Citrus Sinensis ID: 001075

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160---

MSSQRQRQVNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKAAAYNSKPSSENVVSQNKPPECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAKGATAAQETSQSKPDGSSNISTDHFSRFLDPSVTGVELVQLKNDQSSSTSLTSSEDNQNGSHLSKDPLLSLDTRSTCSWGLLPMISQTSDEKCIQRHHSGGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTSDRYSDKLKIDNSFPHADWKKSNGLVVASYPEDDEEVELGSSSSYTSEDEETDSATGLDSPGTKVWDGKSNRNLSVSQIHHPLENPSRRQVQYQRLSRTQSGRKRSRLSSQKLPIWQEVERTSFLSGDGQDILNSQKGRRKVDESSDESESEILGRSQSGAAASSSASFITLPENHSSTVNPVQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQVIIFISLSLIVYLSIINTKNVFDCLSLLSLSFLRTITYTLMQTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSIGNQIISSSYRSEHLGSESKESAGQAKHNFVAEGQKFNVKEMSRSPVQNTSKEHEKSLEDSRSGLDTSVQKSSPSLRNLGKPMKGRKSDGLEETSESLLDASTDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLTKRPKRRQVPPSSSSQGSPQVRQPAEISSPGLSEEQKQEADRRAKFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVCLKHLAFDLLELLLLSTFPELNYAFKQVHEEKHRFGEYKED

ccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHccccccccccccHHHHHcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEccccEEEEEEEEEEEccccEEEEEcccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccc

ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHccHHHHcccccccccccccHccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEcccccccccEEEcccccccccccccccccccccccccEcccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEEEEEEEEEEEEccccEEEEEEEEEEcccccEEEEEEcHHHHHHHHHHHHHccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHcccccccccccccHHHHHccccccccHHHHHHHHHHHEccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEccccccccccccHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccc

mssqrqrqVNFRDLVEEGKKRIVILVICVAGLSYLMSLtsssvlvnMPAAASLIILLRYFSLDFEMRRKAAaynskpssenvvsqnkppecpkvverpnwrrnvnspvVEDAIDKFTRHLVSEWVTDLWYSrltrdkegpEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEkqhsepltierrDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLisftfrpqdlqCSFFRYIVRELLACAVmrpvlnlanprFINERIESLAVSMTKakgataaqetsqskpdgssnistdhfsrfldpsvtgVELVQlkndqssstsltssednqngshlskdpllsldtrstcswgllpmisqtsdekciqrhhsggewpekLDLISRRktralapehfdnmwtkgrnykrkegenwVNEQHSVLKSatadgskamekpkekntmtnvkpsmtrttsdrysdklkidnsfphadwkksnglvvasypeddeevelgssssytsedeetdsatgldspgtkvwdgksnrnlsvsqihhplenpsrrqVQYQRLSrtqsgrkrsrlssqklpiwqevertsflsgdgqdilnsqkgrrkvdessdeseseilgrsqsgaaasssasfitlpenhsstvnpvqnslmVDSFFKLRCEVLGanivksdsrTFAVYAIAVtdsnnnswsIKRRFRHFEELHRRLKFFQeynlhlppkhflstgldVSVIQERCKLLDRYLKMLLQlptvsgsiEVWDFLSVDSQVIIFISLSLIVYLSIINTKNVFDCLSLLSLSFLRTITYTLMQTYAFSNPFSIVETLsvdledkpserstkFTNSIGNQIIsssyrsehlgseskesagQAKHNFVAegqkfnvkemsrspvqntskeHEKSLedsrsgldtsvqksspslrnlgkpmkgrksdgleetseslldastdptlptewvppnlsvpilDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEqilwpdgifltkrpkrrqvppssssqgspqvrqpaeisspglseeQKQEADRRAKFVFELMidkapapvvglvgrkEYEQCAKDLYYFIQSSVCLKHLAFDLLELLLLSTFPELNYAFKQVHEEkhrfgeyked

mssqrqrqvnfrdlveegkkrIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKAAAynskpssenvvsqnkppecpkvverpnwrrnvnspVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQakiekqhsepltierrdIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAKGataaqetsqskpdgssnISTDHFSRFLDPSVTGVELVQLKNDQSsstsltssednqngshlskdpllslDTRSTCSWGLLPMISQTSDEKCIQRHhsggewpekldLISRRKTralapehfdnmwtkgrnYKRKEGENWVNEqhsvlksatadgskamekpkekntmtnvkpsmtrttsdrysDKLKIdnsfphadwkksnGLVVASYPEDDEEVELGssssytsedeetdsatgldspgtkvWDGKSNRNLSVSqihhplenpsrrqvqYQRLsrtqsgrkrsrlssqklpiwqevertsflsgdgqdilnsqkgrrkvdessdeseseilgrsqsgaaASSSASFITLPENHSSTVNPVQNSLMVDSFFKLRCEVLGAnivksdsrTFAVYAIavtdsnnnswsiKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQVIIFISLSLIVYLSIINTKNVFDCLSLLSLSFLRTITYTLMQTYAFSNPFSIVETLSVDledkpserstkftnsignqiISSSYRSEHLGSESKESAGQAKHNFVAEgqkfnvkemsrspvqntskeheksledsrsgldtsvqksspslrnlgkpmkgrkSDGLEETSESLLDASTDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVasgikrleqilwpdgifltkrpkrrqvppssssqgspqvrqpaeisspglseeqkqEADRRAKFVFELMIdkapapvvglvGRKEYEQCAKDLYYFIQSSVCLKHLAFDLLELLLLSTFPELNYAFKQVHeekhrfgeyked

MSSQRQRQVNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKAAAYNSKPSSENVVSQNKPPECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAKGATAAQETSQSKPDGSSNISTDHFSRFLDPSVTGVELVQLKNDQssstsltssEDNQNGSHLSKDPLLSLDTRSTCSWGLLPMISQTSDEKCIQRHHSGGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTSDRYSDKLKIDNSFPHADWKKSNGLVVASYPEDDEEVELGssssytsedeetdsATGLDSPGTKVWDGKSNRNLSVSQIHHPLENPSRRQVQYQRLSRTQSGRKRSRLSSQKLPIWQEVERTSFLSGDGQDILNSQKGRRKVdessdeseseILGRsqsgaaasssasFITLPENHSSTVNPVQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKrrfrhfeelhrrlKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQViifislslivylsiiNTKNVFDClsllslsflRTITYTLMQTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSIGNQIISSSYRSEHLGSESKESAGQAKHNFVAEGQKFNVKEMSRSPVQNTSKEHEKSLEDSRSGLDTSVQKSSPSLRNLGKPMKGRKSDGLEETSESLLDASTDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLTkrpkrrqvppssssqgspqvrqpAEISSPGLSEEQKQEADRRAKFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVClkhlafdllellllSTFPELNYAFKQVHEEKHRFGEYKED

**********FRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMR********************************WRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLA*******************************************************************************RSTCSWGLLPMIS******CI************LDLI***********HFDNMWT*******************************************************************************************************************************************************************************************************************************************QNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQVIIFISLSLIVYLSIINTKNVFDCLSLLSLSFLRTITYTLMQTYAFSNPFSIVETLSV****************************************************************************************************************************TEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLT*******************************************KFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVCLKHLAFDLLELLLLSTFPELNYAFKQVH************

*************LVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFE*****************************************PVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT*******************EIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAV**********************************************************************************************************************************MWTKGRNY********************************************************************************************************************************************************************************************************************************************DSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFL***LD**VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ****************************************************************************************LGSESKESAGQAKHNFVAEGQKFN************************************************************************WVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLTKRPK******************************************FELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVCLKHLAFDLLELLLLSTFPELNYAFK***************

*********NFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKAA******************ECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVS***********************ISTDHFSRFLDPSVTGVELVQLK********************LSKDPLLSLDTRSTCSWGLLPMISQTSDEKCIQRHHSGGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTSDRYSDKLKIDNSFPHADWKKSNGLVVASYP****************************SPGTKVWDGKSNRNLSVSQIHHPLEN*************************QKLPIWQEVERTSFLSGDGQDILN*********************************SFITLPENHSSTVNPVQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQVIIFISLSLIVYLSIINTKNVFDCLSLLSLSFLRTITYTLMQTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSIGNQIISSSY***************AKHNFVAEGQKFNVK**********************************SLRNLG***********************DPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLTKR**************************************RRAKFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVCLKHLAFDLLELLLLSTFPELNYAFKQVHEE**********

*********NFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKA*******************ECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKA********************************VTGVE****K*********************************************************GGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYK*K*******************************************************************************************************SPGTKVWDGKSNRNLSVSQIHHPL************************************************************************************************VNPVQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQVIIFISLSLIVYLSIINTKNVFDCLSLLSLSFLRTITYTLMQTYAFSNP**IV*T*************************************************************************************************************************TDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLTKRP****************************SEEQKQEADRRAKFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVCLKHLAFDLLELLLLSTFPELNYAFKQVHEEKHRFG*****

iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1163	2.2.26 [Sep-21-2011]
Q6PHS6		957	Sorting nexin-13 OS=Mus m	yes	no	0.154	0.188	0.252	7e-07
Q8C080		344	Sorting nexin-16 OS=Mus m	no	no	0.095	0.322	0.292	3e-06
P57769		344	Sorting nexin-16 OS=Rattu	no	no	0.095	0.322	0.292	4e-06
P57768		344	Sorting nexin-16 OS=Homo	yes	no	0.095	0.322	0.283	4e-06
Q5R6Q7		344	Sorting nexin-16 OS=Pongo	yes	no	0.095	0.322	0.283	4e-06
Q9Y5W8		968	Sorting nexin-13 OS=Homo	no	no	0.154	0.185	0.241	4e-06
Q9USN1		1010	Sorting nexin-12 OS=Schiz	yes	no	0.073	0.084	0.364	8e-05
Q4G017		1502	Nischarin OS=Rattus norve	no	no	0.073	0.056	0.354	0.0008
Q3ZT31		840	Sorting nexin-25 OS=Mus m	no	no	0.116	0.160	0.238	0.0008

>sp\|Q6PHS6\|SNX13_MOUSE Sorting nexin-13 OS=Mus musculus GN=Snx13 PE=2 SV=1	Back alignment and function desciption

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 6/186 (3%)

Query: 101 RRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRN 160
           RR   + ++++ + +  +  + ++V   WY  L+ D+    E+ Q +   L +F+ R + 
Sbjct: 92  RRLTGANIIDEPLQQVIQFSLRDYVQ-YWYYTLSDDESFLLEIRQTLQNALIQFATRSKE 150

Query: 161 INLIDLLTRDFVNLICTHLELFRATQAKI-EKQHSEPLTIE---RRDIEIRCVLAAENKL 216
           I+     T   V+   THL +FR  Q ++ EK      T E       E+   +  +   
Sbjct: 151 IDWQPYFTTRIVDDFGTHLRVFRKAQQRVTEKDDQVKGTAEDLVETFFEVEVEMEKDVCR 210

Query: 217 HPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLN-LANPR 275
                S + E   L+ L + L+     P D Q    RY VRE+LA  ++ P++N L++P 
Sbjct: 211 DLVCTSPKDEEGFLRDLCEVLLYLLLPPGDFQSKIMRYFVREILARGILLPLINQLSDPD 270

Query: 276 FINERI 281
           +IN+ +
Sbjct: 271 YINQYV 276

May be involved in several stages of intracellular trafficking. Acts as a GAP for Galphas (By similarity). May play a role in endosome homeostasis.
Mus musculus (taxid: 10090)

>sp\|Q8C080\|SNX16_MOUSE Sorting nexin-16 OS=Mus musculus GN=Snx16 PE=2 SV=2	Back alignment and function description

>sp\|P57769\|SNX16_RAT Sorting nexin-16 OS=Rattus norvegicus GN=Snx16 PE=1 SV=2	Back alignment and function description

>sp\|P57768\|SNX16_HUMAN Sorting nexin-16 OS=Homo sapiens GN=SNX16 PE=1 SV=2	Back alignment and function description

>sp\|Q5R6Q7\|SNX16_PONAB Sorting nexin-16 OS=Pongo abelii GN=SNX16 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y5W8\|SNX13_HUMAN Sorting nexin-13 OS=Homo sapiens GN=SNX13 PE=1 SV=4	Back alignment and function description

>sp\|Q9USN1\|SNX12_SCHPO Sorting nexin-12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snx12 PE=3 SV=1	Back alignment and function description

>sp\|Q4G017\|NISCH_RAT Nischarin OS=Rattus norvegicus GN=Nisch PE=2 SV=2	Back alignment and function description

>sp\|Q3ZT31\|SNX25_MOUSE Sorting nexin-25 OS=Mus musculus GN=Snx25 PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1163
255549996		1083	conserved hypothetical protein [Ricinus	0.901	0.968	0.632	0.0
297743269		1087	unnamed protein product [Vitis vinifera]	0.899	0.962	0.623	0.0
359482596		1069	PREDICTED: uncharacterized protein LOC10	0.899	0.978	0.623	0.0
356522166		1136	PREDICTED: uncharacterized protein LOC10	0.945	0.968	0.610	0.0
356528930		1111	PREDICTED: uncharacterized protein LOC10	0.925	0.968	0.595	0.0
357468395		1225	hypothetical protein MTR_4g012920 [Medic	0.938	0.890	0.553	0.0
449448178		1093	PREDICTED: uncharacterized protein LOC10	0.913	0.971	0.545	0.0
238478494		1020	phox (PX) domain-containing protein [Ara	0.862	0.983	0.529	0.0
334182596		1012	phox (PX) domain-containing protein [Ara	0.843	0.969	0.514	0.0
297844428		949	predicted protein [Arabidopsis lyrata su	0.798	0.978	0.522	0.0

>gi\|255549996\|ref\|XP_002516049.1\| conserved hypothetical protein [Ricinus communis] gi\|223544954\|gb\|EEF46469.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1416 bits (3665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 749/1185 (63%), Positives = 859/1185 (72%), Gaps = 136/1185 (11%)

Query: 6    QRQVNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFE 65
            QRQV  RDLVEE KKRIV+L+ICV GLSYLMSLTSSSV VN+PAAASLI+LLRYFSLD+E
Sbjct: 4    QRQVTVRDLVEEAKKRIVVLIICVIGLSYLMSLTSSSVWVNLPAAASLILLLRYFSLDYE 63

Query: 66   MRRKAAAYNSKPSSENVVSQNKPPECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWV 125
            MRRKAA YNSKPSS N VSQN  PE  +  E+ +WR+ VNSPVVEDAID F RHL+SEWV
Sbjct: 64   MRRKAATYNSKPSSANPVSQNNNPEHTRAREKSDWRKKVNSPVVEDAIDHFARHLISEWV 123

Query: 126  TDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT 185
            TDLWYSRLT D+EGPEEL+QI+NGV GEFS R+RNINLIDLLTRD ++LICTHLELFR++
Sbjct: 124  TDLWYSRLTPDREGPEELIQIVNGVFGEFSSRMRNINLIDLLTRDLIHLICTHLELFRSS 183

Query: 186  QAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQ 245
            QAKIE   S  L+ E+RD E+R VLAAEN+LHPALF AEAEHKVLQ +MD LISFTF+P+
Sbjct: 184  QAKIETHPSALLSFEQRDKELRLVLAAENRLHPALFCAEAEHKVLQHVMDGLISFTFKPE 243

Query: 246  DLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAKGATAAQETSQSKP 305
            DLQCSFFR+IVRELLACAVMRPVLNLA+PRFINERIE L +S    KG  AAQE SQSK 
Sbjct: 244  DLQCSFFRFIVRELLACAVMRPVLNLASPRFINERIEILVLSKAN-KGVPAAQEASQSKS 302

Query: 306  DGSSNISTDHFSRFLDPSVTGVELVQLKNDQSSSTSLTSSEDNQNGSHLSKDPLLSLDTR 365
            +GSS IS+D FSR LDP+  GVELVQLK  QS   S++   DN NG+H SKDPLLS+DTR
Sbjct: 303  NGSSKISSDQFSRILDPTAVGVELVQLKTIQSKRGSVSPETDNVNGTHGSKDPLLSIDTR 362

Query: 366  STCSWGLLPMISQTSDEKCIQRHHSGGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYK 425
            S+ SW  LP+   ++D   IQR+ SGGEW + LD++S+RKT ALAPE+F+NMW KGRNY+
Sbjct: 363  SSRSWSSLPLNPPSTDTGGIQRYASGGEWGDMLDMLSQRKTAALAPENFENMWAKGRNYR 422

Query: 426  RKEGENWVNEQHSVL----KSATADGSKAMEKPKEKNTMTNVKPSMTRTTSDRYSDKLKI 481
             K+ +N   E  S      K  TAD SK M K KEK+ +     S+++            
Sbjct: 423  NKDSQNRSTEHFSQNLSGNKIVTADQSK-MAKAKEKHALNASDASLSQ------------ 469

Query: 482  DNSFPHADWKKSNGLVVASYPEDDEEVELGSSSSYTSEDEETDSATGLDSPGTKVWDGKS 541
             N   H D                 E E GS S YTSE+E+    TGLD PGTKVWD K+
Sbjct: 470  -NGLMHVD-----------------ESESGSGSLYTSEEEDPSRVTGLDDPGTKVWDRKT 511

Query: 542  NRNLSVSQIHHPLENPSRR--------QVQYQRLSRTQSGRKRSRLSSQKLPIWQEVERT 593
            NRNL+VS IHHPLENP R         Q  Y+++ R QSGRK                  
Sbjct: 512  NRNLAVSPIHHPLENPQRHGTKKTERGQAHYEKIPRPQSGRK------------------ 553

Query: 594  SFLSGDGQDILNSQKGRRKVDESSDESESEILGRSQSGAAASSSASFITLPENHSSTVNP 653
                        S KG  K D+SSD+SE E LGR  SGA A SSA  ++LPEN SST+N 
Sbjct: 554  ------------SSKGHAKADDSSDDSEVEGLGRVYSGATACSSALSVSLPENDSSTLNS 601

Query: 654  VQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRR 713
            V++SLM DSFFKLRCEVLGANIVKS SR FAVY+I+VTD NNNSWSIKRRFRHFEELHRR
Sbjct: 602  VKSSLMADSFFKLRCEVLGANIVKSASRMFAVYSISVTDVNNNSWSIKRRFRHFEELHRR 661

Query: 714  LKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773
            LK + EYNLHLPPKHFLSTGLD+ +IQERCKLLDRYLK LLQLPT+SGSIEVWDFLSVDS
Sbjct: 662  LKEYSEYNLHLPPKHFLSTGLDMPIIQERCKLLDRYLKKLLQLPTISGSIEVWDFLSVDS 721

Query: 774  QVIIFISLSLIVYLSIINTKNVFDCLSLLSLSFLRTITYTLMQTYAFSNPFSIVETLSVD 833
            Q                                          TY FSN FSI+ETLSVD
Sbjct: 722  Q------------------------------------------TYIFSNSFSIIETLSVD 739

Query: 834  LEDKPSERSTKFTNSIGNQIISSSYRSEHLGSESKESAGQAKHNFVAEGQKFNVKEMSRS 893
            L+DKP ERSTK +N +G  + S S   E LG+E KESA Q KHNFVA+G K + K +S S
Sbjct: 740  LDDKPPERSTKGSNFVG-PVNSLSTNREQLGTECKESASQTKHNFVADGVKMSPKHISCS 798

Query: 894  PVQNTSKEHEKSLEDSRSGLDTSVQKSSPSLRNLGKPMKGRKSDGLEETSESLLDASTDP 953
            PV+   KE  K  EDS S  D   +K++ S+RNLGK +KGR+ DG E   ES+ DAS DP
Sbjct: 799  PVKKLGKESGKPFEDSVSNSD--AKKNASSVRNLGKTVKGRQIDGSESKPESIRDASPDP 856

Query: 954  TLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQ 1013
            TLPTEWVPPNL+ PILDLVDVIFQLQDGGWIRR+AFWVAKQ+LQLGMGDA DDWL+EKIQ
Sbjct: 857  TLPTEWVPPNLAAPILDLVDVIFQLQDGGWIRRQAFWVAKQILQLGMGDALDDWLIEKIQ 916

Query: 1014 LLRRGSVVASGIKRLEQILWPDGIFLTKRPKRRQV--------------PPSSSSQ--GS 1057
            LLR GSVVASGIKR+EQILWPDGIF+TK PKRRQ               PP+ SS    S
Sbjct: 917  LLRTGSVVASGIKRVEQILWPDGIFITKHPKRRQPSTTNTPYSSPHGQQPPNISSPKLSS 976

Query: 1058 PQVRQPAEISSPGLSEEQ-KQEADRRAKFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYY 1116
            P VRQP+EISSP LS+EQ +QEADRRAKFV+ELMI+ AP+ +VGLVGRKEYEQCAKDLY+
Sbjct: 977  PLVRQPSEISSPRLSDEQLQQEADRRAKFVYELMINNAPSTIVGLVGRKEYEQCAKDLYF 1036

Query: 1117 FIQSSVCLKHLAFDLLELLLLSTFPELNYAFKQVHEEKHRFGEYK 1161
            F+QSSVCLK LAFDLLELLLLS FPEL+Y F+Q+HEEKHRFGE K
Sbjct: 1037 FLQSSVCLKQLAFDLLELLLLSAFPELDYVFRQLHEEKHRFGELK 1081

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297743269\|emb\|CBI36136.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359482596\|ref\|XP_002279481.2\| PREDICTED: uncharacterized protein LOC100243006 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356522166\|ref\|XP_003529719.1\| PREDICTED: uncharacterized protein LOC100778731 [Glycine max]	Back alignment and taxonomy information

>gi\|356528930\|ref\|XP_003533050.1\| PREDICTED: uncharacterized protein LOC100790491 [Glycine max]	Back alignment and taxonomy information

>gi\|357468395\|ref\|XP_003604482.1\| hypothetical protein MTR_4g012920 [Medicago truncatula] gi\|355505537\|gb\|AES86679.1\| hypothetical protein MTR_4g012920 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449448178\|ref\|XP_004141843.1\| PREDICTED: uncharacterized protein LOC101219007 [Cucumis sativus] gi\|449491852\|ref\|XP_004159021.1\| PREDICTED: uncharacterized LOC101219007 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|238478494\|ref\|NP_001154343.1\| phox (PX) domain-containing protein [Arabidopsis thaliana] gi\|332191172\|gb\|AEE29293.1\| phox (PX) domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334182596\|ref\|NP_001185002.1\| phox (PX) domain-containing protein [Arabidopsis thaliana] gi\|332191173\|gb\|AEE29294.1\| phox (PX) domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297844428\|ref\|XP_002890095.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297335937\|gb\|EFH66354.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1163
TAIR\|locus:2037753		1020	AT1G15240 [Arabidopsis thalian	0.423	0.482	0.562	3.2e-268
UNIPROTKB\|F1PSY8		904	SNX13 "Uncharacterized protein	0.154	0.199	0.279	5.6e-15
UNIPROTKB\|B8ZZT9		888	SNX13 "Sorting nexin-13" [Homo	0.154	0.202	0.274	8.2e-15
MGI\|MGI:2661416		957	Snx13 "sorting nexin 13" [Mus	0.154	0.188	0.252	9.9e-15
UNIPROTKB\|Q9Y5W8		968	SNX13 "Sorting nexin-13" [Homo	0.154	0.185	0.274	1.2e-14
RGD\|1309778		958	Snx13 "sorting nexin 13" [Ratt	0.154	0.187	0.252	1.3e-14
UNIPROTKB\|E1C7R8		880	SNX13 "Uncharacterized protein	0.153	0.202	0.25	2e-14
UNIPROTKB\|I3LUU8		957	SNX13 "Uncharacterized protein	0.154	0.188	0.274	1e-13
UNIPROTKB\|E1BZM0		996	SNX13 "Uncharacterized protein	0.153	0.178	0.25	2e-11
WB\|WBGene00013803		940	snx-13 [Caenorhabditis elegans	0.151	0.187	0.260	3.3e-11

TAIR\|locus:2037753 AT1G15240 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1347 (479.2 bits), Expect = 3.2e-268, Sum P(5) = 3.2e-268
 Identities = 283/503 (56%), Positives = 355/503 (70%)

Query:     1 MSSQRQRQVNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYF 60
             MS+Q+Q  V  RDLV+E KKRIVI+VICV GLSYLMSLTSSSVLVN+  A  LIIL RY+
Sbjct:     1 MSTQKQ-VVTIRDLVDEAKKRIVIVVICVVGLSYLMSLTSSSVLVNLTPAVLLIILFRYY 59

Query:    61 SLDFEMRRKAAAYNSKPSSE-NVVSQNKPPECPKVVERPNWRRNVNSPVVEDAIDKFTRH 119
             +LD EM+RKAAAY +KPSS  N  + NK PE PK   R +WR  VNS VVEDAID FTRH
Sbjct:    60 TLDSEMKRKAAAYTNKPSSSLNAPTLNKTPELPKAAPRSDWRSKVNSQVVEDAIDHFTRH 119

Query:   120 LVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHL 179
             L+SEWV DLWYSR+T DK+GPEELV IIN VLGE S R RN+NLIDLLTRD +++IC  +
Sbjct:   120 LISEWVLDLWYSRITPDKQGPEELVFIINDVLGELSRRFRNVNLIDLLTRDLIDIICRRV 179

Query:   180 ELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLIS 239
             ELFR  QAKIE+Q    L+ E RD E+R V+A+E+KLHPALFS E+EHKVLQ +++SLI 
Sbjct:   180 ELFRECQAKIERQQRRSLSFEDRDSELRRVMASEDKLHPALFSPESEHKVLQHIVNSLIL 239

Query:   240 FTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAK-GATAAQ 298
              TFRP+DL C+FF Y VREL AC V+RPVLNLANPRFINERIE+  +S  K    ++AA+
Sbjct:   240 VTFRPEDLHCAFFHYTVRELFACCVIRPVLNLANPRFINERIEAAVMSRIKTTIRSSAAE 299

Query:   299 ETSQSKPDGSSNISTDHFSRFLDPSVTGVELVQLKNDQXXXXXXXXXEDNQNGSHLSKDP 358
             E SQS  +  SN+S DHFSR++DPSVTGVELVQLKN+Q          D Q+   LSKDP
Sbjct:   300 EASQS--EDLSNVSPDHFSRYMDPSVTGVELVQLKNEQQKNSKKKSATDKQHVKELSKDP 357

Query:   359 LLSLDTRSTCSWGLLPMISQTSDEKCIQRHHSGGE-WPEKLDLISRRKTRALAPEHFDNM 417
             LLS+DTRS+ SW   P  S+  D     + H GGE W + LD++S+RKT  LAPEH +++
Sbjct:   358 LLSMDTRSSRSWNSFPSTSKIGDGSKDPQGHRGGEGWGDVLDMMSQRKTETLAPEHLESV 417

Query:   418 WTKGRNYKRKEGENWVNEQHSVLKSATA-DGSKAMEKPKEKNT--MTNVKPSMTRTTS-D 473
             W KGRNYK+KEG   V+E+     S+ A D ++     +E +   + N    ++  +S +
Sbjct:   418 WAKGRNYKKKEGGK-VDERVPPRWSSKAGDCNENTVNARESSQRKVVNTDSHLSSYSSAE 476

Query:   474 RYSDKLKIDNSFPHADWKKSNGL 496
                ++ K  +S+   D +   GL
Sbjct:   477 EDEEQTKSSHSYTSEDEETVTGL 499

GO:0005634 "nucleus" evidence=ISM

GO:0007154 "cell communication" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

UNIPROTKB\|F1PSY8 SNX13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|B8ZZT9 SNX13 "Sorting nexin-13" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2661416 Snx13 "sorting nexin 13" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y5W8 SNX13 "Sorting nexin-13" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1309778 Snx13 "sorting nexin 13" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C7R8 SNX13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LUU8 SNX13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BZM0 SNX13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

WB\|WBGene00013803 snx-13 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1163
cd06872		107	cd06872, PX_SNX19_like_plant, The phosphoinositide	6e-48
pfam02194		182	pfam02194, PXA, PXA domain	7e-48
cd06093		106	cd06093, PX_domain, The Phox Homology domain, a ph	1e-21
pfam00787		109	pfam00787, PX, PX domain	4e-19
smart00313		176	smart00313, PXA, Domain associated with PX domains	1e-14
smart00312		105	smart00312, PX, PhoX homologous domain, present in	3e-12
pfam08628		109	pfam08628, Nexin_C, Sorting nexin C terminal	5e-12
cd06873		120	cd06873, PX_SNX13, The phosphoinositide binding Ph	2e-10
cd07279		112	cd07279, PX_SNX20_21_like, The phosphoinositide bi	8e-10
cd07276		110	cd07276, PX_SNX16, The phosphoinositide binding Ph	2e-09
cd06876		133	cd06876, PX_MDM1p, The phosphoinositide binding Ph	3e-08
cd06875		116	cd06875, PX_IRAS, The phosphoinositide binding Pho	1e-07
cd06897		108	cd06897, PX_SNARE, The phosphoinositide binding Ph	2e-06
cd06870		109	cd06870, PX_CISK, The phosphoinositide binding Pho	1e-05
cd06871		120	cd06871, PX_MONaKA, The phosphoinositide binding P	1e-05
cd06883		109	cd06883, PX_PI3K_C2, The phosphoinositide binding	4e-05
cd07277		118	cd07277, PX_RUN, The phosphoinositide binding Phox	6e-05
cd06867		112	cd06867, PX_SNX41_42, The phosphoinositide binding	1e-04
cd06893		132	cd06893, PX_SNX19, The phosphoinositide binding Ph	1e-04
cd07300		114	cd07300, PX_SNX20, The phosphoinositide binding Ph	1e-04
cd06874		127	cd06874, PX_KIF16B_SNX23, The phosphoinositide bin	2e-04
cd06880		110	cd06880, PX_SNX22, The phosphoinositide binding Ph	3e-04
cd06882		123	cd06882, PX_p40phox, The phosphoinositide binding	3e-04
cd06885		104	cd06885, PX_SNX17_31, The phosphoinositide binding	0.002
cd07301		112	cd07301, PX_SNX21, The phosphoinositide binding Ph	0.004

>gnl\|CDD\|132782 cd06872, PX_SNX19_like_plant, The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins	Back alignment and domain information

 Score =  165 bits (420), Expect = 6e-48
 Identities = 67/105 (63%), Positives = 82/105 (78%)

Query: 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLP 725
           L C VLGA IVKS S++FAVY++AVTD+ N +W +KRRFR+FE LHRRLK   +YNL LP
Sbjct: 1   LSCRVLGAEIVKSGSKSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKEVPKYNLELP 60

Query: 726 PKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLS 770
           PK FLS+ LD + I+ERCKLLD+YLK LL +  V+ S EVW FLS
Sbjct: 61  PKRFLSSSLDGAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFLS 105

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. Length = 107

>gnl\|CDD\|216925 pfam02194, PXA, PXA domain	Back alignment and domain information

>gnl\|CDD\|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module	Back alignment and domain information

>gnl\|CDD\|216119 pfam00787, PX, PX domain	Back alignment and domain information

>gnl\|CDD\|214611 smart00313, PXA, Domain associated with PX domains	Back alignment and domain information

>gnl\|CDD\|214610 smart00312, PX, PhoX homologous domain, present in p47phox and p40phox	Back alignment and domain information

>gnl\|CDD\|149621 pfam08628, Nexin_C, Sorting nexin C terminal	Back alignment and domain information

>gnl\|CDD\|132783 cd06873, PX_SNX13, The phosphoinositide binding Phox Homology domain of Sorting Nexin 13	Back alignment and domain information

>gnl\|CDD\|132812 cd07279, PX_SNX20_21_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21	Back alignment and domain information

>gnl\|CDD\|132809 cd07276, PX_SNX16, The phosphoinositide binding Phox Homology domain of Sorting Nexin 16	Back alignment and domain information

>gnl\|CDD\|132786 cd06876, PX_MDM1p, The phosphoinositide binding Phox Homology domain of yeast MDM1p	Back alignment and domain information

>gnl\|CDD\|132785 cd06875, PX_IRAS, The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected	Back alignment and domain information

>gnl\|CDD\|132807 cd06897, PX_SNARE, The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi	Back alignment and domain information

>gnl\|CDD\|132780 cd06870, PX_CISK, The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase	Back alignment and domain information

>gnl\|CDD\|132781 cd06871, PX_MONaKA, The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase	Back alignment and domain information

>gnl\|CDD\|132793 cd06883, PX_PI3K_C2, The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases	Back alignment and domain information

>gnl\|CDD\|132810 cd07277, PX_RUN, The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains	Back alignment and domain information

>gnl\|CDD\|132777 cd06867, PX_SNX41_42, The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42	Back alignment and domain information

>gnl\|CDD\|132803 cd06893, PX_SNX19, The phosphoinositide binding Phox Homology domain of Sorting Nexin 19	Back alignment and domain information

>gnl\|CDD\|132833 cd07300, PX_SNX20, The phosphoinositide binding Phox Homology domain of Sorting Nexin 20	Back alignment and domain information

>gnl\|CDD\|132784 cd06874, PX_KIF16B_SNX23, The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23	Back alignment and domain information

>gnl\|CDD\|132790 cd06880, PX_SNX22, The phosphoinositide binding Phox Homology domain of Sorting Nexin 22	Back alignment and domain information

>gnl\|CDD\|132792 cd06882, PX_p40phox, The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase	Back alignment and domain information

>gnl\|CDD\|132795 cd06885, PX_SNX17_31, The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31	Back alignment and domain information

>gnl\|CDD\|132834 cd07301, PX_SNX21, The phosphoinositide binding Phox Homology domain of Sorting Nexin 21	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1163
PF02194		185	PXA: PXA domain; InterPro: IPR003114 This domain i	100.0
smart00313		176	PXA Domain associated with PX domains. unpubl. obs	100.0
PF08628		113	Nexin_C: Sorting nexin C terminal; InterPro: IPR01	99.91
cd06872		107	PX_SNX19_like_plant The phosphoinositide binding P	99.89
cd06878		127	PX_SNX25 The phosphoinositide binding Phox Homolog	99.87
cd06877		119	PX_SNX14 The phosphoinositide binding Phox Homolog	99.86
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	99.86
cd06875		116	PX_IRAS The phosphoinositide binding Phox Homology	99.86
cd06873		120	PX_SNX13 The phosphoinositide binding Phox Homolog	99.85
cd07276		110	PX_SNX16 The phosphoinositide binding Phox Homolog	99.85
cd06870		109	PX_CISK The phosphoinositide binding Phox Homology	99.84
cd07279		112	PX_SNX20_21_like The phosphoinositide binding Phox	99.84
cd07301		112	PX_SNX21 The phosphoinositide binding Phox Homolog	99.83
cd07280		120	PX_YPT35 The phosphoinositide binding Phox Homolog	99.82
cd06861		112	PX_Vps5p The phosphoinositide binding Phox Homolog	99.81
cd06897		108	PX_SNARE The phosphoinositide binding Phox Homolog	99.8
cd07300		114	PX_SNX20 The phosphoinositide binding Phox Homolog	99.8
cd06880		110	PX_SNX22 The phosphoinositide binding Phox Homolog	99.8
cd06882		123	PX_p40phox The phosphoinositide binding Phox Homol	99.79
cd06886		106	PX_SNX27 The phosphoinositide binding Phox Homolog	99.79
cd06871		120	PX_MONaKA The phosphoinositide binding Phox Homolo	99.79
cd07277		118	PX_RUN The phosphoinositide binding Phox Homology	99.78
cd06898		113	PX_SNX10 The phosphoinositide binding Phox Homolog	99.78
cd07281		124	PX_SNX1 The phosphoinositide binding Phox Homology	99.78
cd06862		125	PX_SNX9_18_like The phosphoinositide binding Phox	99.78
cd06867		112	PX_SNX41_42 The phosphoinositide binding Phox Homo	99.78
cd07295		116	PX_Grd19 The phosphoinositide binding Phox Homolog	99.78
cd06859		114	PX_SNX1_2_like The phosphoinositide binding Phox H	99.78
cd06894		123	PX_SNX3_like The phosphoinositide binding Phox Hom	99.77
cd07293		123	PX_SNX3 The phosphoinositide binding Phox Homology	99.77
cd06865		120	PX_SNX_like The phosphoinositide binding Phox Homo	99.77
cd07286		127	PX_SNX18 The phosphoinositide binding Phox Homolog	99.77
cd07282		124	PX_SNX2 The phosphoinositide binding Phox Homology	99.77
cd06864		129	PX_SNX4 The phosphoinositide binding Phox Homology	99.77
cd06860		116	PX_SNX7_30_like The phosphoinositide binding Phox	99.77
cd06876		133	PX_MDM1p The phosphoinositide binding Phox Homolog	99.76
cd06868		120	PX_HS1BP3 The phosphoinositide binding Phox Homolo	99.76
cd06863		118	PX_Atg24p The phosphoinositide binding Phox Homolo	99.76
cd07283		116	PX_SNX30 The phosphoinositide binding Phox Homolog	99.75
cd06883		109	PX_PI3K_C2 The phosphoinositide binding Phox Homol	99.75
cd06866		105	PX_SNX8_Mvp1p_like The phosphoinositide binding Ph	99.75
cd07285		126	PX_SNX9 The phosphoinositide binding Phox Homology	99.75
cd07294		132	PX_SNX12 The phosphoinositide binding Phox Homolog	99.74
cd06881		117	PX_SNX15_like The phosphoinositide binding Phox Ho	99.74
cd06893		132	PX_SNX19 The phosphoinositide binding Phox Homolog	99.74
cd06874		127	PX_KIF16B_SNX23 The phosphoinositide binding Phox	99.74
cd06885		104	PX_SNX17_31 The phosphoinositide binding Phox Homo	99.74
cd07284		116	PX_SNX7 The phosphoinositide binding Phox Homology	99.73
cd07287		118	PX_RPK118_like The phosphoinositide binding Phox H	99.72
cd06884		111	PX_PI3K_C2_68D The phosphoinositide binding Phox H	99.7
cd07288		118	PX_SNX15 The phosphoinositide binding Phox Homolog	99.7
cd06879		138	PX_UP1_plant The phosphoinositide binding Phox Hom	99.69
cd06895		140	PX_PLD The phosphoinositide binding Phox Homology	99.69
cd06888		119	PX_FISH The phosphoinositide binding Phox Homology	99.68
cd06869		119	PX_UP2_fungi The phosphoinositide binding Phox Hom	99.67
cd06093		106	PX_domain The Phox Homology domain, a phosphoinosi	99.65
cd07289		109	PX_PI3K_C2_alpha The phosphoinositide binding Phox	99.65
cd07296		135	PX_PLD1 The phosphoinositide binding Phox Homology	99.65
cd06887		118	PX_p47phox The phosphoinositide binding Phox Homol	99.63
smart00312		105	PX PhoX homologous domain, present in p47phox and	99.63
cd06890		112	PX_Bem1p The phosphoinositide binding Phox Homolog	99.6
PF00787		113	PX: PX domain; InterPro: IPR001683 The PX (phox) d	99.6
cd07290		109	PX_PI3K_C2_beta The phosphoinositide binding Phox	99.59
cd06891		140	PX_Vps17p The phosphoinositide binding Phox Homolo	99.48
KOG2527		144	consensus Sorting nexin SNX11 [Intracellular traff	99.47
cd07297		130	PX_PLD2 The phosphoinositide binding Phox Homology	99.41
cd06889		121	PX_NoxO1 The phosphoinositide binding Phox Homolog	99.33
cd07291		141	PX_SNX5 The phosphoinositide binding Phox Homology	99.32
cd07292		141	PX_SNX6 The phosphoinositide binding Phox Homology	99.32
cd06892		141	PX_SNX5_like The phosphoinositide binding Phox Hom	99.27
KOG2273		503	consensus Membrane coat complex Retromer, subunit	99.08
cd06896		101	PX_PI3K_C2_gamma The phosphoinositide binding Phox	99.06
KOG2528		490	consensus Sorting nexin SNX9/SH3PX1 and related pr	98.92
KOG2101		362	consensus Intermediate filament-like protein, sort	98.66
KOG3784		407	consensus Sorting nexin protein SNX27 [General fun	98.39
COG5391		524	Phox homology (PX) domain protein [Intracellular t	98.38
KOG0905		1639	consensus Phosphoinositide 3-kinase [Signal transd	97.99
KOG4773		386	consensus NADPH oxidase [Energy production and con	97.61
cd07298		115	PX_RICS The phosphoinositide binding Phox Homology	97.47
cd07299		113	PX_TCGAP The phosphoinositide binding Phox Homolog	97.02
cd07278		114	PX_RICS_like The phosphoinositide binding Phox Hom	96.96
KOG2101		362	consensus Intermediate filament-like protein, sort	92.84

>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains	Back alignment and domain information

Probab=100.00  E-value=1e-34  Score=305.94  Aligned_cols=179  Identities=33%  Similarity=0.618  Sum_probs=158.2

Q ss_pred             ChHHHHHHHHHHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 001075          106 SPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT  185 (1163)
Q Consensus       106 sp~Vd~~L~~li~~IIrDfV~~~WY~~IS~D~eF~~elr~~L~~~i~~l~~Rl~~VD~~~lL~~~lv~ll~~Hl~~fr~A  185 (1163)
                      ||.|+++|++++++|+||||. +||+.||+|++|+++++..|++++.++..|+++||++++++.+++++++.|++.||.|
T Consensus         1 s~~vd~~l~~li~~I~rdfV~-sWY~~Is~d~~F~~ei~~~l~~~~~~l~~R~~~vD~~~ll~~~l~~~l~~Hl~~~r~a   79 (185)
T PF02194_consen    1 SPEVDEALHELIDLILRDFVN-SWYSKISPDPEFPNEIRRILRHALRELSQRLSRVDLVKLLLDDLLPILTKHLRDYREA   79 (185)
T ss_pred             ChHHHHHHHHHHHHHHHHHHH-hhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999995 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCchhhhhhHHHHHHHH--hcc-CCCcc-cCChHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHH
Q 001075          186 QAKIEKQHSEPLTIERRDIEIRCVLA--AEN-KLHPA-LFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLA  261 (1163)
Q Consensus       186 ~~~i~~~~~~~ls~E~~d~~l~~~la--~~~-~LHpa-L~s~e~E~~yLR~l~e~LL~~LLP~~d~~s~~~r~LlREILa  261 (1163)
                      +++.+.........+  ....+.+.+  ... .+||| +.+++.|.+|||.+++.||+.+||+++.+|++++.|+|||||
T Consensus        80 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~a~~~~~~~e~~ylr~l~~~ll~~llp~~~~~s~~~~~l~rEILa  157 (185)
T PF02194_consen   80 RERLSEDSSSSSQSE--SSELDLFIASEYEKAHLHPAVLSSPESELEYLRKLSERLLPFLLPPEELSSPPVRLLLREILA  157 (185)
T ss_pred             Hhhhccccccccccc--hhhhHHHHHHhccccCCCchhccccchHHHHHHHHHHHHHHHHCChhhccccHHHHHHHHHHH
Confidence            998843222111111  222333333  233 49999 889999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcc-cCChhHHHHHHHHHHHH
Q 001075          262 CAVMRPVLN-LANPRFINERIESLAVS  287 (1163)
Q Consensus       262 ~~VL~Pli~-LSdPD~INq~Ii~ll~~  287 (1163)
                      |+||.|+|+ +|||||||++|++++++
T Consensus       158 ~~VL~p~i~~lsdPd~iN~~ii~~~~~  184 (185)
T PF02194_consen  158 CQVLLPLIDKLSDPDFINQLIIKLLEK  184 (185)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            999999999 99999999999999864

The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.

>smart00313 PXA Domain associated with PX domains	Back alignment and domain information

>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family	Back alignment and domain information

>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins	Back alignment and domain information

>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25	Back alignment and domain information

>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected	Back alignment and domain information

>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13	Back alignment and domain information

>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16	Back alignment and domain information

>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase	Back alignment and domain information

>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21	Back alignment and domain information

>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21	Back alignment and domain information

>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35	Back alignment and domain information

>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p	Back alignment and domain information

>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi	Back alignment and domain information

>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20	Back alignment and domain information

>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22	Back alignment and domain information

>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase	Back alignment and domain information

>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27	Back alignment and domain information

>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase	Back alignment and domain information

>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains	Back alignment and domain information

>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10	Back alignment and domain information

>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1	Back alignment and domain information

>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18	Back alignment and domain information

>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42	Back alignment and domain information

>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19	Back alignment and domain information

>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2	Back alignment and domain information

>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins	Back alignment and domain information

>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3	Back alignment and domain information

>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins	Back alignment and domain information

>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18	Back alignment and domain information

>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2	Back alignment and domain information

>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4	Back alignment and domain information

>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30	Back alignment and domain information

>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p	Back alignment and domain information

>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3	Back alignment and domain information

>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein	Back alignment and domain information

>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30	Back alignment and domain information

>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases	Back alignment and domain information

>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p	Back alignment and domain information

>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9	Back alignment and domain information

>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12	Back alignment and domain information

>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins	Back alignment and domain information

>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19	Back alignment and domain information

>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23	Back alignment and domain information

>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31	Back alignment and domain information

>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7	Back alignment and domain information

>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins	Back alignment and domain information

>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein	Back alignment and domain information

>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15	Back alignment and domain information

>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins	Back alignment and domain information

>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D	Back alignment and domain information

>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein	Back alignment and domain information

>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins	Back alignment and domain information

>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module	Back alignment and domain information

>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases	Back alignment and domain information

>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1	Back alignment and domain information

>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase	Back alignment and domain information

>smart00312 PX PhoX homologous domain, present in p47phox and p40phox	Back alignment and domain information

>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p	Back alignment and domain information

>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]	Back alignment and domain information

>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases	Back alignment and domain information

>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p	Back alignment and domain information

>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2	Back alignment and domain information

>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1	Back alignment and domain information

>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5	Back alignment and domain information

>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6	Back alignment and domain information

>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6	Back alignment and domain information

>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases	Back alignment and domain information

>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]	Back alignment and domain information

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4773 consensus NADPH oxidase [Energy production and conversion]	Back alignment and domain information

>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS	Back alignment and domain information

>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein	Back alignment and domain information

>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins	Back alignment and domain information

>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1163
3p0c_A		130	Nischarin; structural genomics, structural genomic	8e-24
1xte_A		154	Serine/threonine-protein kinase SGK3; CISK, PX dom	3e-23
2v14_A		134	Kinesin-like motor protein C20ORF23; plus-END kine	9e-21
2ett_A		128	Sorting nexin-22; PX domain, BC019655, SNX22_human	8e-19
2wwe_A		127	Phosphoinositide-3-kinase, class 2, gamma polypept	8e-18
2l73_A		149	NADPH oxidase organizer 1; cell membrane, PX domai	4e-17
2ar5_A		121	Phosphoinositide 3-kinase; PX domain, transferase;	1e-16
1kq6_A		141	NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha	4e-16
1h6h_A		143	Neutrophil cytosol factor 4; PX domain; HET: PIB;	5e-16
2iwl_X		140	Phosphatidylinositol-4-phosphate 3-kinase C2 domai	1e-15
3lui_A		115	Sorting nexin-17, SNX17; PX domain, endosome, phos	3e-15
2v6v_A		156	BUD emergence protein 1; homotypic fusion, regulat	5e-13
1kmd_A		117	VAM7P, vacuolar morphogenesis protein VAM7; PX dom	5e-13
3iq2_A		138	Sorting nexin-7; SNX7, PHOX, protein signalling, S	3e-11
2csk_A		146	Sorting nexin 12; SNX12, PX domain, structural gen	3e-10
1ocs_A		162	Sorting nexin GRD19; sorting protein, PX-domain, y	4e-08
2i4k_A		128	Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3dyt_A		366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	3e-07
4akv_A		386	Sorting nexin-33; transport protein, organelle bio	5e-06

>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130	Back alignment and structure

 Score = 97.2 bits (242), Expect = 8e-24
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 644 PENHSSTVNPVQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRR 703
             +HSS V+    +L   S       V+G+ +V +    + VY I VTD  ++ W++K R
Sbjct: 4   HHHHSSGVDLGTENLYFQSM---EARVVGSELVDT----YTVYIIQVTD-GSHEWTVKHR 55

Query: 704 FRHFEELHRRLK-FFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGS 762
           +  F +LH +L    +     LPPK  +      S++++R K L+ YL+ LL        
Sbjct: 56  YSDFHDLHEKLVAERKIDKNLLPPKKIIGK-NSRSLVEKREKDLEVYLQKLLAAFPGVTP 114

Query: 763 IEVWDFLSVDS 773
             +  FL    
Sbjct: 115 RVLAHFLHFHF 125

PyMOL of 3p0c

>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154	Back alignment and structure

>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134	Back alignment and structure

>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128	Back alignment and structure

>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} Length = 127	Back alignment and structure

>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} Length = 149	Back alignment and structure

>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A Length = 121	Back alignment and structure

>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A Length = 141	Back alignment and structure

>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Length = 143	Back alignment and structure

>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Length = 140	Back alignment and structure

>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115	Back alignment and structure

>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A Length = 156	Back alignment and structure

>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 Length = 117	Back alignment and structure

>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Length = 138	Back alignment and structure

>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 146	Back alignment and structure

>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Length = 162	Back alignment and structure

>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Length = 128	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366	Back alignment and structure

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1163
1xte_A		154	Serine/threonine-protein kinase SGK3; CISK, PX dom	99.83
3iq2_A		138	Sorting nexin-7; SNX7, PHOX, protein signalling, S	99.82
3p0c_A		130	Nischarin; structural genomics, structural genomic	99.81
2v14_A		134	Kinesin-like motor protein C20ORF23; plus-END kine	99.8
3lui_A		115	Sorting nexin-17, SNX17; PX domain, endosome, phos	99.8
2csk_A		146	Sorting nexin 12; SNX12, PX domain, structural gen	99.8
1ocs_A		162	Sorting nexin GRD19; sorting protein, PX-domain, y	99.79
4az9_A		129	Sorting nexin-24; protein transport; 1.75A {Homo s	99.78
1h6h_A		143	Neutrophil cytosol factor 4; PX domain; HET: PIB;	99.78
2ar5_A		121	Phosphoinositide 3-kinase; PX domain, transferase;	99.77
2i4k_A		128	Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al	99.77
1kmd_A		117	VAM7P, vacuolar morphogenesis protein VAM7; PX dom	99.75
2ett_A		128	Sorting nexin-22; PX domain, BC019655, SNX22_human	99.75
1kq6_A		141	NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha	99.74
2iwl_X		140	Phosphatidylinositol-4-phosphate 3-kinase C2 domai	99.72
2l73_A		149	NADPH oxidase organizer 1; cell membrane, PX domai	99.7
2v6v_A		156	BUD emergence protein 1; homotypic fusion, regulat	99.67
4akv_A		386	Sorting nexin-33; transport protein, organelle bio	99.64
3dyt_A		366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	99.63
3hpc_X		161	SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph	99.56
2wwe_A		127	Phosphoinositide-3-kinase, class 2, gamma polypept	99.53
2dyb_A		341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.47

>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A	Back alignment and structure

Probab=99.83  E-value=1e-20  Score=193.14  Aligned_cols=108  Identities=24%  Similarity=0.479  Sum_probs=101.0

Q ss_pred             eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCC-CCCHHHHHHH
Q 001075          665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLST-GLDVSVIQER  742 (1163)
Q Consensus       665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~-n~~~~flEkR  742 (1163)
                      .+.|+|++++.+.+|++.|++|.|+|+.. +..|.|+||||||.+||++|++ |+...++||+|++| + +++++|+|+|
T Consensus         7 ~~~v~I~~~~~~~~~~~~~~~Y~I~v~~~-~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP~K~~~-g~~~~~~~ie~R   84 (154)
T 1xte_A            7 CPSVSIPSSDEHREKKKRFTVYKVLVSVG-RSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIF-GDNFDPDFIKQR   84 (154)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCS-SCTTCHHHHHHH
T ss_pred             CCEEEECCcEEEecCCCCEEEEEEEEEEC-CEEEEEEeeHHHHHHHHHHHHHHCCCCcccCCCcccc-CCCCCHHHHHHH
Confidence            46899999999888889999999999987 8899999999999999999997 88766779999999 7 8999999999


Q ss_pred             HHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075          743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ  774 (1163)
Q Consensus       743 r~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~  774 (1163)
                      |.+||.||+.|+.+|.+++++.|+.||+.+..
T Consensus        85 r~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~  116 (154)
T 1xte_A           85 RAGLNEFIQNLVRYPELYNHPDVRAFLQMDSP  116 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCG
T ss_pred             HHHHHHHHHHHHcChhhccChHHHHHhCCCCC
Confidence            99999999999999999999999999999865

PyMOL of 1xte

>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}	Back alignment and structure

>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}	Back alignment and structure

>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}	Back alignment and structure

>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A	Back alignment and structure

>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*	Back alignment and structure

>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}	Back alignment and structure

>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1	Back alignment and structure

>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A	Back alignment and structure

>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}	Back alignment and structure

>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1	Back alignment and structure

>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}	Back alignment and structure

>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A	Back alignment and structure

>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}	Back alignment and structure

>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}	Back alignment and structure

>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A	Back alignment and structure

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}	Back alignment and structure

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*	Back alignment and structure

>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A	Back alignment and structure

>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}	Back alignment and structure

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1163
d1xtea_		116	d.189.1.1 (A:) Serine/threonine-protein kinase Sgk	2e-17
d1kq6a_		140	d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo	9e-14
d1h6ha_		143	d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo	5e-13
d1kmda_		117	d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces	9e-12
d1ocsa_		132	d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast	5e-08

>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Serine/threonine-protein kinase Sgk3, Cisk
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 673 ANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRL-KFFQEYNLHLPPKHFLS 731
           ++  +   + F VY + V+    + W + RR+  F++L+  L K F    L +P K    
Sbjct: 12  SDEHREKKKRFTVYKVLVS-VGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFG 70

Query: 732 TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773
              D   I++R   L+ +++ L++ P +    +V  FL +DS
Sbjct: 71  DNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDS 112

PyMOL of d1xtea_

>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 140	Back information, alignment and structure

>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143	Back information, alignment and structure

>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117	Back information, alignment and structure

>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 132	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1163
d1xtea_		116	Serine/threonine-protein kinase Sgk3, Cisk {Mouse	99.8
d1ocsa_		132	Sorting nexin grd19 {Baker's yeast (Saccharomyces	99.71
d1h6ha_		143	p40phox NADPH oxidase {Human (Homo sapiens) [TaxId	99.71
d1kmda_		117	Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T	99.68
d1kq6a_		140	p47phox NADPH oxidase {Human (Homo sapiens) [TaxId	99.67
d1htjf_		182	Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [	83.53

>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Serine/threonine-protein kinase Sgk3, Cisk
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.7e-20  Score=176.37  Aligned_cols=107  Identities=24%  Similarity=0.504  Sum_probs=96.0

Q ss_pred             EEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCCCCCHHHHHHHHHH
Q 001075          667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCKL  745 (1163)
Q Consensus       667 ~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~n~~~~flEkRr~~  745 (1163)
                      .+.|++++...+++++|++|.|.|+.+ +..|+|+||||||.+||++|++ |+...+++|||+.+.++++++++++||.+
T Consensus         6 ~i~I~~~~~~~~~~k~~~~Y~I~v~~~-~~~~~V~rRYsdF~~L~~~L~~~~~~~~~p~~~~~~~~~~~~~~~l~~Rr~~   84 (116)
T d1xtea_           6 SVSIPSSDEHREKKKRFTVYKVLVSVG-RSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAG   84 (116)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSSCTTCHHHHHHHHHH
T ss_pred             cEEeCCceEeccCCCCEEEEEEEEEEC-CcEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCCcccccCccCHHHHHHHHHH
Confidence            578899888888889999999999988 8899999999999999999997 88765556665555488999999999999


Q ss_pred             HHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075          746 LDRYLKMLLQLPTVSGSIEVWDFLSVDSQ  774 (1163)
Q Consensus       746 Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~  774 (1163)
                      |+.||+.|+++|.+++++.|++||+.++.
T Consensus        85 L~~yL~~l~~~~~l~~~~~~~~FL~~d~~  113 (116)
T d1xtea_          85 LNEFIQNLVRYPELYNHPDVRAFLQMDSP  113 (116)
T ss_dssp             HHHHHHHHTTCHHHHTSHHHHHHTTTTCG
T ss_pred             HHHHHHHHHhCHhhhcChHHHhhcCCCCC
Confidence            99999999999999999999999998864

PyMOL of d1xtea_

>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure