Citrus Sinensis ID: 001082

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160
MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYLELCEEDLDMEEPSSTLETSDKQNVSSFPDGDGKQRGTRGVSPASPKREGKRKRGRPAGGSAKKRKSTVNLARRKRPHVRNKPSKIYQNESDESNASDETEKKEEINREENHEDREMDDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSLGMKNEKTTNPIPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW
ccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHcccHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccEEEEEcccccEEEEEEEccEEEEEEcccccccccccHHHHHHHHccccccEEEEEEEEEEEccccEEEcccHHHHHHHHHcccccccccEEEEEEEEEEEEccEEcccccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccccccccccEEEccccccccccccEEEEEEEEcccccccccccEEEEEEEccccccccccEEEEEEEcccccHHHHHHHHHHHcccccccccccccccccEEEcccccccccEEEEccccEEEEEEEccccccccccccccEEEEccEEEEEEccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHcccEEEEEcccccEEEEEEccccHHHHHHHccccEEEccHHHHHHHcccccccccccEEcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHcccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHcccEEEccccccEEEEEEccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccc
ccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHEEEEEccccccccccccccHHHHHHHHHHHHcccHcHHHHHHHHHccccccHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccEccccccccHHHHcccccHHHHHHHcccccEEEEEEEcccEEEEEEcccEEEEEEccccccccccccHHHHHHHcccccEEEEEcEEEEEccccccccccccHHHHHHHHccccccccccEEEEEEEEEEEcccccccccHHHHHHHHHHHccccccEEEEEEcccccccccccccccccEEccccHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEcHHHcccccccEEEEEEEEcccccccccHHHHEEEEEccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccEEEcccccEEEEEEEEcEEcccHHHHccccEEEcccEEEEcccccHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHccccccccccccccccccEEEEEEcccccccHHHHHHHHHHcccEEEEccccccEEEEEEccccHHHHHHcccccEEcHHHHHHHHHccccccccccEEEEccHHHHHHHHHHHccccccccEcccHHHHHHHHHHccccccccHHHHHHHHccHHHccccccccEEEEEcccEcccccHcHHcccHHHHHHEEEEHcccEEEccccccEEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHccccccHccEEEccccccEcccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccHccHHHHccccccEccccccccccccccccHccEccccccccccccccccccccccccEEEcccccccccccHEEcccccccccccccccEEHcHHcccccccccccEcccHHHHHHHHHcHcHccccccccccccHHcccccccccccccccEEcHHHHHHHHHccc
MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPsldrergsyglkeSVLANCLIDalgmskdsADAVRLINwrkggaapnagnfPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLklgiseksifhefhpdaedlfNVTCDLKLVCEKLKDRNqrhkrqdievgkavRPQLAMRIGDAHAAWRKLHGKEVVIeckfdgdriqihkngseihyfsrsfldhseyghAMSKIIEQNVLVDRCILDGEMLVWDTSLNrfaefgsnQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKvvkpskgrletlvpdhglnshvrpqgepcwslvaHNVDEVEKFFKETIENrdegivlkdlgskwepgdrsgkwlklkpeyiragsdlDVLIIGgyygsgrrgGEVAQFLVALaerpapdtyprrfisfcrvgtglsdeELDAVVTKLKPyfrkyeypkrappsfyqvtnnskerpdvwiespeksIILSITSDIRTIRSevfsapyslrfpridrvrydkpwhdcldvqSFVELVhssngttqkgkeygglqddkpkqfrssrkgekknvsivpshflqtdvsdikgetsiFSDMVFYFvnvppaysldsLHKMVVENggtfsmnlNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCcsqkkllqlqpkyylhlsdSSKKKLQEEVDEFSDLYFWDLDLADIKQLLsnvdrsedpktidyykkkycpqdkwscfhgcciyfyhsteplspdWEVLLGLALRRLKLEISfhggkvcnnlaNATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQkseeyeyslkptgmqESYLELCEedldmeepsstletsdkqnvssfpdgdgkqrgtrgvspaspkregkrkrgrpaggsakkrKSTVNLarrkrphvrnkpskiyqnesdesnasdetekkEEINreenhedremddeenLETRQTNVVEDLESLDRGKALQQEVVKDFGkekqtvrapdiemreryhskdsettdKQQVDAVQAMLLDMipslgmknekttnpipkeesssaepsaeptkkkkvSYKDIASKLLKDW
MTKTEETEVIVLVslfnwiqktkpaakkrskfrKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRkggaapnagNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLkdrnqrhkrqdievgkavrpqLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKetienrdegivlkdlgskwepgdrsgkwlklkpeyiragsdldVLIIGGYYGSGRRGGEVAQFLVALAerpapdtyprrFISFCRvgtglsdeelDAVVTKLKPYFrkyeypkrappsfyqvtnnskerpdvwiespekSIILSITSDIRTIRSevfsapyslrfpriDRVRYDKPWHDCLDVQSFVELVHSsngttqkgkeygglqddkpkqfrssrkgekknvsivpshflqtdvsdIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLlsnvdrsedpktiDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQkseeyeyslkptgmQESYLELCEEDLDMEEPSstletsdkqnvssfpdgdgkqrgtrgvspaspkregkrkrgrpaggsakkrkstvnlarrkrphvrnkpskiyqnesdesnasdetekkeeinreenhedremddeenletrqtnvvedlesldrGKALQQevvkdfgkekqtvrapdiemreryhskdsettdkqQVDAVQAMLLDMIPSLGMKNEKTtnpipkeesssaepsaeptkkkkvsykDIASKLLKDW
MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIggyygsgrrggEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSqkkllqlqpkYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVllglalrrlklEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYlelceedldmeePSSTLETSDKQNVSSFPDGDGKQRGTRGVSPAspkregkrkrgrpaggsakkrkSTVNLARRKRPHVRNKPSKIYQNESDESNASdetekkeeinreenhedreMDDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSLGMKNEKTTNPIPKeesssaepsaepTKKKKVSYKDIASKLLKDW
*******EVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLA******EKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKD*********IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVV********TLV***GLN*HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQV********DVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVH***********************************IVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLS*********EVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLA*********************************************************************************************************************************************************************************************************************************************************************
****EETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVA****************IKELNDL******************TLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGS**************DRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVE********************************************************SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQ*******************KYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVN******************KKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG*****************************************************************************************************************************************************************************************QVDAVQAMLLDMIP**********************************YKDIASKLLKDW
MTKTEETEVIVLVSLFNWIQK*********KFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDK**************VSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYLELCEED*****************************************************************RRKRPHVRNKPSKI***************************************RQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAPDIEMRE************QQVDAVQAMLLDMIPSLGMKNEKTT************************YKDIASKLLKDW
****EETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGT****************************************VSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYL*********************************************************************************************************************************************LQ*******************E*R*********TTDKQQVDAVQAMLLDMIPSLGM*************************KKKVSYKDIASKLLKDW
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMISGGLTxxxxxxxxxxxxxxxxxxxxxSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYLELCEEDLDMEEPSSTLETSDKQNVSSFPDGDGKQRGTRGVSPASPKREGKRKRGRPAGGSAKKRKSTVNLARRKRPHVRNKPSKIYQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSLGMKNEKTTNPIPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1160 2.2.26 [Sep-21-2011]
Q9LL841219 DNA ligase 4 OS=Arabidops yes no 0.968 0.921 0.614 0.0
Q7X7E91322 Putative DNA ligase 4 OS= yes no 0.518 0.454 0.654 0.0
Q5R6L3911 DNA ligase 4 OS=Pongo abe yes no 0.736 0.937 0.321 1e-125
P49917911 DNA ligase 4 OS=Homo sapi yes no 0.736 0.937 0.320 1e-124
Q8BTF7911 DNA ligase 4 OS=Mus muscu yes no 0.736 0.937 0.323 1e-121
Q90YB1912 DNA ligase 4 OS=Gallus ga yes no 0.734 0.934 0.326 1e-119
Q54CR91088 DNA ligase 4 OS=Dictyoste yes no 0.708 0.755 0.308 1e-112
Q2U6A11006 DNA ligase 4 OS=Aspergill yes no 0.721 0.832 0.284 4e-95
Q6C8A3956 DNA ligase 4 OS=Yarrowia yes no 0.632 0.767 0.315 5e-95
Q1DKE7985 DNA ligase 4 OS=Coccidioi N/A no 0.728 0.857 0.276 3e-89
>sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1 Back     alignment and function desciption
 Score = 1482 bits (3837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 769/1252 (61%), Positives = 925/1252 (73%), Gaps = 129/1252 (10%)

Query: 4    TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
            TEE +  VLVSLFNWIQK+K +++KRSKFRKFLDTYC   DYF A+RLI+PSLDRERGSY
Sbjct: 2    TEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGSY 61

Query: 64   GLKESVLANCLIDALGMSKDSADAVRLINWRKGG---AAPNAGNFPMVAAEVLQRRQGMI 120
            GLKESVLA CLIDALG+S+D+ DAVRL+NWRKGG   A  NAGNF ++AAEVLQRRQGM 
Sbjct: 62   GLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMA 121

Query: 121  SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
            SGGLTIKELNDLLDRLASSENRAEK  VLSTLI+KTNAQEMKW+I IILKDLKLG+SEKS
Sbjct: 122  SGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKS 181

Query: 181  IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
            IF EFHPDAEDLFNVTCDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLAMRIGD +AAW+
Sbjct: 182  IFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWK 241

Query: 241  KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
            KLHGK+VV ECKFDGDRIQIHKNG++IHYFSR+FLDHSEY HAMS +I QN+LVD+CILD
Sbjct: 242  KLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILD 301

Query: 301  GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKER 360
            GEMLVWDTSLNRFAEFGSNQEIAKAAR+GL S +Q LCY AFDVLYVGDTSVIHQSLKER
Sbjct: 302  GEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQ-LCYVAFDVLYVGDTSVIHQSLKER 360

Query: 361  HELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEG 420
            HELL+KVVKP KGRLE LVP+ GLN H RP GEP WS+V H   +VE+FFKET+ENRDEG
Sbjct: 361  HELLKKVVKPLKGRLEVLVPEGGLNVH-RPSGEPSWSIVVHAAADVERFFKETVENRDEG 419

Query: 421  IVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAE 480
            IVLKDL SKWEPGDRSGKW+KLKPEYIRAG+DLDVLIIGGYYGSGRRGGEVAQFLVALA+
Sbjct: 420  IVLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALAD 479

Query: 481  RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKER 540
            R   + YPRRF+SFCRVGTGLSD+EL+ VV+KLKPYFRK E+PK+APPSFYQVTN+SKER
Sbjct: 480  RAEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKER 539

Query: 541  PDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 600
            PDVWI+SPEKSIILSITSDIRTIRSEVF APYSLRFPRID+VRYDKPWH+CLDVQ+FVEL
Sbjct: 540  PDVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVEL 599

Query: 601  VHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSD 660
            V+SSNGTTQK KE    QD+ PK  +SS++GEKKNVS+VPS F+QTDVSDIKG+TSIFS+
Sbjct: 600  VNSSNGTTQKQKESESTQDN-PKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSN 658

Query: 661  MVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIH 720
            M+FYFVNVP ++SL++ HKMVVENGG FSMNLNNSVTHC+AA++ G+KY+AAKR+ DVIH
Sbjct: 659  MIFYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIH 718

Query: 721  YSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVD 780
            +SWVLDCCS+ K+L L PKY+LHL+D+S+ KLQ+++DEFSD Y+WDLDL  +KQ+LSN  
Sbjct: 719  FSWVLDCCSRNKMLPLLPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAK 778

Query: 781  RSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFH 840
            +SED K+IDYYKKK CP+ +WSC   CC+YFY  ++ LS + E LLG+  +RL LE+   
Sbjct: 779  QSEDSKSIDYYKKKLCPEKRWSCLLSCCVYFYPYSQTLSTEEEALLGIMAKRLMLEVLMA 838

Query: 841  GGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAK 900
            GGKV NNLA+A+H+VVL++    ++F  +++SF+  EK LL  K+LHVV S WLE+ L +
Sbjct: 839  GGKVSNNLAHASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLLKKRLHVVSSHWLEESLQR 898

Query: 901  EQKSEEYEYSLKPTGMQESYLELCEEDLDMEEPSSTLETSDKQNVSSFPDGDGKQRGTRG 960
            E+K  E  Y+L+P  M+ES         D EE   +    D   V+S      K+     
Sbjct: 899  EEKLCEDVYTLRPKYMEES---------DTEESDKS--EHDTTEVASQGSAQTKE----- 942

Query: 961  VSPASPKREGKRKRGRPAGGSAKKRKSTVNLARRKRPHVRNKPSKIYQNESDESNASDET 1020
              PAS K      RGR    + K+ +S+ N  +R +     +PSKI  +E++ES+AS+E 
Sbjct: 943  --PASSKIAITSSRGRSNTRAVKRGRSSTNSLQRVQRRRGKQPSKISGDETEESDASEEK 1000

Query: 1021 -----------------------------------------------EKKEEINREENHE 1033
                                                           +K  +I  +E+ E
Sbjct: 1001 VSTRLSDIAEETDSFGEAQRNSSRGKCAKRGKSRVGQTQRVQRSRRGKKAAKIGGDESDE 1060

Query: 1034 DREMDDE-----------------ENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQ 1076
            + E+D                   EN ETR+ ++ +  ES  R   +  E      +  +
Sbjct: 1061 NDELDGNNNVSADAEEGNAAGRSVENEETREPDIAKYTESQQRDNTVAVEEALQDSRNAK 1120

Query: 1077 TVRAPDIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSLGMKNEKTTNPIPKE------ 1130
            T    +++M+E+    +         D +QAML+ M P    K  +T+N    E      
Sbjct: 1121 T----EMDMKEKLQIHE---------DPLQAMLMKMFPIPSQKTTETSNRTTGEYRKANV 1167

Query: 1131 ----------------ESSSAEPSAEP------TKKKKVSYKDIASKLLKDW 1160
                            +++S    AE        KKKKVSY+D+A +LLKDW
Sbjct: 1168 SGECESSEKRKLDAETDNTSVNAGAESDVVPPLVKKKKVSYRDVAGELLKDW 1219
Efficiently joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break repair. May be involved for T-DNA integration even if not absolutely required. Seems to be dispensable under normal growth conditions.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 5EC: .EC: 1EC: .EC: 1
>sp|Q7X7E9|DNLI4_ORYSJ Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2 Back     alignment and function description
>sp|Q5R6L3|DNLI4_PONAB DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1 Back     alignment and function description
>sp|P49917|DNLI4_HUMAN DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2 Back     alignment and function description
>sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2 Back     alignment and function description
>sp|Q90YB1|DNLI4_CHICK DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2 Back     alignment and function description
>sp|Q54CR9|DNLI4_DICDI DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1 Back     alignment and function description
>sp|Q2U6A1|DNLI4_ASPOR DNA ligase 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=lig4 PE=3 SV=1 Back     alignment and function description
>sp|Q6C8A3|DNLI4_YARLI DNA ligase 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=LIG4 PE=3 SV=1 Back     alignment and function description
>sp|Q1DKE7|DNLI4_COCIM DNA ligase 4 OS=Coccidioides immitis (strain RS) GN=LIG4 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1160
2977354731163 unnamed protein product [Vitis vinifera] 0.989 0.987 0.726 0.0
2254459431162 PREDICTED: DNA ligase 4-like [Vitis vini 0.988 0.987 0.726 0.0
2241443261242 predicted protein [Populus trichocarpa] 0.988 0.923 0.668 0.0
3565562421171 PREDICTED: DNA ligase 4-like [Glycine ma 0.987 0.978 0.676 0.0
112732548 1319 DNA ligase IV [Populus nigra] 0.884 0.777 0.740 0.0
3574495991244 DNA ligase [Medicago truncatula] gi|3554 0.987 0.921 0.640 0.0
2977966051221 ATLIG4 [Arabidopsis lyrata subsp. lyrata 0.976 0.927 0.627 0.0
306968351219 DNA ligase 4 [Arabidopsis thaliana] gi|7 0.968 0.921 0.614 0.0
4494635831214 PREDICTED: DNA ligase 4-like [Cucumis sa 0.988 0.944 0.624 0.0
88438181184 unnamed protein product [Arabidopsis tha 0.937 0.918 0.590 0.0
>gi|297735473|emb|CBI17913.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1695 bits (4390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 849/1169 (72%), Positives = 977/1169 (83%), Gaps = 21/1169 (1%)

Query: 5    EETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYG 64
            EET+  VL SLF WIQ+++ +AKKRSKFR FLDT+C +   FSA+RLILP+LDRERGSYG
Sbjct: 3    EETKFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGSYG 62

Query: 65   LKESVLANCLIDALGMSKDSADAVRLINWRKGGA--APNAGNFPMVAAEVLQRRQGMISG 122
            LKESVLA CLIDALGMS++S DA+RLINWRKGGA    NAGNF MVAAEVLQRRQGM SG
Sbjct: 63   LKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMTSG 122

Query: 123  GLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIF 182
            GLTIKELNDLLD LASSENR EK SVLSTLIKKTNAQEMKWI+MIILKDLKLGISEKSIF
Sbjct: 123  GLTIKELNDLLDCLASSENRTEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGISEKSIF 182

Query: 183  HEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKL 242
            HEFHPDAEDLFNVTCDLKLVCEKLKDR+QRHKRQDIEVGKAVRPQLAMR+ DA AAW+KL
Sbjct: 183  HEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVADATAAWKKL 242

Query: 243  HGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGE 302
            HGKEVV+ECKFDGDRIQIHKNG EIH+FSR+FLDH EY +AMS I+ QN+LVDRCILDGE
Sbjct: 243  HGKEVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKYAMSNIVAQNLLVDRCILDGE 302

Query: 303  MLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHE 362
            MLVWD SLNRFAEFGSNQEIAKAA++GL SDRQVL Y AFD+LYVGDTSVIHQ+LKERHE
Sbjct: 303  MLVWDISLNRFAEFGSNQEIAKAAKEGLDSDRQVLSYVAFDILYVGDTSVIHQTLKERHE 362

Query: 363  LLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIV 422
            LLQKVVKP KGR E LVP  GLN+H RP GEPCWSL+A++VD+VE+FFK+T+ENRDEGIV
Sbjct: 363  LLQKVVKPLKGRFEILVPSGGLNTH-RPSGEPCWSLIAYDVDDVERFFKKTVENRDEGIV 421

Query: 423  LKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERP 482
            LKDLGSKWEP DRSGKWLKLKPEY+ AGSDLDVLIIGGYYGSGRRGGEVAQFLV LA+  
Sbjct: 422  LKDLGSKWEPSDRSGKWLKLKPEYVHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADHS 481

Query: 483  APDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPD 542
             PDTYPRRFISFCRVGTGLSD+ELDAVVTKLKPYFRK EYPK+APPSFYQVTNNSKERPD
Sbjct: 482  GPDTYPRRFISFCRVGTGLSDDELDAVVTKLKPYFRKNEYPKKAPPSFYQVTNNSKERPD 541

Query: 543  VWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVH 602
            +WI+SPEKSIILSITSDIRTIRSEVF+APYSLRFPRID VRYDKPWH+CLDVQSF+ELVH
Sbjct: 542  IWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDCVRYDKPWHECLDVQSFMELVH 601

Query: 603  SSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMV 662
            SSNGTTQ+G +YG +QD KPK+ +SS+KGE+K   +VPSHF+QTDV+++KGET IFS+M+
Sbjct: 602  SSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPSHFMQTDVTNVKGETLIFSNMM 661

Query: 663  FYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYS 722
            FYFVN PP +SLDSLHK+VVENGGTFSMNLNNSVTHCVAA +KG+KY+AAK RGD+IH S
Sbjct: 662  FYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVAAQSKGIKYQAAKLRGDIIHCS 721

Query: 723  WVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRS 782
            WV DCCSQKKLL LQPKY+L LS+ SKKKLQEE+D+FSD Y+ DLD++DIKQLLSNVDRS
Sbjct: 722  WVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKFSDSYYQDLDISDIKQLLSNVDRS 781

Query: 783  EDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGG 842
            ++ KTIDYYK KYCP++KWS FH CCI F+ S +  + DWE+L  LALRR+KLE+S  GG
Sbjct: 782  DNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQSSNSDWELLSKLALRRMKLEVSMGGG 841

Query: 843  KVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQ 902
            KV NNL+ ATH+VV SV G+D++F+ + ESF+  EKHLL NKKLHVV  QWLE CL + +
Sbjct: 842  KVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWLEGCLEEGR 901

Query: 903  KSEEYEYSLKPTGMQESYLELCEEDLDMEEPSSTLETSDKQNVSSFPDGDGKQRGTRGVS 962
            + +E +YSLKP G++ES    C+ D+D+E P S L++ + QN+ SFPD +GKQ   RG +
Sbjct: 902  RLQEQKYSLKPEGLEESNFGECKHDIDVEAP-SVLDSVENQNLVSFPDKEGKQ--GRGKA 958

Query: 963  P-------ASPKREGKRKRGRPAGGSAKKRKSTVNLARRKRPHVRNKPSKIYQNESDESN 1015
            P       ASPKR+ KRKRGRPAG S KK K+  + ARR RP +  KP KIY+NESD   
Sbjct: 959  PPESISILASPKRDEKRKRGRPAGPSTKKGKAGFSQARRTRPRI-GKPPKIYENESD--- 1014

Query: 1016 ASDETEKKEE--INREENHEDREMDDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGK 1073
            ASD  EK EE       NH    ++ +E  E ++T +VED ES  RGK  ++EV  D  +
Sbjct: 1015 ASDSGEKMEEEGTKMGGNHAIHGVECKECPEIQETEIVEDSESSQRGKTEEKEVALDNVR 1074

Query: 1074 EKQTVRAPDIEMRERYHSKDSETTDKQQ--VDAVQAMLLDMIPSLGMKNEKTTNPIPKEE 1131
            EK   RA DIE+       +S+ T+K +  VD VQAMLLDMIPSLG+K  ++TNPI  +E
Sbjct: 1075 EKWLDRAQDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDE 1134

Query: 1132 SSSAEPSAEPTKKKKVSYKDIASKLLKDW 1160
                E  AEP KKKKVSYKD+A  LLKDW
Sbjct: 1135 KPPVEQGAEPVKKKKVSYKDVAGALLKDW 1163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445943|ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224144326|ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356556242|ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max] Back     alignment and taxonomy information
>gi|112732548|dbj|BAF03051.1| DNA ligase IV [Populus nigra] Back     alignment and taxonomy information
>gi|357449599|ref|XP_003595076.1| DNA ligase [Medicago truncatula] gi|355484124|gb|AES65327.1| DNA ligase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297796605|ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] gi|297312022|gb|EFH42446.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30696835|ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana] gi|75174554|sp|Q9LL84.1|DNLI4_ARATH RecName: Full=DNA ligase 4; AltName: Full=DNA ligase IV; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 4 gi|9651815|gb|AAF91284.1|AF233527_1 DNA ligase IV [Arabidopsis thaliana] gi|332009474|gb|AED96857.1| DNA ligase 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449463583|ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|8843818|dbj|BAA97366.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1160
TAIR|locus:21755441219 ATLIG4 [Arabidopsis thaliana ( 0.787 0.748 0.732 0.0
DICTYBASE|DDB_G02927601088 lig4 "BRCT domain-containing p 0.468 0.499 0.289 5.5e-93
UNIPROTKB|Q23RI51026 TTHERM_00387050 "DNA ligase" [ 0.560 0.633 0.301 2.6e-85
ASPGD|ASPL00000571341009 AN0097 [Emericella nidulans (t 0.631 0.726 0.281 2.8e-82
UNIPROTKB|Q5BH831009 lig4 "DNA ligase 4" [Aspergill 0.631 0.726 0.281 2.8e-82
UNIPROTKB|Q90YB1912 LIG4 "DNA ligase 4" [Gallus ga 0.423 0.538 0.360 4.6e-78
UNIPROTKB|F1P275912 LIG4 "DNA ligase" [Gallus gall 0.423 0.538 0.360 5.9e-78
UNIPROTKB|Q5R6L3911 DNL4 "DNA ligase 4" [Pongo abe 0.444 0.566 0.359 5.5e-77
UNIPROTKB|P49917911 LIG4 "DNA ligase 4" [Homo sapi 0.444 0.566 0.357 1.5e-76
UNIPROTKB|F1RLP1910 LIG4 "DNA ligase" [Sus scrofa 0.444 0.567 0.354 3.7e-75
TAIR|locus:2175544 ATLIG4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3542 (1251.9 bits), Expect = 0., Sum P(2) = 0.
 Identities = 673/919 (73%), Positives = 781/919 (84%)

Query:     4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
             TEE +  VLVSLFNWIQK+K +++KRSKFRKFLDTYC   DYF A+RLI+PSLDRERGSY
Sbjct:     2 TEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGSY 61

Query:    64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAP---NAGNFPMVAAEVLQRRQGMI 120
             GLKESVLA CLIDALG+S+D+ DAVRL+NWRKGG A    NAGNF ++AAEVLQRRQGM 
Sbjct:    62 GLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMA 121

Query:   121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
             SGGLTIKELNDLLDRLASSENRAEK  VLSTLI+KTNAQEMKW+I IILKDLKLG+SEKS
Sbjct:   122 SGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKS 181

Query:   181 IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
             IF EFHPDAEDLFNVTCDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLAMRIGD +AAW+
Sbjct:   182 IFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWK 241

Query:   241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
             KLHGK+VV ECKFDGDRIQIHKNG++IHYFSR+FLDHSEY HAMS +I QN+LVD+CILD
Sbjct:   242 KLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILD 301

Query:   301 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKER 360
             GEMLVWDTSLNRFAEFGSNQEIAKAAR+GL S +Q LCY AFDVLYVGDTSVIHQSLKER
Sbjct:   302 GEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQ-LCYVAFDVLYVGDTSVIHQSLKER 360

Query:   361 HELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEG 420
             HELL+KVVKP KGRLE LVP+ GLN H RP GEP WS+V H   +VE+FFKET+ENRDEG
Sbjct:   361 HELLKKVVKPLKGRLEVLVPEGGLNVH-RPSGEPSWSIVVHAAADVERFFKETVENRDEG 419

Query:   421 IVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXXXXXXXXXXXEVAQFLVALAE 480
             IVLKDL SKWEPGDRSGKW+KLKPEYIRAG+DLDVLII           EVAQFLVALA+
Sbjct:   420 IVLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALAD 479

Query:   481 RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKER 540
             R   + YPRRF+SFCRVGTGLSD+EL+ VV+KLKPYFRK E+PK+APPSFYQVTN+SKER
Sbjct:   480 RAEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKER 539

Query:   541 PDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 600
             PDVWI+SPEKSIILSITSDIRTIRSEVF APYSLRFPRID+VRYDKPWH+CLDVQ+FVEL
Sbjct:   540 PDVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVEL 599

Query:   601 VHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSD 660
             V+SSNGTTQK KE    QD+ PK  +SS++GEKKNVS+VPS F+QTDVSDIKG+TSIFS+
Sbjct:   600 VNSSNGTTQKQKESESTQDN-PKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSN 658

Query:   661 MVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIH 720
             M+FYFVNVP ++SL++ HKMVVENGG FSMNLNNSVTHC+AA++ G+KY+AAKR+ DVIH
Sbjct:   659 MIFYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIH 718

Query:   721 YSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVD 780
             +SWVLDCCS          Y+LHL+D+S+ KLQ+++DEFSD Y+WDLDL  +KQ+LSN  
Sbjct:   719 FSWVLDCCSRNKMLPLLPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAK 778

Query:   781 RSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVXXXXXXXXXXXEISFH 840
             +SED K+IDYYKKK CP+ +WSC   CC+YFY  ++ LS + E            E+   
Sbjct:   779 QSEDSKSIDYYKKKLCPEKRWSCLLSCCVYFYPYSQTLSTEEEALLGIMAKRLMLEVLMA 838

Query:   841 GGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAK 900
             GGKV NNLA+A+H+VVL++    ++F  +++SF+  EK LL  K+LHVV S WLE+ L +
Sbjct:   839 GGKVSNNLAHASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLLKKRLHVVSSHWLEESLQR 898

Query:   901 EQKSEEYEYSLKPTGMQES 919
             E+K  E  Y+L+P  M+ES
Sbjct:   899 EEKLCEDVYTLRPKYMEES 917
GO:0003677 "DNA binding" evidence=IEA
GO:0003909 "DNA ligase activity" evidence=IEA
GO:0003910 "DNA ligase (ATP) activity" evidence=IEA;IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006260 "DNA replication" evidence=IEA
GO:0006266 "DNA ligation" evidence=IBA
GO:0006281 "DNA repair" evidence=IEA
GO:0006310 "DNA recombination" evidence=IEA
GO:0032807 "DNA ligase IV complex" evidence=IBA
GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0006974 "response to DNA damage stimulus" evidence=IMP
GO:0010165 "response to X-ray" evidence=IMP
GO:0015074 "DNA integration" evidence=IMP
GO:0000723 "telomere maintenance" evidence=IMP
GO:0006302 "double-strand break repair" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
DICTYBASE|DDB_G0292760 lig4 "BRCT domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q23RI5 TTHERM_00387050 "DNA ligase" [Tetrahymena thermophila SB210 (taxid:312017)] Back     alignment and assigned GO terms
ASPGD|ASPL0000057134 AN0097 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5BH83 lig4 "DNA ligase 4" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms
UNIPROTKB|Q90YB1 LIG4 "DNA ligase 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P275 LIG4 "DNA ligase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R6L3 DNL4 "DNA ligase 4" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|P49917 LIG4 "DNA ligase 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RLP1 LIG4 "DNA ligase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LL84DNLI4_ARATH6, ., 5, ., 1, ., 10.61420.96810.9212yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.5.1.10.991
3rd Layer6.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1160
TIGR00574514 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1 1e-98
cd07903225 cd07903, Adenylation_DNA_ligase_IV, Adenylation do 2e-77
PRK01109590 PRK01109, PRK01109, ATP-dependent DNA ligase; Prov 4e-59
cd07968140 cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/ol 1e-54
COG1793444 COG1793, CDC9, ATP-dependent DNA ligase [DNA repli 2e-51
pfam01068195 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligas 1e-38
cd07901207 cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenyla 4e-38
cd07900219 cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation 5e-35
cd07898201 cd07898, Adenylation_DNA_ligase, Adenylation domai 9e-35
pfam04675177 pfam04675, DNA_ligase_A_N, DNA ligase N terminus 1e-32
PRK03180508 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed 1e-31
PLN03113744 PLN03113, PLN03113, DNA ligase 1; Provisional 1e-30
cd07906190 cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenyla 2e-27
cd07893129 cd07893, OBF_DNA_ligase, The Oligonucleotide/oligo 2e-25
cd07902213 cd07902, Adenylation_DNA_ligase_III, Adenylation d 4e-25
TIGR02779298 TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, l 1e-22
PRK09632764 PRK09632, PRK09632, ATP-dependent DNA ligase; Revi 2e-19
cd07969144 cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oli 6e-19
cd08039235 cd08039, Adenylation_DNA_ligase_Fungal, Adenylatio 4e-18
TIGR02776552 TIGR02776, NHEJ_ligase_prk, DNA ligase D 2e-14
PRK05972860 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed 4e-14
pfam0467995 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligas 1e-13
cd07972122 cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleo 2e-13
cd07967139 cd07967, OBF_DNA_ligase_III, The Oligonucleotide/o 2e-13
cd07905194 cd07905, Adenylation_DNA_ligase_LigC, Adenylation 5e-12
cd06846182 cd06846, Adenylation_DNA_ligase_like, Adenylation 6e-11
pfam0053377 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain 6e-11
smart0029278 smart00292, BRCT, breast cancer carboxy-terminal d 1e-10
PRK07636275 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed 2e-10
PRK09633610 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed 1e-09
pfam1273863 pfam12738, PTCB-BRCT, twin BRCT domain 2e-09
PHA02587488 PHA02587, 30, DNA ligase; Provisional 3e-09
TIGR04120526 TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent 5e-09
cd0002772 cd00027, BRCT, Breast Cancer Suppressor Protein (B 7e-09
cd07897207 cd07897, Adenylation_DNA_ligase_Bac1, Adenylation 8e-09
PRK09247539 PRK09247, PRK09247, ATP-dependent DNA ligase; Vali 2e-08
PRK09125282 PRK09125, PRK09125, DNA ligase; Provisional 9e-08
cd07896174 cd07896, Adenylation_kDNA_ligase_like, Adenylation 2e-06
cd08040108 cd08040, OBF_DNA_ligase_family, The Oligonucleotid 3e-06
cd07971115 cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/ 3e-04
pfam0053377 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain 8e-04
pfam04675177 pfam04675, DNA_ligase_A_N, DNA ligase N terminus 0.004
>gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1) Back     alignment and domain information 
 Score =  322 bits (828), Expect = 1e-98
 Identities = 178/561 (31%), Positives = 274/561 (48%), Gaps = 71/561 (12%)

Query: 63  YGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMIS- 121
           YG+ E +L   +   LG+ KD  +   L +   G              E L  +Q   S 
Sbjct: 2   YGIGEKLLIKAISSILGIPKDEIEEKVLEDGDLG-----------EVIEGLFSKQKQTSF 50

Query: 122 --GGLTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGI 176
               LT+KE+ ++L  +A      ++ +KI +L +L+K+    E K++I +IL DL++GI
Sbjct: 51  FPAPLTVKEVYEVLKFIARLSGEGSQDKKIKLLKSLLKRATPLEAKYLIRLILGDLRIGI 110

Query: 177 SEKSIFHEFH-------PDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQ 227
           +EK+I            PD E  FN+T DL  V + L +   R   +D  I++G   +P 
Sbjct: 111 AEKTILDALAKAFLLSPPDVERAFNLTNDLGKVAKILLEEGLRGLDKDLSIQLGIPFKPM 170

Query: 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSK 286
           LA R      A +K       +E K+DG+R+Q+HK+G +   FSR   +++  Y    ++
Sbjct: 171 LAERAKSIEEALKKKGNG-FYVEYKYDGERVQVHKDGDKFKIFSRRLENYTYAYPEIFTE 229

Query: 287 -IIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAAR--DGLSSDRQV-LCYFAF 342
            I E    +  CILDGEM+  D    +   F   Q + +  R  D  + +++V +C F F
Sbjct: 230 FIKEAFPGIKSCILDGEMVAIDPETGKPLPF---QTLLRRKRKYDIKAMEQKVPVCLFVF 286

Query: 343 DVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHN 402
           D+LY+   S+I + L ER E+L+ ++KP   R+E +                    +  N
Sbjct: 287 DILYLNGESLIDEPLIERREILESILKPIPNRIE-IAE----------------MKIVSN 329

Query: 403 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGY 461
           V+E+EKF  E I    EG++LKDL S +EPG R   WLK+KPEY+   G  LD+++IG Y
Sbjct: 330 VEELEKFLNEAISEGCEGLMLKDLKSIYEPGKRGWLWLKVKPEYLEGMGDTLDLVVIGAY 389

Query: 462 YGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYE 521
           YG G RGG    FL+A       D     F +  +VGTG +D +L  +  KL P     +
Sbjct: 390 YGKGSRGGMYGSFLLACY-----DPESEEFKTITKVGTGFTDADLQELGKKLPPL--WID 442

Query: 522 YPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSIT-SDIRTIRSEVFSAPYSLRFPRID 580
            P    PS         + PD+W   P+ +I+  +T ++I T      +   SLRFPR  
Sbjct: 443 PPGSRVPSI------LPDEPDIW---PDPAIVWEVTGAEI-TKSPAYKANGISLRFPRFS 492

Query: 581 RVRYDKPWHDCLDVQSFVELV 601
           R+R DK   D   ++   EL 
Sbjct: 493 RIRDDKGPEDATTIEQIKELY 513

All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 514
>gnl|CDD|185713 cd07903, Adenylation_DNA_ligase_IV, Adenylation domain of DNA Ligase IV Back     alignment and domain information
>gnl|CDD|234900 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|153437 cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|224706 COG1793, CDC9, ATP-dependent DNA ligase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|216280 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain Back     alignment and domain information
>gnl|CDD|185711 cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenylation domain of archaeal and bacterial LigB-like DNA ligases Back     alignment and domain information
>gnl|CDD|185710 cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation domain of eukaryotic DNA Ligase I Back     alignment and domain information
>gnl|CDD|185709 cd07898, Adenylation_DNA_ligase, Adenylation domain of ATP-dependent DNA Ligases Back     alignment and domain information
>gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus Back     alignment and domain information
>gnl|CDD|235108 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional Back     alignment and domain information
>gnl|CDD|185715 cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>gnl|CDD|153435 cd07893, OBF_DNA_ligase, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases Back     alignment and domain information
>gnl|CDD|185712 cd07902, Adenylation_DNA_ligase_III, Adenylation domain of DNA Ligase III Back     alignment and domain information
>gnl|CDD|234009 TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, ligase domain Back     alignment and domain information
>gnl|CDD|236599 PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|153438 cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|185716 cd08039, Adenylation_DNA_ligase_Fungal, Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins Back     alignment and domain information
>gnl|CDD|234007 TIGR02776, NHEJ_ligase_prk, DNA ligase D Back     alignment and domain information
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|218210 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal region Back     alignment and domain information
>gnl|CDD|153441 cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|153436 cd07967, OBF_DNA_ligase_III, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|185714 cd07905, Adenylation_DNA_ligase_LigC, Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>gnl|CDD|185704 cd06846, Adenylation_DNA_ligase_like, Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases Back     alignment and domain information
>gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain Back     alignment and domain information
>gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain Back     alignment and domain information
>gnl|CDD|236070 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|182006 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|193214 pfam12738, PTCB-BRCT, twin BRCT domain Back     alignment and domain information
>gnl|CDD|222893 PHA02587, 30, DNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|234477 TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent, PP_1105 family Back     alignment and domain information
>gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>gnl|CDD|185708 cd07897, Adenylation_DNA_ligase_Bac1, Adenylation domain of putative bacterial ATP-dependent DNA ligases Back     alignment and domain information
>gnl|CDD|236428 PRK09247, PRK09247, ATP-dependent DNA ligase; Validated Back     alignment and domain information
>gnl|CDD|181662 PRK09125, PRK09125, DNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|185707 cd07896, Adenylation_kDNA_ligase_like, Adenylation domain of kDNA ligases and similar proteins Back     alignment and domain information
>gnl|CDD|153442 cd08040, OBF_DNA_ligase_family, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases Back     alignment and domain information
>gnl|CDD|153440 cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain Back     alignment and domain information
>gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1160
KOG0966881 consensus ATP-dependent DNA ligase IV [Replication 100.0
PLN03113744 DNA ligase 1; Provisional 100.0
PRK01109590 ATP-dependent DNA ligase; Provisional 100.0
KOG0967714 consensus ATP-dependent DNA ligase I [Replication, 100.0
TIGR00574514 dnl1 DNA ligase I, ATP-dependent (dnl1). All prote 100.0
PRK09247539 ATP-dependent DNA ligase; Validated 100.0
PRK03180508 ligB ATP-dependent DNA ligase; Reviewed 100.0
PHA02587488 30 DNA ligase; Provisional 100.0
COG1793444 CDC9 ATP-dependent DNA ligase [DNA replication, re 100.0
TIGR02779298 NHEJ_ligase_lig DNA polymerase LigD, ligase domain 100.0
PRK09632764 ATP-dependent DNA ligase; Reviewed 100.0
PRK08224350 ligC ATP-dependent DNA ligase; Reviewed 100.0
PRK05972860 ligD ATP-dependent DNA ligase; Reviewed 100.0
PRK09633610 ligD ATP-dependent DNA ligase; Reviewed 100.0
PRK07636275 ligB ATP-dependent DNA ligase; Reviewed 100.0
cd07900219 Adenylation_DNA_ligase_I_Euk Adenylation domain of 100.0
TIGR02776552 NHEJ_ligase_prk DNA ligase D. Members of this prot 100.0
cd07903225 Adenylation_DNA_ligase_IV Adenylation domain of DN 100.0
cd07902213 Adenylation_DNA_ligase_III Adenylation domain of D 100.0
cd07901207 Adenylation_DNA_ligase_Arch_LigB Adenylation domai 100.0
PRK09125282 DNA ligase; Provisional 100.0
PHA00454315 ATP-dependent DNA ligase 100.0
cd07897207 Adenylation_DNA_ligase_Bac1 Adenylation domain of 100.0
cd08039235 Adenylation_DNA_ligase_Fungal Adenylation domain o 100.0
cd07898201 Adenylation_DNA_ligase Adenylation domain of ATP-d 100.0
PF01068202 DNA_ligase_A_M: ATP dependent DNA ligase domain; I 100.0
cd07905194 Adenylation_DNA_ligase_LigC Adenylation domain of 100.0
cd07906190 Adenylation_DNA_ligase_LigD_LigC Adenylation domai 100.0
cd07967139 OBF_DNA_ligase_III The Oligonucleotide/oligosaccha 99.97
cd07896174 Adenylation_kDNA_ligase_like Adenylation domain of 99.97
cd06846182 Adenylation_DNA_ligase_like Adenylation domain of 99.96
PF04675177 DNA_ligase_A_N: DNA ligase N terminus; InterPro: I 99.96
cd07968140 OBF_DNA_ligase_IV The Oligonucleotide/oligosacchar 99.95
cd07969144 OBF_DNA_ligase_I The Oligonucleotide/oligosacchari 99.94
cd07972122 OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligo 99.92
KOG4437482 consensus ATP-dependent DNA ligase III [Replicatio 99.92
cd07895215 Adenylation_mRNA_capping Adenylation domain of GTP 99.92
cd07893129 OBF_DNA_ligase The Oligonucleotide/oligosaccharide 99.91
cd07971115 OBF_DNA_ligase_LigD The Oligonucleotide/oligosacch 99.78
PF0467997 DNA_ligase_A_C: ATP dependent DNA ligase C termina 99.73
cd08040108 OBF_DNA_ligase_family The Oligonucleotide/oligosac 99.73
cd07894342 Adenylation_RNA_ligase Adenylation domain of RNA c 99.63
cd07970122 OBF_DNA_ligase_LigC The Oligonucleotide/oligosacch 99.61
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 99.14
PF01331192 mRNA_cap_enzyme: mRNA capping enzyme, catalytic do 99.04
smart0029280 BRCT breast cancer carboxy-terminal domain. 98.96
KOG1929 811 consensus Nucleotide excision repair factor NEF2, 98.95
KOG3524 850 consensus Predicted guanine nucleotide exchange fa 98.91
COG5226404 CEG1 mRNA capping enzyme, guanylyltransferase (alp 98.9
cd0804177 OBF_kDNA_ligase_like The Oligonucleotide/oligosacc 98.9
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 98.79
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 98.71
COG1423382 ATP-dependent DNA ligase, homolog of eukaryotic li 98.64
KOG3226508 consensus DNA repair protein [Replication, recombi 98.63
TIGR01209374 RNA ligase, Pab1020 family. Members of this family 98.57
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 98.52
smart0029280 BRCT breast cancer carboxy-terminal domain. 98.52
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 98.31
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 98.27
KOG1929 811 consensus Nucleotide excision repair factor NEF2, 98.14
KOG35481176 consensus DNA damage checkpoint protein RHP9/CRB2/ 98.12
cd09232186 Snurportin-1_C C-terminal m3G cap-binding domain o 98.03
PF1141136 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 98.02
PF1474366 DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2 97.83
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 97.76
KOG2481570 consensus Protein required for normal rRNA process 97.74
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 97.6
KOG2481570 consensus Protein required for normal rRNA process 97.56
smart00532441 LIGANc Ligase N family. 97.56
COG5163591 NOP7 Protein required for biogenesis of the 60S ri 97.42
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 97.4
cd00114307 LIGANc NAD+ dependent DNA ligase adenylation domai 97.24
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 97.21
PRK08097562 ligB NAD-dependent DNA ligase LigB; Reviewed 97.2
KOG3226508 consensus DNA repair protein [Replication, recombi 97.12
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 97.08
PF01653315 DNA_ligase_aden: NAD-dependent DNA ligase adenylat 97.03
COG5163591 NOP7 Protein required for biogenesis of the 60S ri 96.81
PLN03123981 poly [ADP-ribose] polymerase; Provisional 96.78
KOG4362684 consensus Transcriptional regulator BRCA1 [Replica 96.64
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 96.6
PRK01109590 ATP-dependent DNA ligase; Provisional 96.56
TIGR02307325 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of t 96.52
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 96.34
PLN03123 981 poly [ADP-ribose] polymerase; Provisional 95.74
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 95.73
PF09414186 RNA_ligase: RNA ligase; InterPro: IPR021122 This e 95.73
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 95.43
COG5275276 BRCT domain type II [General function prediction o 95.07
PRK06063313 DNA polymerase III subunit epsilon; Provisional 95.07
PRK06195309 DNA polymerase III subunit epsilon; Validated 95.06
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 94.77
KOG2093 1016 consensus Translesion DNA polymerase - REV1 deoxyc 94.65
PHA02142366 putative RNA ligase 93.86
KOG2043896 consensus Signaling protein SWIFT and related BRCT 93.72
KOG2043896 consensus Signaling protein SWIFT and related BRCT 91.37
KOG3132325 consensus m3G-cap-specific nuclear import receptor 90.77
TIGR02306341 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me 90.75
PRK09247539 ATP-dependent DNA ligase; Validated 87.43
KOG35481176 consensus DNA damage checkpoint protein RHP9/CRB2/ 84.06
PRK03180508 ligB ATP-dependent DNA ligase; Reviewed 83.4
KOG0966881 consensus ATP-dependent DNA ligase IV [Replication 83.05
PF04675177 DNA_ligase_A_N: DNA ligase N terminus; InterPro: I 81.88
KOG4362684 consensus Transcriptional regulator BRCA1 [Replica 81.68
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-149  Score=1300.54  Aligned_cols=851  Identities=41%  Similarity=0.690  Sum_probs=702.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCC----chHhhhHhhcCCCCCcCcccCCCCHHHHHHHHHHHh
Q 001082            3 KTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDAL   78 (1160)
Q Consensus         3 ~~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~----~~~~p~lrLllp~~d~er~~ygike~~L~k~~~~~l   78 (1160)
                      ||+++.|+.+|++|+.|+.+.....|++++++++.+|+.+    +|+||++||++|++||+|+.||||+..|+++|+++|
T Consensus         1 ~~~~~~F~~~~~~f~~i~~t~~~~~k~~~~~k~~~s~~~~~e~~sd~y~~lRL~lp~lDReR~~Yglket~La~l~i~~l   80 (881)
T KOG0966|consen    1 MASPQNFSEVVDFFNKIRRTSNVKSKQAKFRKNFESWCRPCEVGSDMYVALRLILPDLDRERGSYGLKETVLARLYIRAL   80 (881)
T ss_pred             CCCccccchHHHHHHHHHHhhhhHhHHHHHhhccccccccccCCcchhhhhhhcccchhhcccccCchHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999999875    999999999999999999999999999999999999


Q ss_pred             CCCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhcCCC-CCCCcHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHhC
Q 001082           79 GMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMI-SGGLTIKELNDLLDRLASSENRAEKI-SVLSTLIKKT  156 (1160)
Q Consensus        79 gl~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~~~~-~~~LTI~eVn~~Ld~LA~~~~~~~k~-~iL~~ll~~~  156 (1160)
                      ++|++|.||++|.||+.++.+.  |||++++++++++|+... ++.|||.|||++||.||+......+. ..|..++++|
T Consensus        81 ~lprds~Da~rL~nwr~~~~~~--Gdfs~i~~~vl~~R~~~~~s~alTi~evN~lLD~LA~~~~~~~~~~~~l~~lv~~~  158 (881)
T KOG0966|consen   81 HLPRDSADAVRLKNWRASTGAR--GDFSLILYEVLQRRCENPSSGALTIKEVNDLLDSLASGPSEDGKKFKKLSQLVEQC  158 (881)
T ss_pred             cCCCCcHHHHHHHhhccCCCcC--ccHHHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHcCCchhhhhhhHHHHHHHHhC
Confidence            9999999999999999987755  999999999999999654 44599999999999999887655443 7899999999


Q ss_pred             CHHHHHHHHHHHhhhhccCCcccccccccCccHHHHHhhhCCHHHHHHHHhhhhccccccc--cccCCccccccccccCC
Q 001082          157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLAMRIGD  234 (1160)
Q Consensus       157 s~~E~k~l~RiIlkdLriGi~e~til~~~hpda~~~~~~~~DL~~V~~~L~~~~~~~~~~~--i~~g~p~~PmLA~~~~~  234 (1160)
                      ||.|+|||+|||||++++|++|++||.+|||||.++|++|+||+.||+.|.+|..+++..+  |++|..|+||||++...
T Consensus       159 S~~ElkWliriiLK~lklG~se~~Il~vfHPdA~dl~~vtsDLk~Vc~~L~Dp~~~l~~~~~~i~lfsa~~PqLa~~~~~  238 (881)
T KOG0966|consen  159 SPLELKWLIRIILKNLKLGASEKKILSVFHPDAQDLYNVTSDLKAVCKKLYDPSVGLKELDEDIELFSAFRPQLAQKQKL  238 (881)
T ss_pred             CHHHHHHHHHHHHHhhhcCCccchhhhhcCccHHHHHHHhhhHHHHHHHhcCCccCccccccceeehhhcCHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999998887  99999999999999877


Q ss_pred             hH-HHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcch-----hh-HHHHHHHhc--ccCceeeeeeEEE
Q 001082          235 AH-AAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYG-----HA-MSKIIEQNV--LVDRCILDGEMLV  305 (1160)
Q Consensus       235 ~~-~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~~~-----p~-l~~~l~~~~--~~~~~ILDGElv~  305 (1160)
                      .. +++++|++++||+|+|+||||+|+|++|+.++||||||.|||..+     .+ +...+...+  ....||||||||+
T Consensus       239 ~~~~~~e~m~~~~f~lEtK~DGERiQlHk~g~~~~yfSRNg~dyT~~yg~s~~~g~lt~~i~~~f~~~v~~cILDGEMm~  318 (881)
T KOG0966|consen  239 GDWAIIEKMGGQDFYLETKFDGERIQLHKDGGEYKYFSRNGNDYTYEYGASYAHGTLTQRIHGAFNKEVESCILDGEMMT  318 (881)
T ss_pred             chHHHHHHhcCCceEEEeeccCceEEEEecCCEEEEEecCCcchhhhcCcccccccccHHHHhhhhhcchheEecceEEE
Confidence            66 689999999999999999999999999999999999999999422     22 223332222  2789999999999


Q ss_pred             EeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCC
Q 001082          306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLN  385 (1160)
Q Consensus       306 ~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~  385 (1160)
                      ||+.+.+++|||+++++......  +.+.+ +||+|||+||+||++|.+.||.+|+++|..++.+.+++++|+       
T Consensus       319 wD~~~~~f~~~G~~~dik~~~~~--~~~~q-p~yvvfDLLylNgksL~~~~l~qR~e~L~~v~~p~~~~iei~-------  388 (881)
T KOG0966|consen  319 WDTKTKRFCPFGSNSDIKELSSR--DGSQQ-PCYVVFDLLYLNGKSLFGAPLHQRLEILKKVIVPKSGRIEIV-------  388 (881)
T ss_pred             eecchhhhccCCchhhHHHhhcc--ccCCC-ceEEEeeeeeecCcccCCccHHHHHHHHHhcccCCCCeeEEe-------
Confidence            99999999999999988765531  23344 999999999999999999999999999999999999998765       


Q ss_pred             ccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEcccccc-CCCcccEEEEEEEecC
Q 001082          386 SHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIR-AGSDLDVLIIGGYYGS  464 (1160)
Q Consensus       386 ~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~-~g~~lDlvVIG~~~G~  464 (1160)
                                +...+++.++|+++|+.||++|.||||+|.++|.|.||.|+++|+|+||+|+. +|+++|++|||||||+
T Consensus       389 ----------~~~~~~~~edi~~~f~~ai~~~~EGIVlK~~~S~Y~pg~R~~gW~K~KPeYlkg~g~dLD~lIiGgy~G~  458 (881)
T KOG0966|consen  389 ----------RSEVGSTKEDIEQFFEEAIDNGEEGIVLKKPDSSYVPGQRSNGWIKLKPEYLKGFGEDLDLLIIGGYYGR  458 (881)
T ss_pred             ----------ehhhcccHHHHHHHHHHHHhcCCCceEEeccCcccCccccCCCcEeecHHHHhhcCccccEEEEecccCC
Confidence                      24567899999999999999999999999999999999999999999999999 5899999999999999


Q ss_pred             CCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCC-cccccCCCCCCCcE
Q 001082          465 GRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPS-FYQVTNNSKERPDV  543 (1160)
Q Consensus       465 Grr~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~-~~~~~~~~~~~Pdv  543 (1160)
                      |+|+|++.+|+||+.+...++.+|.+|.++|+||+|+|++|+..+.++|++||.. ..+.. ||. ++..+   ...||+
T Consensus       459 g~rgg~~~~fl~a~~ek~~p~~~p~~f~sfcrvg~g~s~~e~~~v~~klr~~w~~-~~~~a-pP~s~l~~t---k~~Pd~  533 (881)
T KOG0966|consen  459 GDRGGKVLSFLCALAEKAPPNSRPEKFCSFCRVGNGISQKERDTVREKLRGHWKP-TSLEA-PPESFLFGT---KKIPDV  533 (881)
T ss_pred             CCCCCeeeeeeehhcccCCCCCccceeeEeeEecCCccHHHHHHHHHhhhhhccc-ccccC-CCHHHHhcc---cCCCce
Confidence            9999999999999998877777899999999999999999999999999999987 23444 554 44432   347999


Q ss_pred             EEeCCcceEEEEEEeeeeeeecccccCCceeecceeeeeecCCCccCcCCHHHHHHHHHccCCCcccccccCCCCCCCCc
Q 001082          544 WIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPK  623 (1160)
Q Consensus       544 wi~~P~~s~Vlev~~~i~~~~s~~~~~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~~~~~~~~~~~~~~~~~~~~~~  623 (1160)
                      ||+ |..|+|++|++ ++++.+..|.++|||||||+.+||+||+|+||+|+++|.++...+.       ++.+.+. +++
T Consensus       534 wI~-P~~SiIlqika-a~i~~s~~f~tn~tLrfPr~ekvR~DK~W~ec~tl~~l~~l~~~~~-------~d~~~~~-kk~  603 (881)
T KOG0966|consen  534 WID-PDNSIILQIKA-AEIVPSSNFVTNYTLRFPRIEKVRLDKPWHECLTLNELGDLVNVSK-------SDVEDKE-KKK  603 (881)
T ss_pred             eEC-CCCceEEEeeh-heeeecccccccceeecceeeeeecCCcHHHHhhHHHHHHHhcccc-------CCcchhh-hhc
Confidence            999 99999999995 3456899999999999999999999999999999999999985311       1111111 111


Q ss_pred             ccccccccccccccccCCccccCccccccCCCCcccCeEEEEEcCC-CCCChHHHHHHHHHcCCEEEecCCCCceEEEE-
Q 001082          624 QFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVP-PAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA-  701 (1160)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~s~lF~G~~F~vv~~~-~~~~k~eLeklI~~~GG~iv~n~~~s~Th~Ia-  701 (1160)
                      + .+.+++++.+.   .-+...+..+.+.+.+++|.|+.|||+++. ...++.+|+++|++|||++++|++++.|+||+ 
T Consensus       604 ~-~t~~~~k~~~~---~i~~~~~~~~~~~~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~  679 (881)
T KOG0966|consen  604 R-DTLKVRKRTRK---AIHDSAPNRSKVAKISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIAT  679 (881)
T ss_pred             c-cchhhhhhhhh---hhcccccchhcccchhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEe
Confidence            1 11111111111   123334556677788999999999999876 45668999999999999999999998999996 


Q ss_pred             ecC--CChhhHhhhcCCCeeecchHHHHHhcCccCCCCcccccccChhhhhhhhhcccccCCCcccCCChhHHHHHhhcc
Q 001082          702 ADN--KGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNV  779 (1160)
Q Consensus       702 ~~~--~~~K~~~a~~~~~VV~p~WV~dCi~~~~lLp~~p~~~l~~s~~t~~~~~~~~D~~GDSy~~~~~~~~L~~ll~~~  779 (1160)
                      ++.  .+.++.++.+..+||+|+||+||+...+++||.|++++++++.+++.++..+|+|||||++|++.+.|+.+++.+
T Consensus       680 a~~et~~vk~~~~~~~cdVl~p~Wlldcc~~~~l~p~~P~~~fh~~e~~~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~  759 (881)
T KOG0966|consen  680 AGKETTRVKAQAIKRSCDVLKPAWLLDCCKKQRLLPWLPRDLFHATEKGREKLAKEVDCLGDSYENDIDLEQLKKVLSGI  759 (881)
T ss_pred             ccccchHHHHHHHhccCceeeHHHHHHHHhhhhccccccHHHHhhCchHHHHHHHHHhhhcchhhhhccHHHHHHHHhhh
Confidence            333  334556666655999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCcchhhHHhhhcCCCCCCccCCCeEEEEccCCCCCCChhHHHHHHHHHHHHHHHHhcCCEEEccCC-------Cce
Q 001082          780 DRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-------NAT  852 (1160)
Q Consensus       780 ~~s~~~~~i~~l~~~~~~~~~~~lF~gc~~yl~~~~~~~~~d~~~i~~~~~~~l~~~I~~~GG~v~~~ls-------~vT  852 (1160)
                      ..+.++..+.......++...+.+|.-|..+|+......+.+        .......+..+||.+++.-.       .+|
T Consensus       760 k~S~ds~~~~~~~~~~~~e~r~~~~~~~~~~f~~~~~~~~se--------~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t  831 (881)
T KOG0966|consen  760 KKSQDSLPPMGASEKDSLERRFSLFLSSLRMFYVLRRKLSSE--------EVIIELKLKNFGGRITDAQSECNNIGAKYT  831 (881)
T ss_pred             hhcccccCchhhhhhhcHHHhhccccccceeeecccccccHH--------HHHHHHHHHHhcceeeeccchhhhccccee
Confidence            876554322221111112222222322333333332222222        23445567888998887653       269


Q ss_pred             EEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEeccchHHHHHHcCCccCCCCCC
Q 001082          853 HVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS  910 (1160)
Q Consensus       853 HVVV~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~VVs~~Wl~~ci~~~~~v~E~~Y~  910 (1160)
                      |+|+...+ .+  ..  ..+.  +.......++ +||.+.||.+|+.++.++||+.|+
T Consensus       832 ~~v~~~i~-~~--h~--~~~~--~~~~~lt~~r-kv~~~~wv~~s~~~~~~~~e~~~~  881 (881)
T KOG0966|consen  832 HCVLRCID-ED--HE--KIKE--QKKASLTIKR-KVVAPSWVDHSINENCLLPEEDFP  881 (881)
T ss_pred             eeeeeecc-hH--HH--HHHH--HHHHHhcccc-cccCHHHHHHhhcccccCccccCC
Confidence            99987322 11  11  1111  1111122244 999999999999999999999995

>PLN03113 DNA ligase 1; Provisional Back     alignment and domain information
>PRK01109 ATP-dependent DNA ligase; Provisional Back     alignment and domain information
>KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair] Back     alignment and domain information
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) Back     alignment and domain information
>PRK09247 ATP-dependent DNA ligase; Validated Back     alignment and domain information
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PHA02587 30 DNA ligase; Provisional Back     alignment and domain information
>COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain Back     alignment and domain information
>PRK09632 ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK08224 ligC ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>PRK07636 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I Back     alignment and domain information
>TIGR02776 NHEJ_ligase_prk DNA ligase D Back     alignment and domain information
>cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV Back     alignment and domain information
>cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III Back     alignment and domain information
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases Back     alignment and domain information
>PRK09125 DNA ligase; Provisional Back     alignment and domain information
>PHA00454 ATP-dependent DNA ligase Back     alignment and domain information
>cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases Back     alignment and domain information
>cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins Back     alignment and domain information
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases Back     alignment and domain information
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases Back     alignment and domain information
>cd07967 OBF_DNA_ligase_III The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins Back     alignment and domain information
>cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases Back     alignment and domain information
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>cd07968 OBF_DNA_ligase_IV The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>cd07969 OBF_DNA_ligase_I The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>cd07972 OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>KOG4437 consensus ATP-dependent DNA ligase III [Replication, recombination and repair] Back     alignment and domain information
>cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes Back     alignment and domain information
>cd07893 OBF_DNA_ligase The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases Back     alignment and domain information
>cd07971 OBF_DNA_ligase_LigD The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>PF04679 DNA_ligase_A_C: ATP dependent DNA ligase C terminal region ; InterPro: IPR012309 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>cd08040 OBF_DNA_ligase_family The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases Back     alignment and domain information
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins Back     alignment and domain information
>cd07970 OBF_DNA_ligase_LigC The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] Back     alignment and domain information
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] Back     alignment and domain information
>cd08041 OBF_kDNA_ligase_like The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>TIGR01209 RNA ligase, Pab1020 family Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] Back     alignment and domain information
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1 Back     alignment and domain information
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining Back     alignment and domain information
>PF14743 DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2Q2U_D 2Q2T_A 1FVI_A 1P8L_A Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] Back     alignment and domain information
>smart00532 LIGANc Ligase N family Back     alignment and domain information
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK01109 ATP-dependent DNA ligase; Provisional Back     alignment and domain information
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>COG5275 BRCT domain type II [General function prediction only] Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair] Back     alignment and domain information
>PHA02142 putative RNA ligase Back     alignment and domain information
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification] Back     alignment and domain information
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family Back     alignment and domain information
>PRK09247 ATP-dependent DNA ligase; Validated Back     alignment and domain information
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] Back     alignment and domain information
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1160
4hto_A240 Crystal Structure Of The Dbd Domain Of Human Dna Li 2e-38
2hiv_A621 Atp-Dependent Dna Ligase From S. Solfataricus Lengt 1e-32
3l2p_A579 Human Dna Ligase Iii Recognizes Dna Ends By Dynamic 8e-30
3rr5_A570 Dna Ligase From The Archaeon Thermococcus Sp. 1519 4e-29
2cfm_A561 Atp-Dependent Dna Ligase From Pyrococcus Furiosus L 5e-29
4eq5_A571 Dna Ligase From The Archaeon Thermococcus Sibiricus 2e-28
1x9n_A688 Crystal Structure Of Human Dna Ligase I Bound To 5' 4e-24
3gde_A558 The Closed Conformation Of Atp-Dependent Dna Ligase 1e-19
3vnn_A139 Crystal Structure Of A Sub-Domain Of The Nucleotidy 2e-15
3ii6_X263 Structure Of Human Xrcc4 In Complex With The Tandem 1e-09
1vs0_A310 Crystal Structure Of The Ligase Domain From M. Tube 5e-05
>pdb|4HTO|A Chain A, Crystal Structure Of The Dbd Domain Of Human Dna Ligase Iv Apo Form Length = 240 Back     alignment and structure 
Iteration: 1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/213 (43%), Positives = 137/213 (64%), Gaps = 17/213 (7%)
Query: 12  LVSLFNWIQKTKPAAKKRSKFRKFLDT-----------YCDSVD-YFSALRLILPSLDRE 59
           L S    IQK+K  A+K   FR+FLD+           + D  D ++ A+RLILP L+RE
Sbjct: 19  LCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERE 78
Query: 60  RGSYGLKESVLANCLIDALGMSKDSADAVRLINWRK-GGAAPNAGNFPMVAAEVLQRRQG 118
           R +YG+KE++LA   I+ L + +D  DA++L+N+R   G   +AG+F M+A  VL+ R  
Sbjct: 79  RMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPR-C 137
Query: 119 MISGGLTIKELNDLLDRLASSENRAEKISV---LSTLIKKTNAQEMKWIIMIILKDLKLG 175
           +  G LTI+++NDLLD +AS+ +   K  +   L  LI +++A E KW+I +I+KDLKLG
Sbjct: 138 LQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLG 197
Query: 176 ISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKD 208
           +S+++IF  FH DA +L NVT DL+ VC +L D
Sbjct: 198 VSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHD 230
>pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus Length = 621 Back     alignment and structure
>pdb|3L2P|A Chain A, Human Dna Ligase Iii Recognizes Dna Ends By Dynamic Switching Between Two Dna Bound States Length = 579 Back     alignment and structure
>pdb|3RR5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sp. 1519 Length = 570 Back     alignment and structure
>pdb|2CFM|A Chain A, Atp-Dependent Dna Ligase From Pyrococcus Furiosus Length = 561 Back     alignment and structure
>pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus Length = 571 Back     alignment and structure
>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To 5'-Adenylated, Nicked Dna Length = 688 Back     alignment and structure
>pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From Archaeoglobus Fulgidus Length = 558 Back     alignment and structure
>pdb|3VNN|A Chain A, Crystal Structure Of A Sub-Domain Of The Nucleotidyltransferase (Adenylation) Domain Of Human Dna Ligase Iv Length = 139 Back     alignment and structure
>pdb|3II6|X Chain X, Structure Of Human Xrcc4 In Complex With The Tandem Brct Domains Of Dna Ligaseiv. Length = 263 Back     alignment and structure
>pdb|1VS0|A Chain A, Crystal Structure Of The Ligase Domain From M. Tuberculosis Ligd At 2.4a Length = 310 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1160
3l2p_A579 DNA ligase 3; DNA ligase, DNA repair, ATP-binding, 1e-143
2cfm_A561 Thermostable DNA ligase; protein-nucleotide comple 1e-138
2hiv_A621 Thermostable DNA ligase; ATP-dependent, open confo 1e-137
3gde_A558 DNA ligase; DNA-binding domain, adenylation domain 1e-132
1x9n_A688 DNA ligase I; 5'-adenylated nicked DNA, protein-DN 1e-126
1vs0_A310 Putative DNA ligase-like protein RV0938/MT0965; OB 1e-53
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 8e-43
1a0i_A348 DNA ligase; DNA replication; HET: DNA ATP; 2.60A { 7e-42
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 1e-41
3vnn_A139 DNA ligase 4; non-homologous END joining, DNA repa 8e-37
1fvi_A297 Chlorella virus DNA ligase-adenylate; adenylated D 4e-22
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 2e-17
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 8e-09
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 5e-17
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 7e-05
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 8e-15
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 2e-07
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 1e-14
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 9e-11
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 2e-07
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 1e-10
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 3e-10
1t15_A214 Breast cancer type 1 susceptibility protein; prote 3e-10
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 5e-10
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 5e-07
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 8e-10
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 8e-08
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 1e-09
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 6e-06
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 1e-09
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 3e-04
2vug_A389 PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transfe 2e-09
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 7e-09
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 4e-06
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 1e-08
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 3e-07
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 5e-04
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 6e-07
3qwu_A370 DNA ligase; structural genomics, PSI-2, midwest ce 1e-06
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 8e-06
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 3e-05
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 1e-05
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 6e-04
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 2e-05
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 2e-05
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 7e-04
3kyh_C461 MRNA-capping enzyme subunit alpha; 5' modification 3e-04
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 4e-04
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 9e-04
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} Length = 579 Back     alignment and structure
 Score =  442 bits (1138), Expect = e-143
 Identities = 138/614 (22%), Positives = 234/614 (38%), Gaps = 68/614 (11%)

Query: 12  LVSLFNWIQKTKPAAKKRSKFRKFLDTYCD----SVDYFSALRLILPSLDRERGSYGLKE 67
              L   +        K    + FL           D +  ++L+LP     +  Y L +
Sbjct: 12  FRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLP--GVIKTVYNLND 69

Query: 68  SVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMI---SGGL 124
             +          + D                   G+         ++ +         L
Sbjct: 70  KQIVKLFSRIFNCNPDDMARDL-----------EQGDVSETIRVFFEQSKSFPPAAKSLL 118

Query: 125 TIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHE 184
           TI+E+++ L RL+      E+   L  +  +  A ++K II +I  DLK+    K +   
Sbjct: 119 TIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDA 178

Query: 185 FHPDAEDLFNVTCDLKLVCEKLKDRNQR---------HKRQDIEVGKAVRPQLAMRIGDA 235
             P+A + F  + +L+ V E++    Q                 +   V+P LA      
Sbjct: 179 LDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSV 238

Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE--YGHAMSKIIEQNVL 293
             A +K     +  E K+DG+R+Q+HKNG    YFSRS          H    I +    
Sbjct: 239 EYAMKKCPNG-MFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPG 297

Query: 294 VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVI 353
               ILD E+L+ D    +   FG+     KAA    +     +C F FD +Y  D S++
Sbjct: 298 GHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDAN-----VCLFVFDCIYFNDVSLM 352

Query: 354 HQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKET 413
            + L ER + L   +     R+                             ++       
Sbjct: 353 DRPLCERRKFLHDNMVEIPNRIM-FSE----------------MKRVTKALDLADMITRV 395

Query: 414 IENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIGGYYGSGRRGGE 470
           I+   EG+VLKD+   +EPG R   WLK+K +Y+  G+     D++++G +YG G +GG 
Sbjct: 396 IQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGM 453

Query: 471 VAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSF 530
           ++ FL+   +   P +  +++ +  +   G  D  L  +  +L     K        PS+
Sbjct: 454 MSIFLMGCYD---PGS--QKWCTVTKCAGGHDDATLARLQNELDMV--KISKDPSKIPSW 506

Query: 531 YQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHD 590
            +V  N    PD  +  P+K+ +  IT    +      +   S+RFPR  R+R DK W  
Sbjct: 507 LKV--NKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKS 564

Query: 591 CLDVQSFVELVHSS 604
             ++    EL   S
Sbjct: 565 ATNLPQLKELYQLS 578
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Length = 561 Back     alignment and structure
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Length = 621 Back     alignment and structure
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Length = 558 Back     alignment and structure
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Length = 688 Back     alignment and structure
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} Length = 310 Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 Back     alignment and structure
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 Length = 348 Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Length = 264 Back     alignment and structure
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} Length = 139 Back     alignment and structure
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* Length = 297 Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107 Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107 Back     alignment and structure
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} Length = 389 Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 Back     alignment and structure
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} Length = 370 Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 Back     alignment and structure
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} Length = 461 Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Length = 241 Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1160
3l2p_A579 DNA ligase 3; DNA ligase, DNA repair, ATP-binding, 100.0
2hiv_A621 Thermostable DNA ligase; ATP-dependent, open confo 100.0
3gde_A558 DNA ligase; DNA-binding domain, adenylation domain 100.0
2cfm_A561 Thermostable DNA ligase; protein-nucleotide comple 100.0
1x9n_A688 DNA ligase I; 5'-adenylated nicked DNA, protein-DN 100.0
1vs0_A310 Putative DNA ligase-like protein RV0938/MT0965; OB 100.0
1a0i_A348 DNA ligase; DNA replication; HET: DNA ATP; 2.60A { 100.0
1fvi_A297 Chlorella virus DNA ligase-adenylate; adenylated D 100.0
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 100.0
4htp_A240 DNA ligase 4; helical domain, DNA binding domain, 100.0
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 100.0
1p16_A395 GTP--RNA, mRNA capping enzyme alpha subunit; guany 100.0
1ckm_A330 MRNA capping enzyme; nucleotidyltransferase; HET: 99.96
3vnn_A139 DNA ligase 4; non-homologous END joining, DNA repa 99.92
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 99.84
3kyh_C461 MRNA-capping enzyme subunit alpha; 5' modification 99.84
3rtx_A343 MRNA-capping enzyme; guanylyltransferase, RNA poly 99.83
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 99.79
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 99.78
1t15_A214 Breast cancer type 1 susceptibility protein; prote 99.74
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 99.73
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 99.72
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 99.7
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 99.69
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 99.51
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 99.47
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 99.47
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 99.45
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 99.39
2vug_A389 PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transfe 99.35
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 99.34
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 99.33
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 99.32
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 99.31
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 99.3
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 99.28
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 99.27
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 99.26
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 99.26
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 99.25
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 99.24
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 99.23
3qwu_A370 DNA ligase; structural genomics, PSI-2, midwest ce 99.22
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 99.17
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 99.16
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 99.16
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 99.15
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 99.12
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 99.1
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 99.09
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 98.98
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 98.93
3pc7_A88 DNA ligase 3; DNA repair, BRCT domain, protein:pro 98.89
2dun_A133 POL MU, DNA polymerase MU; layers A/B/A, parallel 98.79
3pc7_A88 DNA ligase 3; DNA repair, BRCT domain, protein:pro 98.77
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 98.75
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 98.72
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 98.61
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 98.6
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 98.55
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 98.52
1t15_A214 Breast cancer type 1 susceptibility protein; prote 98.51
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 98.44
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 98.41
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 98.4
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 98.39
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 98.37
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 98.33
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 98.22
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 98.21
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 98.14
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 98.13
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 98.13
2dun_A133 POL MU, DNA polymerase MU; layers A/B/A, parallel 98.12
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 98.1
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 98.01
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 98.0
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 97.98
1ik9_C37 DNA ligase IV; DNA END joining, double-strand brea 97.92
2hvq_A335 ORF1, hypothetical 37.6 kDa protein in GP24-HOC in 97.65
1s68_A249 RNA ligase 2; ribonucleic acid ligase, RNA repair; 97.61
1ta8_A332 DNA ligase, NAD-dependent; nucleotidyl transferase 97.54
2l42_A106 DNA-binding protein RAP1; BRCT domain, protein bin 97.53
2l42_A106 DNA-binding protein RAP1; BRCT domain, protein bin 97.34
1b04_A318 Protein (DNA ligase); DNA replication; 2.80A {Geob 97.3
3t7k_A256 RTT107, regulator of TY1 transposition protein 107 97.23
4glw_A305 DNA ligase; inhibitor, ligase-ligase inhibitor com 97.11
4glx_A586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 96.94
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 96.73
1zau_A328 DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacteriu 96.63
3uq8_A322 DNA ligase; adenylated protein, ATP-grAsp, rossman 96.55
1xk5_A204 Snurportin-1; protein-RNA-complex, transport prote 96.5
3jsl_A318 DNA ligase; NAD+-dependent, DNA damage, DNA repair 96.35
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 96.27
2c5u_A375 RNA ligase, T4 RNA ligase 1; nucleotidyl transfera 96.25
1xdn_A277 RNA editing ligase MP52; HET: MSE ATP; 1.20A {Tryp 96.19
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 95.98
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 95.57
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 95.57
3gjx_B365 Snurportin-1; transport, cytoplasm, nucleus, RNA-b 95.52
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 95.51
3sgi_A615 DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tub 95.45
4e6n_A427 Metallophosphoesterase; RNA repair, RNA ligase, li 95.45
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 95.08
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 94.79
2hiv_A621 Thermostable DNA ligase; ATP-dependent, open confo 92.55
3huf_A325 DNA repair and telomere maintenance protein NBS1; 88.94
4gns_A290 Chitin biosynthesis protein CHS5; FN3, BRCT, tetra 87.71
3gde_A558 DNA ligase; DNA-binding domain, adenylation domain 86.05
2cfm_A561 Thermostable DNA ligase; protein-nucleotide comple 85.69
4gns_A290 Chitin biosynthesis protein CHS5; FN3, BRCT, tetra 85.43
1x9n_A688 DNA ligase I; 5'-adenylated nicked DNA, protein-DN 81.65
3qbz_A160 DDK kinase regulatory subunit DBF4; FHA domain,RAD 81.13
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2e-99  Score=919.06  Aligned_cols=553  Identities=25%  Similarity=0.416  Sum_probs=450.2

Q ss_pred             CCCCcHHHHHHHHHHHHhhCChHHHHHHHHHHHhhcCCC----chHhhhHhhcCCCCCcCcccCCCCHHHHHHHHHHHhC
Q 001082            4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDALG   79 (1160)
Q Consensus         4 ~~~~~F~~l~~lle~i~~~~~~~~K~~~l~~~l~~~~~~----~~~~p~lrLllp~~d~er~~ygike~~L~k~~~~~lg   79 (1160)
                      .++|+|++||++|++|++++++++|+.+|++||.++..+    .++||++|+|+|..+  +++|||++++|+|+|++++|
T Consensus         4 ~~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~--~~~~gi~ek~l~k~~~~~~g   81 (579)
T 3l2p_A            4 HKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVI--KTVYNLNDKQIVKLFSRIFN   81 (579)
T ss_dssp             SGGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTS--CCCCSCCHHHHHHHHHHHHT
T ss_pred             cccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCcccccchHHHHHHHhCCCcc--CcccCCcHHHHHHHHHHHHC
Confidence            457999999999999999999999999999999998543    589999999999997  46999999999999999999


Q ss_pred             CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhhc--CC-CCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Q 001082           80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQ--GM-ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT  156 (1160)
Q Consensus        80 l~~~s~~~~~L~~wk~~~~~~~~GD~~~~a~~vl~~r~--~~-~~~~LTI~eVn~~Ld~LA~~~~~~~k~~iL~~ll~~~  156 (1160)
                      ++.+.  ..++  |       ..||||.+|..++..+.  .. .+++|||.+||+.|++||..+|...+..+|..|+.+|
T Consensus        82 ~~~~~--~~~~--~-------~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~  150 (579)
T 3l2p_A           82 CNPDD--MARD--L-------EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC  150 (579)
T ss_dssp             SCHHH--HHHH--G-------GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC
T ss_pred             cCHHH--HHHH--H-------HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Confidence            98753  3333  3       35999999888765432  22 3579999999999999999999888889999999999


Q ss_pred             CHHHHHHHHHHHhhhhccCCcccccccccCccHHHHHhhhCCHHHHHHHHhhhhc---------cccccccccCCccccc
Q 001082          157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQ---------RHKRQDIEVGKAVRPQ  227 (1160)
Q Consensus       157 s~~E~k~l~RiIlkdLriGi~e~til~~~hpda~~~~~~~~DL~~V~~~L~~~~~---------~~~~~~i~~g~p~~Pm  227 (1160)
                      |+.|+|||+|||+++||||+++++|+.+|||+|.++|++++||+.||+.+.+...         .+....+.+|.||+||
T Consensus       151 ~~~E~k~l~R~i~~~lriG~~e~~vl~a~~~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~PM  230 (579)
T 3l2p_A          151 TANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPM  230 (579)
T ss_dssp             CSHHHHHHHHHHTTCCSSSCCHHHHHHTTCTTHHHHHHHSCCHHHHHHHHHHHHHSCC--------CCCCCCTTSCCCCC
T ss_pred             CHHHHHHHHHHHHhhhhcccchhHHHHHhCHHHHHHHhhcCCHHHHHHHHHhhchhhhcccccccccccccCCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999988754211         1223567889999999


Q ss_pred             cccccCChHHHHHhcCCCcEEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc-chhhHHHHHHHhc-ccCceeeeeeEEE
Q 001082          228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNV-LVDRCILDGEMLV  305 (1160)
Q Consensus       228 LA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~~g~~v~~fSR~g~d~t~-~~p~l~~~l~~~~-~~~~~ILDGElv~  305 (1160)
                      ||+++.+++++++++. ..|++|+||||+|+|+|++|+++++|||||++++. ..+.+.+.+...+ ...+||||||||+
T Consensus       231 LA~~~~~~~~~~~~~~-~~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~~p~~~~~l~~~l~~~~~~~~~~iLDGElv~  309 (579)
T 3l2p_A          231 LAEACKSVEYAMKKCP-NGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLL  309 (579)
T ss_dssp             EEEECCCHHHHHHHCT-TCEEEEECCCSEEEEEEEETTEEEEECTTSCBCCGGGTTTGGGTHHHHSTTCSEEEEEEEEEE
T ss_pred             cCCcCCCHHHHHhhCC-CCeEEEEccCcEEEEEEEECCEEEEECCCCCccChhHHHHHHHHHHHhcCcCCceEEEeEEEE
Confidence            9999999988888875 46999999999999999999999999999999842 1222333332233 2468999999999


Q ss_pred             EeCCCCcccccccHHHHHHHhccCCCCCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCCCcceeeccCCCCC
Q 001082          306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLN  385 (1160)
Q Consensus       306 ~d~~~~~~~pF~~lq~i~~~~r~~~~~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~~~~~i~~p~~~~~  385 (1160)
                      ||+.+++++||+.++...+..   . .+ .+++|++|||||+||++|++.||.+||++|++++.+.++++.+.       
T Consensus       310 ~d~~~g~~~~F~~L~~~~~~~---~-~~-~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~-------  377 (579)
T 3l2p_A          310 IDNKTGKPLPFGTLGVHKKAA---F-QD-ANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFS-------  377 (579)
T ss_dssp             BCTTTCCBCCGGGGSHHHHHH---C-SS-CCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEEEC-------
T ss_pred             EeCCCCcccCHHHHHHHhhhh---c-cc-CCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCCCeEEEe-------
Confidence            998778889999887533221   1 12 34999999999999999999999999999999998877665432       


Q ss_pred             ccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEecCCCCCcCCCCCCCeEEEccccccC---CCcccEEEEEEEe
Q 001082          386 SHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA---GSDLDVLIIGGYY  462 (1160)
Q Consensus       386 ~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK~~ds~Y~pGkRs~~WlKlKpey~~~---g~~lDlvVIG~~~  462 (1160)
                                ....+.+.+++.++|+++++.|+||||+|+++|+|.||+|  +|+|+|++|+++   ++++|+||||+++
T Consensus       378 ----------~~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~vViG~~~  445 (579)
T 3l2p_A          378 ----------EMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFY  445 (579)
T ss_dssp             ----------CEEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE--EEEEECTTTCC---CCEEEEEEEEEEEC
T ss_pred             ----------eeEEcCCHHHHHHHHHHHHHhCCCceEEecCcCCCCCCCe--eeEEEechhhccccccccccEEEEEEEe
Confidence                      1234567899999999999999999999999999999988  899999999874   5799999999999


Q ss_pred             cCCCCCCccceEEEEEecCCCCCCCCceEEEEeeecCCCCHHHHHHHHHhhcccccccCCCCCCCCCcccccCCCCCCCc
Q 001082          463 GSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPD  542 (1160)
Q Consensus       463 G~Grr~g~~gsfllg~~d~~~~~~~~~~f~sv~kVgtG~sdeel~~l~~~l~~~~~~~~~~~~~pP~~~~~~~~~~~~Pd  542 (1160)
                      |+|+++|.+|+|+||++|+++     +.|+++|+||||||++++++|.+.|++++...  +...+|.|+.+.  ....||
T Consensus       446 G~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~--~~~~~~~~~~~~--~~~~pd  516 (579)
T 3l2p_A          446 GQGSKGGMMSIFLMGCYDPGS-----QKWCTVTKCAGGHDDATLARLQNELDMVKISK--DPSKIPSWLKVN--KIYYPD  516 (579)
T ss_dssp             CCTTSCSSCCEEEEEEECTTT-----SSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC----------------------
T ss_pred             CCCCCCCceeEEEEEEEeCCC-----CeEEEecCccCCCCHHHHHHHHHHhhcccccc--CCccCCceeecC--CCCCCc
Confidence            999999999999999998654     37999999999999999999999999987642  112246676543  356899


Q ss_pred             EEEeCCcceEEEEEEeeeeeeeccccc-CCceeecceeeeeecCCCccCcCCHHHHHHHHHcc
Q 001082          543 VWIESPEKSIILSITSDIRTIRSEVFS-APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS  604 (1160)
Q Consensus       543 vwi~~P~~s~Vlev~~~i~~~~s~~~~-~g~tLRFPR~~riR~DK~~~d~~t~~el~el~~~~  604 (1160)
                      +|+..|..++||||+++.. ..|+.|+ .|+|||||||.|||+||+|+||+|++++.+||+.+
T Consensus       517 ~~~~~P~~~~V~Ei~~~~i-~~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~~  578 (579)
T 3l2p_A          517 FIVPDPKKAAVWEITGAEF-SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS  578 (579)
T ss_dssp             --------CEEEEEEESCE-EECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHTC
T ss_pred             EEEecCCCCeEEEEEeeEE-eecCCcccCCEEEECCeEEEEeCCCChHHCCCHHHHHHHHhhc
Confidence            9985588889999997644 3677775 79999999999999999999999999999999754
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Back     alignment and structure
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Back     alignment and structure
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Back     alignment and structure
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 Back     alignment and structure
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A* Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3 Back     alignment and structure
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B* Back     alignment and structure
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Back     alignment and structure
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Back     alignment and structure
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} Back     alignment and structure
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A* Back     alignment and structure
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4 Back     alignment and structure
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A* Back     alignment and structure
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2 Back     alignment and structure
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A Back     alignment and structure
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} Back     alignment and structure
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A* Back     alignment and structure
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens} Back     alignment and structure
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A* Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} Back     alignment and structure
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4 Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis} Back     alignment and structure
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A* Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Back     alignment and structure
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Back     alignment and structure
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1160
d1x9na3220 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human ( 5e-34
d1x9na2148 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (H 9e-29
d1a0ia2239 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-te 2e-20
d1x9na1272 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human ( 3e-17
d1fvia2188 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-te 4e-16
d1s68a_233 d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Ba 2e-14
d1wf6a_132 c.15.1.5 (A:) DNA topoisomerase II binding protein 3e-14
d1in1a_88 c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sa 7e-13
d1in1a_88 c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sa 7e-05
d1cdza_96 c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom 2e-11
d1cdza_96 c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom 0.003
d1p16a2245 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subu 2e-11
d1t15a2102 c.15.1.3 (A:1758-1859) Breast cancer associated pr 5e-09
d1t15a2102 c.15.1.3 (A:1758-1859) Breast cancer associated pr 0.003
d1ckma2228 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA 1e-08
d1t15a1109 c.15.1.3 (A:1649-1757) Breast cancer associated pr 2e-06
>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 220 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
family: ATP-dependent DNA ligase catalytic domain
domain: DNA ligase I (LIG1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 5e-34
 Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 23/235 (9%)

Query: 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLD 276
           +  G  ++P LA          ++        E K+DG R QIH   G E+  FSR+  D
Sbjct: 1   LSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 60

Query: 277 HSEYGHAMSKIIEQNVL--VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDR 334
           ++     +   I +  L  V   ILD E + WD    +   F       +   D      
Sbjct: 61  NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQV 120

Query: 335 QVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEP 394
           QV C +AFD++Y+   S++ + L  R +LL++    ++G                     
Sbjct: 121 QV-CLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEF-----------------VF 162

Query: 395 CWSLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYI 447
             SL   +++++ +F ++++++  EG+++K  D+ + +E   RS  WLKLK +Y+
Sbjct: 163 ATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYL 217
>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 148 Back     information, alignment and structure
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Length = 239 Back     information, alignment and structure
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 Back     information, alignment and structure
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 188 Back     information, alignment and structure
>d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Length = 233 Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Length = 245 Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 228 Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1160
d1x9na3220 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 100.0
d1x9na2148 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 99.96
d1a0ia2239 ATP-dependent DNA ligase, N-terminal domain {Bacte 99.95
d1fvia2188 ATP-dependent DNA ligase, N-terminal domain {Chlor 99.94
d1x9na1272 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 99.94
d1ckma2228 RNA guanylyltransferase (mRNA capping enzyme), N-t 99.71
d1p16a2245 mRNA capping enzyme alpha subunit {Yeast (Candida 99.67
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 99.48
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 99.4
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 99.35
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 99.34
d1s68a_233 RNA ligase 2, N-terminal domain {Bacteriophage T4 99.27
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 99.24
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 99.21
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 99.12
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 98.98
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 98.85
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 98.83
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 98.56
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 98.45
d1a0ia1109 ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 97.97
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 97.86
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 97.65
d1fvia1104 ATP-dependent DNA ligase {Chlorella virus PBCV-1 [ 97.56
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 97.23
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 97.08
d1b04a_312 Adenylation domain of NAD+-dependent DNA ligase {B 96.92
d1ta8a_313 Adenylation domain of NAD+-dependent DNA ligase {E 96.83
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 95.95
d1dgsa3314 Adenylation domain of NAD+-dependent DNA ligase {T 95.81
d1xdna_265 RNA editing ligase MP52 {Trypanosoma brucei [TaxId 95.04
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 93.25
d1x9na1272 DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 91.16
>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
family: ATP-dependent DNA ligase catalytic domain
domain: DNA ligase I (LIG1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-42  Score=366.69  Aligned_cols=211  Identities=26%  Similarity=0.512  Sum_probs=176.0

Q ss_pred             cccCCccccccccccCChHHHHHhcCCCcEEEEEecceEEEEEEE-eCCEEEEEeCCCCCCCcchhhHHHHHHHhc--cc
Q 001082          218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHSEYGHAMSKIIEQNV--LV  294 (1160)
Q Consensus       218 i~~g~p~~PmLA~~~~~~~~~~~~~~~~~~~vE~K~DGeR~qih~-~g~~v~~fSR~g~d~t~~~p~l~~~l~~~~--~~  294 (1160)
                      |+||.|++||||+++..+.+.++++.+.+|++|+||||+|||+|+ .+++|++|||+|+++|..+|++...+....  ..
T Consensus         1 ~~pg~P~~PMLA~~~~~~~~~~~~~~~~~~~~e~K~DG~R~~i~~~~~~~v~l~SR~g~~~t~~~p~l~~~~~~~~~~~~   80 (220)
T d1x9na3           1 LSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSV   80 (220)
T ss_dssp             CCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCBCTTTCHHHHHTSGGGBCTTC
T ss_pred             CCCCCCCCCeeCCCCCChHHHHhhcCCCcEEEEEeECcEEEEEEEECCCEEEEEeCCCccccccchhHHHHHHHhhcCCC
Confidence            589999999999999988888899988899999999999999998 578999999999999998999877654322  24


Q ss_pred             CceeeeeeEEEEeCCCCcccccccHHHHHHHhccCCC--CCCccEEEEEEeeeeeCCcccccCCHHHHHHHHHHhhcCCC
Q 001082          295 DRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLS--SDRQVLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSK  372 (1160)
Q Consensus       295 ~~~ILDGElv~~d~~~~~~~pF~~lq~i~~~~r~~~~--~~~~~~~~~vFDiL~lng~sl~~~pl~eRr~~L~~~v~~~~  372 (1160)
                      .+|||||||++||.....+.+|+   .+....+....  ....+++|+|||||++||.++++.||.+|+++|++++.+.+
T Consensus        81 ~~~iLDGEl~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vFDil~~~g~~~~~~p~~eR~~~L~~~~~~~~  157 (220)
T d1x9na3          81 TSFILDTEAVAWDREKKQIQPFQ---VLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETE  157 (220)
T ss_dssp             CCEEEEEEEEEECTTTCSBCCHH---HHTTSCSSCCCGGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCBT
T ss_pred             cceeeeeeeEEecCCCCccchHH---HHhhhhhcccchhhhccccceEEEEEEEECCcchhhhhHHHHHHHHHHHhccCC
Confidence            68999999999998766666664   33222221111  11234999999999999999999999999999999998887


Q ss_pred             CcceeeccCCCCCccccCCCCCccceecCCHHHHHHHHHHHHHcCCceEEEe--cCCCCCcCCCCCCCeEEEcccccc
Q 001082          373 GRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIR  448 (1160)
Q Consensus       373 ~~~~i~~p~~~~~~~v~~~~~~~~~~~~~~~~ei~~~~~~ai~~g~EGlVlK--~~ds~Y~pGkRs~~WlKlKpey~~  448 (1160)
                      +++.++                 ....+++.+++.++++.++++|+||||+|  +++|+|.+|+|+.+|+|+||+|++
T Consensus       158 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~EGim~K~~~~~s~Y~~GkRs~~w~K~K~ey~d  218 (220)
T d1x9na3         158 GEFVFA-----------------TSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLD  218 (220)
T ss_dssp             TTEEEC-----------------CEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCSEEEEEEEHHHHH
T ss_pred             CeEEEE-----------------EeeccCCHHHHHHHHHHHHHCCCceEEEeccCCCCCeecCCcCCCeEEEcccccC
Confidence            765432                 13456889999999999999999999999  579999999999999999999975
>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fvia1 b.40.4.6 (A:190-293) ATP-dependent DNA ligase {Chlorella virus PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure