Citrus Sinensis ID: 001079

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160--

MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNVSH

cccccccccccccccccEEEEEEcccccHHHHHHHHHHccccccEEEEcccccccEEEEEEcEEEEccHHHHHcccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccEEHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEcEEEEEEEEccccccccEEEEEcccEEEcccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEccccccccccccccccccccccccEEEccccccEEEEEcccccccccccEEEEEEEEEccEEEEEEEEEEEcccccEEEEccEEEEEEcccccccccccccccccccccccccEEEEEEEcEEEEccccccccEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEEEEccccccccHHEEEEcccccccEEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEcccccEEEccccccccccccccccccccccccEEEEEEccccccHHHHHHcccccEEEEEEEccccccccccccccccccccccccccEEEEEEEEEEcccccccEEcEEEccccccccccEEEEEEEEEEccccccccccccccccc

cHcHHHHHEcccccccEEEEEEcccccHHHHHHHHHHHHccccccEEccccccccEEEEEEEEEEEccHHHHHccccccccccHccccEEEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHcccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccEEccccccEEEEEEEcccccccEEEEEEEEEEEEcccccccEEEEccccEEEEccccEEEEEEcccccccEEEEEEEEEEEEEEEEEcccccccccccHHHHccccccccEEEEcccccHcccccccccHHHcccccEEEEEEEEccccccccEEEEEcccccEEEcccEEEEEEEccccccccccccccccccccccccEEEEcccccEEcccccccccEEEEEEEEEEccccccccccccHHHHHHHHHHHEEEEEEEEcccHcHHEHHEEEEEcccccEEEEEEEEccccccEEEEEEEccHEEEEEEEEEEEEEcccccEEccccccccccccccEEEcccccEEEEEEEEEccccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEcccccccEEEEccccccccccccEEEEEEEEEHHcccccHccccHccccc

MANYLAQFQSIKSTCDRIVIAvedvsdlwptiqsgfeeqlpfkraclnnktrnpvfveklpaefilttdarlrsrfpqeqllfwfrepyATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSkahpnndqaNKMAKKVFAKLEVDfnskkrercckfdihgpepnfwEDLESKVMESIRNTLDRRVQFFEDEIRKLselrfmpvwnfCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNmngkhkefggvergddeaallnpgnkalteivqddsfrefEFRQYLFACQSKLLfklnrpfevasrgypFIISFSKALAQHEDILPFCMREVWVITACLALIDATssqyndglaapdIEKEFYRLLGDLYSLCRIKFMRLAYLIghgtdierspvnsaslsmlpwpkppvwplvpadaSAEVLAKEKLILqatprvkhfgihrkplplepsvLLREANRRRaslsagnmfeifdgsgpdvslrmspsnkVQAVSMsrtnsspgfessidrpMRLAEIFVASEHALRqtisnpnllksLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSldkglfstKERQAFQSEVISLAYgemkdpvpldvsslitfsgnpgpplelcdgdpgtlsvtvwsgfpdditvDTLSLTLMATYNADEGAKALNTstatvlkpgrntitvdlppqkpgsyvlGALTghigrlrfrshsfskvgpadsddfmsyekptrpilkvfnprplVDLAAAisspllineaQWVGIIVQPidyslkgailqidtgpgltieesHFVEMEShiklsnlenchniqkdcsldinkdferlhlhdgriqlpdwasnLTSILWIPIRAinnslargsssvtpqrqSIVDGMRTIALKLQFGVCHNQIFERtiavhftdpfhvstriadkcsdgTLLLQVILHSQVNASLTIYDAWLDLQdgfvhtrqgdgrptsgffplvisssskaGILFSIclgkttpeaeVEAVRRDSLLNIqygisgkrtigahppvtaeatgaedaREGLIFRSALVlqrpvldptlaigflalpsdglrvgqLVSMKWRVERLKDFeeneasqrnvsh

MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTrnpvfveklpaEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSkahpnndqanKMAKKVFAKLEVdfnskkrercckfdihgpepnfwedLESKVMESIRNTLDRRVQFFEDEIRKlselrfmpVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQatprvkhfgihrkplplepsvllREANRRRaslsagnmfeIFDGSGPDVSLRMSPSNKVQAvsmsrtnsspgfessidrPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNAdegakalntstatvlkpgrntitvdlppqkpGSYVLGALTGHIGRLRFRSHSFSkvgpadsddfmsyEKPTrpilkvfnprPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNslargsssvtpqrqSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGisgkrtigahppVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLalpsdglrvGQLVSMKWRVERLkdfeeneasqrnvsh

MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMlpwpkppvwplvpADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNVSH

***YLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAH*********AKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGV******AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPL*****************************************************************LAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSF****************PTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLA***********SIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERL***************

****************RIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNN*TR***FVEKLPAEFIL*****************WFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFV****************VFAKLEVDFNSKKRERCCKFD*******FWEDLESKVMESIRNTLDRRVQFFEDE***********VWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYN***********FYRLLGDLYSLCRIKFMRLAYLIG***************************************************************EPSVLLREANRRRASLSAGNMFEIFDG******************************************************SNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK******E*QAFQSEVI*************DVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLM***********LNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSF*************YEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEES*******************************FERLHLHDGRIQLPDWASNLTSILWIPIRAINN***************IVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFV***********GFFPLVISSSSKAGILFSIC****************SLLNIQYGISGKRTIG*****************GLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLK**************

MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDV**************************SIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLA**********QSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEE**********

*ANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPL***DASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGP***************************SSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLS************SLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPE*EVEAVRRDSLLNIQYGISGKRTI*AHPP*T*********REGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFE***********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKVMESIxxxxxxxxxxxxxxxxxxxxxRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNVSH

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1162	2.2.26 [Sep-21-2011]
Q556Z3		1442	Trafficking protein parti	yes	no	0.295	0.237	0.291	9e-45
Q3TLI0		1259	Trafficking protein parti	yes	no	0.262	0.242	0.258	9e-23
P48553		1259	Trafficking protein parti	yes	no	0.261	0.241	0.260	4e-21
Q9VFB7		1145	Trafficking protein parti	yes	no	0.205	0.208	0.249	2e-13

>sp\|Q556Z3\|TPC10_DICDI Trafficking protein particle complex subunit 10 OS=Dictyostelium discoideum GN=trapcc10-1 PE=3 SV=1	Back alignment and function desciption

 Score =  183 bits (464), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 196/384 (51%), Gaps = 41/384 (10%)

Query: 16  DRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSR 75
           + I I+ +D S +W  I++     LP K      KT +   VEK+P E +   D R+++ 
Sbjct: 96  EHITISYQDESSIWKYIEAELPNHLPLKNISWKTKTGHTKVVEKMPIEILQYNDERVKAH 155

Query: 76  FPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLK-LITQNDER--EWFIVFVSKAHP 132
           +  + L   +++PY  + LV C+D D +K +++ ++K  +TQ  ER  EW IV+VS    
Sbjct: 156 YDNQNL---YKKPYLYLYLVHCDDPDTYKNVVRAKIKQWVTQMTERQQEWLIVYVSLGPK 212

Query: 133 N-NDQANKMAKKVFAKLEVDFNSKKRERCCKF---DIHGP-------------------- 168
             ++  +K+ + VF +++ DFN K R+RCC+    D +                      
Sbjct: 213 RFSELTSKLTRTVFDRIKNDFNVK-RDRCCQLRFLDTNNTSSGNNKDKDNDNGGGSSGTG 271

Query: 169 -------EPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKE 221
                  + + W+D   K+ E I ++ ++ +  +EDEIRK+   R  P W++ NFF +KE
Sbjct: 272 LSTSTKQQDDLWDDFLIKMKEGIISSAEQYLTTYEDEIRKMDAKRTTPGWSYQNFFFIKE 331

Query: 222 SLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDD---EAALLNPGNK 278
            LA ++E A L+EDAL +Y ELE+ + +  N +   +    V + +       +L+   K
Sbjct: 332 GLALIYERAQLYEDALMQYFELEVLFGDPNNRSQFDQITDEVLQPNSIHCNGNILDTSFK 391

Query: 279 ALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILP 338
              +++ ++    F+F+ YLFA QSKLLF L +P E A++   FI S S  + Q+ +   
Sbjct: 392 NYRKLIYENKISLFDFKVYLFARQSKLLFLLQKPIEAATKSISFITSMSMIIKQYPNSFA 451

Query: 339 FCMREVWVITACLALIDATSSQYN 362
              +E W+ +  + LI A    ++
Sbjct: 452 PMFKESWIFSTSMELIKACQDSFD 475

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Dictyostelium discoideum (taxid: 44689)

>sp\|Q3TLI0\|TPC10_MOUSE Trafficking protein particle complex subunit 10 OS=Mus musculus GN=Trappc10 PE=2 SV=2	Back alignment and function description

>sp\|P48553\|TPC10_HUMAN Trafficking protein particle complex subunit 10 OS=Homo sapiens GN=TRAPPC10 PE=1 SV=2	Back alignment and function description

>sp\|Q9VFB7\|TPC10_DROME Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster GN=SIDL PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1162
359493878		1259	PREDICTED: uncharacterized protein LOC10	0.997	0.920	0.800	0.0
302143059		1258	unnamed protein product [Vitis vinifera]	0.996	0.920	0.798	0.0
449476735		1249	PREDICTED: trafficking protein particle	0.993	0.923	0.784	0.0
449464782		1249	PREDICTED: trafficking protein particle	0.993	0.923	0.784	0.0
356549765		1258	PREDICTED: uncharacterized protein LOC10	0.994	0.918	0.782	0.0
356544004		1249	PREDICTED: uncharacterized protein LOC10	0.989	0.920	0.780	0.0
297796315		1259	hypothetical protein ARALYDRAFT_331786 [	0.996	0.919	0.747	0.0
240256444		1259	protein CLUB [Arabidopsis thaliana] gi\|3	0.996	0.919	0.740	0.0
8885587		1280	unnamed protein product [Arabidopsis tha	0.996	0.904	0.717	0.0
255569575		1043	conserved hypothetical protein [Ricinus	0.883	0.984	0.774	0.0

>gi\|359493878\|ref\|XP_002281921.2\| PREDICTED: uncharacterized protein LOC100253761 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1952 bits (5057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 937/1171 (80%), Positives = 1041/1171 (88%), Gaps = 12/1171 (1%)

Query: 1    MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKL 60
            MANYLA FQ+IK++CDR+VIAVEDVSDLWP ++ GFEE+LPFKRACLNNKTRNPVFVEKL
Sbjct: 1    MANYLAHFQTIKNSCDRLVIAVEDVSDLWPAVKKGFEERLPFKRACLNNKTRNPVFVEKL 60

Query: 61   PAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDER 120
             AEFILTTD RLRSRFPQEQLLFWFREPYATVVLV+CEDLDEFKTILKPRLKLI QNDER
Sbjct: 61   AAEFILTTDPRLRSRFPQEQLLFWFREPYATVVLVSCEDLDEFKTILKPRLKLIVQNDER 120

Query: 121  EWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKV 180
            EW IVFVSKAHPNNDQA KMAKKV+A+LEVDF+SKKRERCCK DIH PE NFWEDLESK+
Sbjct: 121  EWCIVFVSKAHPNNDQATKMAKKVYARLEVDFSSKKRERCCKLDIHSPEANFWEDLESKI 180

Query: 181  MESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY 240
            MESIRNTLDRRVQF+EDEIRKLSE R MP+WNFCNFFILKESLAFMFEMAHLHED+LREY
Sbjct: 181  MESIRNTLDRRVQFYEDEIRKLSEQRLMPIWNFCNFFILKESLAFMFEMAHLHEDSLREY 240

Query: 241  DELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFA 300
            DELELCYLETVN+ GK ++FGG++RGDD+AALLNPGNK LT+IVQDDSFREFEFRQYLFA
Sbjct: 241  DELELCYLETVNVAGKQRDFGGIDRGDDQAALLNPGNKLLTQIVQDDSFREFEFRQYLFA 300

Query: 301  CQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQ 360
            CQSKLLFKLNRPFEVASRGYPFIISFSKALA HE +LPFCMREVWV+TACLALI+AT+S 
Sbjct: 301  CQSKLLFKLNRPFEVASRGYPFIISFSKALALHERMLPFCMREVWVVTACLALINATASH 360

Query: 361  YNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKP 420
            YNDG  APDIEKEFYR+ G+LYSLCR+KFMRLAYLIG+GT+IERSPVNSASLSML WP P
Sbjct: 361  YNDGFVAPDIEKEFYRIQGNLYSLCRVKFMRLAYLIGYGTEIERSPVNSASLSMLSWPMP 420

Query: 421  PVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGN 480
             VWP VP DAS+ VL KEK ILQATPRVKHFGI RKPLPLEPS+LLREANRRRASLSAGN
Sbjct: 421  AVWPPVPPDASSMVLEKEKTILQATPRVKHFGIQRKPLPLEPSILLREANRRRASLSAGN 480

Query: 481  MFEIF-------DGSGPDVSLRMSPSNKVQAVSMSRTNSSP-GFESSIDRPMRLAEIFVA 532
            M E+F       DGS  D SLRMSPS+KV A+SM+RTNSSP  FESSIDRPMRLAEI+VA
Sbjct: 481  MVEMFEGRPIFVDGSDSDASLRMSPSSKVHAISMTRTNSSPINFESSIDRPMRLAEIYVA 540

Query: 533  SEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCF 592
            +EHAL+ TIS+ +L KSL SVEEFE+KYLELTKGAA+NYH SWWKRHGVVLDGEIAAVC+
Sbjct: 541  AEHALQNTISDTDLWKSLLSVEEFEKKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVCY 600

Query: 593  KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652
            +HGN+D AAKSYEKVCALY+GEGWQDLLAEVLP LAECQKILND+AGYL SCVRLLSLDK
Sbjct: 601  RHGNFDLAAKSYEKVCALYAGEGWQDLLAEVLPKLAECQKILNDQAGYLSSCVRLLSLDK 660

Query: 653  GLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW 712
            GLFSTKERQAFQSEV+ LA+ EMK PVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW
Sbjct: 661  GLFSTKERQAFQSEVVRLAHSEMKHPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW 720

Query: 713  SGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGA 772
            SGFPDDIT++ LSLTL A +N DEG KAL +S A +LKPGRNTIT+ LPPQKPGSYVLG 
Sbjct: 721  SGFPDDITLEVLSLTLAAIFNVDEGVKALRSSAAPILKPGRNTITLALPPQKPGSYVLGV 780

Query: 773  LTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINE 832
            LTG IG+LRFRSHSFSK GPADSDDFMSYEKP RPILKV  PRPLVDLAAAISS LL+NE
Sbjct: 781  LTGQIGQLRFRSHSFSKGGPADSDDFMSYEKPARPILKVSKPRPLVDLAAAISSALLMNE 840

Query: 833  AQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLS----NLENCHNIQKD 888
             QWVGIIV+PI+YSLKGA+L IDTGPGL IEESH +E+E H  +S    ++E+C   +K 
Sbjct: 841  PQWVGIIVRPINYSLKGAVLYIDTGPGLKIEESHPIEIERHSDVSQSATDMESCDQARKK 900

Query: 889  CSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDG 948
             S  + ++F++L L +GRI+LPDWASN+TS++W PI AI++ LARG+SSVTPQRQSIVDG
Sbjct: 901  DSSVVIEEFKQLTLQNGRIELPDWASNITSVIWFPISAISDKLARGTSSVTPQRQSIVDG 960

Query: 949  MRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLT 1008
            MRTIALKL+FGV  NQ F+RT+AVHFTDPFHVSTR+ DKC+DGTLLLQV LHSQV A+LT
Sbjct: 961  MRTIALKLEFGVSLNQTFDRTLAVHFTDPFHVSTRVVDKCNDGTLLLQVTLHSQVKATLT 1020

Query: 1009 IYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRD 1068
            IYDAWL LQDGFVHT QGDGRPTS FFPLVI+ ++KAGILF ICLG T    E +A + +
Sbjct: 1021 IYDAWLVLQDGFVHTGQGDGRPTSDFFPLVIAPTAKAGILFCICLGTTISGDEAKAPQPE 1080

Query: 1069 SLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALP 1128
            S+LNI+YGI+G RTIGAH PVT E  G+E + + LIFRSALVLQRPV+DP LA+GFL L 
Sbjct: 1081 SVLNIRYGIAGNRTIGAHTPVTVEPAGSEGSTQDLIFRSALVLQRPVMDPCLAVGFLPLT 1140

Query: 1129 SDGLRVGQLVSMKWRVERLKDFEENEASQRN 1159
            S GLRVGQLV+MKWRVERLKDF+EN  SQ N
Sbjct: 1141 SGGLRVGQLVTMKWRVERLKDFDENAVSQNN 1171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|302143059\|emb\|CBI20354.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449476735\|ref\|XP_004154819.1\| PREDICTED: trafficking protein particle complex subunit 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449464782\|ref\|XP_004150108.1\| PREDICTED: trafficking protein particle complex subunit 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356549765\|ref\|XP_003543261.1\| PREDICTED: uncharacterized protein LOC100787264 [Glycine max]	Back alignment and taxonomy information

>gi\|356544004\|ref\|XP_003540446.1\| PREDICTED: uncharacterized protein LOC100782619 [Glycine max]	Back alignment and taxonomy information

>gi\|297796315\|ref\|XP_002866042.1\| hypothetical protein ARALYDRAFT_331786 [Arabidopsis lyrata subsp. lyrata] gi\|297311877\|gb\|EFH42301.1\| hypothetical protein ARALYDRAFT_331786 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|240256444\|ref\|NP_200255.5\| protein CLUB [Arabidopsis thaliana] gi\|332009113\|gb\|AED96496.1\| protein CLUB [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|8885587\|dbj\|BAA97517.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255569575\|ref\|XP_002525753.1\| conserved hypothetical protein [Ricinus communis] gi\|223534903\|gb\|EEF36589.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1162
TAIR\|locus:2147324		1259	CLUB "AT5G54440" [Arabidopsis	0.995	0.918	0.732	0.0
DICTYBASE\|DDB_G0273719		1442	trappc10-2 "trafficking protei	0.166	0.134	0.314	3.9e-48
DICTYBASE\|DDB_G0273209		1442	trappc10-1 "trafficking protei	0.166	0.134	0.314	3.9e-48
MGI\|MGI:1336209		1259	Trappc10 "trafficking protein	0.327	0.301	0.260	9.2e-33
UNIPROTKB\|P48553		1259	TRAPPC10 "Trafficking protein	0.327	0.301	0.256	2.4e-29
ASPGD\|ASPL0000058427		1433	AN1038 [Emericella nidulans (t	0.110	0.089	0.333	3.4e-18
FB\|FBgn0038303		1145	SIDL "Shal Interactor of Di-Le	0.202	0.205	0.258	5.2e-13

TAIR\|locus:2147324 CLUB "AT5G54440" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4448 (1570.8 bits), Expect = 0., P = 0.
 Identities = 856/1169 (73%), Positives = 979/1169 (83%)

Query:     1 MANYLAQFQSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKL 60
             MANYLAQFQ+IK++CDR+V AVEDV DLWPT++  FEE  P KRA L NKTRNPVFVE L
Sbjct:     1 MANYLAQFQTIKNSCDRLVAAVEDVCDLWPTVKGLFEEHQPLKRAFLTNKTRNPVFVENL 60

Query:    61 PAEFILTTDARLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDER 120
             P EFILTTDARLRSRFPQEQ LFWFREPYAT+VLVTCEDLDEFK ILKPRLKLI QNDER
Sbjct:    61 PVEFILTTDARLRSRFPQEQYLFWFREPYATIVLVTCEDLDEFKNILKPRLKLIVQNDER 120

Query:   121 EWFIVFVSKAHPNNDQANKMAKKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDLESKV 180
             EWFIVFVSKAHP+NDQA K  KKV+AKLEVDF+SKKRERCCK D+HGPE NFWEDLE K+
Sbjct:   121 EWFIVFVSKAHPSNDQATKNVKKVYAKLEVDFSSKKRERCCKLDVHGPEGNFWEDLELKI 180

Query:   181 MESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY 240
              E IRNTLDRR QF+EDEIRKLSE RFMP+WNFCNFFILKESLAF+FEMAHLHEDALREY
Sbjct:   181 TECIRNTLDRRAQFYEDEIRKLSEQRFMPIWNFCNFFILKESLAFIFEMAHLHEDALREY 240

Query:   241 DELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFA 300
             DELELCYLETVNM GK ++FGG +  DD+A LL PG+K LT+IVQDDSFREFEFRQYLFA
Sbjct:   241 DELELCYLETVNMPGKQRDFGGFDGEDDQAVLLKPGSKPLTQIVQDDSFREFEFRQYLFA 300

Query:   301 CQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQ 360
             CQS+LLFKLNRPFEVASRGY F+ISF+KAL  HE +LPFCMREVWVITACLALI+AT+S 
Sbjct:   301 CQSRLLFKLNRPFEVASRGYSFVISFAKALTLHESVLPFCMREVWVITACLALIEATASH 360

Query:   361 YNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMXXXXXX 420
             ++DG+ APDIEKEF+RL GDLYSL R+KFMRL YLIG+GTDIE+SP+NSA LSM      
Sbjct:   361 HHDGVVAPDIEKEFFRLQGDLYSLSRVKFMRLGYLIGYGTDIEKSPLNSACLSMLPWPKP 420

Query:   421 XXXXXXXADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGN 480
                     DAS+EVL KEK ILQAT R KHFGI RK LPLEPSVLLR ANRRRASLS GN
Sbjct:   421 AVWPSLPQDASSEVLEKEKTILQATSRTKHFGIQRKALPLEPSVLLRVANRRRASLSTGN 480

Query:   481 MFEIFDG-------SGPDVSLRMSPSNKVQAVSMSRTNSSPG-FESSIDRPMRLAEIFVA 532
             + E+FDG       SG + S R   S KVQA  MSRTNSSPG FES +DRPMRLAEIFVA
Sbjct:   481 IPEMFDGRPSFTEGSGLEASPRTPSSLKVQAPPMSRTNSSPGNFESPLDRPMRLAEIFVA 540

Query:   533 SEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCF 592
             +EHALR TIS+ +LLK+LSS+++FE KYL LTKGAA NYH SWWKRHGVVLDGEIAAVCF
Sbjct:   541 AEHALRLTISDHDLLKTLSSIQDFENKYLNLTKGAAENYHRSWWKRHGVVLDGEIAAVCF 600

Query:   593 KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652
             KHG YD AA SYEKVCALY+GEGWQDLLAEVLPNLA+CQKIL+D+AGY+ SCVRLLSLDK
Sbjct:   601 KHGKYDLAANSYEKVCALYAGEGWQDLLAEVLPNLAQCQKILDDQAGYMSSCVRLLSLDK 660

Query:   653 GLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVW 712
             GLFS+KERQAFQSEV++LA+ EMK+PVPLDVSSLITFSGN GPPL+LCDGDPG LSVTVW
Sbjct:   661 GLFSSKERQAFQSEVVTLAHSEMKNPVPLDVSSLITFSGNTGPPLQLCDGDPGNLSVTVW 720

Query:   713 SGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGA 772
             SGFPDDIT+D+LSLTL+AT N DEG +AL +S ATVL PGRNTIT  LPPQKPGSYVLG 
Sbjct:   721 SGFPDDITLDSLSLTLVATNNTDEGGQALKSSAATVLNPGRNTITFALPPQKPGSYVLGV 780

Query:   773 LTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINE 832
             +TG IGRLRFRSHSFSK GPADSDDFMSYEKPTRPILKV  PR LVDLAAA+SS LLINE
Sbjct:   781 VTGQIGRLRFRSHSFSKGGPADSDDFMSYEKPTRPILKVSKPRALVDLAAAVSSALLINE 840

Query:   833 AQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKL---SNLENCHNIQKDC 889
             AQW+GIIV+PI YSLKGAIL IDTGPGL IE+S+ +EME ++     +         +D 
Sbjct:   841 AQWIGIIVRPIAYSLKGAILHIDTGPGLKIEDSYGIEMERYMDADCDTGASKAEVFVEDS 900

Query:   890 SLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGM 949
              +   +D E L+L DG+I   DWASN++SILW+P+RA++  LARGSSSVTP +Q I++GM
Sbjct:   901 PVSSKRDSEVLNLCDGKIVFSDWASNVSSILWVPVRALSEKLARGSSSVTPLKQDILEGM 960

Query:   950 RTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTI 1009
             RT+ALKL+FGV HNQIFERTIA HFTDPF V+TR+A+KC+DGTL+LQV+LHS V A+L +
Sbjct:   961 RTVALKLEFGVHHNQIFERTIAAHFTDPFDVTTRVANKCNDGTLVLQVMLHSLVKANLIV 1020

Query:  1010 YDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDS 1069
              D WLDLQDGF+H  Q DGRPTS FFPLV+S  S+A ++FSICL K+      +    +S
Sbjct:  1021 LDVWLDLQDGFIHG-QNDGRPTSTFFPLVVSPGSRAAVVFSICLDKSMSSEGKDLQLPES 1079

Query:  1070 LLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPS 1129
             +LNI+YGI G R  GAH PV A+ +  +     L+F+SA+VLQRPVLDP L +GFL LPS
Sbjct:  1080 ILNIKYGIHGDRAAGAHRPVDADHSETDTEGRDLVFKSAIVLQRPVLDPCLTVGFLPLPS 1139

Query:  1130 DGLRVGQLVSMKWRVERLKDFEENEASQR 1158
             DGLRVG+L++M+WRVERLK+ +E+EA ++
Sbjct:  1140 DGLRVGKLITMQWRVERLKELKESEAVEQ 1168

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0000910 "cytokinesis" evidence=IMP

GO:0000919 "cell plate assembly" evidence=IMP

DICTYBASE\|DDB_G0273719 trappc10-2 "trafficking protein particle complex subunit 10" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0273209 trappc10-1 "trafficking protein particle complex subunit 10" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:1336209 Trappc10 "trafficking protein particle complex 10" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P48553 TRAPPC10 "Trafficking protein particle complex subunit 10" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000058427 AN1038 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

FB\|FBgn0038303 SIDL "Shal Interactor of Di-Leucine Motif" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1162
pfam12584		135	pfam12584, TRAPPC10, Trafficking protein particle	8e-05
pfam11817		215	pfam11817, Foie-gras_1, Foie gras liver health fam	9e-04

>gnl\|CDD\|221652 pfam12584, TRAPPC10, Trafficking protein particle complex subunit 10, TRAPPC10	Back alignment and domain information

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 1110 VLQRPVLDPTLAIGFLALPSDGL---RVGQLVSMKWRVERLKDFEENEASQ 1157
             +  PVLD   A+GFL L    L   RVG+ +    R+   + +       
Sbjct: 1    PVDVPVLDIVHAVGFLPLSPSCLTLCRVGEPIDANLRIRTSRRWSSESNPS 51

This domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1. Length = 135

>gnl\|CDD\|221243 pfam11817, Foie-gras_1, Foie gras liver health family 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1162
KOG1931		1156	consensus Putative transmembrane protein [General	100.0
KOG4386		809	consensus Uncharacterized conserved protein [Funct	99.9
PF07919		554	Gryzun: Gryzun, putative trafficking through Golgi	99.71
PF11817		247	Foie-gras_1: Foie gras liver health family 1; Inte	99.42
PF06159		249	DUF974: Protein of unknown function (DUF974); Inte	97.62
PF08626		1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	97.28
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.95
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.66
PRK10803		263	tol-pal system protein YbgF; Provisional	92.67
KOG1953		1235	consensus Targeting complex (TRAPP) subunit [Intra	91.43
PF12584		147	TRAPPC10: Trafficking protein particle complex sub	89.2
KOG1586		288	consensus Protein required for fusion of vesicles	88.84
PF12688		120	TPR_5: Tetratrico peptide repeat	87.47
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	87.17
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	86.24
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	86.23
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	86.18
PF13176		36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	85.63
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	85.39
COG1729		262	Uncharacterized protein conserved in bacteria [Fun	84.48
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	83.6
COG1470		513	Predicted membrane protein [Function unknown]	83.18
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	82.65
KOG1931		1156	consensus Putative transmembrane protein [General	82.46
PF13174		33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	81.93
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	81.18

>KOG1931 consensus Putative transmembrane protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=6.1e-117  Score=1055.02  Aligned_cols=959  Identities=26%  Similarity=0.346  Sum_probs=729.0

Q ss_pred             hhccccCCeeEEEEeCCCCChHHHHHHHHhhCCCCceeeecCCCCCeeeeeeeeeEEEccchhhccCCCcccccccccCc
Q 001079            9 QSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREP   88 (1162)
Q Consensus         9 ~~~~~~~~~v~v~y~Dp~~lf~~i~~~l~~~lPL~nlhWK~~~~~~~~I~~L~v~fv~~~d~~~~~~~p~~~~~~l~~~P   88 (1162)
                      |.|+++|++.+|.|+||||||++|+++|++++||+|+||++++++.+++.+||++|+|+.++.+...  +.|.+.++..|
T Consensus         1 ~~i~~~~~kPIvty~d~~dLf~Sl~~~~eq~lPL~~~~W~~s~~r~~~~i~L~~efi~~~e~~l~~~--~~~d~sll~~P   78 (1156)
T KOG1931|consen    1 MDIEISCGKPIVTYFDPFDLFPSLRPEFEQILPLDNIEWRRSYGRVPKVIRLPIEFIPFGEEELDQD--KSGDKSLLEFP   78 (1156)
T ss_pred             CchhhccCCceEEEeccccchhhhHHHHHhhcCCchhhhhhhcCcCCeEEEechhhhhhhhhhcccc--ccCCchhhhCc
Confidence            5799999999999999999999999999999999999999988888766679999999999887432  45678899999


Q ss_pred             eEEEEEEecCChHHHHHcchHHHHhhh----cCCCCCeEEEEEccCCC-CchhhhhhhHhHHHHHhhhcCCCCCCeEEEe
Q 001079           89 YATVVLVTCEDLDEFKTILKPRLKLIT----QNDEREWFIVFVSKAHP-NNDQANKMAKKVFAKLEVDFNSKKRERCCKF  163 (1162)
Q Consensus        89 yl~i~~v~C~d~D~YKs~vR~~lk~w~----~~~~~eWlIv~v~~~~~-~~~~s~~~~~svlDKik~DF~~k~~dRc~~l  163 (1162)
                      |+||+||.|.|+|+||++|||.+.+|+    +++.++||||+|..++. ++++..+-.+||+||||.||++|+.|||+.|
T Consensus        79 ~l~i~~v~C~D~d~YKa~vr~~~~kWlk~l~s~~~~~WmIViV~~~a~rsn~~n~~~~~sv~dKir~DF~tkq~drCv~l  158 (1156)
T KOG1931|consen   79 FLHILIVECIDIDQYKATVRPLVTKWLKNLESNSSSDWMIVIVEYAAKRSNDSNLFPVKSVMDKIRKDFPTKQTDRCVSL  158 (1156)
T ss_pred             eeEEEEEecccHHHHHHhcchHHHHHHHHhhhcCCcceEEEEEeccccccccccccchhhHHHHHhcccCCCCcceeEEe
Confidence            999999999999999999999998886    47899999999996642 2332222368999999999999999999999


Q ss_pred             cCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 001079          164 DIHG---PEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY  240 (1162)
Q Consensus       164 ~~~~---~~~~~W~~li~klK~~iL~sFd~rv~~yee~ir~~~~~R~~pgWnF~~~FilKE~LA~~fe~~gL~edAL~~Y  240 (1162)
                      +.+.   +++|+||+|++|||.++|++||+|+.+|||+||+++++|++||||||+||++||+||++|||++|+||||.||
T Consensus       159 ~~~~k~~~~~e~Wn~f~qki~~~vLss~dkr~~~~ee~iRslre~r~~~~wdF~~fFl~kE~LA~iFe~l~l~edAL~qy  238 (1156)
T KOG1931|consen  159 DRPPKERQEAEFWNQFLQKIRALVLSSLDKRLTKLEESIRSLREKRNSPGWDFCEFFLTKEKLAFIFEMLNLLEDALLQY  238 (1156)
T ss_pred             ecCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            8653   3457999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc-C-Cc-ccccCCCCCCCcc---cccCCCCChhhhhhhhcCCcchhhhHHHHHHHHHHHHHHhCChHH
Q 001079          241 DELELCYLETVNM-N-GK-HKEFGGVERGDDE---AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFE  314 (1162)
Q Consensus       241 dEL~~~f~~~v~~-~-~~-~~~f~~~~~~dd~---~~~l~~~~k~~r~lI~~~~iSlFdfR~YlFsRQ~~LLl~l~~~~E  314 (1162)
                      |||+++|++.+.. + |+ +.|||++..+||+   +.++-++.++.++.|+++.+++|+||.|+|+||+.||++++||+|
T Consensus       239 del~a~~sq~i~~~g~~k~q~~l~~f~kpd~s~~g~~ll~~gs~~~~q~i~d~~ftl~efR~yLf~~Q~~Lll~lnrp~e  318 (1156)
T KOG1931|consen  239 DELDAEFSQRIMNMGDGKLQVWLGSFSKPDDSLFGGSLLIPGSLEKTQHIQDKYFTLFEFRLYLFERQTLLLLKLNRPFE  318 (1156)
T ss_pred             HHHHHHHHHHHhcCCCccccccccccCCchhhhcCceEEecCchHHHHhhhcCceeeehHHHHHHHHHHHHHHhcCCcHH
Confidence            9999999999854 4 33 5999998877775   778888899999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhhccCCCCCCCCcchHHHHHhhhhHHHHHHHHHHHHHH
Q 001079          315 VASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAY  394 (1162)
Q Consensus       315 v~~R~~~FI~~f~~~L~~~e~~l~~~~i~~W~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~e~~~eL~~~ar~~l~~l~~  394 (1162)
                      ||+|+|+|+.+|++.+..++.++++++++||.|.+|+++++.|..   .+-..|+..+.+..++|++|.+||.++..+|.
T Consensus       319 va~r~~e~l~s~lqel~Ll~~s~~~~~~~~w~i~a~L~~~e~~~~---~~~~~~n~~t~~~~~~~~iw~~ar~kL~~m~~  395 (1156)
T KOG1931|consen  319 VASRAYELLFSFLQELSLLESSVPLGALKCWEITAALEYLEFTEV---SGPLLPNIKTELFMLCADIWSYARMKLYGMAL  395 (1156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhc---cccccccccchHHHHhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999972   12245556677899999999999999999999


Q ss_pred             HhcCCCCCcCCCcccccccCCCCCCCCCCCCCCCCchhHHHHHHhhhhccCCCccccccCCCCCCCChhHHHHHHHhhhh
Q 001079          395 LIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRA  474 (1162)
Q Consensus       395 ~~g~~~~~~~~p~rssSl~~~~~p~p~~~p~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~Lee~~~rr~  474 (1162)
                      +||..|+.  .              |.        -++++++.          .               +          
T Consensus       396 ~~~li~d~--~--------------p~--------~~se~l~~----------~---------------~----------  416 (1156)
T KOG1931|consen  396 LCGLIPDS--D--------------PN--------YKSEQLKE----------T---------------F----------  416 (1156)
T ss_pred             HhccCCCC--C--------------CC--------ccccccce----------E---------------e----------
Confidence            99997762  0              10        01222211          0               0          


Q ss_pred             ccccCccccccCCCCCCccccCCCCccchhccccccCCCCCCCCCCCcchhhhhHHHhhhhhhccCCCchHHHHhhcCHH
Q 001079          475 SLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVE  554 (1162)
Q Consensus       475 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~ALsS~e  554 (1162)
                      .+..        +.|+...                    +..+                    .+.-...++++|+.+..
T Consensus       417 ~~~~--------~l~d~r~--------------------~~~k--------------------e~~S~~~k~~~~~~~~~  448 (1156)
T KOG1931|consen  417 VLST--------GLLDNRP--------------------TLTK--------------------EALSLFNKLEEALQRIV  448 (1156)
T ss_pred             eehh--------hhhhccc--------------------Ccch--------------------hhhhhHHHHHHHHHHHH
Confidence            0000        1121111                    1000                    01124689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHh
Q 001079          555 EFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL  634 (1162)
Q Consensus       555 ~F~~~Yl~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L  634 (1162)
                      +|.++|+++.+.++..|+++.|.|.|+.++.|+|++|...+.+++|..++.++...|..++|....++++..++.|++.|
T Consensus       449 s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L  528 (1156)
T KOG1931|consen  449 SFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSILKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNIL  528 (1156)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhhhcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcCCCCCcc------------cc-CCCceee------------
Q 001079          635 NDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVP------------LD-VSSLITF------------  689 (1162)
Q Consensus       635 ~~~~dYv~~~l~LLs~~~~~~s~~eR~~y~~ell~~a~~~l~~~~~------------i~-~s~l~~~------------  689 (1162)
                      +...+|.+++.-+.+.  ..+.+..|.+++.+++++..--.....+            ++ ++..++.            
T Consensus       529 ~~~~~~~k~~~~ia~~--~~L~~~~r~h~~~k~l~~~~~~~~s~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~~  606 (1156)
T KOG1931|consen  529 GLCKAYDKTESSIAKF--HDLQELNRKHLMYKLLGLFEVFLNSKVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMDG  606 (1156)
T ss_pred             HHHHhhhhhhhHHHhh--HHHHHHHHHHHHHHHHhHHHhhhcchhhhhcccchhhhhhhhhccccceeEEeeccceeecc
Confidence            9999999998755543  3366777899999998766411000000            00 0000000            


Q ss_pred             ---ecCCC----------C-------------------------------C---------ccccCCCCeEEEEEEEeC-C
Q 001079          690 ---SGNPG----------P-------------------------------P---------LELCDGDPGTLSVTVWSG-F  715 (1162)
Q Consensus       690 ---~~~~~----------~-------------------------------~---------~~~~~~d~~~L~V~l~s~-L  715 (1162)
                         +..+.          +                               |         .+++..+++-+++++..+ +
T Consensus       607 ~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~~l~s~~v~l~gi~~~~~~~~~q~e~~s~~~iem~~~tk~dn~l~~~~~  686 (1156)
T KOG1931|consen  607 DVISQGPVDFLYKSIVVNKLILECRDIMYGEAELLSFEVILEGITFVKEFPVNQDELISLPEIEMKNPTKVDNSLQAHGL  686 (1156)
T ss_pred             eeeeccchHhhHhhhhhhhHHHHHHhhccchhhheeeeeEeeccccccccccchhhhccchhheeecCccccchhhhhhh
Confidence               00000          0                               0         000011111111111111 1


Q ss_pred             CCceEeeeEEEEEEec------ccCCCCceEEeecCceEeeCCCeEEEEEcCCCCCeeEEEEEEEEEEcceEEEeccccc
Q 001079          716 PDDITVDTLSLTLMAT------YNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSK  789 (1162)
Q Consensus       716 P~~I~id~v~l~L~~~------~~~~~~~~~l~s~~~~~LkPG~Nki~l~~~~~~~G~y~l~si~i~ig~l~F~s~~f~~  789 (1162)
                      -+++.-.+++++.+++      ....++..-.-+..++.|.||.|.+++..++..+|.|.+.+++.++|++.|+++.+. 
T Consensus       687 ~c~~~~~~l~~~~s~s~~~~~s~v~~ee~~~~~s~s~v~Lspg~N~i~~~~~~~~~g~~~~~~L~~qi~sl~f~~~q~~-  765 (1156)
T KOG1931|consen  687 NCDEYASKLSVQQSSSLESLQSPVEVEEGIGNMSCSPVSLSPGENQITFRLNAPFPGVYLLYQLCDQIGSLDFISKQSF-  765 (1156)
T ss_pred             ccccchhhcceeecccccccccchhhhcccccccccceeeccCcceeEEecCCCCCCeeeehhhhcccceEEEEccccC-
Confidence            1111112222222211      000111122336778999999999999999999999999999999999999965332 


Q ss_pred             CCCCCCCCccccccCCCCeEEEEcCCCccceeecccCCcccCceEEEEEEEEcCcccc-cceEEEEecCCCCccccccce
Q 001079          790 VGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFV  868 (1162)
Q Consensus       790 ~~p~~~~~~~~~e~~~~p~~~v~~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~~i-~~~~L~l~~~~gl~i~~~~~~  868 (1162)
                        |+..++.++++ |..+   +.+-   .+        ++.|+.|+|+.++..|...| .+..|++.|.....+..+..+
T Consensus       766 --~~~k~d~~s~~-P~~~---~~~l---~~--------lla~I~q~v~~~~~g~i~~i~~~~~l~l~ce~~~~m~~~~~T  828 (1156)
T KOG1931|consen  766 --PTKKNDQGSTE-PETK---KERL---QC--------LLAGIVQSVEDIVKGGILHIKNGLNLSLRCEKEVRMRSSENT  828 (1156)
T ss_pred             --CcccccccccC-Cccc---cchH---HH--------HHhhcceeeeeEEeccEEEecCCCcceEEecccceecccccc
Confidence              67777777777 3333   3211   12        56679999999999998888 688888888777777665432


Q ss_pred             eeeccccccccccccCccccccccccchhhhcccccceeecCCCCCCceeEEEEEEEEeeccccCCCccccCcccccccc
Q 001079          869 EMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDG  948 (1162)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~e~  948 (1162)
                      ++     .++...          +.+..++.+ +..+.+...+++...-..-++|++...|   .|+++          |
T Consensus       829 ~~-----~ae~~~----------~d~~~~~s~-~~~p~~~~~d~e~~~~~~~~ip~l~~~d---~~ss~----------h  879 (1156)
T KOG1931|consen  829 TI-----FAEAAR----------NDKNIFESL-LCTPKLIFFDFEESFISLYEIPVLNGFD---CFSSD----------H  879 (1156)
T ss_pred             cc-----cccccc----------cCccchhhh-ccccceEEecchhcccccccccccCCcc---ccccc----------c
Confidence            11     111100          002222223 5556677778877777777888875554   23222          2


Q ss_pred             ceeEEEEeeecccccceeeeEEEEEeeCCeEEEEEeeeccCCCceEEEEEEecccceeeEEecceeeccCCccccccCCC
Q 001079          949 MRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDG 1028 (1162)
Q Consensus       949 ~~~~~i~~~~~~~~~~i~~~~i~l~f~~Pf~vs~r~~s~~~~~~~~Lqv~l~s~~p~~l~i~~~~l~l~~~~~~~~~~~~ 1028 (1162)
                         ..+++.|+ |+|+++|+.|+.+|.+||+|++++++.|+|+..+|||++|+.+...+...+.++.+.+|+.+..+.+.
T Consensus       880 ---~~~kvsin-~~~s~~e~~IA~~f~~~~~vt~~l~~~~~~~~~~lqvl~~~~~~~~l~~~~~~l~~~~~~i~~q~~~~  955 (1156)
T KOG1931|consen  880 ---FNLKVSIN-LPFSQLELFIADAFLIPFDVTWRLLFECGDTFKELQVLKHLLYDYDLFKEDQILVLLPGEIRKQNDLL  955 (1156)
T ss_pred             ---ccceeEec-cchhhhheehhhheecccceeEeeehhcCcceeeHHHHHHHHHHhhhhhhceEEEecCcchhhhcCCC
Confidence               34445555 66778888999999999999999999999977799999999999999999999999999998877666


Q ss_pred             CCCccccceEecCCCeeeEEEEEeeCCCCCccccccccceeeEEEEEeecCccccc--cCCCcccccCCccccccceeEE
Q 001079         1029 RPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIG--AHPPVTAEATGAEDAREGLIFR 1106 (1162)
Q Consensus      1029 ~p~s~~~~~~l~~~~~as~~f~l~~~~~~~~~~~~~~~~~~~f~i~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1106 (1162)
                      |++ +++|++.  .+.+..-|++.|..    +..+++  +|..+++.....|-.-.  -..|-+|     --++|...|.
T Consensus       956 ~t~-S~~p~~~--~~s~~~~~il~~~~----ep~~~l--h~~~s~~~~~~~d~d~~~~~~~~r~y-----~~~~qlv~~~ 1021 (1156)
T KOG1931|consen  956 NTK-SFFPNEC--IESVVFDKILICLN----EPESIL--HSRGSAGASFVTDMDELERNLVPRTY-----TVPFQLVGFE 1021 (1156)
T ss_pred             Ccc-ccccHHH--HHHHHHHHHHHHhc----CCcccc--cccccccccccchHHhhhcccccccc-----cceecccCce
Confidence            555 7777655  56667777777764    123433  66666554444332211  2222222     2236777788


Q ss_pred             eeeeeecccCCcccccccccCCCCCccccceEEEEEEEEEeCcccccc
Q 001079         1107 SALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENE 1154 (1162)
Q Consensus      1107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~rl~~~~~~~ 1154 (1162)
                      ++|+||+.        .|+|.++++||||.+|+|+|+||||+++.+++
T Consensus      1022 ~~~dvqa~--------~~p~~~~~~~rv~~~~~mel~iTrl~el~~s~ 1061 (1156)
T KOG1931|consen 1022 PFFDVQAE--------QMPTSHDELCRVGALIGMELSITRLVELLESD 1061 (1156)
T ss_pred             eeeeeeee--------eccCcchhHHHHhhccCceEEEEeehhcccch
Confidence            88888877        34668999999999999999999999999987

>KOG4386 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []	Back alignment and domain information

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins	Back alignment and domain information

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PRK10803 tol-pal system protein YbgF; Provisional	Back alignment and domain information

>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12688 TPR_5: Tetratrico peptide repeat	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>COG1470 Predicted membrane protein [Function unknown]	Back alignment and domain information

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Back alignment and domain information

>KOG1931 consensus Putative transmembrane protein [General function prediction only]	Back alignment and domain information

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1162
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1kt0_A		457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 65.3 bits (158), Expect = 1e-10
 Identities = 81/630 (12%), Positives = 178/630 (28%), Gaps = 164/630 (26%)

Query: 17  RIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPV--FVEKLPA---EFILTTDAR 71
           + +++ E++  +   +              L +K    V  FVE++     +F+++    
Sbjct: 43  KSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS---P 97

Query: 72  LRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLITQNDEREWFIVFVSKAH 131
           +++   Q  ++      Y         D   F      RL+   +   R+     + +  
Sbjct: 98  IKTEQRQPSMM---TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQA----LLELR 148

Query: 132 PNNDQA-NKMA---KKVFAKLEVDFNSKKRERCCKFDIHGPEPNFWEDL-----ESKVME 182
           P  +   + +    K   A L+V   S K +    F I      FW +L        V+E
Sbjct: 149 PAKNVLIDGVLGSGKTWVA-LDV-CLSYKVQCKMDFKI------FWLNLKNCNSPETVLE 200

Query: 183 SIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDE 242
            ++  L +    +       S ++            ++  L  +   +  +E+ L     
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHS-------IQAELRRLL-KSKPYENCLLVLL- 251

Query: 243 LELCYLETVNMNGKHKEFGG------VERGDDEAALLNPGNKALTEIVQDD---SFREFE 293
             +   +  N       F          R       L+      T I  D    +    E
Sbjct: 252 -NVQNAKAWNA------FNLSCKILLTTRFKQVTDFLSAATT--THISLDHHSMTLTPDE 302

Query: 294 FRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLAL 353
            +  L          L  P E      P  +S      +          + W    C  L
Sbjct: 303 VKSLLLKYLDCRPQDL--PRE-VLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKL 355

Query: 354 IDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLS 413
                S  N  L  P   ++ +  L        + F               + + +  LS
Sbjct: 356 TTIIESSLNV-L-EPAEYRKMFDRLS-------V-FP------------PSAHIPTILLS 393

Query: 414 MLPWPKPPVWPLVPADASAEVLAK--EKLILQATPRVKHFGIH------RKPLPLEPSV- 464
           ++       W  V       V+ K  +  +++  P+     I       +  L  E ++ 
Sbjct: 394 LI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 465 --LLREANRRRAS---------------------LSAGNMFEIFDG-------------- 487
             ++   N  +                       L      E                  
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 488 ---SGPDVSLRMSPSNKVQAVSMSR---TNSSPGFESSIDRPM----RLAEIFVASEHA- 536
                   +   S  N +Q +   +    ++ P +E  ++  +    ++ E  + S++  
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 537 -LRQTISNPNLLKSLSSVEEFEQKYLELTK 565
            LR  +   +      ++  FE+ + ++ +
Sbjct: 567 LLRIALMAED-----EAI--FEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1162
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	94.53
2v5f_A		104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.19
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	94.16
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	93.1
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	93.04
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	92.94
3k9i_A		117	BH0479 protein; putative protein binding protein,	92.6
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	92.23
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	92.11
2xev_A		129	YBGF; tetratricopeptide, alpha-helical, metal bind	92.11
4ga2_A		150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	91.21
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	90.05
2qfc_A		293	PLCR protein; TPR, HTH, transcription regulation;	89.95
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	89.82
2l6j_A		111	TPR repeat-containing protein associated with HSP;	89.65
2kck_A		112	TPR repeat; tetratricopeptide repeat, structural g	88.78
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	88.58
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	88.58
1elr_A		131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	88.54
4gcn_A		127	Protein STI-1; structural genomics, PSI-biology, m	88.42
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	88.29
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	88.12
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	87.83
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	87.82
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	87.79
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	87.65
3sz7_A		164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	87.56
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	87.48
2dba_A		148	Smooth muscle cell associated protein-1, isoform 2	87.25
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	87.05
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	87.03
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	86.3
4gcn_A		127	Protein STI-1; structural genomics, PSI-biology, m	85.88
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	85.78
1elw_A		118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	85.68
3upv_A		126	Heat shock protein STI1; TPR-fold, adaptor protein	85.27
2kat_A		115	Uncharacterized protein; NESG, structure, structur	84.99
3ma5_A		100	Tetratricopeptide repeat domain protein; NESG, str	84.25
4ga2_A		150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	84.25
2l6j_A		111	TPR repeat-containing protein associated with HSP;	84.19
2vyi_A		131	SGTA protein; chaperone, TPR repeat, phosphoprotei	84.1
2lni_A		133	Stress-induced-phosphoprotein 1; structural genomi	84.06
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	83.97
3qky_A		261	Outer membrane assembly lipoprotein YFIO; membrane	83.95
1hh8_A		213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	83.92
4gco_A		126	Protein STI-1; structural genomics, PSI-biology, m	83.63
1na0_A		125	Designed protein CTPR3; de novo protein; HET: IPT;	83.35
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	83.0
3q49_B		137	STIP1 homology and U box-containing protein 1; E3	82.81
2xcb_A		142	PCRH, regulatory protein PCRH; protein transport,	81.7
4gco_A		126	Protein STI-1; structural genomics, PSI-biology, m	81.57
3rkv_A		162	Putative peptidylprolyl isomerase; structural geno	81.06
2yhc_A		225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	80.39
3gyz_A		151	Chaperone protein IPGC; asymmetric homodimer, tetr	80.14

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

Probab=94.53  E-value=0.23  Score=46.92  Aligned_cols=86  Identities=14%  Similarity=0.057  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh---
Q 001079          563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG---  639 (1162)
Q Consensus       563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d---  639 (1162)
                      ...+|+..+...+.......+...+|..|+.+|+|++|..+|..++..+...+.......++..++.|+..+++.++   
T Consensus        31 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  110 (164)
T 3ro3_A           31 AHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  110 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            44555566665554444445688899999999999999999999999999888888778888899999998888754   


Q ss_pred             HHHHHHHHh
Q 001079          640 YLLSCVRLL  648 (1162)
Q Consensus       640 Yv~~~l~LL  648 (1162)
                      |...++++.
T Consensus       111 ~~~~a~~~~  119 (164)
T 3ro3_A          111 YHLKHLAIA  119 (164)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

PyMOL of 3ro3

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A	Back alignment and structure

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}	Back alignment and structure

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A	Back alignment and structure

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}	Back alignment and structure

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}	Back alignment and structure

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A	Back alignment and structure

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*	Back alignment and structure

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1	Back alignment and structure

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}	Back alignment and structure

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*	Back alignment and structure

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}	Back alignment and structure

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*	Back alignment and structure

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A	Back alignment and structure

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}	Back alignment and structure

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}	Back alignment and structure

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A	Back alignment and structure

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1162
d1tjca_		95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.28
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	92.47
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	87.83
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	85.17
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	83.32
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	83.06
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	82.77
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	80.36

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.094  Score=45.71  Aligned_cols=69  Identities=20%  Similarity=0.127  Sum_probs=54.3

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCc-chHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCC
Q 001079          584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW-QDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK  652 (1162)
Q Consensus       584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW-~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~~  652 (1162)
                      -.+||..+|+.|||.+|+..|..++........ +.-...+|..++.|+.++++.++=+...-++|..++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P   77 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence            368999999999999999999999988775442 223458999999999999998776666655565433

PyMOL of d1tjca_

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure