Citrus Sinensis ID: 001095

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------116
MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLDWKPDSSRVKPEDNSCSTGISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRARLVDPGDEIEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTNS
cHHHHHHHHHHHccEEEEEEEEEEEEEccccccEEEEEEEEEEEcccccccccccccccHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEccccHHccccccccccccccccccccHHHHHHHHcccccccccccccccEEEEEcHHHHHHHHHHHHHHccccccEEEEEccccccccHHHcccccEEEEEHHHHHHHccccccccccccEEEEEEEccccccccccHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHcccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHccccHHHHcccccccEEEEcccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccccEEEEEEEcccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccHHHHHHHHHHHHcccccccc
ccHHHHHHHHHHHcEEEEEEEEEEEEEccccEEEEEEEEEEEccHHHHccccccccHHHHHHHHHHccccHHHHHHHHcccccccccccccEEEEccccEEcccccccEEEcccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHccccccEEEEEEccccccccccccHHHccccEEccccccHHHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEEccccccccccccHEccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccccccHHHcccccccHcHccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHccccccccccEEEEccccccccccccccHHHccccccccEccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHcccccccccccccccHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHHHHHccHHHHcccccccEEEEEcHHHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHccccEEEEEHHHHHHHcccccccHHHcccEEEEEEEccHHccccHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHccccccccccccHccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccc
MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPiaawsgwqfpksgaiagslfrhvscdwekrksvlldggecfkdgcdssiwnisdchvldwkpdssrvkpednscstgisdiaDDIVISILTRLGPIDLVRIAATCRHLRCLAASImpcmklklfpHQQAAVEWMLHREWnaevlrhplyidlatedGFYFYVNTVsgdiatgtaptmrdfhggmfcdepglgkTITALSLILKtqgtladppdgvkiiwcthngdprcgyydlsgdkltcnnmclgkrtfsqnarrrqlsvgkftpmddlkcpllkrarlvdpgdeiegfssfsdvdmisplvassepathLVRCTRNLGQVKKNLFHTYdeesnicndrnakgnstakkranssrqvpkrnqvGLSYVVSnscerpekvstdhfacnetwvqcdaCHKWRKLLDASVADATAAWFcsmnsdpthqscgdpeeawdncqsitylpgfhakgtsdgkkqNVSFFISVLKEHYLLINSMTKKALTWLAklspdelsemettglaspilgsyaagetqGFHKIFQAFGLIRRVEKGitrwyypktldNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKtqiqqhvrpgqlhlfvwtdhkkpsahslaWDYDVVITTFNRLSaewgrrkkspmmQVHWLRVMLDeghtlgsslNLTNKLQMAISLTASnrwlltgtptpntpnsqlshlQPMLKFLHEEaygqnqkawdggilrpfEAEMEEGRSRLLQLLHRCMISARKtdlqtiplcikevtflnfteehagTYNELVVTVRRNILmadwndpshvesllnpkqwkfrsttiRNLRLSCCVaghikvtdagEDIQETMDVLVEngldplsqEYAFIKYNllnggnclrhILCLDCVamdsekcslpgcgflyemqspeiltrpenpnpkwpvpqdlielqpsyrqwsntntflkqdlyrpnlesnkalpdkVIIFSQFLEHIHVIEQQLTVAGIkfagmyspmhssnkiksldmfRHDASCLALLMDgsaslgldlsFVTRVFLMEPIWDRSMEEQVISRAHrmgatrpiHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEElvkperegarshrtlhdfaesnylsHLSFVRTNS
msvvhqlqslvnqkclkiEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLDWKpdssrvkpednscstgisdiaddIVISILTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMCLGkrtfsqnarrrqlsvgkftpmddlkcpLLKRARLVDPGDEIEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTydeesnicndrnakgnstakkranssrqvpkrnqvgLSYVVSNSCERPEKVSTDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRlsaewgrrkkspMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISArktdlqtipLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPshvesllnpkqwkFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAhrmgatrpIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEelvkperegarshrtlhdfaesnylshlsfvrtns
MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLDWKPDSSRVKPEDNSCSTGisdiaddivisiLTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRARLVDPGDEIEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTldnlafdlaalrlalCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGtptpntpnSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTNS
******LQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLDWK*************STGISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRARLVDPGDEIEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDE*********************************LSYVVSNSC****KVSTDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMN************EAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSP*******TTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG***************PMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQ****************VPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLL*************************************
*SVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSV*****ECFKDGCDSSIWNISDCHV********************************LTRLGPIDLVR*****************CMKLKLFPHQQAAVEWMLHREW*********YIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILK***********************************************************************************************************************************************************************************************************************************************************************************************************************QGFHKIFQAFGLIRRVE**********************************LYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAE******SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILR************LLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNIL*****************************RLSCC*************************************YNLLNGGNCLRHILCLDCVA**S**CSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE***********************************SNYLS**SFV****
MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLDWKPD***********STGISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRARLVDPGDEIEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAK*****************RNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMNS***********EAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVK********HRTLHDFAESNYLSHLSFVRTNS
MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLDWKPDSSRVKPEDNSCSTGISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMCLGKRTFSQNA******************************DEIEGF**************SSEPATHLVRCTRNLGQVKKNLFHTYDEESNI************************************************FACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELV********SHRTLHDFAESNYLSHLS******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLDWKPDSSRVKPEDNSCSTGISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRARLVDPGDEIEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1158 2.2.26 [Sep-21-2011]
Q9M1I11378 F-box protein At3g54460 O yes no 0.977 0.821 0.569 0.0
Q9FNI61029 Putative SWI/SNF-related no no 0.418 0.471 0.261 1e-34
Q9FIY71277 Putative SWI/SNF-related no no 0.414 0.375 0.253 2e-25
Q5ACX11084 DNA repair protein RAD5 O N/A no 0.427 0.456 0.245 1e-23
P328491169 DNA repair protein RAD5 O yes no 0.463 0.459 0.249 3e-23
Q753V51085 DNA repair protein RAD5 O yes no 0.414 0.442 0.221 3e-19
P79051861 ATP-dependent helicase rh yes no 0.423 0.569 0.215 1e-18
Q6PCN71003 Helicase-like transcripti yes no 0.147 0.170 0.320 3e-17
Q9FF61881 Putative SWI/SNF-related no no 0.167 0.220 0.293 7e-17
Q952161005 Helicase-like transcripti no no 0.159 0.184 0.297 9e-17
>sp|Q9M1I1|FB304_ARATH F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1 Back     alignment and function desciption
 Score = 1392 bits (3604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/1253 (56%), Positives = 877/1253 (69%), Gaps = 121/1253 (9%)

Query: 1    MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIA 60
            +SVV QL +LV  KCLKI  RV++V+ GENG  RA VLVD+YLPI  WSGWQFPKS A A
Sbjct: 132  ISVVQQLHALVANKCLKIICRVVKVDKGENGEERAVVLVDVYLPIELWSGWQFPKSQATA 191

Query: 61   GSLFRHVSCDWEKRKSVLLDGGECFKD--GCDSSIWNISDCHVLDWK-----PDS----- 108
             +LF+H+SCDW  R S+L DG   +++  G   +IW++SDCHV D K     P+S     
Sbjct: 192  AALFKHLSCDWGLRVSIL-DGKSIWEEANGRIKAIWDLSDCHVFDCKLLCNAPNSPKRRL 250

Query: 109  ---------------------SRVKPEDNSCSTGISDIADDIVISILTRLGPIDLVRIAA 147
                                 SRV P  +SC +G+ D++DD++ISIL +L   DL  IAA
Sbjct: 251  FKLHEIFKSLPSPGNHDVSYSSRVLPSTDSCVSGVWDLSDDVLISILMKLDTKDLFSIAA 310

Query: 148  TCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVN 207
             CR  R L + I+PCM LKLFPHQQAAV WML RE  AEV  HPLY+   TEDGF FYVN
Sbjct: 311  VCRLFRSLTSLIVPCMNLKLFPHQQAAVGWMLERERKAEVSSHPLYLSFDTEDGFSFYVN 370

Query: 208  TVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHN 267
             V+GDI T  AP ++DF GGMFCDEPGLGKTITALSLILKTQGT+ADPP+G+ I+WCTH 
Sbjct: 371  AVTGDIITEAAPMVKDFRGGMFCDEPGLGKTITALSLILKTQGTMADPPEGLPIVWCTHK 430

Query: 268  GDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRARLVDP 327
             D +C YY+ + D+ T N+M   KR  S ++ R Q+S   F P+ + K    K+ARL+DP
Sbjct: 431  SDKKCAYYEYTSDQFTSNSMSAVKRFQSPSSCRNQVSFEAFRPLLESKSLPFKQARLMDP 490

Query: 328  GDE-IEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNA 386
             D+ +E  +S  + +  + + AS +      +C ++LG V+KNL   Y+  S +     A
Sbjct: 491  DDQTLESKNSNFENEFETHIPASLDLK---AQCRKSLGNVRKNLLPAYNGASELSEVMEA 547

Query: 387  KGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDACHKWRK 446
            K  S  KK                   +   C+R  K  TD    ++ W+QCD+C KWR+
Sbjct: 548  KRISNWKKCG-----------------MITGCKR--KGLTDSDVESDIWMQCDSCSKWRR 588

Query: 447  LLDASVADATAAWFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSF 506
            ++D  V+   +AWFCS N+DP +QSC DPEE WD  Q I YL GF+ KG S  +  N+SF
Sbjct: 589  IIDEGVSVTGSAWFCSNNNDPAYQSCNDPEELWDKSQPIKYLQGFYTKGASGEESDNISF 648

Query: 507  FISVLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQGFHKIFQ 566
            F SVL+EH   ++S  KKAL WLAKL  ++LS+MET GL  P+LG     +  GF +IF+
Sbjct: 649  FTSVLREHKSSVSSTVKKALIWLAKLPLEKLSQMETVGLPGPVLG--LKLDALGFQRIFR 706

Query: 567  AFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVD 626
            AFGL  RVEKG+T+W+YPK L+NL FD+ AL++ALC+PLD+ RLYLS+ATLIVVP+ LV+
Sbjct: 707  AFGLKSRVEKGVTKWFYPKFLENLVFDVPALKVALCQPLDTFRLYLSKATLIVVPTNLVN 766

Query: 627  HWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQV 686
            HW TQIQ+HV   QL + VW DH + S HSLAWDYDVVITTF+RLSAEW  RKKSP++QV
Sbjct: 767  HWLTQIQKHVCSDQLRILVWADHIELSPHSLAWDYDVVITTFSRLSAEWNPRKKSPLIQV 826

Query: 687  HWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFL 746
            HWLRVMLDEGHTLGSS++LTNK QMA+SLTA NRWLLTGTPTPNTPNSQLSH+QP+LKFL
Sbjct: 827  HWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPTPNTPNSQLSHIQPLLKFL 886

Query: 747  HEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFL 806
            HEE YG+N K W+ GILRPFEAEMEEGR RLLQLL RCMIS+RK DLQ IP CIK+VT+L
Sbjct: 887  HEEVYGENPKFWEAGILRPFEAEMEEGRLRLLQLLQRCMISSRKKDLQMIPPCIKKVTYL 946

Query: 807  NFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGH 866
            NF   HA +YNELV TVRRNIL+ADWNDPSHVESLLN KQWKFRS TI N+RLSCCVAGH
Sbjct: 947  NFLPGHARSYNELVETVRRNILLADWNDPSHVESLLNSKQWKFRSITISNVRLSCCVAGH 1006

Query: 867  IKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNC--------------LRHI 912
            IK+TDAG DI+ETMD L+EN LD  ++EY+FI+ +L+ G NC               RH+
Sbjct: 1007 IKMTDAGHDIKETMDALLENDLDLWTEEYSFIQDSLIGGCNCKRCGEWCRLPVITPCRHL 1066

Query: 913  LCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQ----- 967
            LCLDCVA+DSE+C++ GCG+LYEMQ+PE L RPENPNPKWPVP+DLIELQPSY+Q     
Sbjct: 1067 LCLDCVALDSERCTISGCGYLYEMQTPETLARPENPNPKWPVPKDLIELQPSYKQDDWNP 1126

Query: 968  -WSNTNT------------------------------------------FLKQDLYRPNL 984
             W +T++                                          FL ++L+  + 
Sbjct: 1127 DWQSTSSSKVSYLVDRLRKLHEGNKKSILSFNKTDNDNLEDNPPGTSEAFLGKELHGQDC 1186

Query: 985  ESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCL 1044
             S     DKV+IFSQFLEHIHVIEQQLT AGIKF  MYSPM S NK+K+L MF++DA C+
Sbjct: 1187 GSQMVFVDKVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADCM 1246

Query: 1045 ALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
            ALLMDGS +LGLDLSFVT VFLMEPIWD+S+EEQVISRAHRMGA RPI VETL MRGT+E
Sbjct: 1247 ALLMDGSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIE 1306

Query: 1105 EQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTN 1157
            EQM+ FL+D ++  RLL  + ++ ++E  RS RTLHD  ESNYLSHLSFVR++
Sbjct: 1307 EQMMRFLEDAEKSDRLLSGDYIEAKQETTRSRRTLHDLVESNYLSHLSFVRSD 1359

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1 Back     alignment and function description
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD5 PE=3 SV=1 Back     alignment and function description
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD5 PE=1 SV=1 Back     alignment and function description
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2 Back     alignment and function description
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=3 SV=2 Back     alignment and function description
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 Back     alignment and function description
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1 Back     alignment and function description
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1158
359495006 1408 PREDICTED: F-box protein At3g54460-like 0.996 0.819 0.669 0.0
255544007 1322 conserved hypothetical protein [Ricinus 0.962 0.843 0.644 0.0
224072879 1333 chromatin remodeling complex subunit [Po 0.968 0.841 0.649 0.0
449449272 1366 PREDICTED: F-box protein At3g54460-like 0.979 0.830 0.607 0.0
449487144 1366 PREDICTED: F-box protein At3g54460-like 0.979 0.830 0.606 0.0
356541572 1329 PREDICTED: F-box protein At3g54460-like 0.971 0.846 0.592 0.0
356506967 1311 PREDICTED: F-box protein At3g54460-like 0.972 0.858 0.584 0.0
297820192 1370 SNF2 domain-containing protein [Arabidop 0.977 0.826 0.573 0.0
22331785 1378 F-box protein [Arabidopsis thaliana] gi| 0.977 0.821 0.569 0.0
115442277 1298 Os01g0952200 [Oryza sativa Japonica Grou 0.956 0.853 0.546 0.0
>gi|359495006|ref|XP_002266009.2| PREDICTED: F-box protein At3g54460-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1714 bits (4438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 852/1272 (66%), Positives = 977/1272 (76%), Gaps = 118/1272 (9%)

Query: 1    MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIA 60
            +SVV Q+ +LV  KC+KI ARV+RV     G ARA VLVD+YLPI  WSGWQFP+S + A
Sbjct: 139  ISVVRQIHALVVHKCVKIVARVVRV----CGEARAVVLVDVYLPIELWSGWQFPRSASTA 194

Query: 61   GSLFRHVSCDWEKRKSVLLDGGECFK--DGCDSSIWNISDCHVLDWK------------- 105
            G+LFRH+SCDWE+R SVL++  E +K  DG + S+WN+SDCHVL  K             
Sbjct: 195  GALFRHLSCDWEERSSVLVNHEEYYKYNDGDNRSLWNLSDCHVLGCKLHCNALDPSKKKL 254

Query: 106  ------------------PDSSRVKPEDNSCSTGISDIADDIVISILTRLGPIDLVRIAA 147
                              PDSSRVKP D SC +GI +++DD++I+ILT L P+DLVR++A
Sbjct: 255  FELHEIFKSLPSVAMKGQPDSSRVKPSDASCQSGIWEVSDDVLINILTALAPMDLVRVSA 314

Query: 148  TCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVN 207
            TC HLR LAASIMPCMKLKLFPHQ AAVEWML RE NAE+L HPL+ID  TEDGF FY+N
Sbjct: 315  TCHHLRSLAASIMPCMKLKLFPHQHAAVEWMLQRERNAEILPHPLFIDFLTEDGFAFYIN 374

Query: 208  TVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHN 267
            TV+G+I TG  P +RDF GGMFCDEPGLGKTITALSLILKTQGT ADPPDGV++IWCTHN
Sbjct: 375  TVTGEIVTGMPPLIRDFRGGMFCDEPGLGKTITALSLILKTQGTWADPPDGVQVIWCTHN 434

Query: 268  GDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRARLVDP 327
             D RCGYY+L+ D ++ N M  GKR   Q ARR  LS+ K TPM++ K    +R RLV P
Sbjct: 435  SDQRCGYYELTSDNVSVNKMFSGKRILGQVARRGWLSLDKPTPMENRKYSSPERTRLVIP 494

Query: 328  GDEIEGFSSFSDVDMI-SPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNA 386
            G +I G +      +I SP    S PAT +VRCTR+L +VK+NL + Y+E S    +R  
Sbjct: 495  GVQIAGSTDSCPGKVIKSPTTVRSMPATRVVRCTRSLSRVKRNLVYAYEEASGFGKERKL 554

Query: 387  KGNSTAKKR-ANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDACHKWR 445
            K NS+ +++ AN+ R +    +VG+S+ + + C+R EK S DH  CNETW+QCDACHKWR
Sbjct: 555  KKNSSERRQVANTPRHLSVDKRVGISHGLPHKCKRSEKDSEDHSECNETWIQCDACHKWR 614

Query: 446  KLLDASVADATAAWFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVS 505
            +L + SVADA AAWFCSMNSDP++QSC  PEE+WD+ Q ITYLPGF+AKGT  G++QNVS
Sbjct: 615  RLGEPSVADAAAAWFCSMNSDPSYQSCRVPEESWDDRQPITYLPGFYAKGTPGGEEQNVS 674

Query: 506  FFISVLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSY-AAGETQGFHKI 564
            FF SVLKEHY  INS TKKAL WL KLSPD+LSEM+T GL  P+L ++  +G   GFHKI
Sbjct: 675  FFTSVLKEHYAFINSQTKKALIWLTKLSPDKLSEMDTVGLRRPVLDTHLVSGGDHGFHKI 734

Query: 565  FQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYL 624
            FQAFGL+RRVEKG +RWYYP+ L+NL FDL ALR+ALCEPLDS RLYLSRATL+VVPS L
Sbjct: 735  FQAFGLVRRVEKGTSRWYYPENLENLVFDLPALRIALCEPLDSFRLYLSRATLVVVPSNL 794

Query: 625  VDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMM 684
            VDHWKTQIQ+HV+PGQL ++VWTDHKKP AH+LAWDYDVVITTFNRLSAEW   K+S +M
Sbjct: 795  VDHWKTQIQKHVKPGQLRVYVWTDHKKPCAHNLAWDYDVVITTFNRLSAEWRPHKRSVLM 854

Query: 685  QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLK 744
            QVHWLRVMLDEGHTLGSSLNLTNKLQMA+SL ASNRWLLTGTPTPNTPNSQLSHLQPMLK
Sbjct: 855  QVHWLRVMLDEGHTLGSSLNLTNKLQMAVSLIASNRWLLTGTPTPNTPNSQLSHLQPMLK 914

Query: 745  FLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVT 804
            FLHEE YGQNQK+W+ GILRPFEAEMEEGRSRLL LLHRCMISARK DLQTIP CIK+VT
Sbjct: 915  FLHEEGYGQNQKSWEDGILRPFEAEMEEGRSRLLLLLHRCMISARKADLQTIPPCIKKVT 974

Query: 805  FLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVA 864
            FLNFTEEHA +YNELVVTVRRNILMADWNDPSHVESLLNPKQWKFR +TI+N+RLSCCVA
Sbjct: 975  FLNFTEEHAKSYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRISTIKNVRLSCCVA 1034

Query: 865  GHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCL--------------R 910
            GHIKVTDAGEDIQETMD+LVENGLD +S EYAFIKYNLL GG C+              R
Sbjct: 1035 GHIKVTDAGEDIQETMDILVENGLDTISDEYAFIKYNLLYGGACMRCKEWCRLPVITPCR 1094

Query: 911  HILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQ--W 968
            H+LCLDCVA+DSEKC+ PGCG LYEMQSPEILTRPENPNPKWPVP+DLIELQPSY+Q  W
Sbjct: 1095 HLLCLDCVALDSEKCTFPGCGNLYEMQSPEILTRPENPNPKWPVPKDLIELQPSYKQDTW 1154

Query: 969  ---------------------------------------------------SNTNTFLKQ 977
                                                               +N N  L+Q
Sbjct: 1155 DPDWQSTSSSKVTYIVKRLKALQEANRKSGYAMDEDSDIKDIDELVSLSEQNNCNALLQQ 1214

Query: 978  DLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF 1037
            D  R N E++   P+KV+IFSQFLEHIHVIEQQLTVAGIKF+GMYSPMHSSNK+KSL  F
Sbjct: 1215 DYTRLNDETSHISPEKVLIFSQFLEHIHVIEQQLTVAGIKFSGMYSPMHSSNKMKSLSTF 1274

Query: 1038 RHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETL 1097
            +HDA C+ALLMDGSA+LGLDLSFVT VFLMEPIWDRSMEEQVISRAHRMGATRPI VETL
Sbjct: 1275 QHDADCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPIRVETL 1334

Query: 1098 AMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFA-----------ESN 1146
            AMRGT+EEQMLEFLQD D CRR LKEE  KP  EG R+HR+LHDFA           ESN
Sbjct: 1335 AMRGTIEEQMLEFLQDADECRRFLKEEFGKPYSEGVRAHRSLHDFAESNYLAHHDLLESN 1394

Query: 1147 YLSHLSFVRTNS 1158
            YL+HLSFVRTNS
Sbjct: 1395 YLAHLSFVRTNS 1406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544007|ref|XP_002513066.1| conserved hypothetical protein [Ricinus communis] gi|223548077|gb|EEF49569.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224072879|ref|XP_002303924.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222841356|gb|EEE78903.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449272|ref|XP_004142389.1| PREDICTED: F-box protein At3g54460-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449487144|ref|XP_004157509.1| PREDICTED: F-box protein At3g54460-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356541572|ref|XP_003539248.1| PREDICTED: F-box protein At3g54460-like [Glycine max] Back     alignment and taxonomy information
>gi|356506967|ref|XP_003522244.1| PREDICTED: F-box protein At3g54460-like [Glycine max] Back     alignment and taxonomy information
>gi|297820192|ref|XP_002877979.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297323817|gb|EFH54238.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22331785|ref|NP_680129.1| F-box protein [Arabidopsis thaliana] gi|75181828|sp|Q9M1I1.1|FB304_ARATH RecName: Full=F-box protein At3g54460 gi|7258349|emb|CAB77566.1| RING finger-like protein [Arabidopsis thaliana] gi|20259494|gb|AAM13867.1| unknown protein [Arabidopsis thaliana] gi|28393845|gb|AAO42330.1| unknown protein [Arabidopsis thaliana] gi|110742559|dbj|BAE99194.1| RING finger -like protein [Arabidopsis thaliana] gi|332645713|gb|AEE79234.1| F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115442277|ref|NP_001045418.1| Os01g0952200 [Oryza sativa Japonica Group] gi|57899941|dbj|BAD87853.1| putative rad8 [Oryza sativa Japonica Group] gi|113534949|dbj|BAF07332.1| Os01g0952200 [Oryza sativa Japonica Group] gi|218189747|gb|EEC72174.1| hypothetical protein OsI_05224 [Oryza sativa Indica Group] gi|222619881|gb|EEE56013.1| hypothetical protein OsJ_04781 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1158
TAIR|locus:5049557121378 AT3G54460 [Arabidopsis thalian 0.473 0.397 0.633 0.0
UNIPROTKB|F1MLM21009 HLTF "Uncharacterized protein" 0.411 0.471 0.245 1.8e-36
TAIR|locus:21625041029 RAD5 [Arabidopsis thaliana (ta 0.152 0.172 0.317 3.6e-36
MGI|MGI:11964371003 Hltf "helicase-like transcript 0.409 0.472 0.256 3.2e-35
UNIPROTKB|I3LM881011 HLTF "Uncharacterized protein" 0.411 0.470 0.245 5.9e-35
UNIPROTKB|E2R9I51007 HLTF "Uncharacterized protein" 0.411 0.472 0.247 1.8e-34
RGD|13090311004 Hltf "helicase-like transcript 0.148 0.171 0.3 5.2e-33
UNIPROTKB|Q145271009 HLTF "Helicase-like transcript 0.412 0.473 0.244 1e-32
ZFIN|ZDB-GENE-030131-3306942 hltf "helicase-like transcript 0.407 0.501 0.238 6e-30
POMBASE|SPAC13G6.01c1133 rad8 "ubiquitin-protein ligase 0.102 0.105 0.358 1.6e-29
TAIR|locus:504955712 AT3G54460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1912 (678.1 bits), Expect = 0., Sum P(4) = 0.
 Identities = 360/568 (63%), Positives = 431/568 (75%)

Query:   418 CERPEKVSTDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEE 477
             C+R  K  TD    ++ W+QCD+C KWR+++D  V+   +AWFCS N+DP +QSC DPEE
Sbjct:   562 CKR--KGLTDSDVESDIWMQCDSCSKWRRIIDEGVSVTGSAWFCSNNNDPAYQSCNDPEE 619

Query:   478 AWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSPDEL 537
              WD  Q I YL GF+ KG S  +  N+SFF SVL+EH   ++S  KKAL WLAKL  ++L
Sbjct:   620 LWDKSQPIKYLQGFYTKGASGEESDNISFFTSVLREHKSSVSSTVKKALIWLAKLPLEKL 679

Query:   538 SEMETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTXXXXXXXXXXX 597
             S+MET GL  P+LG     +  GF +IF+AFGL  RVEKG+T+W+YPK            
Sbjct:   680 SQMETVGLPGPVLGLKL--DALGFQRIFRAFGLKSRVEKGVTKWFYPKFLENLVFDVPAL 737

Query:   598 XXXXCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSL 657
                 C+PLD+ RLYLS+ATLIVVP+ LV+HW TQIQ+HV   QL + VW DH + S HSL
Sbjct:   738 KVALCQPLDTFRLYLSKATLIVVPTNLVNHWLTQIQKHVCSDQLRILVWADHIELSPHSL 797

Query:   658 AWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTA 717
             AWDYDVVITTF+RLSAEW  RKKSP++QVHWLRVMLDEGHTLGSS++LTNK QMA+SLTA
Sbjct:   798 AWDYDVVITTFSRLSAEWNPRKKSPLIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTA 857

Query:   718 SNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRL 777
              NRWLLTG        SQLSH+QP+LKFLHEE YG+N K W+ GILRPFEAEMEEGR RL
Sbjct:   858 CNRWLLTGTPTPNTPNSQLSHIQPLLKFLHEEVYGENPKFWEAGILRPFEAEMEEGRLRL 917

Query:   778 LQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSH 837
             LQLL RCMIS+RK DLQ IP CIK+VT+LNF   HA +YNELV TVRRNIL+ADWNDPSH
Sbjct:   918 LQLLQRCMISSRKKDLQMIPPCIKKVTYLNFLPGHARSYNELVETVRRNILLADWNDPSH 977

Query:   838 VESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAF 897
             VESLLN KQWKFRS TI N+RLSCCVAGHIK+TDAG DI+ETMD L+EN LD  ++EY+F
Sbjct:   978 VESLLNSKQWKFRSITISNVRLSCCVAGHIKMTDAGHDIKETMDALLENDLDLWTEEYSF 1037

Query:   898 IKYNLLNGGNC--------------LRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILT 943
             I+ +L+ G NC               RH+LCLDCVA+DSE+C++ GCG+LYEMQ+PE L 
Sbjct:  1038 IQDSLIGGCNCKRCGEWCRLPVITPCRHLLCLDCVALDSERCTISGCGYLYEMQTPETLA 1097

Query:   944 RPENPNPKWPVPQDLIELQPSYRQ--WS 969
             RPENPNPKWPVP+DLIELQPSY+Q  W+
Sbjct:  1098 RPENPNPKWPVPKDLIELQPSYKQDDWN 1125
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|F1MLM2 HLTF "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2162504 RAD5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1196437 Hltf "helicase-like transcription factor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LM88 HLTF "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9I5 HLTF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1309031 Hltf "helicase-like transcription factor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q14527 HLTF "Helicase-like transcription factor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3306 hltf "helicase-like transcription factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC13G6.01c rad8 "ubiquitin-protein ligase E3 Rad8" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M1I1FB304_ARATHNo assigned EC number0.56900.97750.8214yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1158
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 2e-28
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 3e-21
pfam0749650 pfam07496, zf-CW, CW-type Zinc Finger 2e-15
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 6e-12
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 1e-08
smart0049082 smart00490, HELICc, helicase superfamily c-termina 4e-08
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-06
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 8e-05
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 3e-04
pfam1293747 pfam12937, F-box-like, F-box-like 6e-04
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 0.002
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  123 bits (309), Expect = 2e-28
 Identities = 139/581 (23%), Positives = 220/581 (37%), Gaps = 115/581 (19%)

Query: 585  KTLDNLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHL- 643
            KT+  +A         L   L+S+++YL  A LIVVP+ L+ +WK + ++     +L L 
Sbjct: 371  KTVQTIAL--------LLSLLESIKVYLGPA-LIVVPASLLSNWKREFEKFAPDLRLVLV 421

Query: 644  ----FVWTDHKKPSAHSLA-----WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLD 694
                    D K+ +   L        +DVVITT+  L           + ++ W RV+LD
Sbjct: 422  YHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELL--RRFLVDHGGLKKIEWDRVVLD 479

Query: 695  EGHTLGSSL-NLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQ 753
            E H + +   +    LQ    L A NR  LTGTP  N    +L  L     FL+    G 
Sbjct: 480  EAHRIKNDQSSEGKALQ---FLKALNRLDLTGTPLENR-LGELWSLLQE--FLNPGLLGT 533

Query: 754  NQKAWDGGILRPFEAE--------MEEGRSRLLQLLHRCMISARKTD---LQTIPLCIKE 802
            +   +     +P +AE         E G   L +LL   ++   K D   L+ +P  I++
Sbjct: 534  SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEK 593

Query: 803  VTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCC 862
            V     +EE    Y  L+                                          
Sbjct: 594  VLECELSEEQRELYEALL------------------------------------------ 611

Query: 863  VAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDS 922
                    +  E  Q+ ++ L +   D         + N+L     LR I     +  + 
Sbjct: 612  --------EGAEKNQQLLEDLEKADSDENRIG--DSELNILALLTRLRQICNHPALVDEG 661

Query: 923  EKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRP 982
                      L       +L   E+      + + LI+L             L  +L   
Sbjct: 662  ----------LEATFDRIVLLLRED-KDFDYLKKPLIQLSK------GKLQALD-ELLLD 703

Query: 983  NLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS 1042
             L        KV+IFSQF   + ++E  L   GIK+  +     +  + + +D F  D  
Sbjct: 704  KLLEEG-HYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEE 762

Query: 1043 CLALLMDGSA-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
                L+   A  LGL+L+    V L +P W+ ++E Q I RAHR+G  RP+ V  L  RG
Sbjct: 763  EKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822

Query: 1102 TVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDF 1142
            T+EE++LE  +        L + L+  E E   S  ++ D 
Sbjct: 823  TIEEKILELQEKKQE----LLDSLIDAEGEKELSKLSIEDL 859

Length = 866
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1158
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0387 923 consensus Transcription-coupled repair protein CSB 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG1015 1567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
PRK13766 773 Hef nuclease; Provisional 99.96
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.89
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.89
PHA02558501 uvsW UvsW helicase; Provisional 99.87
KOG1123776 consensus RNA polymerase II transcription initiati 99.85
PTZ00110545 helicase; Provisional 99.77
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.77
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.76
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.76
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.76
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.76
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 99.76
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.75
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.73
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.72
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.7
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.7
PTZ00424401 helicase 45; Provisional 99.69
KOG0354 746 consensus DEAD-box like helicase [General function 99.68
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.66
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.65
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.64
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.64
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.62
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.62
PRK10689 1147 transcription-repair coupling factor; Provisional 99.6
PRK13767 876 ATP-dependent helicase; Provisional 99.56
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.53
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.52
PRK02362 737 ski2-like helicase; Provisional 99.51
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.51
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.48
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.48
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.48
PRK01172 674 ski2-like helicase; Provisional 99.48
KOG0387923 consensus Transcription-coupled repair protein CSB 99.47
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.45
KOG4439901 consensus RNA polymerase II transcription terminat 99.43
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.42
PRK00254 720 ski2-like helicase; Provisional 99.41
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 99.4
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.37
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.35
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.35
KOG1002791 consensus Nucleotide excision repair protein RAD16 99.33
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.33
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.32
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.32
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.32
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.31
smart0049082 HELICc helicase superfamily c-terminal domain. 99.31
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.31
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.28
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.28
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.28
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 99.27
PRK05580679 primosome assembly protein PriA; Validated 99.27
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.26
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 99.25
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.24
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.24
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 99.19
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 99.18
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 99.17
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.15
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.13
PHA02653 675 RNA helicase NPH-II; Provisional 99.13
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.12
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 99.11
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.1
KOG4284 980 consensus DEAD box protein [Transcription] 99.09
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.09
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.06
KOG0338 691 consensus ATP-dependent RNA helicase [RNA processi 99.05
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.05
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.04
KOG0345 567 consensus ATP-dependent RNA helicase [RNA processi 99.03
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.02
smart00487201 DEXDc DEAD-like helicases superfamily. 99.02
PRK09401 1176 reverse gyrase; Reviewed 99.01
KOG0347731 consensus RNA helicase [RNA processing and modific 99.0
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.0
COG4096 875 HsdR Type I site-specific restriction-modification 98.99
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 98.99
COG1204 766 Superfamily II helicase [General function predicti 98.99
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 98.97
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 98.96
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 98.94
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.93
PRK12904 830 preprotein translocase subunit SecA; Reviewed 98.83
KOG03841373 consensus Chromodomain-helicase DNA-binding protei 98.82
COG1205 851 Distinct helicase family with a unique C-terminal 98.8
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 98.79
PRK14701 1638 reverse gyrase; Provisional 98.79
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 98.79
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 98.78
PRK09694 878 helicase Cas3; Provisional 98.77
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 98.77
KOG0346 569 consensus RNA helicase [RNA processing and modific 98.74
PRK13107 908 preprotein translocase subunit SecA; Reviewed 98.73
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.66
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 98.64
COG4889 1518 Predicted helicase [General function prediction on 98.64
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 98.59
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 98.56
COG1202 830 Superfamily II helicase, archaea-specific [General 98.55
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 98.54
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 98.51
COG0556663 UvrB Helicase subunit of the DNA excision repair c 98.43
KOG0334 997 consensus RNA helicase [RNA processing and modific 98.41
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 98.39
PRK12326 764 preprotein translocase subunit SecA; Reviewed 98.37
PRK05298652 excinuclease ABC subunit B; Provisional 98.34
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 98.32
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 98.31
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 98.31
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 98.29
PRK04914956 ATP-dependent helicase HepA; Validated 98.24
COG1203 733 CRISPR-associated helicase Cas3 [Defense mechanism 98.22
KOG0327397 consensus Translation initiation factor 4F, helica 98.17
PF13871278 Helicase_C_4: Helicase_C-like 98.16
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.16
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 98.13
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.12
PF11496297 HDA2-3: Class II histone deacetylase complex subun 98.1
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 98.1
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 98.01
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 97.99
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 97.99
COG4098441 comFA Superfamily II DNA/RNA helicase required for 97.93
KOG1001674 consensus Helicase-like transcription factor HLTF/ 97.91
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 97.79
COG0610 962 Type I site-specific restriction-modification syst 97.75
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 97.7
KOG0953 700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 97.7
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.69
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 97.56
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 97.53
KOG0383696 consensus Predicted helicase [General function pre 97.33
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 97.25
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 97.2
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 97.18
CHL00122 870 secA preprotein translocase subunit SecA; Validate 96.8
KOG0337 529 consensus ATP-dependent RNA helicase [RNA processi 96.48
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 96.07
KOG0352 641 consensus ATP-dependent DNA helicase [Replication, 96.01
KOG02981394 consensus DEAD box-containing helicase-like transc 95.98
PRK15483 986 type III restriction-modification system StyLTI en 95.6
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 94.88
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 94.36
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 94.04
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 93.9
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 93.54
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 93.12
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 92.61
smart00492141 HELICc3 helicase superfamily c-terminal domain. 92.21
PF04851184 ResIII: Type III restriction enzyme, res subunit; 92.16
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 92.01
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 91.85
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 91.0
KOG0353 695 consensus ATP-dependent DNA helicase [General func 90.87
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 90.38
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 90.07
PRK13766773 Hef nuclease; Provisional 89.82
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 89.69
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 89.67
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 89.62
smart00491142 HELICc2 helicase superfamily c-terminal domain. 89.33
PRK14873665 primosome assembly protein PriA; Provisional 89.22
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 88.86
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 88.8
smart00487201 DEXDc DEAD-like helicases superfamily. 88.68
COG3587 985 Restriction endonuclease [Defense mechanisms] 88.61
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 88.61
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 88.54
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 88.48
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 87.81
KOG1803649 consensus DNA helicase [Replication, recombination 87.74
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 87.4
KOG0922 674 consensus DEAH-box RNA helicase [RNA processing an 85.9
smart00488289 DEXDc2 DEAD-like helicases superfamily. 85.19
smart00489289 DEXDc3 DEAD-like helicases superfamily. 85.19
PHA02558501 uvsW UvsW helicase; Provisional 84.73
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 83.6
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 83.07
PRK04296190 thymidine kinase; Provisional 82.99
PRK10536262 hypothetical protein; Provisional 82.62
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 81.79
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 81.71
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 81.26
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 80.09
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-82  Score=730.25  Aligned_cols=442  Identities=21%  Similarity=0.357  Sum_probs=377.4

Q ss_pred             ccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--------cCCEEEEECcccHHHHHHH
Q 001095          560 GFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--------SRATLIVVPSYLVDHWKTQ  631 (1158)
Q Consensus       560 ~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--------s~~tLIVvP~sLl~qW~~E  631 (1158)
                      +-+++||..|+.|.+      .+|.++.+|||||+    ||||||+|+|+++.        .||.||+||.|++.||.+|
T Consensus       166 g~lr~YQveGlnWLi------~l~engingILaDE----MGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~E  235 (971)
T KOG0385|consen  166 GELRDYQLEGLNWLI------SLYENGINGILADE----MGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNE  235 (971)
T ss_pred             CccchhhhccHHHHH------HHHhcCcccEeehh----cccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHH
Confidence            448999999996644      46889999999996    99999999999863        4899999999999999999


Q ss_pred             HHhhcCCCCeEEEEecCCCCcccc-----cccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHH
Q 001095          632 IQQHVRPGQLHLFVWTDHKKPSAH-----SLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLT  706 (1158)
Q Consensus       632 i~k~~~~~~l~v~v~~g~~~~~~~-----~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t  706 (1158)
                      |.+|+|.  +++++|+|.+..+..     -....+||+||||++..     ++.+.|..+.|.++|+||||+|||.++  
T Consensus       236 f~rf~P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i-----~dk~~lk~~~W~ylvIDEaHRiKN~~s--  306 (971)
T KOG0385|consen  236 FKRFTPS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAI-----KDKSFLKKFNWRYLVIDEAHRIKNEKS--  306 (971)
T ss_pred             HHHhCCC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHH-----hhHHHHhcCCceEEEechhhhhcchhh--
Confidence            9999987  999999998654322     12348999999999998     558999999999999999999999874  


Q ss_pred             HHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHh
Q 001095          707 NKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMI  786 (1158)
Q Consensus       707 ~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~ml  786 (1158)
                      ...+.++.+.+.+|++|||||+||+    +.|||+||+||-|++|++ ...|..+|......++.+...+|+.+|++|++
T Consensus       307 ~L~~~lr~f~~~nrLLlTGTPLQNN----L~ELWaLLnFllPdiF~~-~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL  381 (971)
T KOG0385|consen  307 KLSKILREFKTDNRLLLTGTPLQNN----LHELWALLNFLLPDIFNS-AEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL  381 (971)
T ss_pred             HHHHHHHHhcccceeEeeCCccccc----HHHHHHHHHhhchhhccC-HHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence            4456888999999999999999999    999999999999999996 78899998877766777788999999999999


Q ss_pred             hhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccC
Q 001095          787 SARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAG  865 (1158)
Q Consensus       787 RR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~  865 (1158)
                      ||.|.++. .|||+.+.++++.||+.|+++|..++..-...+.     +.       +.........+++.||++|+||.
T Consensus       382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n-----~~-------~~~~k~kL~NI~mQLRKccnHPY  449 (971)
T KOG0385|consen  382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALN-----GE-------GKGEKTKLQNIMMQLRKCCNHPY  449 (971)
T ss_pred             HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhc-----cc-------ccchhhHHHHHHHHHHHhcCCcc
Confidence            99999985 8999999999999999999999987653211110     00       11123455678999999999998


Q ss_pred             CccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCC
Q 001095          866 HIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRP  945 (1158)
Q Consensus       866 ~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~  945 (1158)
                      ++...                                                                           
T Consensus       450 LF~g~---------------------------------------------------------------------------  454 (971)
T KOG0385|consen  450 LFDGA---------------------------------------------------------------------------  454 (971)
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            65321                                                                           


Q ss_pred             CCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001095          946 ENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM 1025 (1158)
Q Consensus       946 ~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t 1025 (1158)
                       .+.+.+....+++        ..+++..++++|+..    ..+.|+|||||||++.+||+|++++.-.|+.|++|||+|
T Consensus       455 -ePg~pyttdehLv--------~nSGKm~vLDkLL~~----Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt  521 (971)
T KOG0385|consen  455 -EPGPPYTTDEHLV--------TNSGKMLVLDKLLPK----LKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGST  521 (971)
T ss_pred             -CCCCCCCcchHHH--------hcCcceehHHHHHHH----HHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCC
Confidence             1223334445555        235566666666544    378999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhccCC--CeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCH
Q 001095         1026 HSSNKIKSLDMFRHDA--SCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus      1026 ~~~~R~~~i~~F~~~~--~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TI 1103 (1158)
                      +.++|..+|+.||.++  .+.+||+|+|||.||||++|++||+||.+|||..+.||++|||||||+|+|.||||++++||
T Consensus       522 ~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV  601 (971)
T KOG0385|consen  522 SHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV  601 (971)
T ss_pred             CcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence            9999999999999876  35666667999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHhhh
Q 001095         1104 EEQMLEFLQDTDRCRRLLKEEL 1125 (1158)
Q Consensus      1104 EE~Il~~l~~K~~l~~~v~~~~ 1125 (1158)
                      ||+|+++...|+++.++|++..
T Consensus       602 Ee~IveRA~~KL~Ld~~VIq~g  623 (971)
T KOG0385|consen  602 EEKIVERAAAKLRLDKLVIQQG  623 (971)
T ss_pred             HHHHHHHHHHHhchhhhhhccC
Confidence            9999999999999999998876

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1158
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 5e-09
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 1e-06
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 2e-06
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 4e-06
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 3e-05
2l7p_A100 Ashh2 A Cw Domain Length = 100 3e-04
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure 
Iteration: 1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 993  KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDGS 1051
            +V+IFSQ +  + ++   L++ GI F  +   + S+ +  S+D F   D++    L+   
Sbjct: 574  RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633
Query: 1052 AS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
            A  LG++L     V + +  W+   + Q ++RAHR+G    + V  L  + TVEE++LE
Sbjct: 634  AGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 692
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|2L7P|A Chain A, Ashh2 A Cw Domain Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1158
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 9e-18
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 1e-17
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 9e-16
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-13
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-06
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 3e-13
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 3e-07
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-07
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 8e-04
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 2e-07
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-05
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 9e-06
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 4e-04
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 7e-04
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 Back     alignment and structure
 Score = 78.7 bits (193), Expect = 9e-18
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 414 VSNSCERPEKVSTDHFACNETWVQCDACHKWRKLLDASVA--DATAAWFCSMNSDPTHQS 471
           V +     +    D ++    WV+CD C KWR++  + V   D ++ W C  NSD     
Sbjct: 7   VGSEFMVVDVTIEDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFAD 66

Query: 472 CGDPEEAWDN 481
           C   +E  + 
Sbjct: 67  CSKSQEMSNE 76
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1158
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 100.0
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
4a2w_A 936 RIG-I, retinoic acid inducible protein I; hydrolas 99.96
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 99.96
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 99.96
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 99.96
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.95
4gl2_A 699 Interferon-induced helicase C domain-containing P; 99.94
2ykg_A 696 Probable ATP-dependent RNA helicase DDX58; hydrola 99.94
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 99.93
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.92
3h1t_A590 Type I site-specific restriction-modification syst 99.91
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.91
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.9
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.9
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.89
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.89
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.87
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.87
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.86
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.86
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.85
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 99.83
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.8
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 99.79
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.79
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.78
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.77
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.77
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.74
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.74
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.71
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.68
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.67
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 99.67
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.66
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.6
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.58
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 99.57
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.56
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.55
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.55
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.54
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 99.52
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.51
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.5
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.47
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.2
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.45
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.43
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.4
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.38
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.37
3rc3_A 677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.35
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.34
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.3
3i32_A 300 Heat resistant RNA dependent ATPase; RNA helicase, 99.3
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.29
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.27
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.27
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.26
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.25
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 99.22
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.18
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.16
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.15
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 99.15
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.14
3jux_A 822 Protein translocase subunit SECA; protein transloc 99.05
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.03
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.03
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.01
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 98.99
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 98.98
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 98.97
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 98.95
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 98.92
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 98.89
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 98.87
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 98.87
3bor_A237 Human initiation factor 4A-II; translation initiat 98.84
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 98.81
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 98.8
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 98.7
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 98.69
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 98.67
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 98.62
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 98.55
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 98.2
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 98.19
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 98.06
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 97.5
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 97.39
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 97.3
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 97.13
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 96.83
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 96.71
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 96.23
4gl2_A699 Interferon-induced helicase C domain-containing P; 95.75
3h1t_A590 Type I site-specific restriction-modification syst 95.66
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 95.6
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 95.57
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 95.34
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 94.95
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 94.72
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 94.53
3b6e_A216 Interferon-induced helicase C domain-containing P; 94.28
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 94.1
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 93.88
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 93.8
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 93.53
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 92.76
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 92.74
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 92.1
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 91.79
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 91.69
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 91.4
1wee_A72 PHD finger family protein; structural genomics, PH 91.34
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 91.23
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 91.22
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 90.91
1we9_A64 PHD finger family protein; structural genomics, PH 89.85
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 89.66
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 89.58
3o70_A68 PHD finger protein 13; PHF13, structural genomics 89.22
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 88.7
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 88.37
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 88.18
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 88.01
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 87.94
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 87.89
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 87.6
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 86.89
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 86.55
4gut_A776 Lysine-specific histone demethylase 1B; histone de 86.32
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 86.21
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 86.09
1wem_A76 Death associated transcription factor 1; structura 85.96
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 85.92
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 85.72
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 85.06
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 84.8
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 84.62
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 84.59
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 84.55
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 82.65
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 81.81
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 81.4
3bor_A237 Human initiation factor 4A-II; translation initiat 81.04
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 80.95
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 80.94
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=5.1e-65  Score=650.55  Aligned_cols=448  Identities=19%  Similarity=0.298  Sum_probs=334.3

Q ss_pred             cchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--------cCCEEEEECcccHHHHHHHH
Q 001095          561 FHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--------SRATLIVVPSYLVDHWKTQI  632 (1158)
Q Consensus       561 ~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--------s~~tLIVvP~sLl~qW~~Ei  632 (1158)
                      .+++||..|+.+...      .+.++.+|||||    +||||||+|+++++.        .+|+|||||.+|+.||.+||
T Consensus       236 ~Lr~yQ~egv~~l~~------~~~~~~~~ILad----emGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~  305 (800)
T 3mwy_W          236 ELRDFQLTGINWMAF------LWSKGDNGILAD----EMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTF  305 (800)
T ss_dssp             CCCTHHHHHHHHHHH------HHTTTCCEEECC----CTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH------HhhcCCCEEEEe----CCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHH
Confidence            366777777644331      234567899999    499999999999864        47999999999999999999


Q ss_pred             HhhcCCCCeEEEEecCCCCcccc--------------cccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccc
Q 001095          633 QQHVRPGQLHLFVWTDHKKPSAH--------------SLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHT  698 (1158)
Q Consensus       633 ~k~~~~~~l~v~v~~g~~~~~~~--------------~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~  698 (1158)
                      .+|++.  +++.+|+|.......              .....+||+||||+++.+.     ...|..+.|++||+||||+
T Consensus       306 ~~~~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~-----~~~l~~~~w~~vIvDEaH~  378 (800)
T 3mwy_W          306 EKWAPD--LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD-----RAELGSIKWQFMAVDEAHR  378 (800)
T ss_dssp             HHHSTT--CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT-----HHHHHTSEEEEEEETTGGG
T ss_pred             HHHCCC--ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh-----HHHHhcCCcceeehhhhhh
Confidence            999975  888888886542210              1234789999999999844     4567788999999999999


Q ss_pred             cCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHH
Q 001095          699 LGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLL  778 (1158)
Q Consensus       699 ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~  778 (1158)
                      +||..+  ..++++..+++.+||+|||||++|+    +.|||++++||.|+.|+. ...|...   ............|+
T Consensus       379 lkn~~s--~~~~~l~~l~~~~rl~LTgTPiqN~----l~el~~ll~fL~p~~~~~-~~~~~~~---~~~~~~~~~~~~L~  448 (800)
T 3mwy_W          379 LKNAES--SLYESLNSFKVANRMLITGTPLQNN----IKELAALVNFLMPGRFTI-DQEIDFE---NQDEEQEEYIHDLH  448 (800)
T ss_dssp             GCCSSS--HHHHHHTTSEEEEEEEECSCCCSSC----SHHHHHHHHHHCSCCC-------------CCTTHHHHHHHHHH
T ss_pred             hcCchh--HHHHHHHHhhhccEEEeeCCcCCCC----HHHHHHHHHHhCccccCc-hhhhccc---ccchhHHHHHHHHH
Confidence            999875  4566888999999999999999999    999999999999999985 3333211   11122344567899


Q ss_pred             HHHHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHH
Q 001095          779 QLLHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNL  857 (1158)
Q Consensus       779 ~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~L  857 (1158)
                      .++.++|+||+|+++. .||++.+.++.++||+.|+.+|+.+.......+...            ........+..+..|
T Consensus       449 ~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~------------~~~~~~~~l~~l~~L  516 (800)
T 3mwy_W          449 RRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAG------------AKGGHFSLLNIMNEL  516 (800)
T ss_dssp             HTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------------CTHHHHHHHH
T ss_pred             HHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc------------cccchhhHHHHHHHH
Confidence            9999999999999986 699999999999999999999998876422211110            011123456778999


Q ss_pred             HHHccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccC
Q 001095          858 RLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQ  937 (1158)
Q Consensus       858 R~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~  937 (1158)
                      |++|+||.++....         +..... ...                                               
T Consensus       517 rk~~~hp~l~~~~~---------~~~~~~-~~~-----------------------------------------------  539 (800)
T 3mwy_W          517 KKASNHPYLFDNAE---------ERVLQK-FGD-----------------------------------------------  539 (800)
T ss_dssp             HHHHHCGGGSSSHH---------HHHCCC-C-------------------------------------------------
T ss_pred             HHHhcChhhhcchH---------HHHHHh-ccc-----------------------------------------------
Confidence            99999997653210         000000 000                                               


Q ss_pred             CccccCCCCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCe
Q 001095          938 SPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIK 1017 (1158)
Q Consensus       938 ~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~ 1017 (1158)
                                  .. .......+..    ...+++..++..++..    ....++|+||||||+.++++|+++|...|++
T Consensus       540 ------------~~-~~~~~~~~~l----~~~s~K~~~L~~lL~~----~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~  598 (800)
T 3mwy_W          540 ------------GK-MTRENVLRGL----IMSSGKMVLLDQLLTR----LKKDGHRVLIFSQMVRMLDILGDYLSIKGIN  598 (800)
T ss_dssp             ---------------CCSHHHHHHH----HHTCHHHHHHHHHHHH----HTTTTCCEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             ------------cc-ccHHHHHHHh----hhcChHHHHHHHHHHH----HhhCCCeEEEEechHHHHHHHHHHHHhCCCC
Confidence                        00 0000000000    0112333333333322    2457899999999999999999999999999


Q ss_pred             EEEEeCCCCHHHHHHHHHHhccCCC--eeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEE
Q 001095         1018 FAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus      1018 ~~~ldG~t~~~~R~~~i~~F~~~~~--~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
                      +.+++|+++..+|++++++|++++.  +.+|++|++||+||||+.|++||+|||+|||+.+.||+||+||+||+++|+||
T Consensus       599 ~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy  678 (800)
T 3mwy_W          599 FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY  678 (800)
T ss_dssp             CEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence            9999999999999999999998654  35677779999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHhHHHHHHHHhhh
Q 001095         1096 TLAMRGTVEEQMLEFLQDTDRCRRLLKEEL 1125 (1158)
Q Consensus      1096 rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~ 1125 (1158)
                      +|+++|||||+|++++..|..+.+.+.+..
T Consensus       679 rlv~~~TiEe~i~~~~~~K~~l~~~vi~~~  708 (800)
T 3mwy_W          679 RLVSKDTVEEEVLERARKKMILEYAIISLG  708 (800)
T ss_dssp             EEEETTSHHHHHHHHHHHHTTSCC------
T ss_pred             EEecCCCHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999998877766544
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1158
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 1e-11
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 2e-07
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 2e-07
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 3e-07
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 6e-04
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 0.001
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 0.003
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score = 65.0 bits (157), Expect = 1e-11
 Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 2/130 (1%)

Query: 985  ESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC- 1043
             +     DKV++ S + + + + E+        +  +   M    + K ++ F + +S  
Sbjct: 112  MTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPE 171

Query: 1044 -LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
             + +L   +   GL+L    R+ + +P W+ + +EQ ++R  R G  +  ++  L   GT
Sbjct: 172  FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 231

Query: 1103 VEEQMLEFLQ 1112
            +EE++L+   
Sbjct: 232  IEEKILQRQA 241
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1158
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.79
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.68
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.63
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.63
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.63
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.57
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.56
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.52
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.5
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.5
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.37
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.34
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.34
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.33
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.25
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.22
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.18
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.97
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 98.95
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 98.92
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 98.82
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 98.65
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 98.54
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.51
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.49
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 98.47
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 98.39
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.26
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.02
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 97.98
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 97.83
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 97.79
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 97.72
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 97.68
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 97.67
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 97.63
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 97.62
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 97.5
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 97.36
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 97.22
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 97.01
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 96.83
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 96.48
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 94.52
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 94.42
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 91.07
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 89.2
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 88.51
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 88.1
d1wema_76 Death associated transcription factor 1, Datf1 (DI 84.86
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 84.33
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 83.91
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 83.32
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 81.34
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.6e-37  Score=353.91  Aligned_cols=136  Identities=19%  Similarity=0.367  Sum_probs=124.3

Q ss_pred             cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCC-eeEEEE-eCccccccCcccCCEEE
Q 001095          988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS-CLALLM-DGSASLGLDLSFVTRVF 1065 (1158)
Q Consensus       988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~-~~VLL~-s~agg~GLNLt~An~VI 1065 (1158)
                      ..+++||||||+|+.++++|+++|...|+++.+++|+++.++|++++++||++.. ..|||+ +++||+||||+.|++||
T Consensus       115 ~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi  194 (346)
T d1z3ix1         115 TTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLV  194 (346)
T ss_dssp             HHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEE
T ss_pred             HhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEE
Confidence            4578999999999999999999999999999999999999999999999998654 345555 59999999999999999


Q ss_pred             EECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHh
Q 001095         1066 LMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKE 1123 (1158)
Q Consensus      1066 ~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~ 1123 (1158)
                      +|||+|||+.+.||+||+||+||+++|+||||+++|||||+|++++..|..+...+.+
T Consensus       195 ~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~  252 (346)
T d1z3ix1         195 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD  252 (346)
T ss_dssp             ECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCS
T ss_pred             EecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999765444443
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure