGKQENGKTLKIGKGVNSIC  608 (1165)
T ss_pred             EEec--------cCCCceeecceEEEEeecccccccceeeccEEEEEEecCceeeEEecCCCCCCCcceEEecCcceEEE
Confidence            9998        488999999999999999999999999999999999999999999999987655   99999999999


Q ss_pred             ecCCceEEEEeeccceEeCCCcEEEeCCCCceeEEEeEeeEEEEEEEEeecCCCccccCCccEEEEEecCCCceeecccc
Q 001065          627 VESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTA  706 (1167)
Q Consensus       627 ~~~~G~y~~~~~~sc~~f~~~~~~~~t~~~~~i~l~~~~~~~~G~i~~~~~~~~~~~~~~~~~~v~~~~~~g~~i~~~~~  706 (1167)
                      +++||.|.+.+ .+||.|+.+++++++..+.+.+++++..+++|.|.++..+... ...++++++++++..+.+|+.   
T Consensus       609 v~kpGs~~~~~-~sc~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~-~s~~~k~v~e~~~~k~evit~---  683 (1165)
T KOG1948|consen  609 VPKPGSYDVSL-GSCYTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAA-VSIREKFVVEIQDIKSEVITR---  683 (1165)
T ss_pred             ccCCccceeec-cceeecccCCceeecCCCcchHhHhhhhhhccceeeeeccccc-ccchhhhhhhhhhhcccccCc---
Confidence            99999999987 9999999999999999999999999999999999887755321 255678899999999888843   


Q ss_pred             cccCCCCCCCCceeEEEEEecCCCCeEEEEecCCCCCCcceeeeeceeEEEEEeCCCcccccceeeeeeceEEeccccCC
Q 001065          707 TLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPP  786 (1167)
Q Consensus       707 ~~~~~~~~~~~~~~y~~~~~a~~g~~~~v~P~s~~~~~~~~llf~p~~~~v~v~~~~c~~~~~~f~~~~G~~i~G~v~p~  786 (1167)
                      .++..+-| ++++.|+|.+||++||+++|+|++      |.|||||+++++.|+++ |+..+++|.+++|+||+|+|+|+
T Consensus       684 ~a~~~avD-~G~f~yey~twas~gekl~ivPss------k~lLFyP~s~eavvS~d-C~~~a~~f~g~rGLfL~Gsi~Pa  755 (1165)
T KOG1948|consen  684 EAQVPAVD-NGRFTYEYPTWASSGEKLVIVPSS------KLLLFYPTSKEAVVSGD-CIENAVKFNGFRGLFLDGSIKPA  755 (1165)
T ss_pred             cccccccc-CCcceEechhhcCCCceEEEeecc------ceeeecCCceEEEEecc-cchhheeecceeeEEEcceeccC
Confidence            33332222 278999999999999999999998      89999999999999876 99999999999999999999999


Q ss_pred             CCCeEEEEEeccchhhhhcccCceeEEEEeCCCceEEeCCCCCCceEEEEEcCCCeEEeeeC--CceeEEEeeeEEEEEE
Q 001065          787 LSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG--PNSFSCQKLSQISVRI  864 (1167)
Q Consensus       787 l~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~~L~~~~~y~i~a~k~gy~~~~~~--~~~f~~~~l~~i~~~v  864 (1167)
                      |+||+|+|+.++++        ++.+++.|+++|.|++|||+.+..|.++|+||||+|++.+  +++|++++|++|++++
T Consensus       756 lega~Ikis~kkds--------~~~Iev~T~~~Gafk~GPl~~dl~yd~tA~kegyvft~~~~t~~sfqa~kl~~vsv~v  827 (1165)
T KOG1948|consen  756 LEGAVIKISLKKDS--------DVVIEVITNKDGAFKIGPLKRDLDYDITATKEGYVFTPTSPTPGSFQAVKLSQVSVKV  827 (1165)
T ss_pred             CCCcEEEEEecCCC--------ceeEEEEEcCCCcEEecccccccccceeeccCceEEecCCCCccceeeeeeeEEEEEE
Confidence            99999999999886        7899999999999999999999999999999999999997  4899999999999999


Q ss_pred             EccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecCCcEEEEEEEEEee
Q 001065          865 YSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRV  944 (1167)
Q Consensus       865 ~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~  944 (1167)
                      +|++  ++||+||||||||+++||+|++|+++|.++|++|+||+||||||||||+|+|+++||+|+|||+.+++|+|+|+
T Consensus       828 kdea--~q~LpgvLLSLsGg~~yRsNlvtgdng~~nf~sLsPgqyylRpmlKEykFePst~mIevkeGq~~~vvl~gkRv  905 (1165)
T KOG1948|consen  828 KDEA--TQPLPGVLLSLSGGKDYRSNLVTGDNGHKNFVSLSPGQYYLRPMLKEYKFEPSTSMIEVKEGQHENVVLKGKRV  905 (1165)
T ss_pred             eccC--CCcCCcEEEEEecCcchhhccccCCCceeEEeecCcchhhhhhHHHhcCcCCCceeEEeccCceEEEEEEEEEE
Confidence            9996  69999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEcCCCCccCccEEEEEeCC-CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEE
Q 001065          945 AYSATGTITLLSGQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVK 1023 (1167)
Q Consensus       945 ~~s~~G~V~~~~g~p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~ 1023 (1167)
                      ||||||+|.+|||+|++||.+||++++ ..++||+|||+||+||||||+|||.|.|++++..  ++++|||++|++++|+
T Consensus       906 AySayGtvssLsGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~--~n~~iers~P~s~tv~  983 (1165)
T KOG1948|consen  906 AYSAYGTVSSLSGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYA--DNSPIERSFPRSFTVS  983 (1165)
T ss_pred             EEEeeeehhhccCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeecc--CCCcccccCCceEEEE
Confidence            999999999999999999999999998 7899999999999999999999999999999875  4899999999999999


Q ss_pred             ecCcccccceEEEEecCCeEEEEEEEEecccccccceeEEEEEecCCC-CceEEEEeeCCceeEEeccCCCC--cEEEEE
Q 001065         1024 VGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDT-SKVESVISLPMSNFFQVKDLPKG--KHLLQL 1100 (1167)
Q Consensus      1024 v~~~d~~~~~f~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~-~~v~~~~~~~~~~~f~~~~l~~~--~y~v~l 1100 (1167)
                      |+++||+|+||++|++++++||+|+|.++. .|++++++|.+|+..+. ++|++ +..++ .+++||+||++  +|+|+|
T Consensus       984 vgneDv~glnf~af~q~kttdit~~V~~~~-ne~l~sl~vv~yKs~nddspv~s-v~~gq-l~~ffp~l~~dg~~yvV~l 1060 (1165)
T KOG1948|consen  984 VGNEDVKGLNFMAFIQAKTTDITVEVGMDT-NEELQSLRVVIYKSNNDDSPVAS-VVAGQ-LLHFFPNLPRDGVEYVVRL 1060 (1165)
T ss_pred             ecccccCCceEEEEeccceEEEEEEEcccc-cccccceEEEEEecCCCCCcceE-Eeccc-eeeeccccCCCCceEEEEE
Confidence            999999999999999999999999999986 47778999988888665 99999 55555 78888888886  799999


Q ss_pred             EecCCCcceeeeeeeEEEEEEecc-eEEEEeeeeeeeeccccccCCCCCchhhhHHHhhhe
Q 001065         1101 RSSLPSSTHRFESEIIEVDLEKNA-QIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIG 1160 (1167)
Q Consensus      1101 ~s~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1160 (1167)
                      +|+||.++|+|+  ++  .|.|.. ++|+ .|.|.|+||..++|++|++++||.+.++|+.
T Consensus      1061 ~Stlp~~~y~yk--lp--~fva~~~~k~a-~l~f~p~rra~eaDi~q~s~~al~l~~lval 1116 (1165)
T KOG1948|consen 1061 ESTLPPQAYAYK--LP--RFVADQAMKVA-RLPFTPSRRANEADISQGSFLALPLFVLVAL 1116 (1165)
T ss_pred             eccCCchheeee--cc--EEEeecceEEE-EEEeCccccccccccccCcEehhHHHHHHHH
Confidence            999999999994  55  788877 8899 8999999999999999999977776666554

>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only] Back     alignment and domain information
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton] Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>COG2373 Large extracellular alpha-helical protein [General function prediction only] Back     alignment and domain information
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton] Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG2373 Large extracellular alpha-helical protein [General function prediction only] Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [] Back     alignment and domain information
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>PF10670 DUF4198: Domain of unknown function (DUF4198) Back     alignment and domain information
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [] Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial Back     alignment and domain information
>COG2351 Transthyretin-like protein [General function prediction only] Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates Back     alignment and domain information
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>cd05469 Transthyretin_like Transthyretin_like Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>PF10670 DUF4198: Domain of unknown function (DUF4198) Back     alignment and domain information
>smart00095 TR_THY Transthyretin Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial Back     alignment and domain information
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain Back     alignment and domain information
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates Back     alignment and domain information
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only] Back     alignment and domain information
>TIGR00864 PCC polycystin cation channel protein Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain Back     alignment and domain information
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates Back     alignment and domain information
>cd05469 Transthyretin_like Transthyretin_like Back     alignment and domain information
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional Back     alignment and domain information
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) Back     alignment and domain information
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 [] Back     alignment and domain information
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins Back     alignment and domain information
>smart00095 TR_THY Transthyretin Back     alignment and domain information
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 [] Back     alignment and domain information
>COG2351 Transthyretin-like protein [General function prediction only] Back     alignment and domain information
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins Back     alignment and domain information
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup Back     alignment and domain information
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup Back     alignment and domain information
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4) Back     alignment and domain information
>smart00634 BID_1 Bacterial Ig-like domain (group 1) Back     alignment and domain information
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function Back     alignment and domain information
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional Back     alignment and domain information
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional Back     alignment and domain information
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>PRK15223 pilin outer membrane usher protein SafC; Provisional Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional Back     alignment and domain information
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms Back     alignment and domain information
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4) Back     alignment and domain information
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4802 consensus Adhesion-type protein [Extracellular structures] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1167
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
2pz4_A239 Protein GBS052; SPAB, GRAM-positive pilins, adhesi 3e-06
3k2m_C101 Monobody HA4; engineered binding protein, antibody 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.0 bits (147), Expect = 2e-09
 Identities = 84/635 (13%), Positives = 180/635 (28%), Gaps = 193/635 (30%)

Query: 169 SSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG-FENGEVDDIFFAPGYEIRGLV 227
           + E  Y +K+I+       A   N   + +   ++        E+D I            
Sbjct: 11  TGEHQYQYKDILS--VFEDAFVDNF--DCKDVQDMPKSILSKEEIDHI------------ 54

Query: 228 VAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSV------ 281
           +   + + G    L+                + ++      V   + KF+   +      
Sbjct: 55  IMSKDAVSGTL-RLF-------WTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQ 104

Query: 282 PCGQYELVPHYKGENTVFDVSPSLVSMSV-RHQHVTV---------PEKFQVTGFSVGG- 330
           P     +    +  + +++ +      +V R Q             P K  V    V G 
Sbjct: 105 PSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGS 161

Query: 331 -------------RVVDENDMGVEGVKILVDGHERSITDR-----DGYYKL--------D 364
                        +V  + D  +  + +    +  S            Y++        D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 365 QVTSNRYTIEAVKVHYK-FNKLKEY----MVLPNMASIADIKAISYDI-C---------G 409
             ++ +  I +++   +   K K Y    +VL N+ +     A  +++ C          
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQ 276

Query: 410 VVRTVGSGNKVKVALTH--------------------GPDKVKPQVKQTDNNGNFCFEVP 449
           V   + +     ++L H                     P  +  +V  T+          
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---------- 326

Query: 450 P------GE--------------YRLSAMAATPESSSGILFLPP------YADVVVKSPL 483
           P       E                   +    ESS  +  L P      +  + V  P 
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPS 384

Query: 484 LNIEFSQALVNVLGNVACKERCGPLVTVTLMR--LGQKHYDGTEKKTVSLTD-------- 533
            +I  +  L  +  +V   +    +V   L +  L +K      + T+S+          
Sbjct: 385 AHIP-TILLSLIWFDV--IKSDVMVVVNKLHKYSLVEKQPK---ESTISIPSIYLELKVK 438

Query: 534 -DSDQFLFRDVLPGKYRLEVKRTSREAS-SMEDN-WCWEQSFIG--VDVGTNDVKGVEFV 588
            +++  L R ++   Y +     S +      D  +      IG  +    +  +   F 
Sbjct: 439 LENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHLKNIEHPERMTLF- 493

Query: 589 QKGY----WLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNL-----HFVN 639
           +  +    +L     HD  A+       +   ++K    +IC   P    L      F+ 
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553

Query: 640 PC--VFFGSP---VLKMDTSNP-SPIYLKGEKYQL 668
                   S    +L++        I+ +  K Q+
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHK-QV 587
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1167
2pz4_A239 Protein GBS052; SPAB, GRAM-positive pilins, adhesi 99.2
2pz4_A239 Protein GBS052; SPAB, GRAM-positive pilins, adhesi 99.2
3kpt_A355 Collagen adhesion protein; intramolecular amide bo 99.01
3kpt_A355 Collagen adhesion protein; intramolecular amide bo 98.97
2x9x_A444 RRGB, cell WALL surface anchor family protein; cel 98.96
2x9x_A444 RRGB, cell WALL surface anchor family protein; cel 98.91
2xtl_A452 Cell WALL surface anchor family protein; GRAM-posi 98.82
1cwv_A492 Invasin; integrin-binding protein, INV gene, struc 98.73
2y1v_A605 RRGB, cell WALL surface anchor family protein; str 98.67
2y1v_A605 RRGB, cell WALL surface anchor family protein; str 98.61
1cwv_A492 Invasin; integrin-binding protein, INV gene, struc 98.41
2xtl_A452 Cell WALL surface anchor family protein; GRAM-posi 98.36
3irp_X429 URO-adherence factor A; DEV-IGG fold, cell WALL, h 98.32
3tkv_A414 FDEC fragment B, attaching and effacing protein, p 98.31
3tkv_A414 FDEC fragment B, attaching and effacing protein, p 98.26
1d2p_A373 Collagen adhesin, CNA; IGG, IGSF, mscramm, structu 98.12
3irp_X429 URO-adherence factor A; DEV-IGG fold, cell WALL, h 97.9
2x5p_A121 FBA2, fibronectin binding protein; protein binding 97.88
2x5p_A121 FBA2, fibronectin binding protein; protein binding 97.69
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.67
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 97.64
1d2p_A373 Collagen adhesin, CNA; IGG, IGSF, mscramm, structu 97.53
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 97.51
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 97.47
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 97.45
3qdh_A290 Fimbrial structural subunit; isopeptide bonds, act 97.28
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 97.26
2hr0_A645 Complement C3 beta chain; complement component C3B 97.19
3hr6_A436 SPAA, putative surface-anchored fimbrial subunit; 97.17
3pf2_A319 Cell WALL surface anchor family protein; pilus sha 97.01
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.0
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 96.83
3uxf_A488 Fimbrial subunit type 1; adhesin, isopeptide, GRAM 96.83
2ww8_A893 RRGA, cell WALL surface anchor family protein; IGG 96.65
3pf2_A319 Cell WALL surface anchor family protein; pilus sha 96.62
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 96.55
3qec_A150 Putative carbohydrate binding protein; suramin bin 96.51
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 96.39
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 96.37
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 96.28
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 96.22
3t1w_A375 Four-domain fibronectin fragment; human fibronecti 96.05
3hr6_A436 SPAA, putative surface-anchored fimbrial subunit; 95.88
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 95.85
3qdh_A290 Fimbrial structural subunit; isopeptide bonds, act 95.85
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 95.81
3r8q_A290 Fibronectin; heparin, FNIII, heparin binding, cell 95.74
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 95.65
2hr0_A645 Complement C3 beta chain; complement component C3B 95.49
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 95.48
2pn5_A1325 TEP1R, thioester-containing protein I; FULL-length 95.42
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 95.4
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 95.26
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 95.25
3t1w_A375 Four-domain fibronectin fragment; human fibronecti 95.17
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 95.13
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 95.1
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 94.95
3qva_A116 Transthyretin-like protein; transthyretin-related 94.87
3uxf_A488 Fimbrial subunit type 1; adhesin, isopeptide, GRAM 94.84
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 94.82
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 94.8
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 94.77
3n9t_A290 PNPC; phospholipid binds, N-terminal helix tunnel, 94.68
3hhy_A280 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, 94.67
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 94.63
3t63_A200 3,4-PCD, protocatechuate 3,4-dioxygenase alpha cha 94.56
1fnf_A368 Fibronectin; RGD, extracellular matrix, cell adhes 94.55
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 94.55
3hrz_A627 Cobra venom factor; serine protease, glycosilated, 94.42
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 94.39
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 94.37
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 94.25
1tdq_A283 Tenascin-R; extracellular matrix, lecticans, tenas 94.22
2xi9_A 457 Ancillary protein 1; cell adhesion, GRAM positive 94.17
2g2n_A114 Transthyretin-like protein; transthyretin-related 94.12
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 94.1
3t63_A200 3,4-PCD, protocatechuate 3,4-dioxygenase alpha cha 94.06
3e8v_A82 Possible transglutaminase-family protein; structur 94.06
2xi9_A457 Ancillary protein 1; cell adhesion, GRAM positive 94.03
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 93.99
3o5u_A257 Chlorocatechol 1,2-dioxygenase; beta barrel,oxidor 93.98
3hhy_A280 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, 93.82
1f86_A115 Transthyretin Thr119Met variant; protein stability 93.68
1fnf_A368 Fibronectin; RGD, extracellular matrix, cell adhes 93.62
3qec_A150 Putative carbohydrate binding protein; suramin bin 93.52
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 93.4
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 93.36
3n9t_A290 PNPC; phospholipid binds, N-terminal helix tunnel, 93.33
3prx_B 1642 Cobra venom factor; immune system, complement, imm 93.28
3pdd_A190 Glycoside hydrolase, family 9; CBHA, beta-sandwich 93.2
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 93.2
2h0e_A121 Transthyretin-like protein PUCM; beta sandwitch, h 93.17
3pdd_A190 Glycoside hydrolase, family 9; CBHA, beta-sandwich 93.15
1wlh_A311 Gelation factor; ABP-120, filamin, immunoglobulin 93.14
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 93.06
1oo2_A119 Transthyretin; retinol-binding protein, tetramer, 93.02
2h4e_A127 Transthyretin; amyloid, sulfite, familial amyloido 92.9
1f86_A115 Transthyretin Thr119Met variant; protein stability 92.65
3e8v_A82 Possible transglutaminase-family protein; structur 92.49
3qva_A116 Transthyretin-like protein; transthyretin-related 92.49
4fxk_A656 Complement C4 beta chain; immune system, proteolyt 92.48
2gee_A203 Hypothetical protein; fibronectin, EIIIB, cancer, 92.39
2x9z_A262 RRGB, cell WALL surface anchor family protein; cel 92.38
2x9z_A262 RRGB, cell WALL surface anchor family protein; cel 92.38
3iwv_A138 5-hydroxyisourate hydrolase; transthyretin, molecu 92.33
3o5u_A257 Chlorocatechol 1,2-dioxygenase; beta barrel,oxidor 92.32
4ank_A147 Transthyretin; hormone binding protein, thyroxine 91.95
2h4e_A127 Transthyretin; amyloid, sulfite, familial amyloido 91.82
1qr4_A186 Protein (tenascin); fibronectin type-III, heparin, 91.61
3hrz_A627 Cobra venom factor; serine protease, glycosilated, 91.39
2g2n_A114 Transthyretin-like protein; transthyretin-related 91.38
1qfh_A212 Protein (gelation factor); actin binding protein, 90.97
1qr4_A186 Protein (tenascin); fibronectin type-III, heparin, 90.81
1oo2_A119 Transthyretin; retinol-binding protein, tetramer, 90.78
1tdq_A283 Tenascin-R; extracellular matrix, lecticans, tenas 90.38
4ank_A147 Transthyretin; hormone binding protein, thyroxine 89.2
1d2o_A187 Collagen adhesin, CNA; beta sandwich, IGG, IGSF, s 88.62
2h0e_A121 Transthyretin-like protein PUCM; beta sandwitch, h 88.22
1wlh_A311 Gelation factor; ABP-120, filamin, immunoglobulin 88.06
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 87.98
2k7p_A188 Filamin-A; IG-like, ABP-280, actin binding protein 87.94
3iwv_A138 5-hydroxyisourate hydrolase; transthyretin, molecu 87.72
2gee_A203 Hypothetical protein; fibronectin, EIIIB, cancer, 87.55
3tes_A98 Tencon; fibronectin type III domain, FN3, consensu 87.0
3prx_B 1642 Cobra venom factor; immune system, complement, imm 86.64
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 86.47
2vkw_A209 Neural cell adhesion molecule 1,140 kDa isoform; a 86.07
3lpw_A197 A77-A78 domain from titin; intracellular FNIII-tan 85.87
2k7p_A188 Filamin-A; IG-like, ABP-280, actin binding protein 85.25
3lpw_A197 A77-A78 domain from titin; intracellular FNIII-tan 85.03
3r8q_A290 Fibronectin; heparin, FNIII, heparin binding, cell 84.34
1qfh_A212 Protein (gelation factor); actin binding protein, 84.33
1f00_I282 Intimin; immunoglobulin-like fold, C-type lectin-l 84.28
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 83.95
4fxt_A202 Uncharacterized protein; PF12866 family, DUF3823, 83.79
1d2o_A187 Collagen adhesin, CNA; beta sandwich, IGG, IGSF, s 82.85
2k7q_A191 Filamin-A; IG-like, ABP-280, actin binding protein 82.62
3p4l_A211 Neogenin; iron homeostasis, hemojuvelin receptor, 82.45
2ha1_A201 Fibronectin; beta sandwich, protein-protein comple 81.98
2j3s_A288 Filamin-A; cytoskeleton, phosphorylation, structur 81.52
3rfz_B843 Outer membrane usher protein, type 1 fimbrial SYN; 81.16
2kbg_A114 N-CAM 2, neural cell adhesion molecule 2; fibronec 80.65
1r6v_A671 Subtilisin-like serine protease; sandwich domain, 80.55
1zlg_A 680 Anosmin 1; insulin-like growth factor receptor Cys 80.44
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A Back     alignment and structure
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A Back     alignment and structure
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A Back     alignment and structure
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A Back     alignment and structure
>2xtl_A Cell WALL surface anchor family protein; GRAM-positive PILI protein, BP-2A 515 allele, immunoglobulin domains, structural protein; 1.75A {Streptococcus agalactiae} Back     alignment and structure
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3 Back     alignment and structure
>2y1v_A RRGB, cell WALL surface anchor family protein; structural protein, major pilin, pilus assembly; 2.39A {Streptococcus pneumoniae} PDB: 3rpk_A Back     alignment and structure
>2y1v_A RRGB, cell WALL surface anchor family protein; structural protein, major pilin, pilus assembly; 2.39A {Streptococcus pneumoniae} PDB: 3rpk_A Back     alignment and structure
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3 Back     alignment and structure
>2xtl_A Cell WALL surface anchor family protein; GRAM-positive PILI protein, BP-2A 515 allele, immunoglobulin domains, structural protein; 1.75A {Streptococcus agalactiae} Back     alignment and structure
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X Back     alignment and structure
>1d2p_A Collagen adhesin, CNA; IGG, IGSF, mscramm, structural protein; 2.50A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1 b.3.5.1 b.3.5.1 Back     alignment and structure
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X Back     alignment and structure
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes} Back     alignment and structure
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes} Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1d2p_A Collagen adhesin, CNA; IGG, IGSF, mscramm, structural protein; 2.50A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1 b.3.5.1 b.3.5.1 Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>3qdh_A Fimbrial structural subunit; isopeptide bonds, actinomyces type 2 fimbriae, CNAA/DEV-IGG CNAB/IGG-REV fold, cell ahdesion, pilin; 1.90A {Actinomyces naeslundii} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A* Back     alignment and structure
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* Back     alignment and structure
>3pf2_A Cell WALL surface anchor family protein; pilus shaft component, IGG-DEV fold, IGG-REV fold, CNA A TYP type, IG-like fold; 1.70A {Streptococcus agalactiae serogroup V} PDB: 3pg2_A Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>3uxf_A Fimbrial subunit type 1; adhesin, isopeptide, GRAM-positive, beta sandwich, surface, cell adhesion; 1.60A {Actinomyces oris} Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>3pf2_A Cell WALL surface anchor family protein; pilus shaft component, IGG-DEV fold, IGG-REV fold, CNA A TYP type, IG-like fold; 1.70A {Streptococcus agalactiae serogroup V} PDB: 3pg2_A Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B Back     alignment and structure
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>3qdh_A Fimbrial structural subunit; isopeptide bonds, actinomyces type 2 fimbriae, CNAA/DEV-IGG CNAB/IGG-REV fold, cell ahdesion, pilin; 1.90A {Actinomyces naeslundii} Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A* Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B Back     alignment and structure
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3uxf_A Fimbrial subunit type 1; adhesin, isopeptide, GRAM-positive, beta sandwich, surface, cell adhesion; 1.60A {Actinomyces oris} Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida} Back     alignment and structure
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A* Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ... Back     alignment and structure
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A* Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Back     alignment and structure
>2xi9_A Ancillary protein 1; cell adhesion, GRAM positive pilus, intramolecular isopeptid internal thioester; 1.90A {Streptococcus pyogenes} PDB: 2xic_A 2xid_A Back     alignment and structure
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ... Back     alignment and structure
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>2xi9_A Ancillary protein 1; cell adhesion, GRAM positive pilus, intramolecular isopeptid internal thioester; 1.90A {Streptococcus pyogenes} PDB: 2xic_A 2xid_A Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A* Back     alignment and structure
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A* Back     alignment and structure
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ... Back     alignment and structure
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida} Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A* Back     alignment and structure
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A Back     alignment and structure
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A* Back     alignment and structure
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A Back     alignment and structure
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ... Back     alignment and structure
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A* Back     alignment and structure
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Back     alignment and structure
>2x9z_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.30A {Streptococcus pneumoniae} Back     alignment and structure
>2x9z_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.30A {Streptococcus pneumoniae} Back     alignment and structure
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A Back     alignment and structure
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A* Back     alignment and structure
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens} Back     alignment and structure
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A Back     alignment and structure
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Back     alignment and structure
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A* Back     alignment and structure
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A Back     alignment and structure
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 Back     alignment and structure
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Back     alignment and structure
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A* Back     alignment and structure
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Back     alignment and structure
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens} Back     alignment and structure
>1d2o_A Collagen adhesin, CNA; beta sandwich, IGG, IGSF, structural protein; 2.00A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1 Back     alignment and structure
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A* Back     alignment and structure
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A Back     alignment and structure
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Back     alignment and structure
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Back     alignment and structure
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Back     alignment and structure
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Back     alignment and structure
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Back     alignment and structure
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 Back     alignment and structure
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>4fxt_A Uncharacterized protein; PF12866 family, DUF3823, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.77A {Bacteroides ovatus} Back     alignment and structure
>1d2o_A Collagen adhesin, CNA; beta sandwich, IGG, IGSF, structural protein; 2.00A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1 Back     alignment and structure
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Back     alignment and structure
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Back     alignment and structure
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A Back     alignment and structure
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus assembly, outer-membrane, cell adhesion-T protein-chaperone complex; 2.80A {Escherichia coli} PDB: 3ohn_A 1zdv_A Back     alignment and structure
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Back     alignment and structure
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Back     alignment and structure
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1167
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.62
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.6
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 98.51
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.43
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.38
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 98.13
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 98.09
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.76
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 95.73
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 95.6
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 95.49
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 95.41
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 95.27
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 94.95
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 94.83
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 94.8
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 94.75
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 94.64
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 94.61
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 93.83
d1cwva194 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 93.17
d1f86a_115 Transthyretin (synonym: prealbumin) {Human (Homo s 92.53
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 92.5
d1oo2a_116 Transthyretin (synonym: prealbumin) {Gilthead seab 91.1
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 90.73
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 90.39
d2vkwa293 Neural cell adhesion molecule 1, NCAM {Human (Homo 89.89
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 89.19
d1f86a_115 Transthyretin (synonym: prealbumin) {Human (Homo s 88.91
d1f00i195 Intimin {Escherichia coli [TaxId: 562]} 88.39
d1cwva296 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 88.09
d1cwva194 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 87.55
d1oo2a_116 Transthyretin (synonym: prealbumin) {Gilthead seab 87.21
d1cwva296 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 86.8
d2cuha1102 Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} 83.77
d1cwva3103 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 82.75
d2dn7a194 Receptor-type tyrosine-protein phosphatase F, PTPR 81.95
d2fnba_95 Fibronectin, different Fn3 modules {Human (Homo sa 80.61
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Cna protein B-type domain
family: Cna protein B-type domain
domain: Transhydroxylase beta subunit, BthL, C-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=98.62  E-value=6.4e-08  Score=84.53  Aligned_cols=61  Identities=23%  Similarity=0.294  Sum_probs=51.9

Q ss_pred             CcEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeE
Q 001065          125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE  196 (1167)
Q Consensus       125 g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~  196 (1167)
                      .|.++|.+.+          |.|++||+|.|.+. ++.+..++||++|+|+|.+|+||+|.|++++.||...
T Consensus         2 n~~~~gi~~~----------G~~v~gA~V~L~~~-~~~v~~t~Td~~G~F~f~~l~~G~Y~l~is~~Gy~~~   62 (79)
T d1vlfn1           2 NYVTAGILVQ----------GDCFEGAKVVLKSG-GKEVASAETNFFGEFKFDALDNGEYTVEIDADGKSYS   62 (79)
T ss_dssp             EEEEEEEEET----------TEECTTCEEEEEET-TEEEEEEECCTTSEEEEEEECSEEEEEEEEETTEEEE
T ss_pred             CcEEeeEEEC----------CccccccEEEEECC-CCeEEeeEECCCCcEEEEecCCCCEEEEEEEecccce
Confidence            3556776653          58999999999874 5667889999999999999999999999999999854
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cwva2 b.1.14.1 (A:597-692) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]} Back     information, alignment and structure
>d1cwva2 b.1.14.1 (A:597-692) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cwva3 b.1.14.1 (A:693-795) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure