Citrus Sinensis ID: 001069

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------
MSASQTLGGPSRCGRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGEVAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIA
cccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHcc
cccccccccccHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEHHHcccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccEccEcccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHEccccccccccccccccccccHHHHHHHHHHHHHHcccEEEcHHHHEcccccccHHHHHHHHHHHHHccHHHHcccccccEEEHHHEEEcc
msasqtlggpsrcgravgpsLDKIIKNAAWRKHAHLVSSCKSVLDkldsisddpsqvssslfglsqndaglvLHPIFLALdsaypkvvEPALECAFKLFSLGlargeiegesdntnttsttntnqKNFNIIYKLIEAICKVcgigeepiELSVLRVLLSAvrspcllirgDCLLLIVRTCYNvylggssgtnqICAKSVLAQIMVIVFTRVeedsmnvphfktiSVSELLEFADkslnegssiHFCQNFINEvmgasegvfepAMLQLKQNvstklpngdtevatedekgevvkegekgegevakegengggrvpkegetgegqvpkegekgggqalkegekgegqapkegkegegqvlkddekgedrvvkegekgeggegqgnggaelggeskiredGFLLFKNICKLSMkfssqenpddlILLRGKILSLELLKVVtdnggpvwlSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNydcdvdspniFERIVNGLLktalgpppgsttslspaqdIAFRYESVKCLVSIIRSMGTWMDQQLRIgetylpkgsetdssidnnsipngedgsvpdyefhaevnpefsdaATLEQRRAYKIELQKGIslfnrkpskgieflinskkvgdspeEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSfnfkgmdfGHAIRFFLrgfrlpgeaQKIDRIMEKFAEryckcnpssftsadTAYVLAYSVIMLNTdahnsmvkdkmtkadfirnnrgiddgkdlpeeYLGVLYDQIVKNEikmnadssapeskqANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFksksgkseslyhavtdpgILRFMVEVCWGPMLAAFSVTldqsddklatnQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQllgegaptdasfltvsnveadektqksmgfpslkkkgtlqnpsvmavvrggsydsttvgvnspglvtpeQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSIselqsptdprvfslTKLVEIA
msasqtlggpsrcgravgPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGeiegesdntnttsttntnqkNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTrveedsmnvpHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVstklpngdtevatedekgevvkegekgegevakegengggrvpkegetgegqvpkegekgggqalkegekgegqapkegkegegqvlkddekgedrvvkegekgeggegqgnggaelggESKIREDGFLLFKNICKLSMKfssqenpdDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELqkgislfnrkpskgIEFLInskkvgdspEEVASFlknttglneTMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTkadfirnnrgiddgkdlpEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQfksksgkseslyHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEAdektqksmgfpslkkkgtlqnpSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSiselqsptdprvfsltklveia
MSASQTLGGPSRCGRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLdsisddpsqvsssLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDntnttsttntnqknfnIIYKLIEAICKVCGIGEEPIElsvlrvllsavrsPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDekgevvkegekgegevakegengggRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDekgedrvvkegekgeggegqgnggaelggeskIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTAlgpppgsttslspAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIA
*******************SLDKIIKNAAWRKHAHLVSSCKSVLD***************LFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARG*******************KNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAML**********************************************************************************************************************************EDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTAL*************QDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYL********************************************RRAYKIELQKGISLFNRKPSKGIEFLINS*********VASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEI*****************NKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQE**********SLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLT******************************MAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISEL******************
****************VGPSLDKI****************K*************************NDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEI*********************IIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSS******AKSVLAQIMVIVFTRV***************************************************************************************************************************************************************************************IREDGFLLFKNICKL*******************ILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVL***********MTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLL*********************FRYESVKCLVSIIRSMGT**************************************************************IELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGK********ANGLLIRRIQEQ*****GKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTD************************************************************************DQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSI*****PTDPRVFSLTKLVEIA
*************GRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSI*********SLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGEVAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALK**********************************************GGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALG********LSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMN**********ANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQF*********LYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIA
**********SRCGRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSIS******SSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIE***************QKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFA***********************************************************************************************************************************************************LGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLR******************************************SDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMN***************KLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAP*************************************************************EQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIA
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MSASQTLGGPSRCGRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGEVAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1166 2.2.26 [Sep-21-2011]
F4JSZ5 1687 Brefeldin A-inhibited gua yes no 0.671 0.464 0.790 0.0
F4JN05 1706 Brefeldin A-inhibited gua no no 0.692 0.473 0.731 0.0
Q9LPC5 1750 Brefeldin A-inhibited gua no no 0.916 0.610 0.509 0.0
Q9LZX8 1793 Brefeldin A-inhibited gua no no 0.680 0.442 0.592 0.0
Q7TSU1 1791 Brefeldin A-inhibited gua yes no 0.912 0.594 0.329 1e-158
A2A5R2 1792 Brefeldin A-inhibited gua yes no 0.907 0.590 0.328 1e-155
Q9Y6D5 1785 Brefeldin A-inhibited gua yes no 0.917 0.599 0.330 1e-154
D4A631 1846 Brefeldin A-inhibited gua no no 0.890 0.562 0.337 1e-154
G3X9K3 1846 Brefeldin A-inhibited gua no no 0.882 0.557 0.338 1e-154
Q9Y6D6 1849 Brefeldin A-inhibited gua no no 0.918 0.579 0.323 1e-153
>sp|F4JSZ5|BIG1_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Arabidopsis thaliana GN=BIG1 PE=2 SV=1 Back     alignment and function desciption
 Score = 1316 bits (3406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/796 (79%), Positives = 712/796 (89%), Gaps = 13/796 (1%)

Query: 371  KEGEKGEGGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKIL 430
            +EG      EG G         SKIREDGFLLFKN+CKLSMKFSSQEN DD IL+RGK L
Sbjct: 256  EEGASSTEDEGTG---------SKIREDGFLLFKNLCKLSMKFSSQENTDDQILVRGKTL 306

Query: 431  SLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKY 490
            SLELLKV+ DNGGP+WLS+ RFL AIKQ LCLSLLKNSALSVM++FQLQC+IF +LL KY
Sbjct: 307  SLELLKVIIDNGGPIWLSDERFLNAIKQLLCLSLLKNSALSVMSIFQLQCAIFTTLLRKY 366

Query: 491  RSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVD 550
            RSG+K+E+GIFFPMLVLRVLENVLQPSFVQKMTVL+LLE I  D  +I+D+FVN+DCDV+
Sbjct: 367  RSGMKSEVGIFFPMLVLRVLENVLQPSFVQKMTVLSLLENICHDPNLIIDIFVNFDCDVE 426

Query: 551  SPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRI 610
            SPNIFERIVNGLLKTALGPPPGS+T LSP QDI FR+ESVKCLVSII++MGTWMDQQL +
Sbjct: 427  SPNIFERIVNGLLKTALGPPPGSSTILSPVQDITFRHESVKCLVSIIKAMGTWMDQQLSV 486

Query: 611  GETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKG 670
            G++ LPK  E ++  +N+S  N EDG+  D++FH ++NPE SDAATLEQRRAYKIE QKG
Sbjct: 487  GDSLLPKSLENEAPANNHSNSNEEDGTTIDHDFHPDLNPESSDAATLEQRRAYKIERQKG 546

Query: 671  ISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHA 730
            ++LFNRKPSKGIEFLI+SKKVG+SP+EV SFL+NTTGLN TMIGDYLGERE+F +KVMHA
Sbjct: 547  VTLFNRKPSKGIEFLISSKKVGNSPDEVVSFLRNTTGLNATMIGDYLGEREDFPMKVMHA 606

Query: 731  YVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVL 790
            YVDSF+FK M+FG AIRFFLRGFRLPGEAQKIDRIMEKFAER+CKCNP+SF+SADTAYVL
Sbjct: 607  YVDSFDFKEMNFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERFCKCNPNSFSSADTAYVL 666

Query: 791  AYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNAD 850
            AYSVIMLNTDAHN MVK+KMTKADFIRNNRGIDDGKDLPEEYLG LYDQ+V NEIKM++D
Sbjct: 667  AYSVIMLNTDAHNIMVKEKMTKADFIRNNRGIDDGKDLPEEYLGALYDQVVINEIKMSSD 726

Query: 851  SSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLY 910
            SSAPES+Q+N LNKLLGLDGILNLV   QTEEKA+GANGLLI+ IQE+F+SKSGKSES Y
Sbjct: 727  SSAPESRQSNGLNKLLGLDGILNLVYWTQTEEKAVGANGLLIKDIQEKFRSKSGKSESAY 786

Query: 911  HAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQR 970
            H VTD  ILRFMVEV WGPMLAAFSVTLDQSDD+LA  +CL+GFR+AVHVTAVMGMQTQR
Sbjct: 787  HVVTDVAILRFMVEVSWGPMLAAFSVTLDQSDDRLAAVECLRGFRYAVHVTAVMGMQTQR 846

Query: 971  DAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQL 1030
            DAFVTS+AKFT LHCA DMKQKNVDAVKAIISIAIEDGNHLQ+AWEHILTCLSRIEHLQL
Sbjct: 847  DAFVTSMAKFTNLHCAGDMKQKNVDAVKAIISIAIEDGNHLQDAWEHILTCLSRIEHLQL 906

Query: 1031 LGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVN 1090
            LGEGAP+DAS+   ++ E +EK  K++GFP+LKKKG LQNP +MAVVRGGSYDS+T+G N
Sbjct: 907  LGEGAPSDASYF--ASTETEEK--KALGFPNLKKKGALQNPVMMAVVRGGSYDSSTIGPN 962

Query: 1091 SPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQS 1150
             PGLV  +QIN+FIANLNLLDQIG+F+LN+V+AHSQRL +EAIVAFVKALCKVS+SELQS
Sbjct: 963  MPGLVKQDQINNFIANLNLLDQIGSFQLNNVYAHSQRLKTEAIVAFVKALCKVSMSELQS 1022

Query: 1151 PTDPRVFSLTKLVEIA 1166
            PTDPRVFSLTKLVEIA
Sbjct: 1023 PTDPRVFSLTKLVEIA 1038
Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting.
Arabidopsis thaliana (taxid: 3702)
>sp|F4JN05|BIG4_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 4 OS=Arabidopsis thaliana GN=BIG4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPC5|BIG3_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Arabidopsis thaliana GN=BIG3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LZX8|BIG2_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Arabidopsis thaliana GN=BIG2 PE=2 SV=1 Back     alignment and function description
>sp|Q7TSU1|BIG2_RAT Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Rattus norvegicus GN=Arfgef2 PE=1 SV=1 Back     alignment and function description
>sp|A2A5R2|BIG2_MOUSE Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Mus musculus GN=Arfgef2 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y6D5|BIG2_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3 Back     alignment and function description
>sp|D4A631|BIG1_RAT Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Rattus norvegicus GN=Arfgef1 PE=1 SV=1 Back     alignment and function description
>sp|G3X9K3|BIG1_MOUSE Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Mus musculus GN=Arfgef1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6D6|BIG1_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Homo sapiens GN=ARFGEF1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1166
224104801 1729 predicted protein [Populus trichocarpa] 0.669 0.451 0.829 0.0
225428344 1702 PREDICTED: brefeldin A-inhibited guanine 0.683 0.468 0.825 0.0
356552456 1714 PREDICTED: brefeldin A-inhibited guanine 0.676 0.460 0.809 0.0
356501773 1721 PREDICTED: brefeldin A-inhibited guanine 0.662 0.449 0.830 0.0
449454321 1711 PREDICTED: brefeldin A-inhibited guanine 0.698 0.476 0.799 0.0
449517146 1711 PREDICTED: LOW QUALITY PROTEIN: brefeldi 0.698 0.476 0.798 0.0
356501775 1732 PREDICTED: brefeldin A-inhibited guanine 0.662 0.446 0.819 0.0
297744456 1611 unnamed protein product [Vitis vinifera] 0.654 0.473 0.810 0.0
334187256 1687 SEC7-like guanine nucleotide exchange fa 0.671 0.464 0.790 0.0
297797804 1694 guanine nucleotide exchange family prote 0.669 0.461 0.787 0.0
>gi|224104801|ref|XP_002313570.1| predicted protein [Populus trichocarpa] gi|222849978|gb|EEE87525.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1380 bits (3572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/813 (82%), Positives = 727/813 (89%), Gaps = 32/813 (3%)

Query: 385  GGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGP 444
             G+ +GG SKIREDGFLLF+NICKLSMKFSSQE PDD ILLRGKILSLELLKV+ DNGGP
Sbjct: 267  NGSAVGG-SKIREDGFLLFRNICKLSMKFSSQETPDDQILLRGKILSLELLKVIMDNGGP 325

Query: 445  VWLSN-------------------------------ARFLIAIKQFLCLSLLKNSALSVM 473
            +W SN                                RFL  IKQFLCLSL+KN+ALSVM
Sbjct: 326  IWRSNERQVTNTFFHSFLNSSHNAYIIISITFSSIWYRFLNTIKQFLCLSLIKNTALSVM 385

Query: 474  AVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQ 533
            A+FQLQCSIFM LL K+RSGLK EIGIFFPMLVLRVLENV QPSF+QKMTVLN ++KISQ
Sbjct: 386  AIFQLQCSIFMMLLVKFRSGLKEEIGIFFPMLVLRVLENVNQPSFLQKMTVLNFVDKISQ 445

Query: 534  DSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCL 593
            DSQIIVD+F+NYDCDVD+PN++ERIVNGLLKTALGPPPGSTT+LS  QDI FR+ESVKCL
Sbjct: 446  DSQIIVDIFINYDCDVDAPNLYERIVNGLLKTALGPPPGSTTTLSSVQDITFRHESVKCL 505

Query: 594  VSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSD 653
            VSIIRSMG WMDQ+LR G++YLPK SE+ +S +N+S  NGED    DY+ H+EVN E SD
Sbjct: 506  VSIIRSMGAWMDQKLRTGDSYLPKSSESSTSTENHSTLNGEDAGASDYDLHSEVNSEMSD 565

Query: 654  AATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMI 713
            AATLEQRRAYKIELQKGIS+FNRKPSKGIEFLIN+KKVG SPEEVA+FLKNTTGLNET+I
Sbjct: 566  AATLEQRRAYKIELQKGISIFNRKPSKGIEFLINAKKVGGSPEEVATFLKNTTGLNETVI 625

Query: 714  GDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERY 773
            GDYLGER+EF L+VMHAYVDSFNFK MDFG AIRFFLRGFRLPGEAQKIDRIMEKFAERY
Sbjct: 626  GDYLGERDEFCLRVMHAYVDSFNFKEMDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERY 685

Query: 774  CKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYL 833
            CKCNP+SFTSADTAYVLAYSVIMLNTDAHNSMVKDKM+KADFIRNNRGIDDGKDLPEEYL
Sbjct: 686  CKCNPNSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMSKADFIRNNRGIDDGKDLPEEYL 745

Query: 834  GVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIR 893
            G LYDQIVKNEIKM+ADSS P+SKQANSLNKLLGLDGILNLV GKQTEEKALGANGLLIR
Sbjct: 746  GTLYDQIVKNEIKMSADSSVPQSKQANSLNKLLGLDGILNLVTGKQTEEKALGANGLLIR 805

Query: 894  RIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQG 953
            RIQEQFK+KSGKS S+YH VTD  ILRFMVEVCWGPMLAAFSVTLDQSDD+LAT+QCLQG
Sbjct: 806  RIQEQFKAKSGKSGSIYHVVTDAAILRFMVEVCWGPMLAAFSVTLDQSDDRLATSQCLQG 865

Query: 954  FRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQE 1013
            F+ AVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMK KNVDAVKAIISIAIEDGN+LQ+
Sbjct: 866  FQCAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKLKNVDAVKAIISIAIEDGNNLQD 925

Query: 1014 AWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSV 1073
            AWEHILTCLSR+EHLQLLGEGAP DAS+LT SN E DEK  KSMG+PSLKKKGTLQNP+V
Sbjct: 926  AWEHILTCLSRVEHLQLLGEGAPPDASYLTPSNGETDEKALKSMGYPSLKKKGTLQNPAV 985

Query: 1074 MAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAI 1133
            MAVVRGGSYDSTTVG NSPGLVTP QI + I+NLNLLDQIGNFELNHVFA+SQRLNSEAI
Sbjct: 986  MAVVRGGSYDSTTVGANSPGLVTPGQIINLISNLNLLDQIGNFELNHVFANSQRLNSEAI 1045

Query: 1134 VAFVKALCKVSISELQSPTDPRVFSLTKLVEIA 1166
            VAFVKALCKVSISELQSPTDPRVFSLTK+VEIA
Sbjct: 1046 VAFVKALCKVSISELQSPTDPRVFSLTKIVEIA 1078

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428344|ref|XP_002280001.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552456|ref|XP_003544583.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356501773|ref|XP_003519698.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449454321|ref|XP_004144904.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Cucumis sativus] gi|449473000|ref|XP_004153755.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517146|ref|XP_004165607.1| PREDICTED: LOW QUALITY PROTEIN: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356501775|ref|XP_003519699.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|297744456|emb|CBI37718.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|334187256|ref|NP_195533.2| SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana] gi|449061809|sp|F4JSZ5.1|BIG1_ARATH RecName: Full=Brefeldin A-inhibited guanine nucleotide-exchange protein 1; Short=BIG1; AltName: Full=ARF guanine-nucleotide exchange factor BIG1 gi|332661492|gb|AEE86892.1| SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297797804|ref|XP_002866786.1| guanine nucleotide exchange family protein [Arabidopsis lyrata subsp. lyrata] gi|297312622|gb|EFH43045.1| guanine nucleotide exchange family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1166
TAIR|locus:2122143 1706 AT4G35380 "AT4G35380" [Arabido 0.660 0.451 0.741 0.0
TAIR|locus:2025502 1750 EDA10 "AT1G01960" [Arabidopsis 0.656 0.437 0.602 7.8e-287
TAIR|locus:2101906 1793 AT3G60860 "AT3G60860" [Arabido 0.659 0.428 0.595 2.6e-281
UNIPROTKB|Q10P53 1789 Os03g0246800 "Sec7 domain cont 0.652 0.425 0.602 3.3e-272
UNIPROTKB|A8J189 2150 CHLREDRAFT_148829 "SEC7/BIG-li 0.327 0.177 0.47 2.7e-162
UNIPROTKB|E1C293 1538 ARFGEF1 "Uncharacterized prote 0.532 0.403 0.408 2.7e-145
MGI|MGI:2442988 1846 Arfgef1 "ADP-ribosylation fact 0.536 0.338 0.4 3.6e-144
ZFIN|ZDB-GENE-030131-108 1849 arfgef1 "ADP-ribosylation fact 0.532 0.335 0.397 6.4e-144
RGD|1560793 1846 Arfgef1 "ADP-ribosylation fact 0.536 0.338 0.401 6.5e-144
ZFIN|ZDB-GENE-090312-50 1846 si:dkey-192i18.4 "si:dkey-192i 0.551 0.348 0.393 7.3e-143
TAIR|locus:2122143 AT4G35380 "AT4G35380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2947 (1042.5 bits), Expect = 0., Sum P(3) = 0.
 Identities = 574/774 (74%), Positives = 665/774 (85%)

Query:   395 IREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLI 454
             +R+D FLLFKN+CKLSM+FSS+EN DD I++RGK LSLELLKV+ DNGG VW +N  F+ 
Sbjct:   292 VRQDAFLLFKNLCKLSMRFSSKENNDDQIMVRGKTLSLELLKVIIDNGGSVWRTNESFIN 351

Query:   455 AIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVL 514
             A+KQ+LCLSLLKNSA+S+M++FQLQC+IFMSLLSK RS LKAEIGIFFPM+VLRVLENVL
Sbjct:   352 AVKQYLCLSLLKNSAVSIMSIFQLQCAIFMSLLSKLRSVLKAEIGIFFPMIVLRVLENVL 411

Query:   515 QPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTAXXXXXXXX 574
             QPS++QKMTVLNLL+K+SQD Q++VD+FVNYDCDV+S NI ERIVNGLLKTA        
Sbjct:   412 QPSYLQKMTVLNLLDKMSQDPQLMVDIFVNYDCDVESSNILERIVNGLLKTALGPPTGSS 471

Query:   575 XXXXXAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGE 634
                  AQD  FR +SVKCLV++ ++MG WMDQQL++ ET  PKGS+  +S+D+N+    E
Sbjct:   472 TTLSPAQDSTFRNDSVKCLVNLAKAMGNWMDQQLKVNETVWPKGSQVYASMDSNASQISE 531

Query:   635 -DGSVPDYEFHAEV-NPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVG 692
              +G++ D +   +  NPE  DA+ LEQRRAYKIELQKGISLFNRKPSKG+EFLI++KK+G
Sbjct:   532 LEGTISDCDSQPDTSNPEAYDASMLEQRRAYKIELQKGISLFNRKPSKGVEFLISTKKIG 591

Query:   693 DSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRG 752
              SPEEVASFL  T GLN T+IGDYLGER+E  LKVMHAYVDSFNF+  DF  AIRFFLRG
Sbjct:   592 SSPEEVASFLMKTAGLNGTVIGDYLGERDELPLKVMHAYVDSFNFEKKDFVEAIRFFLRG 651

Query:   753 FRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTK 812
             FRLPGEAQKIDRIMEKFAE Y KCNP SFTSADTAYVLAYSVIMLNTDAHN+MVKDKMTK
Sbjct:   652 FRLPGEAQKIDRIMEKFAEHYWKCNPGSFTSADTAYVLAYSVIMLNTDAHNNMVKDKMTK 711

Query:   813 ADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGIL 872
             ADF+RNNRGIDDGKDLPEEYLG LYD++VK EI+MN+D+ AP++KQ N LNKLLGLDGIL
Sbjct:   712 ADFVRNNRGIDDGKDLPEEYLGSLYDRVVKEEIRMNSDTLAPQNKQVNGLNKLLGLDGIL 771

Query:   873 NLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLA 932
             NLV   Q +EK  GANG LIR IQEQF++K  KSES+YH VTD  ILRF++EV WGPMLA
Sbjct:   772 NLVSWMQPDEKPHGANGRLIRDIQEQFQAKPEKSESVYHTVTDISILRFILEVSWGPMLA 831

Query:   933 AFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQK 992
             AFSVT+DQSDD+LAT+ CLQGFR+AVHVTAVMGMQTQRDAFVTS+AKFT LHCAADMKQK
Sbjct:   832 AFSVTIDQSDDRLATSLCLQGFRYAVHVTAVMGMQTQRDAFVTSMAKFTNLHCAADMKQK 891

Query:   993 NVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEK 1052
             NVDAVKAII+IAIEDGNHL  +WEHILTCLSRIEHLQLLGE +P++  ++     E D+K
Sbjct:   892 NVDAVKAIITIAIEDGNHLHGSWEHILTCLSRIEHLQLLGEVSPSEKRYVPTKKAEVDDK 951

Query:  1053 TQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQ 1112
               K++GFP+LKK+G+ QNPSVMAVVRGGSYDST++  + P LVTPEQI  FIANLNLLDQ
Sbjct:   952 --KALGFPNLKKRGSFQNPSVMAVVRGGSYDSTSLVKSVPKLVTPEQIKSFIANLNLLDQ 1009

Query:  1113 IGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIA 1166
             IGNFELNHV+A+SQRLNSEAIV+FVKALCKVS+SELQSPTDPRVFSLTKLVE A
Sbjct:  1010 IGNFELNHVYANSQRLNSEAIVSFVKALCKVSMSELQSPTDPRVFSLTKLVETA 1063
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS
GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA;IBA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=IBA
GO:0016192 "vesicle-mediated transport" evidence=IBA
GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA
GO:0050790 "regulation of catalytic activity" evidence=IBA
GO:0000041 "transition metal ion transport" evidence=RCA
TAIR|locus:2025502 EDA10 "AT1G01960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101906 AT3G60860 "AT3G60860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10P53 Os03g0246800 "Sec7 domain containing protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8J189 CHLREDRAFT_148829 "SEC7/BIG-like ARF-guanine nucleotide exchange factor" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|E1C293 ARFGEF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2442988 Arfgef1 "ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-108 arfgef1 "ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1560793 Arfgef1 "ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090312-50 si:dkey-192i18.4 "si:dkey-192i18.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4JSZ5BIG1_ARATHNo assigned EC number0.79020.67150.4641yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1166
PLN03076 1780 PLN03076, PLN03076, ARF guanine nucleotide exchang 0.0
pfam01369188 pfam01369, Sec7, Sec7 domain 8e-92
cd00171185 cd00171, Sec7, Sec7 domain; Domain named after the 5e-86
smart00222189 smart00222, Sec7, Sec7 domain 1e-78
COG5307 1024 COG5307, COG5307, SEC7 domain proteins [General fu 2e-73
PLN03076 1780 PLN03076, PLN03076, ARF guanine nucleotide exchang 5e-62
pfam12783166 pfam12783, Sec7_N, Guanine nucleotide exchange fac 2e-57
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 1e-07
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 1e-07
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 6e-07
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 1e-06
PHA03169413 PHA03169, PHA03169, hypothetical protein; Provisio 3e-06
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 5e-06
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 7e-06
PHA03169413 PHA03169, PHA03169, hypothetical protein; Provisio 1e-04
PHA03169413 PHA03169, PHA03169, hypothetical protein; Provisio 2e-04
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 9e-04
PHA03169413 PHA03169, PHA03169, hypothetical protein; Provisio 0.001
PHA03169413 PHA03169, PHA03169, hypothetical protein; Provisio 0.001
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information 
 Score = 1237 bits (3203), Expect = 0.0
 Identities = 511/802 (63%), Positives = 643/802 (80%), Gaps = 7/802 (0%)

Query: 372  EGEKGE--GGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKI 429
            EG KGE   GE + +   E+   +K+R D FL+F+ +CKLSMK   +E   D  L+RGKI
Sbjct: 319  EGRKGELADGEVEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKI 378

Query: 430  LSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSK 489
            L+LELLK++ +N G V+ ++ RFL AIKQ+LCLSLLKNSA S+M +FQL CSIF+SL+S+
Sbjct: 379  LALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSR 438

Query: 490  YRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDV 549
            +R+GLKAEIG+FFPM+VLRVLENV QP+F QKM VL  L+K+  DSQI+VD+F+NYDCDV
Sbjct: 439  FRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDV 498

Query: 550  DSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLR 609
            +S NIFER+VNGLLKTA G PPG  T+L P Q+ A + E++KCLV+I+RSMG WM++QLR
Sbjct: 499  NSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLR 558

Query: 610  IGETYLPKGSE-TDSSIDNNSIP---NGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKI 665
            + +    K  +  +++++  S+P      D +    + H+E++ E SDAAT+EQRRAYK+
Sbjct: 559  LPDPASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKL 618

Query: 666  ELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSL 725
            ELQ+GISLFNRKP KGIEFLIN+ KVG+SPEE+A+FLK+ +GLN+T+IGDYLGERE+ SL
Sbjct: 619  ELQEGISLFNRKPKKGIEFLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSL 678

Query: 726  KVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSAD 785
            KVMHAYVDSF+F+GM+F  AIR FL+GFRLPGEAQKIDRIMEKFAERYCKCNP +F+SAD
Sbjct: 679  KVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSAD 738

Query: 786  TAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEI 845
            TAYVLAYSVIMLNTDAHN MVK+KM+  DFIRNNRGIDDGKDLPEE++  LY++I KNEI
Sbjct: 739  TAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEI 798

Query: 846  KMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGK 905
            KM  D   P+ KQ+ + N++LGLD ILN+VI K+ E+  +  +  LI+ +QEQFK K+ K
Sbjct: 799  KMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARK 858

Query: 906  SESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMG 965
            SES+Y+A TD  ILRFMVEVCW PMLAAFSV LDQSDD++ T QCL+GFRHA+HVTAVM 
Sbjct: 859  SESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMS 918

Query: 966  MQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRI 1025
            M+T RDAFVTS+AKFT LH  AD+KQKN+DA+KAI+SIA EDGN+LQEAWEHILTC+SR 
Sbjct: 919  MKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRF 978

Query: 1026 EHLQLLGEGAPTDASFLTVSNVEADEKTQ-KSMGFPSLKKKGTLQNPSVMAVVRGGSYDS 1084
            EHL LLGEGAP DA+F      E+D+  Q KS   P LK+KG  +     A VR GSYDS
Sbjct: 979  EHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDS 1038

Query: 1085 TTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVS 1144
              VG  + G+VT EQ+N+ ++NLN+L+Q+G+FE+N +F  SQ+LNSEAI+ FVKALCKVS
Sbjct: 1039 AGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVS 1098

Query: 1145 ISELQSPTDPRVFSLTKLVEIA 1166
            + EL+SP+DPRVFSLTK+VEIA
Sbjct: 1099 MEELRSPSDPRVFSLTKIVEIA 1120

Length = 1780
>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain Back     alignment and domain information
>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S Back     alignment and domain information
>gnl|CDD|214569 smart00222, Sec7, Sec7 domain Back     alignment and domain information
>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>gnl|CDD|221768 pfam12783, Sec7_N, Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1166
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 100.0
KOG0929 1514 consensus Guanine nucleotide exchange factor [Intr 100.0
KOG0928 1386 consensus Pattern-formation protein/guanine nucleo 100.0
COG5307 1024 SEC7 domain proteins [General function prediction 100.0
cd00171185 Sec7 Sec7 domain; Domain named after the S. cerevi 100.0
PF01369190 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 do 100.0
smart00222187 Sec7 Sec7 domain. Domain named after the S. cerevi 100.0
KOG0930395 consensus Guanine nucleotide exchange factor Cytoh 100.0
KOG0931627 consensus Predicted guanine nucleotide exchange fa 100.0
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 100.0
KOG0932774 consensus Guanine nucleotide exchange factor EFA6 99.97
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 99.96
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 95.1
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 85.82
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.1e-205  Score=1967.62  Aligned_cols=1097  Identities=57%  Similarity=0.902  Sum_probs=887.2

Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCCC-------------CCCccccccc----
Q 001069            1 MSASQTLGGPSRCGRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDD-------------PSQVSSSLFG----   63 (1166)
Q Consensus         1 ~~~~~~~~~~~~~~~~l~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~~-------------~~~~~~~~~~----   63 (1166)
                      |+.+.+   +++++.||+++|++|+++|++|||++||+||++||+.|+.....             .+.+|+|+..    
T Consensus         1 ~~~~~~---~~~~~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (1780)
T PLN03076          1 MASSEA---DSRLGKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSI   77 (1780)
T ss_pred             CCcccc---cchhhHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence            444444   99999999999999999999999999999999999999976532             1234445442    


Q ss_pred             -CCccCchhcHHHHHHhhcCCCcchHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhc
Q 001069           64 -LSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVC  142 (1166)
Q Consensus        64 -~~~~~~~~i~~Pf~lAC~tk~~kl~~~aLdclqKLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~  142 (1166)
                       ++..+|+.||.||++||+||++||+.+|||||||||+||||.|+.++.++            +..+|||++|++||+|+
T Consensus        78 ~~~~~~~~~i~~pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~------------~~~~lid~~i~~Ic~c~  145 (1780)
T PLN03076         78 EYSLAESELILSPLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGG------------PEALLLAKLIESVCKCH  145 (1780)
T ss_pred             cccccCHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCC------------ccccHHHHHHHHHHhhc
Confidence             23357999999999999999999999999999999999999997654322            25689999999999999


Q ss_pred             CCCCCcchhHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhhccccCCCCcc
Q 001069          143 GIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFK  222 (1166)
Q Consensus       143 ~~~de~VqLqILk~Llt~v~s~~~~vHg~~Ll~avrtCynI~l~Sk~~~nq~tA~ATLtQmi~~VF~Rv~~~~~~~~~~~  222 (1166)
                      +.+||.|||||||+||++|++++|.|||++||+|||||||||+.||+++||+||||||||||++||+||+.+....+ .+
T Consensus       146 ~~~de~iqLqilk~Ll~~v~s~~~~vhg~~LLkaVR~cyni~l~Sks~~nq~tA~atLtQmv~~VF~R~e~~~~~~~-~~  224 (1780)
T PLN03076        146 DLGDEGIELLVLKTLLSAVTSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVP-IQ  224 (1780)
T ss_pred             cCCchHHHHHHHHHHHHHHcCCCceeEHHHHHHHHHHhheeeecCCcHHHHHHHHHHHHHHHHHHHHHhhccccccc-cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987643222 33


Q ss_pred             cchhhhhhhhhcccCCCCCccccccccccccccCCCCCCchhhhhhhhcccCCCCCCCCCccccccccchhcccccCCcc
Q 001069          223 TISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGE  302 (1166)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (1166)
                      ++.+++.+++.+.+..+++..+.+|.++++++.+.++..++...     .+......+                 .|+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------------~~~~~  282 (1780)
T PLN03076        225 PIVVAELMEPAEKSDSDTSMTQFVQGFITKIMQDIDGVLNPATA-----GKSSGSGAH-----------------DGAFE  282 (1780)
T ss_pred             ccccccccccccccccccchhhhhhhhhhhhccccccccCcccc-----ccccccccc-----------------ccccc
Confidence            44444445555555555556667888888777666544322110     000000000                 00000


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCcccccCccCCCCCCCCCCcCCCcccccCccCccccccccCCCCCCCCC
Q 001069          303 VAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQ  382 (1166)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (1166)
                            ......+..   +.+.........    ..+.. ....+.....+         ..+.+..+.+...++     
T Consensus       283 ------~~~~~~~~~---~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----  334 (1780)
T PLN03076        283 ------TTATVETTN---PADLLDSTDKDM----LDAKY-WEISMYKSALE---------GRKGELADGEVEKDD-----  334 (1780)
T ss_pred             ------cccccCCCC---cchhhccccccc----ccccc-ccccccccccc---------ccccccccccccccc-----
Confidence                  000000000   000000000000    00000 00000000000         000110010100000     


Q ss_pred             CCCCCCCCCcchhhhhHHHHHHHHHhcccCCCCCCCCcchhhhhhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHH
Q 001069          383 GNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCL  462 (1166)
Q Consensus       383 ~~~~~~~~~~~~~~~Da~lvF~~LC~Ls~~~~~~~~~~d~~~lrsk~l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~  462 (1166)
                         ..++++.+.+++|||+|||.||+|++|+.+.+...|++.||+|++|||||+++|+++|++|.+||.|+.+||+|||.
T Consensus       335 ---~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~Lc~  411 (1780)
T PLN03076        335 ---DLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIKQYLCL  411 (1780)
T ss_pred             ---hhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHHHH
Confidence               12334457899999999999999999998877667889999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcChhHHHHHh
Q 001069          463 SLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVF  542 (1166)
Q Consensus       463 ~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~EiEvfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~~~p~~l~ely  542 (1166)
                      +|+||+.|++++||+++|+||++|+.+||.|||.|||+||+.|+++++++.+++++.||+++|++|.+||++|++++|||
T Consensus       412 sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc~dp~~lveiy  491 (1780)
T PLN03076        412 SLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIF  491 (1780)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            99999999999999999999999999999999999999999999999998766789999999999999999999999999


Q ss_pred             HhcCCCCCCccHHHHHHHHHHhhccCCCCCCCCCCCchhhHHhhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCC-
Q 001069          543 VNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSET-  621 (1166)
Q Consensus       543 ~NYDCd~~~~nIfe~li~~Lsk~a~~~~~~~~~~~~~~q~~~l~~~aL~~L~~il~sl~~~~~~~~~~~~~~~~~~~~~-  621 (1166)
                      +|||||.++.||||+|++.|+|+|++.+++.+++..++||..||..||+||++||+||.+|+++....++.......+. 
T Consensus       492 vNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~~~~~~~~~~~  571 (1780)
T PLN03076        492 INYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAV  571 (1780)
T ss_pred             hccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhh
Confidence            9999999999999999999999999987776777788999999999999999999999999987654333211111110 


Q ss_pred             CCCCCCCCCC--CC-CCCCCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHH
Q 001069          622 DSSIDNNSIP--NG-EDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEV  698 (1166)
Q Consensus       622 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~~p~~i  698 (1166)
                      ..+....+.+  ++ .+....+.+..++.+...++++.|+++|++|..+++|+.+||+|||+||+||+++|+++++|++|
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~~~i~~~p~~i  651 (1780)
T PLN03076        572 ENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGESPEEI  651 (1780)
T ss_pred             ccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHH
Confidence            0000000000  00 00001111112222334567789999999999999999999999999999999999999999999


Q ss_pred             HHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCC
Q 001069          699 ASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP  778 (1166)
Q Consensus       699 A~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np  778 (1166)
                      |+||++++||||++||||||++++++.+||++|++.|||+|++||+|||.||++||||||+|+||||||+||+|||+|||
T Consensus       652 A~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np  731 (1780)
T PLN03076        652 AAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNP  731 (1780)
T ss_pred             HHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHhhhhhccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhhCccccCCCCCCchhhh
Q 001069          779 SSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQ  858 (1166)
Q Consensus       779 ~~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~~~~  858 (1166)
                      +.|.|+|+||+||||+||||||+|||+||+|||+++|+||+||+|+|+|||+|||++||++|+++||++++|+.++.+++
T Consensus       732 ~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~~~~  811 (1780)
T PLN03076        732 KAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQ  811 (1780)
T ss_pred             CcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987655544


Q ss_pred             hhhhhhhccchhhhhhhhchhHHHHHhhhhHHHHHHHHHHHhhhcCCCCCceEEecCchhhHHHHHHhhHHHHHHHHHhh
Q 001069          859 ANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTL  938 (1166)
Q Consensus       859 ~~~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~W~pilaaLS~~f  938 (1166)
                      ....++..|++++++...|+.+.+.|+++++++++++++.++++..+..+.|+.+++.+|+|+||+++|+|++||||++|
T Consensus       812 ~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~p~laalS~~~  891 (1780)
T PLN03076        812 SANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPL  891 (1780)
T ss_pred             ccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667888777777777777789999999999999999877666778999999999999999999999999999999


Q ss_pred             hccCcHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCcccchhhhHHHHHHHHHHHhhcCCcchhcHHHH
Q 001069          939 DQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHI 1018 (1166)
Q Consensus       939 ~~s~d~~~i~~~L~G~~~~i~Ia~~f~l~~~rDafi~sL~kfT~L~~~~~~~~Knv~aik~Ll~Ia~~~Gn~L~~sW~~I 1018 (1166)
                      ++++|+.++..||+||+.||+|||+|||+++||+||.+|||||+|+++.+|++||++|+|+||+||+++||+|++||++|
T Consensus       892 ~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~I  971 (1780)
T PLN03076        892 DQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHI  971 (1780)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcccccccccchhh-hhhccCCCCCccccCCCCCcchhhhhcCCcccccccCCCCCCCCCH
Q 001069         1019 LTCLSRIEHLQLLGEGAPTDASFLTVSNVEADE-KTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTP 1097 (1166)
Q Consensus      1019 L~~Is~Le~lqll~~g~~~d~~~~~~~~~~~~~-~~~~~~~~~~l~r~~~~~~~~~~~~~~~~sy~s~~~~~~~~~~~t~ 1097 (1166)
                      |+||||||||||++.|+.||..++..|..+.+. +..++..+|...++++.+.+......+++++.+...++.....+++
T Consensus       972 L~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1051 (1780)
T PLN03076        972 LTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTS 1051 (1780)
T ss_pred             HHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccccccccccccchhhhhhcccccccccccccccccCCH
Confidence            999999999999999999987665544433322 2233445665555444332222222334555544444445567788


Q ss_pred             HHHHhhhhhhhHHhhhcccchhHHHHhccCCCHHHHHHHHHHHHHhhHhhhcCCCCCcchhhhHHHhcC
Q 001069         1098 EQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIA 1166 (1166)
Q Consensus      1098 eei~~~~~~~~vi~~i~s~~id~IF~~S~~L~~eaIv~FVkALc~vS~eEi~~~~~PriFsLqKLVEVa 1166 (1166)
                      +++.....+..+++.|+++.||+||++|++|+++||++||+|||+||+|||++.++||+||||||||||
T Consensus      1052 ~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa 1120 (1780)
T PLN03076       1052 EQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIA 1120 (1780)
T ss_pred             HHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHH
Confidence            888877777777888999999999999999999999999999999999999887889999999999996

>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5307 SEC7 domain proteins [General function prediction only] Back     alignment and domain information
>cd00171 Sec7 Sec7 domain; Domain named after the S Back     alignment and domain information
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region [] Back     alignment and domain information
>smart00222 Sec7 Sec7 domain Back     alignment and domain information
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1166
3ltl_A211 Crystal Structure Of Human Big1 Sec7 Domain Length 1e-56
1r8q_E203 Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A 5e-54
1r8s_E203 Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain C 2e-53
1r8m_E203 Sec7 Domain Of The Arf Exchange Factor Arno With Br 1e-52
1pbv_A195 Sec7 Domain Of The Exchange Factor Arno Length = 19 2e-51
3l8n_A202 Crystal Structure Of A Domain Of Brefeldin A-Inhibi 2e-50
2r0d_A347 Crystal Structure Of Autoinhibited Form Of Grp1 Arf 3e-50
4a4p_A192 Crystal Structure Of The Sec7 Domain From Human Cyt 9e-50
1bc9_A200 Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average 1e-49
2r09_A347 Crystal Structure Of Autoinhibited Form Of Grp1 Arf 6e-49
1xsz_A356 The Structure Of Ralf Length = 356 1e-28
1re0_B221 Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe 3e-28
1ku1_A230 Crystal Structure Of The Sec7 Domain Of Yeast Gea2 2e-27
1xt0_B203 The Structure Of N-Terminal Sec7 Domain Of Ralf Len 6e-27
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain Length = 211 Back     alignment and structure 
Iteration: 1

 Score =  218 bits (556), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/183 (54%), Positives = 135/183 (73%), Gaps = 2/183 (1%)
Query: 667 LQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLK 726
           +++GI LFN+KP +GI++L     +G +PE++A FL     L+ T +G++LG+ ++F+ +
Sbjct: 22  IEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKE 81
Query: 727 VMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSS--FTSA 784
           VM+AYVD  +F G DF  A+R FL GFRLPGEAQKIDR+MEKFA RY +CN     F SA
Sbjct: 82  VMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASA 141
Query: 785 DTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNE 844
           DTAYVLAYS+IML TD H+  VK+KMTK  +I+ NRGI+D KDLPEEYL  +Y++I   +
Sbjct: 142 DTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKK 201
Query: 845 IKM 847
           I M
Sbjct: 202 ISM 204
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A Sec7 Domain Length = 203 Back     alignment and structure
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying The Mutation Of The Catalytic Glutamate To Lysine Length = 203 Back     alignment and structure
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin A- Sensitizing Mutations Length = 203 Back     alignment and structure
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno Length = 195 Back     alignment and structure
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited Guanine Nucleotide-Exchange Protein 2 (Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human). Northeast Structural Genomics Consortium Target Id Hr5562a Length = 202 Back     alignment and structure
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 Back     alignment and structure
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1 Length = 192 Back     alignment and structure
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average Structure Length = 200 Back     alignment and structure
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 Back     alignment and structure
>pdb|1XSZ|A Chain A, The Structure Of Ralf Length = 356 Back     alignment and structure
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 221 Back     alignment and structure
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2 Length = 230 Back     alignment and structure
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf Length = 203 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1166
1xsz_A356 Guanine nucleotide exchange protein; ARF guanine n 1e-102
1r8s_E203 ARNO; protein transport/exchange factor, protein t 2e-98
3ltl_A211 Brefeldin A-inhibited guanine nucleotide-exchange 8e-98
2r09_A347 Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph 8e-97
1ku1_A230 ARF guanine-nucleotide exchange factor 2; SEC7 dom 5e-88
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Length = 356 Back     alignment and structure
 Score =  327 bits (839), Expect = e-102
 Identities = 89/360 (24%), Positives = 148/360 (41%), Gaps = 33/360 (9%)

Query: 654  AATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKK--VGDSPEEVASFL-KNTTGLNE 710
            A+  E  +A +    + I  FN KP  GI  +    +       EE+A F  +    L+ 
Sbjct: 2    ASHPEIEKAQR----EIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDL 57

Query: 711  TMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFA 770
              +GDYL   E  + +V+ A+    NF G  F   +R FL+ F+LPGEAQKIDR+++ F+
Sbjct: 58   EAVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFS 117

Query: 771  ERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMV--KDKMTKADFIRNNRGIDDGKDL 828
              Y + NP   ++AD AY+LA+  IMLNTD HN  +  K+KMT     RN RG ++G D 
Sbjct: 118  GAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDF 177

Query: 829  PEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGAN 888
              ++L  LY +I     ++N   ++P  +  ++                           
Sbjct: 178  DAKFLEELYSEIKAKPFELNFVKTSPGYELTSTTLN-----------------------K 214

Query: 889  GLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATN 948
                +++     S      +++  + D           W      +  T+  +D+K +  
Sbjct: 215  DSTFKKLDSFLHSTDVNINTVFPGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQ 274

Query: 949  QCLQGFRHAVHVTAVMGMQTQR-DAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIED 1007
              +Q +   +    + G Q +       +         AA      V   KA     + D
Sbjct: 275  ATIQVYTPNIFSKWLFGEQPRVIIQPGQTKESIDLAAKAAADFSSPVKNFKATYDYEVGD 334
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Length = 203 Back     alignment and structure
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} PDB: 3l8n_A 3swv_A Length = 211 Back     alignment and structure
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347 Back     alignment and structure
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Length = 230 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1166
3ltl_A211 Brefeldin A-inhibited guanine nucleotide-exchange 100.0
1r8s_E203 ARNO; protein transport/exchange factor, protein t 100.0
1ku1_A230 ARF guanine-nucleotide exchange factor 2; SEC7 dom 100.0
1xsz_A356 Guanine nucleotide exchange protein; ARF guanine n 100.0
2r09_A347 Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph 100.0
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 80.96
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A Back     alignment and structure
Probab=100.00  E-value=4.9e-63  Score=523.21  Aligned_cols=196  Identities=52%  Similarity=0.921  Sum_probs=187.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcC
Q 001069          656 TLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSF  735 (1166)
Q Consensus       656 ~l~~~k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~f  735 (1166)
                      +|++.|++|+.+.+|+.+||.||++||+||+++|+|+++|++||+||+++++|||++||+|||+++++|.+||++||++|
T Consensus        11 ~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~f   90 (211)
T 3ltl_A           11 QFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQH   90 (211)
T ss_dssp             ----CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHHHHHHHhCcCccHHHHHHHHhccchhHHHHHHHHHHhc
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCC--CCCCchhHHHHHHHHhhhhhccccccccCCCCHH
Q 001069          736 NFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKA  813 (1166)
Q Consensus       736 df~~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~--~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~  813 (1166)
                      ||+|++||+|||.||.+||||||+|+||||||+||+|||+|||+  +|.|+|+||+|+|||||||||+|||+||+|||++
T Consensus        91 dF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~~  170 (211)
T 3ltl_A           91 DFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKE  170 (211)
T ss_dssp             CCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCHH
T ss_pred             CCCCCCHHHHHHHHHHhCcCCCchhHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHhhhhcCccccCCCCHH
Confidence            99999999999999999999999999999999999999999997  6999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCCCCCHHHHHHHHHHHhhCccccCCCC
Q 001069          814 DFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADS  851 (1166)
Q Consensus       814 ~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~  851 (1166)
                      +|++|+||+|+|+|||+++|++||++|+++||+|+++.
T Consensus       171 ~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~  208 (211)
T 3ltl_A          171 QYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETK  208 (211)
T ss_dssp             HHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC---
T ss_pred             HHHHHhhcccCCCCCCHHHHHHHHHHHHhCCccCCCCC
Confidence            99999999999999999999999999999999999875
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Back     alignment and structure
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Back     alignment and structure
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Back     alignment and structure
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1166
d1r8se_187 a.118.3.1 (E:) Exchange factor ARNO {Human (Homo s 3e-84
d1xsza1197 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legio 3e-78
d1ku1a_211 a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 3e-76
d1b0ba_142 a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) 2e-04
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Length = 187 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: Exchange factor ARNO
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  269 bits (689), Expect = 3e-84
 Identities = 101/185 (54%), Positives = 127/185 (68%)

Query: 666 ELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSL 725
           ++  G   FN  P KGI+FL+ ++ + ++PEE+A FL    GLN+T IGDYLGEREE +L
Sbjct: 3   KMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNL 62

Query: 726 KVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSAD 785
            V+HA+VD   F  ++   A+R FL  FRLPG+AQKIDR+ME FA+RYC CNP  F S D
Sbjct: 63  AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTD 122

Query: 786 TAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEI 845
           T YVL+YSVIMLNTD HN  V+DKM    F+  NRGI++G DLPEE L  LYD I     
Sbjct: 123 TCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPF 182

Query: 846 KMNAD 850
           K+  D
Sbjct: 183 KIPED 187
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 197 Back     information, alignment and structure
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 211 Back     information, alignment and structure
>d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 29163]} Length = 142 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1166
d1ku1a_211 ARF guanine-exchange factor 2, Gea2 {Baker's yeast 100.0
d1r8se_187 Exchange factor ARNO {Human (Homo sapiens) [TaxId: 100.0
d1xsza1197 RalF, N-terminal domain {Legionella pneumophila [T 100.0
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-57  Score=481.86  Aligned_cols=186  Identities=38%  Similarity=0.651  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHHHhccCchhhHHHHHhcCCCCC-CHHHHHHHhH-cCCCCChhHHhhhccccchHHHHHHHHHHhcCCCC
Q 001069          661 RAYKIELQKGISLFNRKPSKGIEFLINSKKVGD-SPEEVASFLK-NTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFK  738 (1166)
Q Consensus       661 k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~-~p~~iA~fL~-~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~  738 (1166)
                      +++|..+.+|+.+||+||++||+||+++|++.+ +|++||+||+ .+++|||++||||||++++  .+||++|++.|||+
T Consensus         9 ~~rK~~~~~~v~~FN~~pk~Gi~~L~~~~~i~~~~~~~iA~FL~~~~~~Ldk~~iGeyLg~~~n--~~vL~~y~~~fdf~   86 (211)
T d1ku1a_           9 MDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDK--VSLLNEYIRLFDFS   86 (211)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGGG--HHHHHHHHHTSCCT
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHCCCcCCCCHHHHHHHHHhcCCCCCHHHHHHHHCCCch--HHHHHHHHhccCcC
Confidence            567899999999999999999999999999965 7999999996 5677999999999998764  68999999999999


Q ss_pred             CCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCC---------------CCCCCchhHHHHHHHHhhhhhcccc
Q 001069          739 GMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP---------------SSFTSADTAYVLAYSVIMLNTDAHN  803 (1166)
Q Consensus       739 ~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np---------------~~f~~~d~~y~LaysiimLnTDlHn  803 (1166)
                      |++||+|||.||.+||||||+|+||||||+||++||+|||               .+|.|+|++|+||||+||||||+||
T Consensus        87 ~~~id~ALR~~l~~f~LPgEaQ~IdRile~Fa~~Y~~~N~~~~~~~~~~~~~~~~~~f~s~d~~y~L~ysiimLnTdlHn  166 (211)
T d1ku1a_          87 GLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLNTDLHN  166 (211)
T ss_dssp             TCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHhccCCchHHHHHHHHHHHhHHHHhcCCCCcccccccccccccccccCccHHHHHHHHHHHHhhhccC
Confidence            9999999999999999999999999999999999999998               4799999999999999999999999


Q ss_pred             ccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhhCccccC
Q 001069          804 SMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMN  848 (1166)
Q Consensus       804 ~~vk~kmt~~~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~  848 (1166)
                      |+||+|||+++|++|+||+|+|+|||+++|++||++|+++||+||
T Consensus       167 p~vk~kMt~~~Fi~n~rgin~~~d~~~e~L~~iY~~I~~~ei~lP  211 (211)
T d1ku1a_         167 PQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMP  211 (211)
T ss_dssp             TTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC
T ss_pred             CcccCCCCHHHHHHHHhcCcCCCCCCHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999999999999999999999986
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure