Citrus Sinensis ID: 001108
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1156 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.963 | 0.776 | 0.719 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.956 | 0.770 | 0.705 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.974 | 0.779 | 0.688 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.965 | 0.784 | 0.684 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.967 | 0.776 | 0.694 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.973 | 0.768 | 0.688 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.973 | 0.775 | 0.682 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.971 | 0.770 | 0.686 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.957 | 0.754 | 0.688 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.971 | 0.770 | 0.685 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1727 bits (4472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 822/1143 (71%), Positives = 954/1143 (83%), Gaps = 29/1143 (2%)
Query: 13 SLR-RSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEV 71
SLR S S W N + FSRSSR+EDDEEALKWAALEKLPT++RLRKG+L S+G A EV
Sbjct: 21 SLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEV 80
Query: 72 DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAF 131
D+ +LG QER+ L+++LVKV D DNE+FLLKLKNRIDRVGIDLP +EVRYEHLN++A+A+
Sbjct: 81 DINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAY 140
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191
+ S +LP+F+ F TN E +LN L I+ S+KR LTILKD+SG+IKP R+TLLLGPPSSGK
Sbjct: 141 VGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGK 200
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLDP LKV+G V+YNGH++ EFVPQRTAAYISQHD HIGEMTVRETL FSA
Sbjct: 201 TTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSA 260
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311
RCQGVG+R+EML EL+RREKAA IKPD DID+YMKA ATEGQEANV+TDY LK+LGLD+C
Sbjct: 261 RCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDIC 320
Query: 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
ADTMVGD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN LRQ++
Sbjct: 321 ADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQ 380
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVAD 431
I GTAVISLLQPAPETY+LFDDIILLSDG IVYQGPR+ VLEFF SMGF+CP+RKGVAD
Sbjct: 381 ILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVAD 440
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTS+KDQ+QYW+ + +PYRF+T +EFAEA+QSFHVG+K+ DEL TPFDK+K H AA
Sbjct: 441 FLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAA 500
Query: 492 LTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551
LT E YG+GK+ELLK RELLLMKRNSFVY+FK Q+ +A++ MTLF RT+M +DT
Sbjct: 501 LTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTT 560
Query: 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
DGGI+AGA FF + M+ FNG SE++MTI KLPVFYKQRD FFP WAYAIPSWILKIPV
Sbjct: 561 DDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPV 620
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
+ +EV +WV L+YYV+G+D N RF KQ+ LL+ VNQMAS +FRFI GR M VA+TFG
Sbjct: 621 TLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFG 680
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
SFALL+ +LGGF+LSR+D+K WW W YW SP+ Y+ N+I+ NEF G W +ET
Sbjct: 681 SFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNET 740
Query: 732 LGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791
LG V+KSRGFF YWYW+G+GAL GF ++ NF Y+LAL +L+PF+KP+AV+ E+ E+
Sbjct: 741 LGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENA 800
Query: 792 EQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPF 851
E G S+ T + D I Q++ KKGMVLPF
Sbjct: 801 EN-------------GEVSSQITSTDGGDSISESQNN---------------KKGMVLPF 832
Query: 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 911
EPHS+TFD+VVYSVDMP+EMK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLM
Sbjct: 833 EPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLM 892
Query: 912 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971
DVLAGRKTGGYI G I ISGYPKKQETFARISGYCEQNDIHSP+VT+YESL++SAWLRL
Sbjct: 893 DVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLP 952
Query: 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031
+VD +TRKMF+DEVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 953 QDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1012
Query: 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG
Sbjct: 1013 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1072
Query: 1092 PLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRY 1151
PLGRHSCHLI YFE+ PGV KIK+GYNPATWMLEV+A++QE+ LGIDFTE YK SDLYR
Sbjct: 1073 PLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRR 1132
Query: 1152 KQS 1154
++
Sbjct: 1133 NKA 1135
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1679 bits (4347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 804/1139 (70%), Positives = 949/1139 (83%), Gaps = 33/1139 (2%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNL 76
S S W N FSRS+R+EDDEEALKWAALEKLPTY+RLRKGIL S+G A EVDV +
Sbjct: 30 SNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAAAEVDVDDS 89
Query: 77 GLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNA 136
G+ ER+ L+++LVKV D DNE+FLLKLKNRIDRVGID P +EVR+EHLN++A+A++ S A
Sbjct: 90 GVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDADAYVGSRA 149
Query: 137 LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196
LP+F F +N E +L+ + I+PSKKR +TILKDVSG++KP R+TLLLGPP SGKTTLLL
Sbjct: 150 LPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPGSGKTTLLL 209
Query: 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
ALAGKLD LKV+G VTYNGH++ EFVPQRTAAYISQHD HIGEMTVRETL FSARCQGV
Sbjct: 210 ALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 269
Query: 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316
G+RYEML EL+RREKAA IKPD DID++MKA +TEGQEA V+TDY LK+LGLD+CADTMV
Sbjct: 270 GSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGLDICADTMV 329
Query: 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
GD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN L+Q++ I GT
Sbjct: 330 GDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMKGT 389
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
A+ISLLQPAPETY+LFDDIILLSDG IVY+GPRE VLEFF SMGF+CP+RKG ADFLQEV
Sbjct: 390 ALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQEV 449
Query: 437 TSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTET 496
TS+KDQ+QYW +++PYRF+T +EFAEA+QSFHVG+K+SDEL+T FDKSKSH AALTT+
Sbjct: 450 TSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTTQK 509
Query: 497 YGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGI 556
YG+GKR+LLK RELLLM+RNSFVY+FK Q+ +A++ MT+F RTKM +D+ DGGI
Sbjct: 510 YGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDGGI 569
Query: 557 FAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEV 616
++GA FF + M+ FNG SE+ MT+ KLPVFYKQRDF F+P WAYAIPSWILKIPV+F EV
Sbjct: 570 YSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFAEV 629
Query: 617 AVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALL 676
+WVFL+YYV+G+D N GRFFKQ+ LLL VNQMASALFRFIA GR M VA+TFG+FALL
Sbjct: 630 GMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFALL 689
Query: 677 VLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQV 736
+ +LGGFIL+R D+K WW W YW SPL Y+ NAI+ NEF G WK +E LG V
Sbjct: 690 LQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAV 749
Query: 737 LKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDR 796
+++RGFF YWYW+G+GAL GF+++ N AY++AL +L+PF+KP+A I++E E+NE
Sbjct: 750 VRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNES--- 806
Query: 797 IGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAE-ASRPKKKGMVLPFEPHS 855
+SS Q S E + AS KKKGMVLPF+PHS
Sbjct: 807 -----------------------------ESSPQITSTQEGDSASENKKKGMVLPFDPHS 837
Query: 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915
+TFDEVVYSVDMP EM+ G +++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLA
Sbjct: 838 ITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLA 897
Query: 916 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975
GRKTGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP+VT++ESL++SAWLRL +V+
Sbjct: 898 GRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVN 957
Query: 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035
E R MF++EVM+LVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 958 EEKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1017
Query: 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1095
SGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR
Sbjct: 1018 SGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1077
Query: 1096 HSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRYKQS 1154
SCHLI YFE+IPGV KI +GYNPATWMLEV+A+SQE+ALG+DFT+ YK+SDLYR ++
Sbjct: 1078 QSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKA 1136
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1660 bits (4298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/1146 (68%), Positives = 947/1146 (82%), Gaps = 20/1146 (1%)
Query: 13 SLRRSASRWNTNS--IGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANE 70
S+RR+AS W S AF RS REEDDEEALKWAA+EKLPTY+R+RKGILT G E
Sbjct: 15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEE 72
Query: 71 VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA 130
VD+ LGLQER+ LI++LV+ + DNERFLLKL++R++RVGID P +EVR+E+L+++AEA
Sbjct: 73 VDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEA 132
Query: 131 FLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSG 190
++ + +P+F F++N D+L+ +RI+ S KR ++IL D+SG+I+PGR++LLLGPP SG
Sbjct: 133 YVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSG 192
Query: 191 KTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250
KT+LLLALAGKLD TLKVSG VTYNGHDMDEFVPQRT+AYI QHD HIGEMTVRETLAFS
Sbjct: 193 KTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFS 252
Query: 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV 310
ARCQGVGTRY+MLTEL+RREK A IKPDPDIDVYMKAI+ EGQE+ V+TDY LK+LGL++
Sbjct: 253 ARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEI 311
Query: 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370
CADTMVGD MIRGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ++
Sbjct: 312 CADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSV 371
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVA 430
HI GTA+I+LLQPAPETYDLFDDI+LLS+GQIVYQGPRE +LEFF +MGF+CP+RKGVA
Sbjct: 372 HILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVA 431
Query: 431 DFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRA 490
DFLQEVTSRKDQ QYW +++PYR+++V +F+EAF+ FHVG+ + ELR PFD++++H A
Sbjct: 432 DFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPA 491
Query: 491 ALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDT 550
ALTT YG+ K EL KA SRE LLMKRNSFVYIFK++Q+ + + MT+FLRTKMH+ +
Sbjct: 492 ALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRS 551
Query: 551 VTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIP 610
V DG IF GA F + FNGF+E++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP
Sbjct: 552 VEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIP 611
Query: 611 VSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTF 670
+SFLE AVW+ ++YYV+G+D N RFF+ Y LL+ ++QMAS LFR +A GR MVVA+TF
Sbjct: 612 ISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTF 671
Query: 671 GSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DS 728
GSFA L+LL LGGF++SRE+IKKWW W YW SPL YAQNAI NEFLGHSW K S
Sbjct: 672 GSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQS 731
Query: 729 SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788
++TLGVQVLK RG F WYW+G+GAL G+++L N + L L +LDP K +AV++EE
Sbjct: 732 NDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEE 791
Query: 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMV 848
+ +R G NV+L TLG S ++ S + E + +K+GMV
Sbjct: 792 LREKHVNRTGENVELLTLGTDSQNS-------------PSDANAGRGEITGADTRKRGMV 838
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
LPF P S+TFD + YSVDMP+EMK +GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 839 LPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKT 898
Query: 909 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968
TLMDVLAGRKTGGYI G+I+ISGYPKKQETFARI+GYCEQNDIHSP VT+YESLL+SAWL
Sbjct: 899 TLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWL 958
Query: 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028
RL EVDSE RKMF++EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 959 RLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1018
Query: 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EI
Sbjct: 1019 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1078
Query: 1089 YVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDL 1148
YVGPLG +SCHLI+YFE I GV+KIKDGYNPATWMLEV+ +QE LGI+F E Y+ SDL
Sbjct: 1079 YVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDL 1138
Query: 1149 YRYKQS 1154
Y+ ++
Sbjct: 1139 YQRNKT 1144
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1652 bits (4279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/1153 (68%), Positives = 941/1153 (81%), Gaps = 37/1153 (3%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNS-IGAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
MEGT AS S+RR++S W +S FSRSSREEDDEEAL+WAALEKLPT++RLRKG
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 ILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKV 117
ILT S G NE+D+ LG Q+ ++L+++L+KV D ++E+ L KLK RIDRVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKP 177
EVR++HL VEAE + ALP+F+ F +N + LN L ++P++K+ TIL DVSG++KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237
GR+ LLLGPPSSGKTTLLLALAGKLD LK +G VTYNGH M+EFVPQRTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVG+RY+MLTELARREK A IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCADTMVGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
TT+QIVN LR +HI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFF
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477
+MGF+CP RKGVADFLQEVTS+KDQ QYWA +++PYRF+ V+EFAEAFQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 537
L PFDK+KSH AALTT+ YGVG +EL+K + SRE LLMKRNSFVY FK Q+ +A +
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+M K T DG ++ GA FF + M+ FNG SE+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFI 657
W Y++P W+LKIP+SF+E A+ F++YYV+G+D N GR FKQY LL+ +NQMASALF+ +
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717
A GRNM+VANTFG+FA+LV +LGG +LSR+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPF 777
GHSW + ++SSETLGV LKSRGF H YWYW+G GAL GFV+L NF +TLALTFL+
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 778 EKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEA 837
KP+AVI EE S+E + S++S + EA
Sbjct: 780 GKPQAVIAEEPASDET-------------------------------ELQSARSEGVVEA 808
Query: 838 EASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897
A+ KK+GMVLPFEPHS+TFD VVYSVDMP+EM QG ED+LVLL GV+GAFRPGVLT
Sbjct: 809 GAN--KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLT 866
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
ALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VT
Sbjct: 867 ALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVT 926
Query: 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1017
+YESL++SAWLRL EVD RK+FI+EVMELVEL PLRQ+LVGLPG SGLSTEQRKRLT
Sbjct: 927 VYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLT 986
Query: 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE
Sbjct: 987 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1046
Query: 1078 LFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGI 1137
LFL+KRGG+EIYVGPLG S HLI+YFE+I G+ KI +GYNPATWMLEVS SQE ALG+
Sbjct: 1047 LFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGV 1106
Query: 1138 DFTEHYKRSDLYR 1150
DF + YK S+LY+
Sbjct: 1107 DFAQVYKNSELYK 1119
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1635 bits (4234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 791/1139 (69%), Positives = 935/1139 (82%), Gaps = 20/1139 (1%)
Query: 13 SLRRSASRWNTNSIG-AFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEV 71
SLRRS S W + S F RSSREEDDEEALKWAALEKLPTY+RLRKGI+T GE EV
Sbjct: 18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEV 77
Query: 72 DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAF 131
D+ LG QER+ L++KLV+ + DNERFLLKL+NR++RVGID P +EVR+EHLN+ AEAF
Sbjct: 78 DIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAF 137
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191
+ + +P+ + F+ N IL+ L ++PS KR ++IL DVSG+IKP R+TLLLGPP +GK
Sbjct: 138 VGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGK 197
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLD TLKV+G VTYNGH M EFVPQRT+AYISQHD HIGEMTVRETLAFS+
Sbjct: 198 TTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSS 257
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311
RCQGVGTRYEMLTEL+RREK A IKPDPD+DVYMKA+A EGQE+ V+TDY LK+LGLD+C
Sbjct: 258 RCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDIC 316
Query: 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
ADTMVGD MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN LRQ++H
Sbjct: 317 ADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVH 376
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVAD 431
I GTA+I+LLQPAPETYDLFDDI+LLSDGQIVYQGPRE VLEFF SMGF+CP+RKGVAD
Sbjct: 377 ILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVAD 436
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTSRKDQ+QYW + +PYRFV V EF+EAF+SFHVG K+ +EL TPFD+S++H AA
Sbjct: 437 FLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAA 496
Query: 492 LTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551
LTT YG+ K ELLKA I RE LLMKRNSFVYIFK++Q+ +A++ MT+F RTK+ ++ +
Sbjct: 497 LTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGL 556
Query: 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
D IF GA F + FNGF+E++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIP+
Sbjct: 557 EDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPI 616
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
SF+E VW+ ++YYV+G+D N R F+ Y LL+ ++Q+AS LFR +A GR+MVVA+TFG
Sbjct: 617 SFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFG 676
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
+FA LVLL LGGFI++RE IKK+W W YW SPL YAQNAI NEFLGHSW K + +T
Sbjct: 677 AFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQT 736
Query: 732 LGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791
LG + L++RG F + WYW+G+GAL G+++L NF + L L +LDP K + ++EE
Sbjct: 737 LGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQE 796
Query: 792 EQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPF 851
++ +R G NV+L+T G ++ T G + +IR + +KKGMVLPF
Sbjct: 797 KEANRTGANVELATRGSAA---TSDGGSVEIRKDGN---------------RKKGMVLPF 838
Query: 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 911
P S+TFD V YSVDMP+EMK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLM
Sbjct: 839 TPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLM 898
Query: 912 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971
DVLAGRKTGGYI G+I ISGYPK QETFARISGYCEQNDIHSP VT+YESLL+SAWLRL
Sbjct: 899 DVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLP 958
Query: 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031
EVD + RKMF+DEVM+LVELN LR SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 959 AEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFM 1018
Query: 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
DEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVG
Sbjct: 1019 DEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVG 1078
Query: 1092 PLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYR 1150
PLGR S HLI YFE+I GV+KIK+ YNPATWMLEV+ SQE LG++F E Y+ SDLY+
Sbjct: 1079 PLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYK 1137
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1617 bits (4187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 794/1154 (68%), Positives = 927/1154 (80%), Gaps = 29/1154 (2%)
Query: 17 SASRWNTNSIGAFSRSSRE------EDDEEALKWAALEKLPTYNRLRKGILTT------- 63
+AS W + G FSRS EDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 25 AASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 64 SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEH 123
VDV +LG QER+ L+++LV+V + DNERFLLKLK RIDRVGID+P +EVR+EH
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 124 LNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLL 183
L EAE + ++ LP+ + TN E N L I+P+KK+ + IL DVSG++KP R+TLL
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLL 204
Query: 184 LGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243
LGPP SGKTTLLLALAG+L +K SG VTYNGH M++FVPQRTAAYISQHD HIGEMTV
Sbjct: 205 LGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTV 264
Query: 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303
RETL+FSARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A EGQE N+ITDY L
Sbjct: 265 RETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYIL 324
Query: 304 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 363
K+LGLD+CADTMVGD+M+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 325 KILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Query: 364 NCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRC 423
LRQ IHI GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFF MGF+C
Sbjct: 385 KSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKC 444
Query: 424 PKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFD 483
P+RKGVADFLQEVTSRKDQ+QYW +KPYR+V V++FA AFQSFH G+ I++EL TPFD
Sbjct: 445 PERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFD 504
Query: 484 KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLR 543
KSK+H AALTT YGV ELLKANI RE LLMKRNSFVYIF+ Q+ V+ + MT+F R
Sbjct: 505 KSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFR 564
Query: 544 TKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIP 603
TKMH+D+VTDG IF GA FF++ M+ FNG SE+ +TI KLPVF+KQRD FFP W Y IP
Sbjct: 565 TKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIP 624
Query: 604 SWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663
SWILKIP+SF+EV +VF+SYYV+G+D +AGRFFKQY L+L +NQMA+ALFRF+ RN
Sbjct: 625 SWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARN 684
Query: 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKK 723
M+VAN FGSF LL+ + LGGFIL RE +KKWW W YW SP+ YAQNAI NEFLGHSW K
Sbjct: 685 MIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDK 744
Query: 724 FTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781
+ S+ETLGVQ L+SRG F WYW+G GAL GF++L N +TLALT+L P+ K +
Sbjct: 745 VLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQ 804
Query: 782 AVITEEIESNEQDDRIGGNV-QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEAS 840
++EE E E+ I GNV + T+ S+N + ++SS+ A+ S
Sbjct: 805 PSVSEE-ELKEKQANINGNVLDVDTMASSTNLAI-------VDNTETSSEI-----ADNS 851
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
+P ++GMVLPF P SLTFD + YSVDMP+EMK G++ED+L LL GVSG+FRPGVLTALM
Sbjct: 852 QPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALM 911
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFAR+SGYCEQNDIHSP VT+ E
Sbjct: 912 GVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSE 971
Query: 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1020
SLLFSAWLRL +VDS TRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAV
Sbjct: 972 SLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAV 1031
Query: 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 1032 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1091
Query: 1081 MKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFT 1140
MKRGG+EIYVGPLG S LI YFE I GV +IKDGYNPATWMLEVS SQE ALG+DF
Sbjct: 1092 MKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFC 1151
Query: 1141 EHYKRSDLYRYKQS 1154
+ Y++S+L++ ++
Sbjct: 1152 DIYRKSELFQRNKA 1165
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1603 bits (4151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/1150 (68%), Positives = 925/1150 (80%), Gaps = 25/1150 (2%)
Query: 13 SLRRSASRWNTNSIGAFSRSSR----EEDDEEALKWAALEKLPTYNRLRKGILTTSR--- 65
SLRR S W + FSRSS E+DDEEAL+WAALE+LPTY+R+R+GIL S
Sbjct: 10 SLRREGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 66 ---GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
GE EVDV LG +E + LI++LV+ D D+ERFLLKL+ R+DRVGID P +EVR+E
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
+L VEA+ + + LP+ + TN E I N L I+P+KK+ +T+L DVSG+IKP R+TL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPP SGKTTLLLALAGKLD LKVSG VTYNGH M EFVP+RTAAYISQHD HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVGTRYEMLTELARREKAA IKPD DID+YMKA A GQE++V+TDY
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADT+VG+EM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VN LRQ IHI GTAVISLLQPAPETY+LFDDIILLSDGQ+VYQGPRE VLEFF MGFR
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP RKGVADFLQEVTSRKDQ QYW +++PYRFV V++FA+AF+SFHVG+ I +EL PF
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
D+++SH AAL T YGV ++ELLKA I RELLLMKRN+F+YIFK + + +A++ MT F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT M D G I+ GA +FA+ V FNGF+E++MT+ KLPVF+KQRD FFP WAY I
Sbjct: 549 RTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
PSWIL+IP++FLEV V+VF++YYV+G+D + RFFKQY LLL +NQM+SALFRFIA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
+MVV++TFG +LL +LGGFIL+R D+KKWW W YW SPL+YAQNAI NEFLGHSW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
+ + TLGV VLKSRG F WYW+GLGAL G+ LL N YT+AL+ L PF A
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTD--DIRGQQSSSQSLSLAEAEAS 840
++E+ + + G V+ G + +R + I Q S S A++ AS
Sbjct: 788 SMSEDALKEKHANLTGEVVE-----GQKDTKSRKQELELSHIADQNSGINS---ADSSAS 839
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
R KGMVLPF P S++F++V YSVDMPE MK QG+ ED+L+LL GVSG+FRPGVLTALM
Sbjct: 840 R---KGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALM 896
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YE
Sbjct: 897 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYE 956
Query: 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1020
SL+FSAWLRL EVDSE RKMFI+EVM+LVEL LR +LVGLPGVSGLSTEQRKRLTIAV
Sbjct: 957 SLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAV 1016
Query: 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 1017 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1076
Query: 1081 MKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFT 1140
MKRGG+EIYVGP+G++S LI YFE I GV +IKDGYNPATWMLEV++++QE LG+DF+
Sbjct: 1077 MKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFS 1136
Query: 1141 EHYKRSDLYR 1150
E Y++S+LY+
Sbjct: 1137 EIYRQSELYQ 1146
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1602 bits (4149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/1151 (68%), Positives = 926/1151 (80%), Gaps = 28/1151 (2%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL-------TTSRGEAN 69
S S W FSRSSREEDDEEAL+WAALEKLPTY+R+R+ IL G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAE 129
VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189
+ ++ LP+ + TN E+ N L I+P++K+ + +L DVSG+IKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG VTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369
+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV 429
+HI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF SMGF+CP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGV 441
Query: 430 ADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHR 489
ADFLQEVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549
AAL T YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
+VT GGI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANT 669
P++F+EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS 729
F SF LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEE 787
ETLGVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 IESNEQ----DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPK 843
E E+ + I G+V LS+ GS+ +G+ +D S + +
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVT 847
Query: 844 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 903
++GMVLPF P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVS
Sbjct: 848 QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVS 907
Query: 904 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963
GAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLL
Sbjct: 908 GAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLL 967
Query: 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1023
FSAWLRL +VDS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELV
Sbjct: 968 FSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELV 1027
Query: 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKR
Sbjct: 1028 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKR 1087
Query: 1084 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 1143
GG+EIY GPLG HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ Y
Sbjct: 1088 GGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIY 1147
Query: 1144 KRSDLYRYKQS 1154
K+S+LY+ ++
Sbjct: 1148 KKSELYQRNKA 1158
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1600 bits (4142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 780/1133 (68%), Positives = 909/1133 (80%), Gaps = 26/1133 (2%)
Query: 35 EEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANE-----------VDVYNLGLQERQR 83
EEDDEEAL+WAAL+KLPTY+R+R IL GE E VDV++LG ER+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKF 143
L+++LV+V D DNERFLLKLK RI RVGID+P +EVR+EHL VEAE + ++ +P+ +
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 YTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203
TN E+ N L I+P++K+ L IL D+SG+IKP R+TLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRLK 229
Query: 204 PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
LK SG VTYNGH M++FVPQRTAAYISQHD HIGEMTVRETL+FSARCQGVG+R++ML
Sbjct: 230 -DLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
TEL RREKAA IKPD D+D +MKA A EGQE+N+ITDY LK+LGL++CADTMVGD+M+RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
ISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV LRQ IHI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQR 443
PAPETYDLFDDIILLSDG IVYQGPRE VLEFF MGF+CP+RKGVADFLQEVTSRKDQ+
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRE 503
QYWA +KPYR+V ++EFA AFQSFH G+ I++EL TPFDKSKSH AALTT YGV E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFF 563
LLKANI RELLL+KRNSFVYIF+ IQ+ V+ + MT+F RTKMH+D+V DG IF GA FF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 AITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLS 623
A+ M+ NG SE+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+EV + F+S
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGG 683
YYV+G+D N GRFFKQY L+L V+QMA+ALFRF+ RN++VAN FGSF LL+ + LGG
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 684 FILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRG 741
FIL+R+ + KWW W YW SP+ YAQNA+ NEFLGHSW K + S+ETLGVQ L SRG
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 742 FFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801
F WYW+G GAL GF++L N +TLALT+L P K + I+EE E E+ I GNV
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEE-ELKEKQANINGNV 827
Query: 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEV 861
SSN+ GST G S A+ S+P ++GMVLPF P SLTF+++
Sbjct: 828 LDVDTMASSNNLAIVGST----GTGSEI-------ADNSQPTQRGMVLPFTPLSLTFEDI 876
Query: 862 VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 921
YSVDMP+EMK G++ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGG
Sbjct: 877 KYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 936
Query: 922 YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM 981
YI GNI+ISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESLLFSAWLRL +VDS TRKM
Sbjct: 937 YIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKM 996
Query: 982 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
FI+EVMELVEL PLR +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 997 FIEEVMELVELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
Query: 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLI 1101
AAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG HS LI
Sbjct: 1057 AAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELI 1116
Query: 1102 SYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRYKQS 1154
YFE I GV KI DGYNPATWMLEV+ SQE AL +DF + Y++S+L++ ++
Sbjct: 1117 KYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKA 1169
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1600 bits (4142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/1151 (68%), Positives = 925/1151 (80%), Gaps = 28/1151 (2%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL-------TTSRGEAN 69
S S W FSRSSREEDDEEAL+WAALEKLPTY+R+R+ IL G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAE 129
VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189
+ ++ LP+ + TN E+ N L I+P++K+ + +L DVSG+IKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG VTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369
+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV 429
+HI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF S GF+CP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGV 441
Query: 430 ADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHR 489
ADFLQEVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549
AAL T YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
+VT GGI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANT 669
P++F+EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS 729
F SF LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEE 787
ETLGVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 IESNEQ----DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPK 843
E E+ + I G+V LS+ GS+ +G+ +D S + +
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVT 847
Query: 844 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 903
++GMVLPF P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVS
Sbjct: 848 QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVS 907
Query: 904 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963
GAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLL
Sbjct: 908 GAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLL 967
Query: 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1023
FSAWLRL +VDS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELV
Sbjct: 968 FSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELV 1027
Query: 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKR
Sbjct: 1028 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKR 1087
Query: 1084 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 1143
GG+EIY GPLG HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ Y
Sbjct: 1088 GGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIY 1147
Query: 1144 KRSDLYRYKQS 1154
K+S+LY+ ++
Sbjct: 1148 KKSELYQRNKA 1158
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1156 | ||||||
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.988 | 0.363 | 0.746 | 0.0 | |
| 359482993 | 1430 | PREDICTED: pleiotropic drug resistance p | 0.974 | 0.787 | 0.747 | 0.0 | |
| 359482991 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.980 | 0.784 | 0.743 | 0.0 | |
| 359482989 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.970 | 0.786 | 0.745 | 0.0 | |
| 356550580 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.969 | 0.786 | 0.74 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.784 | 0.745 | 0.0 | |
| 356555801 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.969 | 0.786 | 0.743 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.971 | 0.785 | 0.737 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.974 | 0.788 | 0.735 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.958 | 0.674 | 0.739 | 0.0 |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1808 bits (4683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 859/1151 (74%), Positives = 991/1151 (86%), Gaps = 8/1151 (0%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAE---AEA 839
VI EE ++ E GG ++LS S + + ++I G+ SS S ++ E A A
Sbjct: 782 VIVEESDNAE----TGGQIELSQRNSSIDQAASTERGEEI-GRSISSTSSAVREEAVAGA 836
Query: 840 SRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTAL 899
+ KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTAL
Sbjct: 837 NHNKKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTAL 896
Query: 900 MGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959
MGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+Y
Sbjct: 897 MGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVY 956
Query: 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 1019
ESLL+SAWLRL +V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKRLTIA
Sbjct: 957 ESLLYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIA 1016
Query: 1020 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1079
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL
Sbjct: 1017 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1076
Query: 1080 LMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDF 1139
L+KRGGQEIYVGPLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE LG+DF
Sbjct: 1077 LLKRGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDF 1136
Query: 1140 TEHYKRSDLYR 1150
TE YK SDLYR
Sbjct: 1137 TEIYKNSDLYR 1147
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482993|ref|XP_002285178.2| PREDICTED: pleiotropic drug resistance protein 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1803 bits (4670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1148 (74%), Positives = 985/1148 (85%), Gaps = 22/1148 (1%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRP 842
VI EE ++ E GG ++LS R+ S D Q+ S A A A+
Sbjct: 782 VIVEESDNAET----GGQIELS---------QRNSSID---------QAASTAVAGANHN 819
Query: 843 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 902
KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTALMGV
Sbjct: 820 KKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGV 879
Query: 903 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962
SGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESL
Sbjct: 880 SGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESL 939
Query: 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1022
L+SAWLRL +V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKRLTIAVEL
Sbjct: 940 LYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVEL 999
Query: 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+K
Sbjct: 1000 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1059
Query: 1083 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 1142
RGGQEIYVGPLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE LG+DFTE
Sbjct: 1060 RGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEI 1119
Query: 1143 YKRSDLYR 1150
YK SDLYR
Sbjct: 1120 YKNSDLYR 1127
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482991|ref|XP_003632876.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1802 bits (4667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 859/1155 (74%), Positives = 989/1155 (85%), Gaps = 21/1155 (1%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQ-------SSSQSLSLA 835
VI EE ++ E GG ++LS + S+ D RG++ +SS A
Sbjct: 782 VIVEESDNAET----GGQIELS----------QRNSSIDQRGEEIGRSISSTSSAVREEA 827
Query: 836 EAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGV 895
A A+ KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGV
Sbjct: 828 VAGANHNKKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGV 887
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
LTALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP
Sbjct: 888 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPH 947
Query: 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015
VT+YESLL+SAWLRL +V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKR
Sbjct: 948 VTVYESLLYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKR 1007
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF
Sbjct: 1008 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1067
Query: 1076 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELAL 1135
DEL L+KRGGQEIYVGPLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE L
Sbjct: 1068 DELLLLKRGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATL 1127
Query: 1136 GIDFTEHYKRSDLYR 1150
G+DFTE YK SDLYR
Sbjct: 1128 GVDFTEIYKNSDLYR 1142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482989|ref|XP_003632875.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1795 bits (4648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1148 (74%), Positives = 983/1148 (85%), Gaps = 26/1148 (2%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRP 842
VI EE ++ E GG ++L S NT +R + A A A+
Sbjct: 782 VIVEESDNAET----GGQIEL------SQRNT-------VREE---------AVAGANHN 815
Query: 843 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 902
KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTALMGV
Sbjct: 816 KKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGV 875
Query: 903 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962
SGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESL
Sbjct: 876 SGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESL 935
Query: 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1022
L+SAWLRL +V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKRLTIAVEL
Sbjct: 936 LYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVEL 995
Query: 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+K
Sbjct: 996 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1055
Query: 1083 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 1142
RGGQEIYVGPLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE LG+DFTE
Sbjct: 1056 RGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEI 1115
Query: 1143 YKRSDLYR 1150
YK SDLYR
Sbjct: 1116 YKNSDLYR 1123
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550580|ref|XP_003543663.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1783 bits (4617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 851/1150 (74%), Positives = 979/1150 (85%), Gaps = 29/1150 (2%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGI 60
MEG+ DI+ AS SLRRS++ W + + FSRSSREEDDEEALKWAALEKLPTYNRLRKG+
Sbjct: 1 MEGS-DIYRASNSLRRSSTAWRNSGVEVFSRSSREEDDEEALKWAALEKLPTYNRLRKGL 59
Query: 61 LTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVR 120
LT S G ANE+DV +LG QER +L+++LVKV + DNERFLLKLK RIDRVG+D+P +EVR
Sbjct: 60 LTASHGVANEIDVSDLGTQERHKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVR 119
Query: 121 YEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL 180
YEHLN+EAEAF+ S ALPSFI TNI E N L I SKK+H+TILKDVSG+IKP R+
Sbjct: 120 YEHLNIEAEAFVGSRALPSFINSVTNIIEGFFNLLHITTSKKKHVTILKDVSGIIKPRRM 179
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240
TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGE 239
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE++++TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSIVTD 299
Query: 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTF
Sbjct: 300 YTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTF 359
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 420
QIVN LRQ +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SMG
Sbjct: 360 QIVNSLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 419
Query: 421 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480
FRCP+RKGVADFLQEVTS+KDQ QYWA +++PYRFV V +FAEAFQSFH+G+K+ +EL
Sbjct: 420 FRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVKVTQFAEAFQSFHIGRKLGEELVV 479
Query: 481 PFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTL 540
PFDK+KSH AALTT+ YG+ K+ELLKAN+SRE LLMKRNSFVYIFKL Q++ +A++ MTL
Sbjct: 480 PFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTL 539
Query: 541 FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT++H++ + D G+++GA FF + M+ FNG +EISMTIAKLPVFYKQRD F+P WAY
Sbjct: 540 FLRTELHRNNMDDAGLYSGALFFTLIMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660
AIPSWILKIPV+ LEVAVWVFL+YYV+G+D N GRFFKQY +LL + QMASALFR IA
Sbjct: 600 AIPSWILKIPVTLLEVAVWVFLTYYVIGFDPNVGRFFKQYLILLFIGQMASALFRAIAAL 659
Query: 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS 720
GRNM+V+NTFG+FA+L L+LGG+++S+ DIK WW W YW SPL Y QNA++ NEFL +S
Sbjct: 660 GRNMIVSNTFGAFAVLTFLTLGGYVMSKNDIKNWWIWGYWISPLMYGQNALMVNEFLSNS 719
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W ++S LGV+ L+SRGF + YWYWLGLGA+ GFVLL N ++ AL L PF+KP
Sbjct: 720 W----HNTSRNLGVEYLESRGFPSSSYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKP 775
Query: 781 RAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEAS 840
+A ITEE NE G+ ++ + S + E+S
Sbjct: 776 QATITEEESPNE------------------------GTVAEVELPRIESSGRGDSVVESS 811
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
KKKGMVLPFEPHS+TFDEV+YSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLTALM
Sbjct: 812 HGKKKGMVLPFEPHSITFDEVIYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALM 871
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YE
Sbjct: 872 GVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYE 931
Query: 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1020
SLL+SAWLRL VDS+TRKMFI+EVMELVELNPLR SLVGLPGVSGLSTEQRKRLTIAV
Sbjct: 932 SLLYSAWLRLPSGVDSKTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAV 991
Query: 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 992 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051
Query: 1081 MKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFT 1140
MKRGGQEIYVGPLGRHS HLI YFE+I GV KIKDGYNPATWMLEV+ ++QEL+LG+DFT
Sbjct: 1052 MKRGGQEIYVGPLGRHSTHLIKYFESIGGVSKIKDGYNPATWMLEVTTSAQELSLGVDFT 1111
Query: 1141 EHYKRSDLYR 1150
+ YK SDLYR
Sbjct: 1112 DLYKNSDLYR 1121
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1782 bits (4615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 859/1153 (74%), Positives = 981/1153 (85%), Gaps = 34/1153 (2%)
Query: 1 MEGTHDIFMASTSLR-RSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
MEG+ DI+ AS SLR RS++ W + + AFSRSSREEDDEEALKWAALEKLPTYNRLRKG
Sbjct: 1 MEGS-DIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 ILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEV 119
+LT S G ANE+DV +LG+QERQ+L+++LVKV + DNERFLLKLK RIDRVG+D+P +EV
Sbjct: 60 LLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEV 119
Query: 120 RYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGR 179
RYEHLN+EAEAF+ S ALPSFI TN+ E N L + SKK+H+TILKDVSG+IKP R
Sbjct: 120 RYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRR 179
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239
+TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 300 DYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419
FQIV+ LR +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 420 GFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479
GFRCP+RKGVADFLQEVTS+KDQ QYW +++PYRFVTV +FAEAFQSFH+G K+ +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMT 539
PFD++KSH AALTT+ YG+ K+ELLKAN SRE LLMKRNSFVY+FKL Q+ +A+V MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 540 LFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 599
LFLRT+MH + + D G++AGA FF + V FNG +EISMTIAKLPVFYKQR+ F+P WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 600 YAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAV 659
YAIPSWILKIPV+ +EVAVWVFL+YYV+G+D N GRFFKQY +LL V+QMAS LFR IA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 660 TGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719
GRNM+VANTFG+FA++ +++LGGFILS+ DIK WW W YW SPL Y QNA++ NEFL +
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEK 779
SW +++ LGV+ L+SR FF YWYWLGLGAL GFV L N + LAL FL PF+K
Sbjct: 720 SW----HNATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 780 PRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIR--GQQSSSQSLSLAEA 837
P+A ITE+ SNE G+ DI G +SS + SL
Sbjct: 776 PQATITEDESSNE------------------------GTLADIELPGIESSGRGDSL--V 809
Query: 838 EASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897
E+S KKKGMVLPFEPHS+TFDEVVYSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLT
Sbjct: 810 ESSHGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLT 869
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
ALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT
Sbjct: 870 ALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVT 929
Query: 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1017
+YESLL+SAWLRL VDS+TRKMFI+EVMELVELNP+R SLVGLPGVSGLSTEQRKRLT
Sbjct: 930 VYESLLYSAWLRLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLT 989
Query: 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE
Sbjct: 990 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1049
Query: 1078 LFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGI 1137
LFLMKRGGQEIYVGPLGRHS HLI YFE+I GV KIKDGYNPATWMLEV+A +QEL+LG+
Sbjct: 1050 LFLMKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGV 1109
Query: 1138 DFTEHYKRSDLYR 1150
DFT+ YK SDLYR
Sbjct: 1110 DFTDLYKNSDLYR 1122
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555801|ref|XP_003546218.1| PREDICTED: pleiotropic drug resistance protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1781 bits (4612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 855/1150 (74%), Positives = 979/1150 (85%), Gaps = 29/1150 (2%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGI 60
MEG+ DI+ AS SLRRS++ W + + FSRSSREEDDEEALKWAALEKLPTYNRLRKG+
Sbjct: 1 MEGS-DIYRASNSLRRSSTVWRNSGVEVFSRSSREEDDEEALKWAALEKLPTYNRLRKGL 59
Query: 61 LTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVR 120
LT S G ANE+DV +LG+QERQ+L+++LVKV + DNERFLLKLK RIDRVG+D+P +EVR
Sbjct: 60 LTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVR 119
Query: 121 YEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL 180
YEHLN+EAEAF+ S ALPSFI TN+ E N L I SKK+H+TILKDVSG+IKP R+
Sbjct: 120 YEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHISTSKKKHVTILKDVSGIIKPRRM 179
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240
TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGE 239
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE++++TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSLVTD 299
Query: 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTF
Sbjct: 300 YTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTF 359
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 420
QIV+ LRQ +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SMG
Sbjct: 360 QIVSFLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 419
Query: 421 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480
FRCP+RKGVADFLQEVTS+KDQ QYWA +++PYRFVTV +F+EAFQSFH+G K+ +EL
Sbjct: 420 FRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVTVTQFSEAFQSFHIGGKLGEELAV 479
Query: 481 PFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTL 540
PFDK+KSH AALTT+ YG+ K+ELLKAN+SRE LLMKRNSFVYIFKL Q++ +A++ MTL
Sbjct: 480 PFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTL 539
Query: 541 FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT++H++ + D G++AGA FF + M+ FNG +EISMTIAKLPVFYKQRD F+P WAY
Sbjct: 540 FLRTELHRNNMDDAGLYAGALFFTLVMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660
AIPSWILKIPV+ LEVAVWVFL+YYV+G+D N GR FKQY +LL + QMASALFR IA
Sbjct: 600 AIPSWILKIPVTLLEVAVWVFLTYYVIGFDPNVGRLFKQYLILLFIGQMASALFRAIAAL 659
Query: 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS 720
GRNM+V+NTFG+FA+L L+LGGF++++ DIK WW W YW SPL Y Q A++ NEFL +S
Sbjct: 660 GRNMIVSNTFGAFAVLTFLTLGGFVMAKSDIKNWWIWGYWISPLMYGQTALMVNEFLSNS 719
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W +SS LGV+ L+SRGF + YWYWLGLGA+ GFVLL N ++ AL L PF+KP
Sbjct: 720 W----HNSSRNLGVEYLESRGFPSSAYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKP 775
Query: 781 RAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEAS 840
+A I EE NE V+L + S R GS E+S
Sbjct: 776 QATIAEEESPNEVTV---AEVELPRIESSG----RGGSV-----------------VESS 811
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
KKKGMVLPFEPHS+TFDEVVYSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLTALM
Sbjct: 812 HGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALM 871
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VT+YE
Sbjct: 872 GVSGAGKTTLMDVLAGRKTGGYIDGNIKISGYPKKQETFARISGYCEQNDIHSPHVTVYE 931
Query: 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1020
SLL+SAWLRL VDS+TRKMFI+EVMELVELNPLR SLVGLPGVSGLSTEQRKRLTIAV
Sbjct: 932 SLLYSAWLRLPSSVDSQTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAV 991
Query: 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 992 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051
Query: 1081 MKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFT 1140
MKRGGQEIYVGPLGRHS HLI YFE+I GV KIKDGYNPATWMLEV+ ++QEL+LG+DFT
Sbjct: 1052 MKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTTSAQELSLGVDFT 1111
Query: 1141 EHYKRSDLYR 1150
+ YK SDLYR
Sbjct: 1112 DLYKNSDLYR 1121
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1773 bits (4591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1149 (73%), Positives = 977/1149 (85%), Gaps = 26/1149 (2%)
Query: 3 GTHDIFMASTSLRRSASR-WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL 61
T D + AS SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLR+G+L
Sbjct: 2 ATADTYRASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLL 61
Query: 62 TTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRY 121
S GEA+E+D++NLG QE++ L+++LVKV + DNE+FLLKLKNRIDRVGID+P++EVR+
Sbjct: 62 MGSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRF 121
Query: 122 EHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLT 181
EHL ++AEAF+ S ALPSF F N E ILN +RI+PSKKR TIL DVSG+IKP RLT
Sbjct: 122 EHLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLT 181
Query: 182 LLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241
LLLGPPSSGKTTLLLALAGKLDP LKV G VTYNGH M+EFVPQRTAAYISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEM 241
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TVRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 TVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDY 301
Query: 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQ
Sbjct: 302 TLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQ 361
Query: 362 IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGF 421
I+N L+Q IHI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VLEFF S+GF
Sbjct: 362 IINSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGF 421
Query: 422 RCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481
+CP+RKG ADFLQEVTSRKDQ QYWA K+ PY FVTV+EFAEAFQSFH+G+K++DEL +P
Sbjct: 422 KCPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASP 481
Query: 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLF 541
FD++KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVYIFKL Q+A VAV+ MTLF
Sbjct: 482 FDRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLF 541
Query: 542 LRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYA 601
LRT+M+K++ DG I+ GA FF + M+ FNG +E++MTIAKLPVFYKQRDF F+P WAYA
Sbjct: 542 LRTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYA 601
Query: 602 IPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTG 661
+P+W+LKIP++F+EVAVWVF++YYV+G+D N R F+QY LLL VNQMAS LFRFIA G
Sbjct: 602 LPTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAG 661
Query: 662 RNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721
RNM+VA+TFG+FA+L+L++LGGFILS +++KKWW W YW SPL YAQNAIV NEFLG SW
Sbjct: 662 RNMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSW 721
Query: 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781
K +S+E+LG+ VLKSRGFF +WYW+G GAL GF+ + NF YTL L +L+PFEKP+
Sbjct: 722 SKNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQ 781
Query: 782 AVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASR 841
AVITEE + N ++ +T D + + + A AE +
Sbjct: 782 AVITEE-----------------------SDNAKTATTGD--ETHTWGEHMVEAIAEGNH 816
Query: 842 PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMG 901
KKKGMVLPF+PHS+TFD++ YSVDMPEEMK QG LED+L LL GVSGAFRPGVLTALMG
Sbjct: 817 NKKKGMVLPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMG 876
Query: 902 VSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961
VSGAGKTTLMDVLAGRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VT++ES
Sbjct: 877 VSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHES 936
Query: 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 1021
LL+SAWLRL +V+SETRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVE
Sbjct: 937 LLYSAWLRLPSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVE 996
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081
LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LM
Sbjct: 997 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1056
Query: 1082 KRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTE 1141
KRGGQEIYVGPLGRHS HLI+YFE I GV KIKDGYNPATWMLEV+ +QE LG+DFTE
Sbjct: 1057 KRGGQEIYVGPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTE 1116
Query: 1142 HYKRSDLYR 1150
YK SDLYR
Sbjct: 1117 IYKNSDLYR 1125
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1773 bits (4591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 851/1157 (73%), Positives = 986/1157 (85%), Gaps = 30/1157 (2%)
Query: 1 MEGTHDIFMASTSLRRS-ASRWNTNSIGAFSRSSR--EEDDEEALKWAALEKLPTYNRLR 57
MEGT ++++A SLRR +S W +N++ FS+SSR E+DDEEALKWAA+E+LPTY+RL+
Sbjct: 1 MEGT-ELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLK 59
Query: 58 KGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKV 117
KG+LTTS+GEANE+DV NLG E++ L+D+LVKV + DNE FLLKLKNRIDRVGI+LP +
Sbjct: 60 KGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMI 119
Query: 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKP 177
EVR+EHLNVE EA + S ALP+F F +I E LN+L I+PS K+ L+IL+DVSG+IKP
Sbjct: 120 EVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKP 179
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237
R+TLLLGPPSSGKTTLLLALAGKLDP LK SG VTYNGH+M+EFVPQRTAAYISQHD H
Sbjct: 180 KRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAF+ARCQGVG RYEM++EL RREKA+ IKPDPDIDV+MKA+ATEGQEANV
Sbjct: 240 IGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANV 299
Query: 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCAD MVG+EM+RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
TT+QIVN ++Q IHI +GTAVISLLQP PETY+LFDDIILLSDGQIVYQGPRE VLEFF
Sbjct: 360 TTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFE 419
Query: 418 SMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477
MGF+CP+RKGVADFLQEVTSRKDQ QYWA K+KPY FVTV+EFAEAFQSF VG+++ E
Sbjct: 420 YMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAE 479
Query: 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 537
L TPFDKSKSH AALTT+ YGVGK ELLKA SRE+LLMKRNSFVYIFKL Q+ +A+V
Sbjct: 480 LSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVA 539
Query: 538 MTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLFLRT+MH+D+VT+GGI+ GA FF++ + FNG SEIS+TIAKLPVFYKQR F+PP
Sbjct: 540 MTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPP 599
Query: 598 WAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFI 657
WA+++P WI KIP++ ++VA+WVFL+YYV+G+D N GRFFKQY LL V+QMAS LFRFI
Sbjct: 600 WAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFI 659
Query: 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717
A GRNM+VANTFGSFALL L +LGGFILSR++IKKWW W YW SPL Y QNAIV NEFL
Sbjct: 660 AAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPF 777
G+SW K D++ETLG+QVL+SRGFF H YWYW+G+GAL GF LL NF +TLALTFL P
Sbjct: 720 GNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPL 779
Query: 778 EKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEA 837
+KP+AVI+E+ SN + G +QLS++ T+ I
Sbjct: 780 QKPQAVISEDSASN-TSGKTGEVIQLSSV-----------RTELI--------------V 813
Query: 838 EASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897
E + K+KGMVLPFEPHS+TF+++ YSVDMP+EMK QG ED+L LL GVSGAFRPGVLT
Sbjct: 814 EENHQKQKGMVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLT 873
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
ALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VT
Sbjct: 874 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVT 933
Query: 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1017
+YESLL+S+WLRL PEV+SETRKMFI+EVMELVEL PLRQ+LVGLPGVSGLSTEQRKRLT
Sbjct: 934 VYESLLYSSWLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLT 993
Query: 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE
Sbjct: 994 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1053
Query: 1078 LFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGI 1137
L LMKRGGQEIYVGPLGRHSC LI YFEAI GV IKDGYNPATWMLEVS+++QE+ LG+
Sbjct: 1054 LLLMKRGGQEIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGL 1113
Query: 1138 DFTEHYKRSDLYRYKQS 1154
DF YK S+LYR ++
Sbjct: 1114 DFAAIYKNSELYRRNKA 1130
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1768 bits (4579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 845/1142 (73%), Positives = 972/1142 (85%), Gaps = 34/1142 (2%)
Query: 10 ASTSLRRSASR-WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEA 68
AS SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLR+G+L S GEA
Sbjct: 230 ASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLMGSEGEA 289
Query: 69 NEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEA 128
+E+D++NLG QE++ L+++LVKV + DNE+FLLKLKNRIDRVGID+P++EVR+EHL ++A
Sbjct: 290 SEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLTIDA 349
Query: 129 EAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPS 188
EAF+ S ALPSF F N E ILN +RI+PSKKR TIL DVSG+IKP RLTLLLGPPS
Sbjct: 350 EAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLLGPPS 409
Query: 189 SGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLDP LKV G VTYNGH M+EFVPQRTAAYISQHD HIGEMTVRETLA
Sbjct: 410 SGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVRETLA 469
Query: 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308
FSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LGL
Sbjct: 470 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 529
Query: 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
D+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI+N L+Q
Sbjct: 530 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIINSLKQ 589
Query: 369 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKG 428
IHI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VLEFF S+GF+CP+RKG
Sbjct: 590 TIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCPERKG 649
Query: 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSH 488
ADFLQEVTSRKDQ QYWA K+ PY FVTV+EFAEAFQSFH+G+K++DEL +PFD++KSH
Sbjct: 650 EADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDRAKSH 709
Query: 489 RAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548
AALTT+ YGV K+ELL AN+SRE LLMKRNSFVYIFKL Q+A VAV+ MTLFLRT+M+K
Sbjct: 710 PAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRTEMNK 769
Query: 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILK 608
++ DG I+ GA FF + M+ FNG +E++MTIAKLPVFYKQRDF F+P WAYA+P+W+LK
Sbjct: 770 NSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPTWVLK 829
Query: 609 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 668
IP++F+EVAVWVF++YYV+G+D N R F+QY LLL VNQMAS LFRFIA GRNM+VA+
Sbjct: 830 IPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNMIVAS 889
Query: 669 TFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS 728
TFG+FA+L+L++LGGFILS +++KKWW W YW SPL YAQNAIV NEFLG SW K +S
Sbjct: 890 TFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNVTNS 949
Query: 729 SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788
+E+LG+ VLKSRGFF +WYW+G GAL GF+ + NF YTL L +L+PFEKP+AVITEE
Sbjct: 950 TESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVITEE- 1008
Query: 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMV 848
S N T ++++ + A AE + KKKGMV
Sbjct: 1009 --------------------SDNAKT------------ATTEHMVEAIAEGNHNKKKGMV 1036
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
LPF+PHS+TFD++ YSVDMPEEMK QG LED+L LL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 1037 LPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKT 1096
Query: 909 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968
TLMDVLAGRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VT++ESLL+SAWL
Sbjct: 1097 TLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWL 1156
Query: 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028
RL +V+SETRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 1157 RLPSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1216
Query: 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQEI
Sbjct: 1217 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEI 1276
Query: 1089 YVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDL 1148
YVGPLGRHS HLI+YFE I GV KIKDGYNPATWMLEV+ +QE LG+DFTE YK SDL
Sbjct: 1277 YVGPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDL 1336
Query: 1149 YR 1150
YR
Sbjct: 1337 YR 1338
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1156 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.975 | 0.767 | 0.559 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.685 | 0.556 | 0.602 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.671 | 0.533 | 0.515 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.671 | 0.534 | 0.522 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.655 | 0.525 | 0.536 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.668 | 0.544 | 0.487 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.650 | 0.531 | 0.515 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.648 | 0.525 | 0.470 | 1.7e-304 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.640 | 0.510 | 0.482 | 2e-303 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.642 | 0.525 | 0.471 | 7.9e-300 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3256 (1151.2 bits), Expect = 0., P = 0.
Identities = 644/1152 (55%), Positives = 813/1152 (70%)
Query: 13 SLRRSASRWNTNSIGAFXXXXXXXXXXX----ALKWAALEKLPTYNRLRKGILTT----- 63
S+ RS SR + N F ALKWAA+EKLPTY+RLR ++
Sbjct: 20 SISRSVSRASRNIEDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDD 79
Query: 64 ---SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVR 120
++ + EVDV L ++RQ+ ID + KV + DNER L KL+NRIDRVGI LP VEVR
Sbjct: 80 VYGNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVR 139
Query: 121 YEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL 180
YEHL ++A+ + + +LP+ + N+ E L + I +KK LTILKD+SGVIKPGR+
Sbjct: 140 YEHLTIKADCYTGNRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRM 199
Query: 181 TLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240
TLLLGPP D +L+VSG +TYNG+ +DEFVP++T+AYISQ+D H+G
Sbjct: 200 TLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGI 259
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTV+ETL FSARCQGVGTRY++L ELARREK AGI P+ D+D++MKA A +G + +++TD
Sbjct: 260 MTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTD 319
Query: 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+C DT+VGD+M+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTTF
Sbjct: 320 YTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTF 379
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 420
QIV CL+Q +H+N T ++SLLQPAPET+DLFDDIIL+S+GQIVYQGPR+ +LEFF S G
Sbjct: 380 QIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFG 439
Query: 421 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480
F+CP+RKG ADFLQEVTS+KDQ QYW + +PY ++ V EFA ++SFHVG K+S+EL
Sbjct: 440 FKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAV 499
Query: 481 PFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTL 540
PFDKS+ H+AAL + Y V KRELLK+ +E LLM+RN+F Y+FK +QI +A + TL
Sbjct: 500 PFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTL 559
Query: 541 FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT+M+ D ++ GA F + + FNGF+E++M +++LPVFYKQRD F+P W +
Sbjct: 560 FLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTF 619
Query: 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660
++P+++L IP S LE W+ ++YY +G+ +A RFFKQ+ L+ + QMA++LFR IA
Sbjct: 620 SLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASV 679
Query: 661 GRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS 720
R M++ANT + I WW WAYW SPLTYA N +V NE
Sbjct: 680 CRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPR 739
Query: 721 W--KKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDPFE 778
W K + +S+ LG VL + + + WYW +TLALT+L+P
Sbjct: 740 WMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLG 799
Query: 779 KPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGXXXXXXXXXXXXXX 838
K ++ EE NE D+ G + +L S+ R G G
Sbjct: 800 KKAGLLPEE--ENEDADQ-GKDPMRRSL--STADGNRRGEV--AMGRMSRDSAAEASGGA 852
Query: 839 XXRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA 898
KKGMVLPF P +++FD+V Y VDMP EM+ QGV E +L LL GV+GAFRPGVLTA
Sbjct: 853 G---NKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTA 909
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958
LMGVSGAGKTTLMDVLAGRKTGGYI G++ ISG+PK QETFARISGYCEQ DIHSP VT+
Sbjct: 910 LMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTV 969
Query: 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 1018
ESL+FSA+LRL EV + + MF+D+VMELVEL+ LR S+VGLPGV+GLSTEQRKRLTI
Sbjct: 970 RESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTI 1029
Query: 1019 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078
AVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL
Sbjct: 1030 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1089
Query: 1079 FLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGID 1138
LMKRGGQ IY GPLG++S ++ YFE+ PGV KI + YNPATWMLE S+ + EL L +D
Sbjct: 1090 MLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVD 1149
Query: 1139 FTEHYKRSDLYR 1150
F E Y +S L++
Sbjct: 1150 FAELYNQSALHQ 1161
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2563 (907.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 481/798 (60%), Positives = 601/798 (75%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNSIGA--FXXXXXXXXXXXALKWAALEKLPTYNRLRK 58
MEGT AS S+RR++S W +S G F AL+WAALEKLPT++RLRK
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDS-GREIFSRSSREEDDEEALRWAALEKLPTFDRLRK 58
Query: 59 GILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPK 116
GILT S G NE+D+ LG Q+ ++L+++L+KV D ++E+ L KLK RIDRVGIDLP
Sbjct: 59 GILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPT 118
Query: 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIK 176
+EVR++HL VEAE + ALP+F+ F +N + LN L ++P++K+ TIL DVSG++K
Sbjct: 119 IEVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVK 178
Query: 177 PGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN 236
PGR+ LLLGPP D LK +G VTYNGH M+EFVPQRTAAYI Q+D
Sbjct: 179 PGRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDV 238
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
HIGEMTVRET A++AR QGVG+RY+MLTELARREK A IKPDPDID++MKA++T G++ N
Sbjct: 239 HIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTN 298
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
V+TDY LK+LGL+VCADTMVGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDS
Sbjct: 299 VMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDS 358
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFF 416
STT+QIVN LR +HI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFF
Sbjct: 359 STTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFF 418
Query: 417 ASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISD 476
+MGF+CP RKGVADFLQEVTS+KDQ QYWA +++PYRF+ V+EFAEAFQSFHVG++I D
Sbjct: 419 ETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGD 478
Query: 477 ELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVV 536
EL PFDK+KSH AALTT+ YGVG +EL+K + SRE LLMKRNSFVY FK Q+ +A +
Sbjct: 479 ELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFL 538
Query: 537 YMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFP 596
MTLF RT+M K T DG ++ GA FF + M+ FNG SE+SMTIAKLPVFYKQRD F+P
Sbjct: 539 TMTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYP 598
Query: 597 PWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRF 656
W Y++P W+LKIP+SF+E A+ F++YYV+G+D N GR FKQY LL+ +NQMASALF+
Sbjct: 599 AWVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKM 658
Query: 657 IAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEF 716
+A GRNM+VANT R+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 659 VAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEF 718
Query: 717 LGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDP 776
GHSW + ++SSETLGV LKSRGF H YWYW +TLALTFL+
Sbjct: 719 FGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNS 778
Query: 777 FEKPRAVITEEIESNEQD 794
KP+AVI EE S+E +
Sbjct: 779 LGKPQAVIAEEPASDETE 796
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2182 (773.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 404/783 (51%), Positives = 546/783 (69%)
Query: 42 LKWAALEKLPTYNRLRKGIL--TTSRG--EANEVDVYNLGLQERQRLIDKLVKVTDVDNE 97
L+WAA+E+LPT++RLRKG+L T++ G E ++D+ L ++++ L++ ++ + DNE
Sbjct: 61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNE 120
Query: 98 RFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157
+FL L+ R DRVGI++PK+EVRYE+++VE + AS ALP+ N E IL + +
Sbjct: 121 KFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHL 180
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGH 217
+PSK++ + ILKD+SG++KP R+TLLLGPP D TL++SG +TY GH
Sbjct: 181 LPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 240
Query: 218 DMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ EFVPQ+T AYISQHD H GEMTVRE L FS RC GVG+RY++++EL+RREK GIKP
Sbjct: 241 EFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKP 300
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DP ID +MK+IA GQE +++TDY LK+LGLD+CAD + GD M RGISGGQKKR+TTGEM
Sbjct: 301 DPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEM 360
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+VGPA ALFMDEISTGLDSSTTFQI +RQ +HI+ T +ISLLQPAPET++LFDDIIL
Sbjct: 361 LVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIIL 420
Query: 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVT 457
LS+GQIVYQGPR+ VLEFF GF+CP+RKGVADFLQEVTS+KDQ QYW +E+PY +V+
Sbjct: 421 LSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVS 480
Query: 458 VQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMK 517
V +F+ F +FH GQK++ E R P+DK+K+H AAL T+ YG+ EL KA RE LLMK
Sbjct: 481 VSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMK 540
Query: 518 RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEIS 577
RNSFVY+FK +QI ++++ MT++LRT+MH TV DG F GA FF++ V FNG +E++
Sbjct: 541 RNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELA 600
Query: 578 MTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637
T+ +LPVFYKQRDF F+PPWA+A+P+W+LKIP+S +E +W+ L+YY +G+ +A RFF
Sbjct: 601 FTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFF 660
Query: 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKW 697
+Q VNQMA +LFRF+ GR V++N+ ++DI+ W W
Sbjct: 661 RQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTW 720
Query: 698 AYWCSPLTYAQNAIVANEFLGHSWKKFTQDS---SETLGVQVLKSRGFFAHEYWYWXXXX 754
AY+ SP+ Y Q AIV NEFL W D+ ++T+G +LKSRGFF YW+W
Sbjct: 721 AYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIV 780
Query: 755 XXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNT 814
Y LAL +L+P +A + EE + ++ + G + L SSN
Sbjct: 781 ALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSSNKGP 840
Query: 815 RSG 817
+ G
Sbjct: 841 KRG 843
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2182 (773.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 410/784 (52%), Positives = 545/784 (69%)
Query: 42 LKWAALEKLPTYNRLRKGIL--TTSRGEAN--EVDVYNLGLQERQRLIDKLVKVTDVDNE 97
L+WAALE+LPTY+RLRKG+L T G+ +VDV NL +E++ L++ ++K + DNE
Sbjct: 59 LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNE 118
Query: 98 RFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157
+FL +L+ R DRVGI++PK+EVRYE+L+VE + AS ALP+ N E IL +
Sbjct: 119 KFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHL 178
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGH 217
+PSKKR + ILKD+SG+IKP R+TLLLGPP D TL++SG +TY GH
Sbjct: 179 LPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 238
Query: 218 DMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ EFVPQ+T AYISQHD H GEMTVRE+L FS RC GVGTRY++LTEL+RRE+ AGIKP
Sbjct: 239 EFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKP 298
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DP+ID +MK+IA GQE +++TDY LK+LGLD+CADT+VGD M RGISGGQ+KR+TTGEM
Sbjct: 299 DPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEM 358
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+VGPA ALFMDEISTGLDSSTTFQI +RQ +HI T VISLLQPAPET++LFDDIIL
Sbjct: 359 LVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIIL 418
Query: 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVT 457
LS+GQIVYQG R+ VLEFF MGF+CP+RKG+ADFLQEVTS+KDQ QYW +E PY +V+
Sbjct: 419 LSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVS 478
Query: 458 VQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMK 517
V +F+ F SFH GQ+++ E R P+DK+K+H AAL T+ YG+ ++L KA RE LLMK
Sbjct: 479 VHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMK 538
Query: 518 RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEIS 577
RNSFVY+FK +QI ++++ MT++ RT+MH TV DG F GA FF++ + FNG +E++
Sbjct: 539 RNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELA 598
Query: 578 MTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637
T+ +LPVF+KQRDF F+PPWA+A+P ++LKIP+S +E +W+ L+YY +G+ +A RFF
Sbjct: 599 FTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFF 658
Query: 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKW 697
+Q VNQMA +LFRF+ GR V+AN+ ++DI W W
Sbjct: 659 RQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTW 718
Query: 698 AYWCSPLTYAQNAIVANEFLGHSWKKFTQDS---SETLGVQVLKSRGFFAHEYWYWXXXX 754
Y+ SP+ Y Q A+V NEFL W D+ ++T+G +LKSRGFF YW+W
Sbjct: 719 CYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIG 778
Query: 755 XXXXXXXXXXXAYTLALTFLDPFEKPRAV-ITEEIESNEQDDRIGGNVQLSTLGGSSNHN 813
Y +AL +L+P +A + EE + + G + L +S+H
Sbjct: 779 ALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTGGSVVELTSTSSHG 838
Query: 814 TRSG 817
+ G
Sbjct: 839 PKKG 842
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2141 (758.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 413/770 (53%), Positives = 531/770 (68%)
Query: 41 ALKWAALEKLPTYNRLRKGILTTSRGE----ANE-----VDVYNLGLQERQRLIDKLVKV 91
ALKWA++EKLPTYNRLR ++ GE N+ VDV L +ERQ+ ID + KV
Sbjct: 50 ALKWASIEKLPTYNRLRTSLMP-ELGEDDVYGNQILNKAVDVTKLDGEERQKFIDMVFKV 108
Query: 92 TDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDI 151
+ DNER L KL+NRIDRVGI LP VEVRY+HL V+A+ + +LPS + N+ E
Sbjct: 109 AEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLPSLLNAVRNMGEAA 168
Query: 152 LNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGT 211
L + I +KK LTILKDVSG++KP R+TLLLGPP D +L VSG
Sbjct: 169 LGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDKSLDVSGE 228
Query: 212 VTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
VTYNG+ ++EFVP +T+AYISQ+D H+G MTV+ETL FSARCQGVGTRY++L ELARREK
Sbjct: 229 VTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELARREK 288
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
AGI P+ D+D++MKA A +G ++++ITDY LK+LGLD+C DT+VGD+M+RGISGGQKKR
Sbjct: 289 DAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRGISGGQKKR 348
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
VTTGEM+VGP LFMDEISTGLDSSTTFQIV CL+Q +H+ T +ISLLQPAPET+DL
Sbjct: 349 VTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQPAPETFDL 408
Query: 392 FDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEK 451
FDDIILLS+GQIVYQGPR+ +LEFF S GF+CP+RKG ADFLQEVTS+KDQ QYW +
Sbjct: 409 FDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYWVDPNR 468
Query: 452 PYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISR 511
PYR++ V EFA +F+ FHVG K+S+EL P+DKSKSH+AAL + Y + K ELLK+ +
Sbjct: 469 PYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTELLKSCWDK 528
Query: 512 ELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFN 571
E +LMKRNSF Y+FK +QI +A + TL+LRT+MH D I+ G+ FA+ + FN
Sbjct: 529 EWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSLLFAMIVNMFN 588
Query: 572 GFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631
G +E++MTI +LPVFYKQRD F PPW Y +P+++L IP+S E W+ ++YY +GY
Sbjct: 589 GLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVTYYSIGYAP 648
Query: 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDI 691
+A RFFKQ+ ++ + QMA+ +FRFIA T R M +ANT R +I
Sbjct: 649 DAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGGFLLPRSEI 708
Query: 692 KKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYW 750
WW+WAYW SPL+YA NAI NE W K + +S+ LG VL F + WYW
Sbjct: 709 PVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYW 768
Query: 751 XXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 800
+TLALT+LDP K +A++ +E E E + G N
Sbjct: 769 IGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKE-EDEEAKGKAGSN 817
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2057 (729.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 379/777 (48%), Positives = 525/777 (67%)
Query: 21 WNT--NSIGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGL 78
WN+ N+ L+WAAL++LPTY+R+R+GI GE E+ + NL
Sbjct: 2 WNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLEA 61
Query: 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALP 138
E++ L+D+LV + D E+F +++ R D V + PK+EVR+++L VE+ + S ALP
Sbjct: 62 SEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRALP 121
Query: 139 SFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXX 198
+ F N+ E +L + +I K+ LTIL +SGVI+P RLTLLLGPP
Sbjct: 122 TIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLAL 181
Query: 199 XXXXDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258
L+ SG +TYNG+D+ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQGVG
Sbjct: 182 AGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGF 241
Query: 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318
+Y+ML ELARREK AGI PD D+D++MK++A G E +++ +Y +K+LGLD CADT+VGD
Sbjct: 242 KYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGD 301
Query: 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378
EMI+GISGGQKKR+TTGE++VGPA LFMDEIS GLDSSTT QI+ +R + H GT V
Sbjct: 302 EMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTV 361
Query: 379 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438
ISLLQP+PETY+LFDD+IL+S+GQI+YQGPR+ VL+FF+S+GF CP RK VADFLQEVTS
Sbjct: 362 ISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTS 421
Query: 439 RKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYG 498
+KDQ+QYW+ +PYR+V +FAEAF+S+ G+K++ +L PFDK +H AAL+T YG
Sbjct: 422 KKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYG 481
Query: 499 VGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFA 558
V K ELLK N + + LMK+N+F+Y+FK +Q+ VA++ MT+F RT MH +T+ DG I+
Sbjct: 482 VKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYL 541
Query: 559 GATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAV 618
G+ +F++ ++ FNGF+E+ M +AKLPV YK RD F+P WAY +PSW+L IP S +E A
Sbjct: 542 GSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESAT 601
Query: 619 WVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXX 678
WV ++YY +GYD RF +Q+ L ++QM+ LFR + GR+M+VANT
Sbjct: 602 WVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVV 661
Query: 679 XXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD-SSETLGVQVL 737
R+ I WW W YW SPL YAQNA NEFLGH+W+K + +S++LG+ +L
Sbjct: 662 MTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALL 721
Query: 738 KSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVIT-EEIESNEQ 793
K R F+ YWYW +TL L L+P+ K +AV++ EE++ E+
Sbjct: 722 KERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREK 778
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2032 (720.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 390/757 (51%), Positives = 519/757 (68%)
Query: 41 ALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFL 100
ALKWAALEKLPT+ RLR I+ + VDV LG+ +RQ+ ID + KVT+ DNE+FL
Sbjct: 39 ALKWAALEKLPTFARLRTTII---HPHEDLVDVTKLGVDDRQKFIDSIFKVTEEDNEKFL 95
Query: 101 LKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPS 160
K +NRIDRV I LP VEVR+E + +EA + ALP+ NI E L L +
Sbjct: 96 KKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPTLPNAALNIAERGLRLLGFNFT 155
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMD 220
K +TIL+DVSG+IKP R+TLLLGPP D +LKV+G VTYNGH ++
Sbjct: 156 KTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLE 215
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
EFVPQ+T+AYISQ+D H+G MTV+ETL FSARCQGVGTRY++L+EL RREK AGI P+P+
Sbjct: 216 EFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSELVRREKDAGILPEPE 275
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+D++MK+IA ++++ITDY L++LGLD+C DT+VGDEMIRGISGGQKKRVTTGEM+VG
Sbjct: 276 VDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVG 335
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P LFMDEISTGLDSSTT+QIV CL++ + T ++SLLQPAPET++LFDDIILLS+
Sbjct: 336 PTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSE 395
Query: 401 GQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQE 460
GQIVYQGPR+ VL FF + GF+CP RKG ADFLQEVTSRKDQ QYWA +KPY +++V E
Sbjct: 396 GQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSE 455
Query: 461 FAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNS 520
F++ F++FHVG + +L P+D+ KSH A+L + + V K +L K RELLLMKRN+
Sbjct: 456 FSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNA 515
Query: 521 FVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTI 580
F YI K +QI +A++ T++LRT+M +DG ++ GA F++ + FNGF+E+++ I
Sbjct: 516 FFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMI 575
Query: 581 AKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQY 640
+LPVFYKQRD F PPW +++P+++L IP+S E VWV ++YY++G+ RF K
Sbjct: 576 QRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHL 635
Query: 641 ALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYW 700
++ QMA +FRFIA T R+M++ANT R +I KWWKWAYW
Sbjct: 636 LVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYW 695
Query: 701 CSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXXXXXXX 759
SP+ Y +A+ NE L W + + D+S +LG+ VL+ F WYW
Sbjct: 696 VSPMAYTYDALTVNEMLAPRWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGF 755
Query: 760 XXXXXXAYTLALTFLDPFEKPRAVITEE-IESNEQDD 795
TLALTFL+P EK +AV+++E E N ++
Sbjct: 756 TVLFNILVTLALTFLNPLEKQQAVVSKENTEENRAEN 792
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1838 (652.1 bits), Expect = 1.7e-304, Sum P(2) = 1.7e-304
Identities = 360/765 (47%), Positives = 492/765 (64%)
Query: 42 LKWAALEKLP-----TYNRL--RKGILTTSRGEAN-----EVDVYNLGLQERQRLIDKLV 89
L+WAA+ +LP T+N + R T + G A+ +DV L +R+ L+ + +
Sbjct: 38 LRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQAL 97
Query: 90 KVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFE 149
+D DN + L +K R+DRVG+++PK+EVR+E+LN+EA+ + ALP+ + + FE
Sbjct: 98 ATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNVSRDFFE 157
Query: 150 DILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVS 209
L+ LRII +K L ILKD+SG+IKPGR+TLLLGPP D +LK +
Sbjct: 158 RCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKT 217
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE-MLTELAR 268
G +TYNG ++++F +RT+AYISQ DNHI E+TVRETL F+ARCQG + + +L R
Sbjct: 218 GNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTR 277
Query: 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328
EK GI+P +ID +MKA + +G++ +V TDY LKVLGLDVC+DTMVG++M+RG+SGGQ
Sbjct: 278 LEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQ 337
Query: 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388
+KRVTTGEM VGP LFMDEISTGLDSSTTFQIV C+R +H+ T +++LLQPAPET
Sbjct: 338 RKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPET 397
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAH 448
+DLFDD+ILLS+G +VYQGPRE V+ FF S+GFR P RKGVADFLQEVTS+KDQ QYWA
Sbjct: 398 FDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWAD 457
Query: 449 KEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKAN 508
KPY+F+ V + A AF++ G +L PFDK + +AL + + E LK
Sbjct: 458 PSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGWENLKVC 517
Query: 509 ISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMV 568
RELLL+KR+ F+Y F+ Q+ FV +V T+FL+T++H + G + FF + +
Sbjct: 518 FVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLFFGLVHM 577
Query: 569 NFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628
FNGFSE+ + I++LPVFYKQRD F P W+++I SW+L++P S LE VW + Y+ VG
Sbjct: 578 MFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGVVYFTVG 637
Query: 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXR 688
+AGRFF+ LL V+QMA LFR +A R+MV+ANT +
Sbjct: 638 LAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLLGGFVIPK 697
Query: 689 EDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYW 748
DIK WW W +W SPL+Y Q AI NEF W + S T+G+ +LK R F ++YW
Sbjct: 698 ADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIGLNLLKLRSFPTNDYW 757
Query: 749 YWXXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQ 793
YW TLAL +L+P K RAV+ ++ NE+
Sbjct: 758 YWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDD--PNEE 800
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1812 (642.9 bits), Expect = 2.0e-303, Sum P(2) = 2.0e-303
Identities = 365/757 (48%), Positives = 492/757 (64%)
Query: 41 ALKWAALEKLPTYNRLRKGILT------TSRGEANEVDVYNLGLQERQRLIDKLVKVTDV 94
AL+WA +E+LPT R+R +L T +G VDV LG ER +I+KL+K +
Sbjct: 58 ALQWAEIERLPTVKRMRSTLLDDGDESMTEKGR-RVVDVTKLGAVERHLMIEKLIKHIEN 116
Query: 95 DNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA-FLASNALPSFIKFYTNIFEDILN 153
DN + L K++ RIDRVG++LP +EVRYE L V AE + ALP+ N + +L+
Sbjct: 117 DNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTL----WNTAKRVLS 172
Query: 154 YLRIIPSKKRH---LTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSG 210
L + K H + I+ DV+G+IKPGRLTLLLGPP + LK SG
Sbjct: 173 ELVKLTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSG 232
Query: 211 TVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
++YNGH +DEFVPQ+T+AYISQ+D HI EMTVRET+ FSARCQGVG+R +++ E+++RE
Sbjct: 233 EISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKRE 292
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
K GI PD ++D YMKAI+ EG + ++ TDY LK+LGLD+CA+ ++GD M RGISGGQKK
Sbjct: 293 KEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKK 352
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
R+TT EM+VGP ALFMDEI+ GLDSST FQIV L+Q HI+S T ++SLLQPAPE+YD
Sbjct: 353 RLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYD 412
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKE 450
LFDDI+L++ G+IVY GPR VL FF GFRCP+RKGVADFLQEV S+KDQ QYW H++
Sbjct: 413 LFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHED 472
Query: 451 KPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANIS 510
PY FV+V+ ++ F+ +G+KI D L P+D+SKSH+ AL+ Y + EL A IS
Sbjct: 473 LPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACIS 532
Query: 511 RELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF 570
RE LLMKRN FVYIFK Q+ A + MT+F+RT+M D + G + A FFA+ ++
Sbjct: 533 REYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDII-HGNSYMSALFFALIILLV 591
Query: 571 NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYD 630
+GF E+SMT +L VFYKQ+ F+P WAYAIP+ +LK+P+SF E VW LSYYV+GY
Sbjct: 592 DGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYT 651
Query: 631 SNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXRED 690
A RFFKQ+ LL V+ + ++FR +A + +V + T
Sbjct: 652 PEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPS 711
Query: 691 IKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYW 750
+ W KW +W +PL+Y + + NEFL W + Q ++ TLG +L++RG + Y YW
Sbjct: 712 MPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQM-QPNNFTLGRTILQTRGMDYNGYMYW 770
Query: 751 XXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEE 787
+TLALTFL RA+I+++
Sbjct: 771 VSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQD 807
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1817 (644.7 bits), Expect = 7.9e-300, Sum P(2) = 7.9e-300
Identities = 355/753 (47%), Positives = 491/753 (65%)
Query: 41 ALKWAALEKLPTYNRLRKGILTTSRGEANE-----VDVYNLGLQERQRLIDKLVKVTDVD 95
AL+WA +++LPT+ RLR L GE E VDV LG ER +I+KL+K + D
Sbjct: 24 ALQWAEIQRLPTFKRLRSS-LVDKYGEGTEKGKKVVDVTKLGAMERHLMIEKLIKHIEND 82
Query: 96 NERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA-FLASNALPSFIKFYTNIFEDILNY 154
N + L K++ R++RVG++ P +EVRYEHL VEA + ALP+ ++F D+L
Sbjct: 83 NLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVFLDLLK- 141
Query: 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTY 214
L + + + ++ IL DVSG+I PGRLTLLLGPP + LK G ++Y
Sbjct: 142 LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISY 201
Query: 215 NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
NGH ++E VPQ+T+AYISQHD HI EMT RET+ FSARCQGVG+R +++ E+++REK G
Sbjct: 202 NGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGG 261
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
I PDP+ID YMKAI+ +G + ++ TDY LK+LGLD+CA+T+VG+ M RGISGGQKKR+TT
Sbjct: 262 IIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQKKRLTT 321
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
EM+VGP ALFMDEI+ GLDSST FQI+ L+Q HI + T +SLLQPAPE+YDLFDD
Sbjct: 322 AEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDD 381
Query: 395 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYR 454
I+L+++G+IVY GPR+ VL+FF GF+CP+RKGVADFLQEV S+KDQ QYW H+ P+
Sbjct: 382 IVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHS 441
Query: 455 FVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELL 514
FV+V ++ F+ +G+KI + L P+D SK+H+ AL+ Y + K EL +A ISRE L
Sbjct: 442 FVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACISREFL 501
Query: 515 LMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS 574
LMKRN FVY+FK Q+ A++ MT+F+RT+M D + G + FFA ++ +G
Sbjct: 502 LMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDII-HGNSYMSCLFFATVVLLVDGIP 560
Query: 575 EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAG 634
E+SMT+ +L VFYKQ+ F+P WAYAIP+ +LKIP+SF E VW L+YYV+GY
Sbjct: 561 ELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPY 620
Query: 635 RFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKW 694
RFF+Q+ +L V+ + ++FR IA + V A T D+ W
Sbjct: 621 RFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGW 680
Query: 695 WKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXX 754
KW +W +P++YA+ + NEFL W+K Q ++ TLG +L+SRG +Y YW
Sbjct: 681 LKWGFWVNPISYAEIGLSVNEFLAPRWQKM-QPTNVTLGRTILESRGLNYDDYMYWVSLS 739
Query: 755 XXXXXXXXXXXAYTLALTFLDPFEKPRAVITEE 787
+TLAL+FL R +I+++
Sbjct: 740 ALLGLTIIFNTIFTLALSFLKSPTSSRPMISQD 772
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6843 | 0.9653 | 0.7842 | yes | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7191 | 0.9636 | 0.7768 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7058 | 0.9567 | 0.7701 | N/A | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6884 | 0.9740 | 0.7797 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1156 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-100 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-76 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-72 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-61 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-54 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 4e-49 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-44 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-43 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-41 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-39 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-37 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 8e-35 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-28 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-22 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-21 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-21 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-18 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-17 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 9e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-16 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-15 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-15 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-15 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-14 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-14 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-14 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-13 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-13 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-13 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-12 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 8e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-11 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-11 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 8e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-10 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-10 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-10 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-09 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-09 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-09 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 9e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 7e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-07 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 8e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 9e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 6e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 7e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 9e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 9e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 9e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-05 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-05 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 7e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 8e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 8e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 9e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 9e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 6e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-04 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 8e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 8e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.001 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.001 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.001 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.001 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 0.001 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.001 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.002 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 0.002 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.002 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.002 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.003 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.003 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.003 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.003 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.003 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.003 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.003 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.004 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.004 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.004 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1679 bits (4349), Expect = 0.0
Identities = 710/1156 (61%), Positives = 872/1156 (75%), Gaps = 18/1156 (1%)
Query: 11 STSLRRSASRWNTNSIGAFS-------RSSREEDDEEALKWAALEKLPTYNRLRKGILTT 63
S+ RS SR + N FS R+S ++DEEALKWAA+EKLPTY+RLR I+ +
Sbjct: 9 RRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKS 68
Query: 64 --------SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP 115
++ EVDV L +RQ+ ID + KV + DNE+FL K +NRIDRVGI LP
Sbjct: 69 FVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLP 128
Query: 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVI 175
VEVR+EHL VEA+ ++ S ALP+ NI E L L I +KK LTILKD SG+I
Sbjct: 129 TVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGII 188
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD 235
KP R+TLLLGPPSSGKTTLLLALAGKLDP+LKVSG +TYNG+ ++EFVP++T+AYISQ+D
Sbjct: 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND 248
Query: 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEA 295
H+G MTV+ETL FSARCQGVGTRY++L+ELARREK AGI P+ ++D++MKA A EG ++
Sbjct: 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKS 308
Query: 296 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355
++ITDY LK+LGLD+C DT+VGDEMIRGISGGQKKRVTTGEM+VGP LFMDEISTGLD
Sbjct: 309 SLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
Query: 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEF 415
SSTT+QIV CL+Q +H+ T ++SLLQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEF
Sbjct: 369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEF 428
Query: 416 FASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKIS 475
F S GF+CP+RKG ADFLQEVTS+KDQ QYWA + KPYR+++V EFAE F+SFHVG ++
Sbjct: 429 FESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488
Query: 476 DELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAV 535
+EL PFDKS+SH+AAL Y V K ELLKA +E LLMKRN+FVY+FK +QI VA
Sbjct: 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAA 548
Query: 536 VYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF 595
+ T+FLRT+MH DG ++ GA F++ + FNGF+E+++ I +LPVFYKQRD F
Sbjct: 549 IASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFH 608
Query: 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFR 655
PPW + +P+++L IP+S +E VWV ++YY +G+ A RFFKQ L+ + QMA+ +FR
Sbjct: 609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFR 668
Query: 656 FIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANE 715
IA R M++ANT G+ LL++ LGGFIL + +I WW+WAYW SPL+Y NA+ NE
Sbjct: 669 LIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728
Query: 716 FLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774
W K D+S LG VL F + WYW+G+GAL GF +L N +TLALT+L
Sbjct: 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYL 788
Query: 775 DPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSL 834
+P K +A+I+EE + + LS+ G++ + G + S
Sbjct: 789 NPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRD--SS 846
Query: 835 AEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPG 894
EA K+GMVLPF P +++FD+V Y VDMP EMK QGV ED+L LL V+GAFRPG
Sbjct: 847 LEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG 906
Query: 895 VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 954
VLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP
Sbjct: 907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSP 966
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014
VT+ ESL++SA+LRL EV E + MF+DEVMELVEL+ L+ ++VGLPGV+GLSTEQRK
Sbjct: 967 QVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1074
RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA
Sbjct: 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1086
Query: 1075 FDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA 1134
FDEL LMKRGGQ IY GPLGR+S +I YFEAIPGV KIK+ YNPATWMLEVS+ + E+
Sbjct: 1087 FDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVK 1146
Query: 1135 LGIDFTEHYKRSDLYR 1150
LGIDF EHYK S LY+
Sbjct: 1147 LGIDFAEHYKSSSLYQ 1162
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 954 bits (2467), Expect = 0.0
Identities = 334/1112 (30%), Positives = 515/1112 (46%), Gaps = 127/1112 (11%)
Query: 95 DNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDIL 152
+ + ++ + ID I K+ V Y++L+ A S+ P+F I
Sbjct: 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTRGF 62
Query: 153 NYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK-VSGT 211
L+ + ILK + G+IKPG LT++LG P SG +TLL +A D V G
Sbjct: 63 RKLKK-FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121
Query: 212 VTYNGHDMDEFVPQRTA--AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
+TY+G +E Y ++ D H +TV ETL F+ARC+ R + ++
Sbjct: 122 ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYA 181
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
+ I D Y+ GL +T VG++ +RG+SGG++
Sbjct: 182 KH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
KRV+ E +G A D + GLDS+T + + L+ + +I T ++++ Q + + Y
Sbjct: 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAY 275
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHK 449
+LFD +I+L +G +Y GP + ++F MGF+CP R+ ADFL +TS +RQ
Sbjct: 276 ELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGY 334
Query: 450 EKP-YRFVTVQEFAEAFQSFHVGQKISDELRTPFDK---------------SKSHRAALT 493
EK R T QEF +++ ++ E+ D+ +K +
Sbjct: 335 EKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRP 392
Query: 494 TETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553
+ Y V +K ++R L MK N +F + +A++ ++F +
Sbjct: 393 SSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYS 452
Query: 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSF 613
G GA FFAI F+ EI+ P+ K R + + P A AI S I +IP
Sbjct: 453 RG---GALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKI 509
Query: 614 LEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSF 673
+E V+ + Y++V + AGRFF +L S LFR I + + A T +
Sbjct: 510 IESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569
Query: 674 ALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ----DSS 729
LL L GF + R + W KW Y+ +PL YA +++ NEF G ++
Sbjct: 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGY 629
Query: 730 ETLGVQ---------------VLKS---RGFFAHEY-WYWLGLGALFGFVLLLNFAYTLA 770
+ LGV V + F + W G + GF + F Y L
Sbjct: 630 DNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILL 689
Query: 771 LTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQ 830
F ++ ++ + + + G T + + +DI
Sbjct: 690 TEFNKGAKQKGEILVFR-RGSLKRAKKAG-------------ETSASNKNDI-------- 727
Query: 831 SLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKV-----------QGVLED 879
+ G VL + D+V DM +E + ++
Sbjct: 728 -------------EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKE 774
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 939
K V+LN V G +PG LTALMG SGAGKTTL++VLA R T G ITG + +F
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R GY +Q D+H P T+ ESL FSA+LR V + +++EV++L+E+ ++
Sbjct: 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV 894
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
VG+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+
Sbjct: 895 VGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQ 953
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYN 1118
++CTIHQPS +FE FD L L+++GGQ +Y G LG +S +I+YFE G K + N
Sbjct: 954 AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDAN 1012
Query: 1119 PATWMLEVSAASQELALGIDFTEHYKRSDLYR 1150
PA WMLEV A+ D+ E ++ S Y+
Sbjct: 1013 PAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQ 1044
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 315 bits (809), Expect = e-100
Identities = 112/239 (46%), Positives = 141/239 (58%), Gaps = 47/239 (19%)
Query: 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 912
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 913 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSP +T+ E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 264 bits (676), Expect = 3e-76
Identities = 161/644 (25%), Positives = 296/644 (45%), Gaps = 74/644 (11%)
Query: 148 FEDILNYLRIIPSKKRH-LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL 206
++ +++ LR ++R +LK+VSGV KPG L ++G +GKTTL+ ALA + +
Sbjct: 20 WKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV 79
Query: 207 KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266
K SG+V NG +D + +AY+ Q D I +TVRE L F A M +
Sbjct: 80 KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQA-------HLRMPRRV 132
Query: 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE-MIRGIS 325
++EK + V+ LGL CA+T +G ++G+S
Sbjct: 133 TKKEKRERVD-------------------EVLQA-----LGLRKCANTRIGVPGRVKGLS 168
Query: 326 GGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
GG++KR+ E++ P L LF DE ++GLDS + +V L+ + T + ++ QP
Sbjct: 169 GGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIHQP 226
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQ 444
+ E ++LFD IIL+++G++ Y G + + FF+ +G CP+ ADF +V + +
Sbjct: 227 SSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE 286
Query: 445 YWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKS------------HRAAL 492
+ +++ ++F +G+ + K+ + A+
Sbjct: 287 -----NESRE--RIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW 339
Query: 493 TTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552
T+ Y + KR L ++ R+ LL+K +LIQ A++ ++L + + V
Sbjct: 340 WTQFYALLKRSWL--SVLRDPLLLK-------VRLIQTMMTAILIGLIYLGQGLTQKGVQ 390
Query: 553 DGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
+ GA F +T + F N F I++ A+LPVF ++ + AY + I ++P+
Sbjct: 391 NIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
+ A++ ++Y+++G S A F L+ V +A++ I+ + +A T G
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
++ L GGF ++ + I ++KW + S Y ++ N++ + T ++
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTG 567
Query: 732 L----GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLAL 771
G +L++ F + +L L L + AL
Sbjct: 568 PCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 3e-72
Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 45/237 (18%)
Query: 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
+L+F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 915 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 974
AGR+TG ++G + I+G P + +F +I GY Q+DI P +T+ E+L+F+A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 975 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 2e-61
Identities = 97/252 (38%), Positives = 149/252 (59%), Gaps = 9/252 (3%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQETFAR 941
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
IS Y +Q+D+ P +T+ E L+F A LR+ V + ++ +DEV++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 1002 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPA 1120
+CTIHQPS ++FE FD++ LM G+ Y+G + +F + G + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFSDL-GHP-CPENYNPA 272
Query: 1121 TWMLEVSAASQE 1132
+ ++V A
Sbjct: 273 DFYVQVLAVIPG 284
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 3e-54
Identities = 80/210 (38%), Positives = 123/210 (58%), Gaps = 6/210 (2%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFAR 941
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
Y Q+DI P +T+ E+L ++A LRL P S+ + E + L +L R +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTR---IG 137
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1062 CTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
TIHQP D+F FD + L+ G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 4e-49
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 503 ELLKANISRELLLMKRNSFV-YIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561
LKA + RE L R+ + +++LIQ +A+V+ T+F DT G G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 562 FFAITMVNFNGFSEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 620
FF+I F+ + IS I + V ++ + P AY + ++++P+S L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 680
+ Y++VG + RFF +LL AS L FIA + A+ G LL LL
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 681 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716
L GF + + + W +W Y+ +PLTYA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 9e-44
Identities = 162/650 (24%), Positives = 256/650 (39%), Gaps = 120/650 (18%)
Query: 104 KNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKR 163
KN I+ G L ++ E +V E + + I + N L Y + KK
Sbjct: 724 KNDIEA-GEVLGSTDLTDESDDVNDEKDMEKES-GEDIFHWRN-----LTY--EVKIKKE 774
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE-F 222
IL +V G +KPG LT L+G +GKTTLL LA ++ + G NG +D F
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
QR+ Y+ Q D H+ TVRE+L FSA R+ K+
Sbjct: 835 --QRSIGYVQQQDLHLPTSTVRESLRFSAYL--------------RQPKSVSKS------ 872
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGP 341
E + +K+L ++ AD +VG G++ Q+KR+T G E++ P
Sbjct: 873 -----------EKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKP 920
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-SLLQPAPETYDLFDDIILLSD 400
L LF+DE ++GLDS T + I +R+ + G A++ ++ QP+ ++ FD ++LL
Sbjct: 921 KLLLFLDEPTSGLDSQTAWSICKLMRKLA--DHGQAILCTIHQPSAILFEEFDRLLLLQK 978
Query: 401 G-QIVYQGP----RELVLEFFASMGFR-CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYR 454
G Q VY G ++ +F G CP+ A+++ EV AH
Sbjct: 979 GGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPG----AHAN---- 1030
Query: 455 FVTVQEFAEAFQSFHVGQKIS---DELRTPFDKSKSHRAALTTETYGVGKRELLKANISR 511
Q++ E +++ Q + D L K++ Y
Sbjct: 1031 ----QDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA------------ 1074
Query: 512 ELLLMKRNSFVYIFKLIQIAFVAVVYMTL-FLRTKMHKDTVTDGGIFAGATFFAITMVNF 570
S Y FKL+ + T +L +K +F G TFF + +
Sbjct: 1075 --------SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIF--AALFIGFTFFKVGT-SL 1123
Query: 571 NG-----FSEISMTI-------AKLPVFYKQRDF--------RFFPPWAYAIPSWILKIP 610
G F+ T+ LP F QRD R F A+ ++IP
Sbjct: 1124 QGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIP 1183
Query: 611 VSFLEVAVWVFLSYYVVGYDSNA-------GRFFKQYALLLGVNQMASALFRFIAVTGRN 663
+ + ++ F+ YY VG+ NA R + L S L + + N
Sbjct: 1184 YNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPN 1243
Query: 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 713
A S + LS G + + +W + Y CSP TY A+++
Sbjct: 1244 ADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 2e-43
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 13/217 (5%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 936
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R GY Q P +T+ E+L F A L + ++E R I+E++EL L
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093
G + + E D + ++ G I G
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKI-IAEGTP 221
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 38/242 (15%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
IL DVS ++ G++ +LG SGKTTLL A++G+++ SG + +NG Q+
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
AY+ Q D + +TVRETL ++A + R+ + I+ DV ++
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVEDVLLR 129
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALAL 345
A T +G +++GISGG+++RV+ +++ P + L
Sbjct: 130 D-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-L 165
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405
+DE ++GLDS T +V+ L Q N ++++ QP + + LFD I+LLS G+IVY
Sbjct: 166 ILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSGEIVY 224
Query: 406 QG 407
G
Sbjct: 225 SG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 4e-39
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
G+E +RGISGG++KRV+ E +V A L D + GLDSST +I+ C+R + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 5e-39
Identities = 91/292 (31%), Positives = 163/292 (55%), Gaps = 26/292 (8%)
Query: 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLV-----------------LLNGVSGAFRPGV 895
P +L F +V Y V E MK +G +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
+ A++G SG+GK+TL++ LAGR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015
+T+ E+L+F + LRL + + + + + V+ + L +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1076 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVS 1127
D + ++ G+ ++ G G + ++YFE++ NPA ++L+++
Sbjct: 275 DSVLVLSE-GRCLFFGK-GSDA---MAYFESVGFSPSFP--MNPADFLLDLA 319
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 1e-37
Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 51/298 (17%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
T L VS ++PG + LLGP +GKTTLL LAG L PT SG + G+D+
Sbjct: 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDV 69
Query: 220 DEFVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + R Y+ Q + E+TVRE L F AR G+
Sbjct: 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS-------------------- 109
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
+EA + L++ GL+ ++ +R +SGG K+R++
Sbjct: 110 --------------KEEAEERIEELLELFGLE-----DKANKKVRTLSGGMKQRLSIALA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS--LLQPAPETYDLFDDI 395
++ L +DE ++GLD + +I LR+ T ++S +L+ E +L D +
Sbjct: 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRV 207
Query: 396 ILLSDGQIVYQGPRELVLEFFASMGFRC--PKRKGVADFLQEVTSRKDQRQYWAHKEK 451
I+L+DG+I+ +G E + E F G P+R +A+ L+ + K + + E
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEA 265
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 7e-37
Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 155 LRIIPSKKRH----LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG 210
R I + ILKD SGV+KPG + L+LG P SG +TLL ALA + + + V G
Sbjct: 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG 65
Query: 211 TVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255
+ YNG EF Y+S+ D H +TVRETL F+ RC+G
Sbjct: 66 DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 8e-35
Identities = 157/673 (23%), Positives = 299/673 (44%), Gaps = 121/673 (17%)
Query: 148 FEDILNYLRIIPSKKRH-------LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200
F+D+ NY +P++ + L +L++V+G +PG LT L+G +GKTTL+ LAG
Sbjct: 870 FDDV-NYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928
Query: 201 KLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRY 260
+ + G + +G + R + Y Q+D H ++TVRE+L +SA +
Sbjct: 929 RKTGGY-IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR------ 981
Query: 261 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320
+ E+++ EK + D ++++ LD D +VG
Sbjct: 982 -LPKEVSKEEKM------------------------MFVDEVMELVELDNLKDAIVGLPG 1016
Query: 321 IRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAV 378
+ G+S Q+KR+T E++ P++ +FMDE ++GLD+ ++ +R + ++G T V
Sbjct: 1017 VTGLSTEQRKRLTIAVELVANPSI-IFMDEPTSGLDARAAAIVMRTVRNTV--DTGRTVV 1073
Query: 379 ISLLQPAPETYDLFDDIILLS-DGQIVYQGP----RELVLEFFASM-GF-RCPKRKGVAD 431
++ QP+ + ++ FD+++L+ GQ++Y GP ++E+F ++ G + ++ A
Sbjct: 1074 CTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQK---ISDELRTPFDKSKSH 488
++ EV+S + + +FAE ++S + Q+ + EL TP +
Sbjct: 1134 WMLEVSSLAAEVKLGI------------DFAEHYKSSSLYQRNKALVKELSTPPPGASDL 1181
Query: 489 RAA--LTTETYGVGKRELLKA----------NISRELLLMKRNSFVYIFKLIQIAFVAVV 536
A + T+G K L K N+ R + F L A++
Sbjct: 1182 YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVR-----------FFFTLA----AALM 1226
Query: 537 YMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIA-KLPVFYKQRDFRFF 595
T+F + + D + GA + A+ V N S + +A + VFY++R +
Sbjct: 1227 VGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMY 1286
Query: 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFR 655
YAI + +IP ++ + + Y +V ++ A +FF Y ++ + F
Sbjct: 1287 SALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYF----ISFFSFLYFT 1342
Query: 656 F-----IAVTGRNMVVANTFGS--FALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708
+ +++T N VA F + + L L S GF + R I KWW W YW P+ +
Sbjct: 1343 YYGMMTVSLT-PNQQVAAIFAAAFYGLFNLFS--GFFIPRPKIPKWWVWYYWICPVAWTV 1399
Query: 709 NAIVANEFLGHSWKKFTQDSSETLGVQV-LKSRGFFAHEYWY---WLG--LGALFGFVLL 762
++ +++ +D+ + G + + Y Y ++G L GF +
Sbjct: 1400 YGLIVSQY------GDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVF 1453
Query: 763 LNFAYTLALTFLD 775
F + + L+
Sbjct: 1454 FAFIFAFCIRTLN 1466
|
Length = 1470 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (353), Expect = 4e-34
Identities = 131/534 (24%), Positives = 246/534 (46%), Gaps = 64/534 (11%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
TIL V+G+ PG + +LGP SGK+TLL ALAG++ +GT+ N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
RT +++Q D +TVRETL F + L L +
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCS-----------LLRLPK----------------- 171
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALA 344
+ QE ++ + + LGL C +T++G+ IRGISGG++KRV+ EM++ P+L
Sbjct: 172 ---SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE ++GLD++ +++V L T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 405 YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEA 464
+ G + +F S+GF ADFL ++ + Q + +EKP Q +
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVAS 343
Query: 465 FQSFHVGQ-KISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKR----- 518
+ + + K + E+ + + +T+ + R + ++ +L++R
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 519 --NSF--VYIFKLIQIAFVAVVYMTLFLRTKMHKD--TVTD--GGIFAGATFFAITMVNF 570
SF + +F++I A +A + H D V D G +F + F+ + F
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMW-------WHSDFRDVQDRLGLLFFISIFWGV----F 452
Query: 571 NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYD 630
F+ + + + +F K+R + +Y + + +P+ + +++ ++Y++ G
Sbjct: 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512
Query: 631 SNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGF 684
G F +LLG ++ L + + A+T + +L + GGF
Sbjct: 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 3e-33
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 38/219 (17%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKK 935
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
+ E + Y + D+H P +T+ E+L F+ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1054 VD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
D T +++Q S +I++ FD++ ++ G++IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 20/206 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA- 940
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 941 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
+ GYC Q D +T+ E L F A L+ P+ K ++ ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1060 VVCTIHQPSIDIFEAF-DELFLMKRG 1084
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 5e-30
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 150 DILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS 209
L K +LK+VSG KPG LT ++GP +GK+TLL ALAG+ L VS
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG-LGVS 65
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
G V NG +D+ ++ Y+ Q D +TVRETL F+A+ +G+
Sbjct: 66 GEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 939
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 940 ARISGYCEQNDIHSP---FV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
R G QN P F T+ E + F PE + E R ++E +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G+T++ H + E D + +++ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 936
K L+GVS PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ R GY Q P T+ E L + AWL+ + S+ K +DEV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-28
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W K S+ETLG VLKSRG F YWYW+G+GAL GF +L N +TLALT+L+P K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 781 RAVI 784
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L VS +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 942 ISGYCEQN---DIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNPLR 996
I GY Q D P +++ + +L + L + + +DE +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELA 126
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 127 DRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T++ H + + E FD + L+ R
Sbjct: 182 GMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 29/216 (13%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQET 938
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 939 FARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVEL 992
A+ Y Q+ +T+YE +L + R S E + ++E +EL+ L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-----VEEALELLGL 128
Query: 993 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 1053 -TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
+ G TVV +H D+ A D L L+K G
Sbjct: 184 LNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 7e-23
Identities = 72/261 (27%), Positives = 109/261 (41%), Gaps = 62/261 (23%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KK + D+S + G + LLG +GKTT L L G+L PT SGT NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 221 EFVPQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
E + L+VLGL A+ +SGG K++++
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDL 391
++G L +DE ++GLD ++ I + + + G ++I S+ E L
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEAL 198
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D I ++SDG++ G P+EL
Sbjct: 199 CDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 7e-22
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 937 ETFAR---ISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
R I G+ Q+ + P +T E++ L L+ E R+ EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAGVPKKERRER----AEELLE 126
Query: 992 LNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1047 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
M +R + G T+V H P ++ E D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 7e-22
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1056 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
G+TVV +H ++ D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 1e-21
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
L D+S IK G L++GP SGK+TLL L G L PT SG V +G D+ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GP 341
+E + L+++GL+ D +SGGQK+RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDI 395
+ L +DE + GLD + +++ L++ + G +I LL +L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSDGQ 402
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-21
Identities = 75/256 (29%), Positives = 114/256 (44%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL D+S I G +T +LGP SGK+TLL LAG L P SG V +G D+ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ +E I + L++LGL+ AD V + +SGG+++RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
LA L +DE ++ LD + +++ LR ++ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSDGQIVYQGPRELVL 413
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-21
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 148 FEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK 207
+++ LNY +P K +L ++SG +KPG LT L+G +GKTTLL LAG+
Sbjct: 6 WKN-LNY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGV 61
Query: 208 VSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259
++G + NG +D+ QR+ Y+ Q D H +TVRE L FSA +G+
Sbjct: 62 ITGEILINGRPLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 2e-21
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 939
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R GY + +T+ E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1060 VVCTIHQPSIDIFEAFDELFLMKRG 1084
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 5e-21
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
+ L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ R G Q+ P +T+ E++ F LR P+ + R + E++ELV L L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGL 123
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1054
LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 1055 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
+ G T + H D EA D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 6e-21
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 51/207 (24%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
LN VS G + AL+G SG+GK+TL+ +AG G +I I G E
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG----SILIDG-----EDLTD 66
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
+ V + LF L+ V+E + L
Sbjct: 67 LEDELPPLRRRIGMV-FQDFALFP---HLT--------------VLENIAL--------- 99
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 1060
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G TV
Sbjct: 100 -----GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154
Query: 1061 VCTIHQPSIDIFEAF---DELFLMKRG 1084
V H D+ EA D + +++ G
Sbjct: 155 VLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 7e-21
Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 19/209 (9%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 943 SGYCEQNDIHSPF-----VTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 995
GY Q S +T+ + +L + + ++ + ++ +DE +E V + L
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDL 132
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
R +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 133 RDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G+TV+ H + + FD + + R
Sbjct: 188 EGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 2e-20
Identities = 35/87 (40%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
+RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ LR+ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
+ QP+ E ++LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-20
Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--- 934
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 935 KQETFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
E + + + QN P++ TI E++L + P+ E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENILLAR-----PDASDEE----IIAALDQAG 435
Query: 992 LNPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
L GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
++ ++ +TV+ H+ D +A D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 3e-20
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 18/222 (8%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936
+ L VS G L+G +G+GK+TL+ +L G +G + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 937 ET----FARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
E + G QN F T+ + + F L E + + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEE-RVAEALELVG 127
Query: 992 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 1052 NTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
+ G+T++ H + E D + ++ G+ + G
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-20
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 31/213 (14%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
+L+ +S G + AL G +GAGKTTL +LAG +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 941 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID-EVMELVELNPLRQS 998
+ GY Q+ D ++ E LL L+ + + + D ++ L E +PL
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAETVLKDLDLYALKERHPL--- 125
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 126 --------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK 177
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
V+ H D FL K + + +
Sbjct: 178 AVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 928
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 929 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFID 984
++ +K+ + + G+ QN + P +T+ E++ + + RK +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
E++E++ L S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1045 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
V+ +R + G+T++ H P ++ + D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-19
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 942 IS-GYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
G Q+ + + + + + F L L R+ + E + V + LR+
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVGASGLRE 122
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
LS ++KR+ IA + P ++ +DEPT+GLD ++ +R G
Sbjct: 123 RPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177
Query: 1058 RTVVCTIH 1065
TVV + H
Sbjct: 178 MTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 4e-19
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQ---E 937
+L +S PG A++G SG+GK+TL+ +L G Y G I + G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543
Query: 938 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVEL 992
+ R GY Q+ PF+ +I E++ +PE E + E +E
Sbjct: 544 SLRRQVGYVLQD----PFLFSGSIRENIALG-----NPEATDEEIIEAAQLAGAHEFIEN 594
Query: 993 NPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
P+ + VG G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 595 LPMGYDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ GRTV+ H+ S + D + ++ +G
Sbjct: 654 -QILQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 6e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1065 HQPSIDIFEAFDELFLMKRG 1084
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--K 934
++GV+ R G + +G +GAGKTT + +L R T G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
+ R G Q +T E+L L P+ ++E R +E++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 1055 DTGRTVVCTIH 1065
+ G T++ T H
Sbjct: 172 EEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 49/275 (17%)
Query: 808 GSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKK-KGMVLPFEPHSLTFDEVVYSVD 866
G+ H G +++++L A RP K V SL F V +
Sbjct: 281 GAQYHARADG--------VAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVA-- 330
Query: 867 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
+ L VS PG AL+G SGAGK+TL+++L G T G I
Sbjct: 331 ----------YPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 925 -GNITISGYPKKQETFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRK 980
+ ++ +++ + Q+ PF+ TI E++ + P+
Sbjct: 381 VNGVPLADAD--ADSWRDQIAWVPQH----PFLFAGTIAENIRLAR-----PDASDAE-- 427
Query: 981 MFIDEVMELVELNPLRQSL-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
I E +E L+ +L GL G +GLS Q +RL +A + + ++ +DEP
Sbjct: 428 --IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
T+ LDA A V+ +R + GRTV+ H+ ++
Sbjct: 486 TAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 5e-18
Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 50/254 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
LKDVS I+ G LL+GP SGK+TLL L G L PT SG V +G D
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75
Query: 225 --QRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ + Q+ D+ + TV + +AF G+ RE+
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-----------PREE---------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVG 340
++ E L+++GL+ D +SGGQK+RV G + +G
Sbjct: 115 ---IEERVAE----------ALELVGLEELL-----DRPPFNLSGGQKQRVAIAGVLAMG 156
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P + L +DE + GLD +++ L++ + G +I + + D +++L D
Sbjct: 157 PEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214
Query: 401 GQIVYQGPRELVLE 414
G+I+ G +
Sbjct: 215 GKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 7e-18
Identities = 68/284 (23%), Positives = 110/284 (38%), Gaps = 75/284 (26%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S IK G L LLGP +GK+TLL +AG P +G + NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ ++ D +G MTV + +AF + + E +E R + +
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-- 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L + + D +SGGQ++RV
Sbjct: 122 ------------------------------LRLVQLEGLADRYPAQLSGGQRQRVA---- 147
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ ALA L +DE LD+ ++ LR+ +H G + + E +L
Sbjct: 148 -LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK-LHDRLGVTTVFVTHDQEEALELA 205
Query: 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
D +++L+ G+I GP + V + P + VA FL EV
Sbjct: 206 DRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 55/254 (21%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+ LK VS I+ G ++GP SGK+TLL L G PT SG V +G D
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTD 67
Query: 219 MDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
+ + + AA ++ Q N + ++T E + GV + RRE+
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-------ERRER 120
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A + L+ +GL + E+ SGGQ++R
Sbjct: 121 AEEL---------------------------LERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 332 VTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
V + P + + DE TG LDS T +++ LR+ ++ +GT ++ ++ PE
Sbjct: 149 VAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELA 204
Query: 390 DLFDDIILLSDGQI 403
+ D II L DG+I
Sbjct: 205 EYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 939
+ GVS R G + L+G +GAGKTT + +L + T G T++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G Q+ +T +E+L A L V R+ IDE+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1058
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1059 TVVCTIHQPSIDIFEA---FDELFLMKRG 1084
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 940
L+GVS PG A++G SG+GK+TL+ LAG + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
R C Q D H T+ E+L + P+ E + +E V L ++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 1001 -GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 1055 DTGRTVVCTIHQP 1067
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 2e-17
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 936
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 937 ------ETFARISGYCEQNDIHSPF--VTIYESLL--------FSAWLRLSPEVDSETRK 980
TF Q F +T+ E+++ L + + E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 981 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
+E++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1041 RAAAIVMRTVRNTVDTGRTVV 1061
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 937
+L GV R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 938 TFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 992
R G Q + + T++E++ F LR E ++ +E+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 993 NPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+ VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 ---KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1048 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+R+ G T + H F D + ++ G
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA- 940
++GVS +PG +T L+G +GAGKTT + +LAG G T+ G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 941 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G+ + +T E+L + A L + + ++E+ + + + L
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR 133
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 1060 VVCTIH 1065
++ + H
Sbjct: 189 ILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-17
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 41/243 (16%)
Query: 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 913
+ F V +S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 914 LAG--RKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970
LAG + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 971 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLP---------GVSGLSTEQRKRLTIAVE 1021
P D E ++ EL + + P GLS QR+ + +A
Sbjct: 103 -PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D + +M
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVM 211
Query: 1082 KRG 1084
G
Sbjct: 212 DSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
GY Q D P++T+ +++ L L +E R + EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 1002 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1055
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 1105
TG+TV+ H DI EA +FL + V L +++ E
Sbjct: 181 TGKTVLLVTH----DIDEA---VFL----ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-17
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGN-ITISGYPKKQETFA 940
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G Q+ P +YE++ F+ L ++ E RK V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRK----RVPAALELVGLSHKH 130
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1060 VVCTIHQPSI 1069
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 79.3 bits (197), Expect = 6e-17
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 939
+L VS +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
+ Y Q + LFS +R + +
Sbjct: 75 RKNIAYVPQ-----------DPFLFSGTIR--------------ENI------------- 96
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 97 --------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 1060 VVCTIHQPSIDIFEAFDELFLMKRG 1084
V+ H+ S D + ++ G
Sbjct: 148 VIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 9e-17
Identities = 70/268 (26%), Positives = 102/268 (38%), Gaps = 69/268 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+LK V ++ G + ++GP SGK+TLL + G L P SG V +G D+
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
R + Q +TV E +AF R T L+ E
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR---------EHTRLSEEE--------- 112
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
++ I E L+ +GL D + +SGG KKRV
Sbjct: 113 -----IREIVLEK----------LEAVGLRGAEDLYPAE-----LSGGMKKRV------- 145
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
ALA L DE + GLD + I + L +++ G I + +
Sbjct: 146 --ALARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFA 202
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFAS 418
+ D I +L DG+IV +G E E AS
Sbjct: 203 IADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 9e-17
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 27/224 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 938
L ++ PG A++G SGAGK+TL+ + + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 939 FARISGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMEL 989
RI G Q+ +T+ E++L + + L E D E ++ V L
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-GL 135
Query: 990 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
+ R LS Q++R+ IA L P +I DEP + LD + + VM
Sbjct: 136 ADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187
Query: 1050 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
++ + G TV+ +HQ +D+ + + + + + G+ ++ G
Sbjct: 188 LKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 33/205 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 940
L VS + PG AL+G SGAGK+TL+ L G T G + + T I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 941 RI-SGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMELV 990
R G Q +++ E++L + + L P+ + + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALAAL 129
Query: 991 ELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
E VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 130 ER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1046 VMRTVRN-TVDTGRTVVCTIHQPSI 1069
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 21/207 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGYPKKQE---T 938
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
AR+ +Q + +++ ++L + A L ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1057
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1058 RTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+V+ H +D EA D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-16
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 29/237 (12%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
R G Q+ P +T+ E++ F L++ ++ K ++E +ELV L
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1054
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1055 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGPLGRHSCHLI 1101
+ G T V H D EA D + +M G +EIY P R I
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 940
L V+ G + A++G SGAGK+TL+ L G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 993
R G Q P +++ E++L S W L E + +D L +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA---LERVG 136
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 1051
L ++ S LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 137 ILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
N D G TV+ +HQ +D+ + + + + + G+ ++ GP
Sbjct: 194 NQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 72/257 (28%), Positives = 104/257 (40%), Gaps = 62/257 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
++DVS + G +T LLG +GKTTLL +A L P SG VT +G D R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRD 69
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+++ + IG +T RE L + AR L L+R+E A I
Sbjct: 70 PSFVRR---KIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
A + K L L D VG S G K++V
Sbjct: 115 -----------------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE ++GLD T + + ++Q N G AVI E L D +I+
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL--KNEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 398 LSDGQIVYQGPRELVLE 414
L G++V +G E +
Sbjct: 206 LHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
I E + P +T E+L A L + IDEV+++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1062 CTIHQ 1066
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 76/258 (29%), Positives = 113/258 (43%), Gaps = 55/258 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
LKDVS I PG L+GP +GK+TLL L G ++PT SG+V +G D+++ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 226 --RTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPD 278
R I Q N I ++V E + L RR +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------LGRRSTWRSLFGLF 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-M 337
P + K A L+ +GL A D++ SGGQ++RV +
Sbjct: 118 PKEE---KQRALA----------ALERVGLLDKAYQRA-DQL----SGGQQQRVAIARAL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDL----F 392
M P L L DE LD +++ Q+++ L++ I+ G T ++SL Q DL
Sbjct: 160 MQQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYA 212
Query: 393 DDIILLSDGQIVYQGPRE 410
D I+ L DG+IV+ GP
Sbjct: 213 DRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 73/273 (26%), Positives = 115/273 (42%), Gaps = 60/273 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKDV+ I+ G +LLGP GK+TLL +AG +PT SG + +G D+ + P+
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 226 -RTAAYISQHD---NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
R A + Q+ H MTV E +AF + +GV E+ +R K
Sbjct: 74 KRGIAMVFQNYALYPH---MTVYENIAFGLKLRGVPKA-----EIDKRVKEV-------- 117
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
K+LGL+ + +SGGQ++RV +V
Sbjct: 118 ---------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARALVRK 151
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+DE + LD+ + + + + +H GT I + E L D I++++DG
Sbjct: 152 PKVFLLDEPLSNLDAKLRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDG 210
Query: 402 QIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+I G P EL + P VA F+
Sbjct: 211 RIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 5e-16
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 939
VL +G+S G L G +G+GKTTL+ ++AG G I + G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDV 71
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
A Y + P +T+ E+L F A E+D I +E V L PL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL---- 120
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 1060 VVCTIHQPSIDIFEA 1074
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 6e-16
Identities = 71/273 (26%), Positives = 109/273 (39%), Gaps = 54/273 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L DV+ + G L LLGP SGK+TLL +AG P SG + NG D +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R ++ QH +TVR+ +AF E+ + KA
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK----------- 106
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+KA E L+++ L +GD +SGGQ++RV +
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE LD+ ++ + LR+ T V + E ++ D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G P E+ + P V FL EV
Sbjct: 211 QIGSPDEV---------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 9e-16
Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 72/266 (27%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTY 214
+I + LKDV+ I+ G ++GP SGK+T LL L G LD PT SG V
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPT---SGEVLI 64
Query: 215 NGHDMDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267
NG D+ + + A ++ Q+ N + ++TV E + G
Sbjct: 65 NGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-------- 116
Query: 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327
RR++AA + L+VLGL+ + +SGG
Sbjct: 117 RRKRAA--------------------------EELLEVLGLEDRLL----KKKPSELSGG 146
Query: 328 QKKRVTTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVI-- 379
Q++RV + AL + DE TG LDS T +++ LR+ ++ G +I
Sbjct: 147 QQQRV-----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMV 199
Query: 380 --SLLQPAPETYDLFDDIILLSDGQI 403
PE D +I L DG+I
Sbjct: 200 THD-----PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 17/219 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
G+ Q+ P +T+ +++ F +R ++E R ++E++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-VEELLRLVQLEGLADR--- 133
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1060
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGP 1092
V H + E D + ++ +G E+Y P
Sbjct: 192 VFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 1e-15
Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 42/274 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
R QN P +T+YE++ F LR P+ + + R + EV +L+ L L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 1058
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 1059 TVVCTIHQPSIDIFEA---FDELFLMKRGG-------QEIYVGPLGRHSCHL-ISYFEAI 1107
T + H D EA D + +M G E+Y +L ++ F
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDGRIQQVGTPLELY-----ERPANLFVAGFIGS 236
Query: 1108 PGVQKIKDGYNPATWMLEVSAASQELA----LGI 1137
P + +K L + + LGI
Sbjct: 237 PPMNFLKAEVKADGNGLSIPEDKKVALEQVILGI 270
|
Length = 338 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ETFARISGYCE 947
+T + G SGAGK+TL+ +AG + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 948 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007
Q P + + E+L F R D ++ +DE+++L+ L+ L +
Sbjct: 82 QQYALFPHLNVRENLAFGL-KRKRNRED----RISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1066
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 1067 PSIDIFEAF---DELFLMKRG 1084
S EA D + +M+ G
Sbjct: 192 LS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 74/271 (27%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
P+ + L DVS IK G L+G SGK+TL A+ G L PT SG++ ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGK 67
Query: 218 DMDEFVPQ------RTAAYISQHDNHIGE----MTVRETLAFSARCQGVGTRYEMLTELA 267
D+ + + + + Q + + MT+ E +A R G ++ E + A
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQ--DPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR-KEA 124
Query: 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327
G+ + V + +SGG
Sbjct: 125 VLLLLVGVGLPEE-----------------------------------VLNRYPHELSGG 149
Query: 328 QKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI--- 379
Q++RV + ALA L DE ++ LD S QI++ L++ + G ++
Sbjct: 150 QRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFIT 203
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 204 HDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 937
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 938 TFARIS-GYCEQNDIHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
F R GY QN F T+ E+L L+ E R+ E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREKKK-EALEKVG 123
Query: 992 LN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
LN L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 1051 RNTVDTGRTVVCTIHQPSI 1069
D G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFAR--IS 943
VS G +T L+G +GAGKTTL+ ++A +G +TI G + +F R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
+ +++ +T E+L + A L + + R I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG-- 132
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 1064 IH 1065
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 3e-15
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L D+S ++PG LLGP GKTTLL +AG P SG + +G D+ P
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q +TV E +AF + +GV E+ R +
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L+++GL+ + + +SGGQ++RV + P+L
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD+ ++ L++ + G I + E L D I ++++G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 37/203 (18%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 936
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 937 ------ETFARISGYCEQNDIHSPFVTIYESLL--------FSAWLRLSPEVDSETRKMF 982
TF Q P +T+ E++ S L E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR- 127
Query: 983 IDEVMEL---VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ EL V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 128 -ERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181
Query: 1040 ARAAAIVMRTVRNTVDT-GRTVV 1061
+ +R D G T++
Sbjct: 182 PEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 4e-15
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 15/190 (7%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 938
DKLV+ +G+S + G L+G +GAGKTT + +L G G+I++ G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 939 -FARIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
AR G Q D P T+ E+LL F + LS + R + V L+E L
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL----VPPLLEFAKL 128
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
V LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 129 ENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1056 TGRTVVCTIH 1065
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+ L + +S G + G +GAGKTTL+ +LAG R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
E++ + Y +T E+L F W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 1057 GRTVVCTIHQP 1067
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-15
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 939
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 940 ARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 993
AR EQ+ + +T+ + + S W SP + + EL L
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR--TELSHL- 130
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 131 -------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 1054 VDTGRTVVCTIH 1065
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 20/212 (9%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 939
LL+GVS RPG + A++G +GAGK+TL+ L+G G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 940 ARISGYCEQNDIHS-PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
AR QN + PF T+ E + S E ++ + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERI-AAQALAATDLSGLAGR 131
Query: 999 LVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 132 D-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G V+ +H ++ A D + L+ +G
Sbjct: 187 LAREGGAVLAVLHDLNLAAQYA-DRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 7e-15
Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L+D+S ++ G +T L+GP +GK+TLL A+ G L P+ SG + G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L +++K
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ EA L+ +G+ + D I +SGGQK+RV +
Sbjct: 119 -------KVDEA-------LERVGM-----EDLRDRQIGELSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL---LQPAPETYDLFDDIILLSD 400
L +DE TG+D + +I + L++ + G V+ + L FD +I L +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKE-LR-QEGKTVLMVTHDLGLVM---AYFDRVICL-N 213
Query: 401 GQIVYQGPRELVLE 414
++ GP E VL
Sbjct: 214 RHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 9e-15
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 17/191 (8%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQE 937
DK V+ NG+S G L+G +GAGK+T+ ++ G + G IT+ G P +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 938 TFARIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVM-ELVELNP 994
AR G Q D T+ E+LL F + +S TR+ I+ V+ L+E
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFAR 161
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
L +S VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ +
Sbjct: 162 L-ESKADAR-VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219
Query: 1055 DTGRTVVCTIH 1065
G+T++ T H
Sbjct: 220 ARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-14
Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 59/265 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L D++ IK G+LT L+G +GK+TLL L G L PT G + NG D+ + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ +++SQ+ ++ T+RE + + + + E + + P PD
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENILLA---RPDASD-EEIIAALDQAGLLEFVPKPD-- 444
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
GL DT++G+ G+SGGQ +R+ ++ PA
Sbjct: 445 ------------------------GL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIIL 397
L +DE + LD+ T I+ L++ + V+ + T+ L D I++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQE---LAKQKTVLVI------THRLEDAADADRIVV 526
Query: 398 LSDGQIVYQG-PRELVLE--FFASM 419
L +G++V QG EL + +A++
Sbjct: 527 LDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 62/255 (24%), Positives = 102/255 (40%), Gaps = 49/255 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
LKDV+ I G + ++GP +GK+TLL +L G +DPT SG + +NG + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 225 -----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+R I Q N + ++V E + +L L +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENV--------------LLGRLGYTSTWRSLFGLF 120
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ +A+ + ++ Y + A T+ SGGQ++RV +V
Sbjct: 121 SKEDKAQALDAL-ERVGILDKAYQR-------ASTL---------SGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL----FDDI 395
+ DE LD + ++++ L+ I+ G VI L DL D I
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRI 218
Query: 396 ILLSDGQIVYQGPRE 410
I L G+IV+ GP
Sbjct: 219 IGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 64/266 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK V+ +K G + ++GP SGK+TL +AG P+ +V SGT+ + G D+ E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLELEPD 72
Query: 226 RTAA---YIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
A +++ Q+ I ++ E L + ARR + + +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSA----RGEEPL 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRVTTGE 336
D + + L +LG+D +E + G SGG+KKR +
Sbjct: 115 D--LLDFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQ 157
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS-------LLQPAPET 388
M + P LA+ +DEI +GLD + + + + +I+ ++P
Sbjct: 158 MALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP---- 212
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLE 414
D + +L DG+IV G EL E
Sbjct: 213 ----DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 1e-14
Identities = 62/264 (23%), Positives = 99/264 (37%), Gaps = 69/264 (26%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
IL VS + G + LLG +GKTTLL + G L P SG++ ++G D+ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 QRTA----AYISQHDNHIGEMTVRETL--AFSARCQGVGTR-----YEMLTELA-RREKA 272
A Y+ + E+TV E L AR + YE+ L RR++
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
AG T+ SGG+++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN-SGTAVISLLQPAPETYD 390
+M P L L +DE S GL +I +R+ + G ++ + Q A +
Sbjct: 142 AIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALE 197
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
+ D +L G++V +G +L
Sbjct: 198 IADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 2e-14
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 44/212 (20%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L L DVS ++PG + L+GP +GKTTL ++G L PT SG+V ++G D+ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
A I Q E+TV E + +A+ + T +L ARRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
EA + L+ +GL AD G+ +S GQ++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+ P L L +DE + GL+ T ++ +R+
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 74/277 (26%), Positives = 115/277 (41%), Gaps = 67/277 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T + D+S IK G LLGP GKTTLL +AG P+ SG + +G D+ + VP
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-VPP 74
Query: 225 -QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+R + Q H MTV E +AF + + ++ K A I
Sbjct: 75 EKRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEI-- 113
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
KA E L+++GL+ AD +SGGQ++RV
Sbjct: 114 --------KARVEE----------ALELVGLEGFADRKPHQ-----LSGGQQQRVALARA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE + LD+ Q+ L++ + G + + E + D I +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAV 209
Query: 398 LSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++DG+I G P E+ + P + VADF+
Sbjct: 210 MNDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 939
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 940 ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
+ Q+ + S P +TI E + + E RK + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLLLLVGVGLPEEVL 139
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 940
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 941 RIS-----GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
+ G Q +PF +IY+++ + L K +DE +E
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG------IKLKEELDERVE------ 121
Query: 995 LRQSL--VGLPG-------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
++L L GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 122 --EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 1046 V 1046
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 22/221 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR-KMFIDEVMELVELNPLRQSL 999
R G+ Q+ +T+++++ F ++ E E + + E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1058
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 133 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 1092
T V H + E D + +M +G E+Y P
Sbjct: 189 TTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 24/212 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 939
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQS 998
RI GY + P + + + L++ A L+ L E E R+ IDE +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1059 TVVCTIHQPSIDIFEAF-DELFLMKRGGQEIY 1089
TV+ + HQ +++ E D + L+ +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 24/216 (11%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
GY Q D P++T+ +++ LR + ++ R E++ELV L
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER---AKELLELVGLAGFE 124
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1055
P LS R+R+ IA L P ++ +DEP LDA + + +
Sbjct: 125 DKY---PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 1056 TGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEI 1088
T +TV+ H D+ EA D + ++ I
Sbjct: 180 TRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 3e-14
Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---E 937
+L VS + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 938 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
GY Q+D LFS + E +
Sbjct: 73 ELGDHVGYLPQDDE-----------LFS------------------GSIAENI------- 96
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1058 RTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 18/188 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 941 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
R+ GY Q S F +T+ E++L A L + + + R+ ++E++E + LR+
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENIL--AVLEIR-GLSKKEREEKLEELLEEFHITHLRK 128
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1058 RTVVCTIH 1065
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 7e-14
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
++ VS R G L+G SG+GK+TL +LAG + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 941 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R Q+ S P +T+ + L LR+ R+ + E++ELV L P +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EF 422
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
L P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 7e-14
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 67/261 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
L +VS I+PG ++G SGK+TLL L G PT G+V +G D+ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG----IKPDPD 280
+R Y+ Q D + T+R+ +A A E + A AG ++ PD
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGAP----YADDEEILRAAEL---AGVTEFVRRHPD 589
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
GLD +G E R +SGGQ++ V ++
Sbjct: 590 --------------------------GLD----MQIG-ERGRSLSGGQRQAVALARALLR 618
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
P + L +DE ++ +D+ + + + L++ + +G ++ SLL DL D
Sbjct: 619 DPPI-LLLDEPTSAMDNRSEERFKDRLKRWL---AGKTLVLVTHRTSLL-------DLVD 667
Query: 394 DIILLSDGQIVYQGPRELVLE 414
II++ +G+IV GP++ VLE
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 7e-14
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 40/203 (19%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQ--- 936
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFS------AWLRLSPEVDSETR-KMFIDEVMEL 989
AR Q HS SL F + +P S + +
Sbjct: 72 AELARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQ 121
Query: 990 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 1043
V+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 122 VDLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 1044 AIVMRTVRN-TVDTGRTVVCTIH 1065
V+R R + G V+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 57/250 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---- 221
+L+DVS +KPG ++GP +GK+TLL A+ G L PT SG++ G +++
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKR 69
Query: 222 --FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+VPQR + + ++VR+ + + +
Sbjct: 70 IGYVPQRRSI------DRDFPISVRDVVL-----------------MGLYGHKGLFRRLS 106
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D KA E L+ +GL + + D I +SGGQ++RV +V
Sbjct: 107 KAD---KAKVDEA----------LERVGL-----SELADRQIGELSGGQQQRVLLARALV 148
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--LQPAPETYDLFDDIIL 397
L +DE G+D T I LR+ + T ++ L + FD ++L
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLL 204
Query: 398 LSDGQIVYQG 407
L + +V G
Sbjct: 205 L-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 41/204 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
L+ VS + PG L+GP +GK+TLL L G +DPT G++ NG + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ A++ QH + T+ E + E+ + AG+
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRL-------ARPDASDAEIREALERAGL--------- 437
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+ +A Q GL DT +G+ G+SGGQ +R+ + A
Sbjct: 438 DEFVAALPQ-------------GL----DTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQ 368
L +DE + LD+ T +++ LR
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRA 503
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 52/214 (24%), Positives = 78/214 (36%), Gaps = 48/214 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ +S + G +L GP SGKTTLL +AG L P +GT+ +G D+D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ + +TV E L F A G + DI
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIAA-- 110
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345
A+ +GL A G +S GQK+RV ++V
Sbjct: 111 -ALEA---------------VGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIW 149
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE + LD++ +R H+ G VI
Sbjct: 150 ILDEPTAALDAAAVALFAELIR--AHLAQGGIVI 181
|
Length = 207 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 65/269 (24%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
LT + DVS ++PG + L+GP +GKTTL + G P+ SGTV + G D+ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQG-----VGTRYEMLTELARREKAAGI 275
R A I+ Q +TV E +A A + +G E RE+A +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
L+ +GL AD G+ +S GQ++R+
Sbjct: 134 ---------------------------LEFVGLGELADRPAGN-----LSYGQQRRL--- 158
Query: 336 E----MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV------ISLLQPA 385
E + P L L +DE + GL+ T ++ +R + G + + L+
Sbjct: 159 EIARALATQPKL-LLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV--- 213
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 214 ---MGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 45/254 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L VS ++PG + +LGP +GK+TLL AL+G+L P SG VT NG ++ + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
A H + +LAF Q V ++ R +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM------V 339
+A+A + GL R +SGG+++RV ++ V
Sbjct: 118 QALAATD------------LSGL--------AGRDYRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
LF+DE ++ LD + + RQ G AV+++L D I+LL
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 400 DGQIVYQGPRELVL 413
G+++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 71/258 (27%), Positives = 102/258 (39%), Gaps = 49/258 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-R 226
L DVS I G L LLGP SGKTTLL +AG P SGT+ + G D + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ QH MTV + +AF R V R E E R K +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKVHEL----------- 120
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
LK++ LD AD +SGGQ++RV + L
Sbjct: 121 ----------------LKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI--- 403
+DE LD+ ++ LR+ +H + + E ++ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 867 MPEEMKVQ--GV---LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKT 919
E ++ GV D+++L +GV G + A++G SG+GK+TL+ ++ G R
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVIL-DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 920 GGYI---TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 976
G I +I + E R+ G Q +T++E++ F LR
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LR------- 111
Query: 977 ETRKMFIDEVMELVELNPLRQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIF 1030
E K+ + ELV + LVGL G S LS RKR+ +A + +P ++F
Sbjct: 112 EHTKLPESLIRELVLMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 1031 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1066
+DEPTSGLD +A ++ +R D G TV+ H
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 939
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 940 ARISGYCEQNDIHSPF--VTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVE 991
AR G + + F +T+ E+L S + L + +E R+ IDE++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 992 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 63/252 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L +VS I+ G ++G SGK+TLL LAG PT SG+V +G D+ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP----DPD 280
R Y+ Q D + T+R+ + A + +L R + AG+ P+
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA---PLADDERIL----RAAELAGVTDFVNKHPN 128
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
GL D +G E RG+SGGQ++ V ++
Sbjct: 129 --------------------------GL----DLQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDI 395
L +DE ++ +D ++ ++ LRQ + T +I SLL DL D I
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQ--LLGDKTLIIITHRPSLL-------DLVDRI 208
Query: 396 ILLSDGQIVYQG 407
I++ G+IV G
Sbjct: 209 IVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+ +L G+S G + G +G GKTTL+ +LAG R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ R Y P ++ E+L F W + I++ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1057 GRTVVCTIHQP 1067
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 62/254 (24%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---- 218
L VS + PG + LLGP +GKTTL+ LA P+ SGT+ +G D
Sbjct: 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQ 66
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R Y+ Q TVRE L + A +G+ P
Sbjct: 67 PQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PS 104
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
++ + D L+++ L + I +SGG ++RV + +
Sbjct: 105 KEVK---ARV-----------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQAL 145
Query: 339 VG-PALALFMDEISTGLDSSTTFQIVNCLRQ----NIHINSGTAVISLLQPAPETYDLFD 393
VG P++ L +DE + GLD + N L + I I S T ++ ++ L +
Sbjct: 146 VGDPSI-LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILS-THIVEDVE------SLCN 197
Query: 394 DIILLSDGQIVYQG 407
+ +L+ G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 63/251 (25%), Positives = 95/251 (37%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEF 222
I+ V PG LT LLGP SGK+TLL LAG L P +GTV G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R A + Q + +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ A + + D L L AD + +SGG+++RV +
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + +R+ +G V++ L D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 4e-13
Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
++ +S PG + L+G +GAGKTT ++ G G IT +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 944 GYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 1002
GY E+ ++ P +T+ + L + A L+ P+ + + + + +E R +VG
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLE-------RLEIVGK 123
Query: 1003 PG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+ LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL-------GR-----HSCHLISYFEAIP 1108
+ + H+ + E D L ++K+ GQ + G + G+ S + IP
Sbjct: 184 IFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIP 241
Query: 1109 GVQKIK 1114
G+ KI
Sbjct: 242 GILKIT 247
|
Length = 300 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITI 929
V G + LN VS G ++G SG+GK+TL +LAG + + +G+I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 930 SG--YPKKQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFI 983
G K+ F R Q+ S P T+ L + I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----I 121
Query: 984 DEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
E+++ V L P L + L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 21/211 (9%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQE 937
V+L+ VS G +T+++G +GAGK+TL+ + R +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 938 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
++S ++N I+S T+ + + F + + E R++ I+E +E + L L
Sbjct: 73 LAKKLSILKQENHINSRL-TVRDLVGFGRFPYSQGRLTKEDRRI-INEAIEYLHLEDLSD 130
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1056
+ LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 131 RYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 1057 GRTVVCTIHQPSIDIFEA---FDELFLMKRG 1084
G+T+V +H DI A D + +K G
Sbjct: 186 GKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 4e-13
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARIS 943
VS G + L+G +GAGKTT ++ G R G I + IS P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
GY Q +++Y++L+ A L++ ++ +E R+ +E+ME + LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1064 IH 1065
H
Sbjct: 194 DH 195
|
Length = 241 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 32/214 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 941 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
+ G Q F+ TI E++ + E + +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDFIM 123
Query: 998 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ GRT + H+ S I A D++ ++ G
Sbjct: 183 EKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 5e-13
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 379
+RG+S Q+KR+T G + LF+DE ++GLDS + IV L+ + +SG A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILC 163
Query: 380 SLLQPAPETYDLFDDIILL-SDGQIVYQG 407
++ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 5e-13
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 938
L GVS G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 939 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 994
R GY + P +T+ E+LL A+ R + + ++ V EL L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
R+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 1055 DTGRTVV 1061
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 5e-13
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK-KQETFA 940
V++N +S G L+G +GAGK+T+ +L G + G IT+ G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 941 RIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R++ G Q D P T+ E+LL F + +S + + I ++E L +S
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARL----ES 127
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 128 KADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 1059 TVVCTIH 1065
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-13
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS----GEILIDGKP------VA 73
Query: 942 ISGYCEQND-----IH-----SPFVTIYESLLFSAWL-RLSPEVDSETRKMFID--EVME 988
S + +H P +++ E++ R +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 989 LVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+ L+ V LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTL------VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+R G ++ H+ ++FE D + +++ G
Sbjct: 186 DLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 57/219 (26%), Positives = 84/219 (38%), Gaps = 53/219 (24%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 931
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 932 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSP 972
YP I G VT L +A R +
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTN-SDFLRAAMNARRGAR 113
Query: 973 EVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030
+ E K + E EL+ L+ L + + G S ++KR I L+ P +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAI 167
Query: 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
+DEP SGLD A IV + + GR V+ H +
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 72/297 (24%), Positives = 109/297 (36%), Gaps = 87/297 (29%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK V+ +K G + ++GP SGK+TL + G P +V G + ++G D
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGED------- 69
Query: 226 RTAAYISQHDNHIGEMTVRE------TLAFS--ARCQGVGTRYEMLTELARREKAAGIKP 277
I E++ E LAF GV A +
Sbjct: 70 ------------ILELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGI 115
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRV 332
P+ +K A ++LGLD +E + G SGG+KKR
Sbjct: 116 LPEFIKELKEKA--------------ELLGLD--------EEFLERYVNEGFSGGEKKRN 153
Query: 333 TTGEMMV-GPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPET 388
++++ P LA+ +DE +GLD + +N LR+ G +I+ Q
Sbjct: 154 EILQLLLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREE---GRGVLIITHYQ----- 204
Query: 389 YDLFDDII-----LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 440
L D I +L DG+IV G EL E + KG + V
Sbjct: 205 -RLLDYIKPDKVHVLYDGRIVKSGDPELAEEL---------EEKGYDWLKEVVGGEA 251
|
Length = 251 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 6e-13
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM---DEF 222
T L D+S ++ G + LLGP +GKTTL+ + G L P SG + G D+ E
Sbjct: 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFS 250
V +R Y+ + + +TVRE L S
Sbjct: 71 VKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 7e-13
Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 53/255 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM------ 219
LK+++ I PG ++GP +GK+TLL + ++P+ SG++ G D+
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+R I QH N I +TV E + R T +L + +K
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK-------- 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MM 338
+A+ L+ +GL A D++ SGGQ++RV +
Sbjct: 124 -----ERAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVAIARALA 161
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDL----FD 393
P L L DE LD T+ Q+++ L+ I+ G T +I+L Q DL D
Sbjct: 162 QQPDLIL-ADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINLHQ-----VDLAKKYAD 214
Query: 394 DIILLSDGQIVYQGP 408
I+ L G+IV+ G
Sbjct: 215 RIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 9e-13
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 52/195 (26%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+T L+D+S ++ G L+GP GK+TLL +AG PT SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ P Y+ Q D + +TV + +A QGV RE+A
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAEE---- 114
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV----TT 334
L+++GL + +SGG ++RV
Sbjct: 115 -----------------------LLELVGLSGFE-----NAYPHQLSGGMRQRVALARA- 145
Query: 335 GEMMVGPALALFMDE 349
+ V P + L +DE
Sbjct: 146 --LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 67/251 (26%), Positives = 102/251 (40%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+L+D+S I PG ++G SGK+TLL L G P G + +G D+++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R Y+ Q D + ++RE +A E + E A+ AG
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN----PEATDEEIIEAAQL---AGAHEF----- 591
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ L + DT VG E +SGGQ++R+ ++
Sbjct: 592 ---------------------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPK 629
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD T I+ L Q I G VI ++ T D II+L G+I
Sbjct: 630 ILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGKI 685
Query: 404 VYQGPRELVLE 414
V QG E +L
Sbjct: 686 VEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 52/252 (20%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM- 219
K+ + + VS +KPG +T LLGP +GKTT L LAG L+P +G T +G D+
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVV 70
Query: 220 -DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R ++S +T RE L + A G+
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL---------------------- 108
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+G E + LG++ D VG G S G +++V +
Sbjct: 109 ------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARAL 151
Query: 339 VGPALALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
V L +DE +TGLD + + + LR G ++ E L D +
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-----LGKCILFSTHIMQEVERLCDRV 206
Query: 396 ILLSDGQIVYQG 407
++L G++VY+G
Sbjct: 207 VVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA-RI 942
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 943 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 1002
G+ Q+ +T+ +++ F +R + K ++E++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDR---Y 127
Query: 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 1061
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 1062 CTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 1092
H + E D + +M G E+Y P
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 1e-12
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 94/278 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L P SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VYMKAI--ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
V M E + + L + L + +SGG+++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV-------- 143
Query: 341 PALA---------------LFMDEISTGLDSS---TTFQIV-NCLRQNIHINSGTAVISL 381
LA L +DE ++ LD + ++ + G AVI +
Sbjct: 144 -QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVIVV 197
Query: 382 LQPAPETYDL------FDDIILLSDGQIVYQGPRELVL 413
L +DL D I+LL G++V G VL
Sbjct: 198 L------HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 81/278 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL V + G + +LG SGK+TLL + G L P G + +G D+ + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ Q +TV E +AF L E + P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPES 119
Query: 280 DID--VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
I V MK L+++GL D +SGG +KRV
Sbjct: 120 LIRELVLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV----- 154
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPAP 386
ALA LF+DE ++GLD + I +R +N G VI +
Sbjct: 155 ----ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLD 207
Query: 387 ETYDLFDDIILLSDGQIVYQGPRE--------LVLEFF 416
+ D + +L+DG+++ +G E V +FF
Sbjct: 208 SLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245
|
Length = 263 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-12
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 26/240 (10%)
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
L S+ F+ V +S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 909 TLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLF 964
TL+ +L T G I I I RI G Q+ + F TI E++
Sbjct: 370 TLIKLLLRLYDPTSGEILIDGIDIRDISLD-SLRKRI-GIVSQDPLL--FSGTIRENIAL 425
Query: 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1024
E++ + E + L ++VG GV LS QR+RL IA L+
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV-NLSGGQRQRLAIARALLR 482
Query: 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
NP I+ +DE TS LD A++ ++ + GRT + H+ S + D + ++ G
Sbjct: 483 NPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 1e-12
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 23/200 (11%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS------GY 945
RPG L+GV+GAGKTT +L G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 946 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005
C Q D +T E L A LR P +E + + ++ + L+ L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVP---AEEIEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 1066 QPSIDIFEAF-DELFLMKRG 1084
S++ EA L +M +G
Sbjct: 2129 --SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G++ + G +TA++G +GAGK+TL L G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 942 IS-GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
S G Q+ + F ++Y+ + F A PE + R +D ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR---VDNALKRTGIEHLKDK- 137
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1058
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 ----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 1059 TVVCTIHQPSIDIFEAF-DELFLMKRG 1084
T++ H IDI + D +F+MK G
Sbjct: 194 TIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 2e-12
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+LKDVS IKPG ++GP SGK+TLL L DPT SG + +G D+ + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 226 --RTAAYISQHDNHIGEMTVRE 245
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 46/235 (19%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGH-DMDEFVPQRTAAYIS 232
+T + G +GK+TLL +AG P + ++GTV ++ ++ QR +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
L +LGLD + + +SGG+K+RV + L +DE +
Sbjct: 116 ----------LDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD + Q++ L+Q I N VI + E L D I+++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--- 936
K L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
ETF + GY Q D+ T+ E++ R D E +++E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVH 434
Query: 997 QSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+ ++ LP G + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089
++ G TVV H+PS + D++ +++ G +
Sbjct: 495 NAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
L VS G L ++G SG GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 943 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVG 1001
G QN+ P++ + +++ F LR ++ R+ +++ LV L + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 34/205 (16%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 933
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 934 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME----- 988
R G Q E++LF+ +R + M ++ V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 989 -----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1044 AIVMRTVRNTVDTGRTVVCTIHQPS 1068
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 2e-12
Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 115/268 (42%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
LKD++ + G L ++GP SGK++LL AL G+L+ K+SG+V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ AY+SQ N T+RE + F G ++
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFDE--------------------- 94
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQK 329
+ Y KV + CA T +G+ +GI SGGQK
Sbjct: 95 ----------------ERYEKV--IKACALEPDLEILPDGDLTEIGE---KGINLSGGQK 133
Query: 330 KRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAV- 378
+R+ +LA +D+ + +D+ I NC+ + +N+ T +
Sbjct: 134 QRI---------SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRIL 183
Query: 379 ----ISLLQPAPETYDLFDDIILLSDGQ 402
+ LL A D I++L +G+
Sbjct: 184 VTHQLQLLPHA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 36/174 (20%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 941 RISGYCEQNDIHSPFVTIYESL---------------LFSAWL-RLSPEVDSETRKMFID 984
R +G + P T++E+L +F++ RLS E I+
Sbjct: 76 R-AGIGRK--FQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IE 125
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
EV+E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 126 EVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 66/277 (23%)
Query: 148 FEDI-LNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL 206
F+++ Y PS+ ILK +S I PG+ L+G GK+T++ L DPT
Sbjct: 3 FKNVSFRY----PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT- 56
Query: 207 KVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
SG + +G D+ + + +SQ + + + T+ E + +
Sbjct: 57 --SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------------- 100
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
KPD + +A +AN I D+ ++ L DT+VG+ RG
Sbjct: 101 ------------KPDATDEEVEEAAK----KAN-IHDF---IMSLPDGYDTLVGE---RG 137
Query: 324 --ISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 379
+SGGQK+R+ ++ P + L +DE ++ LD+ + + L T VI
Sbjct: 138 SQLSGGQKQRIAIARALLRNPKI-LLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIA 195
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV 412
S ++ A D I +L +GQ+V QG EL+
Sbjct: 196 HRLSTIRNA-------DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 72/272 (26%), Positives = 112/272 (41%), Gaps = 68/272 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF- 222
+LKDVS I G+ ++GP SGK+T+L L D + SG++ +G D+ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVT 69
Query: 223 ----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
VPQ T + +D T+ + + R A
Sbjct: 70 LDSLRRAIGVVPQDTVLF---ND------TIGYNIRYG------------------RPDA 102
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKK 330
D +V A A + I D K++ DT+VG+ RG +SGG+K+
Sbjct: 103 T------DEEVIEAAKAAQ------IHD---KIMRFPDGYDTIVGE---RGLKLSGGEKQ 144
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
RV ++ L +DE ++ LD+ T +I LR G I + +
Sbjct: 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS---KGRTTIVIAHRLSTIVN 201
Query: 391 LFDDIILLSDGQIVYQG-PRELVLE--FFASM 419
D II+L DG+IV +G EL+ + +A M
Sbjct: 202 A-DKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 939
+LN +S + G +TAL+G +G GK+TL+ A T +G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 940 ARISGYCEQNDIHSPFVTIYE------SLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
AR Q+ + +T+ E S S W RLS E +++ ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRIN 129
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 1054 VDTGRTVVCTIHQPSIDIFEA---FDELFLMKRGG 1085
G+TVV +H D+ +A D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 4e-12
Identities = 59/259 (22%), Positives = 96/259 (37%), Gaps = 67/259 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+ L+ VS ++ G + LLG +GKTTLL + G + P SG + ++G D+
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PQRTA----AYISQHDNHIGEMTVRETL--AFSARCQGVGTR------YEMLTELA-RRE 270
P A AY+ + +TV E L AR YE+ L RR
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRN 131
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ AG T+ SGG+++
Sbjct: 132 QRAG---------------------------------------TL---------SGGEQQ 143
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
+ +M P L L +DE S GL +I +++ + G ++ + Q A
Sbjct: 144 MLAIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFAL 201
Query: 390 DLFDDIILLSDGQIVYQGP 408
++ D +L +G+IV G
Sbjct: 202 EIADRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-12
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 44/216 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEFV 223
+L VS + PG +LGP SGK+TLL LAG LDP G VT +G +D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + +Q D H+ + TVRE L + T E+ L R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWLR--- 455
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
L DT++G E +SGG+++R+ ++ A
Sbjct: 456 -----------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
L +DE + LD+ T +++ L SG V+
Sbjct: 492 ILLLDEPTEHLDAETADELLEDLLA---ALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 44/240 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T L D++ I G +LLGP GKTT L +AG +PT SG + G D+ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R A + Q+ MTV + +AF + + V P +ID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDER 110
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
++ +A ++L ++ + D + +SGGQ++RV G +V
Sbjct: 111 VREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
MDE + LD+ Q+ L+ + GT I + E + D I +++DGQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 63/245 (25%), Positives = 102/245 (41%), Gaps = 51/245 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL----DPTLKVSGTVTYNGHDMDEF 222
+L D++ I PG + +L GP SGKTT LL L G L + +LKV G Y + +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+R YI Q N +G +T R Q V E+ L+ +E
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE--------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM---IRGISGGQKKRVTTGEMMV 339
+A A L+ +GL GD + +SGGQK+RV +V
Sbjct: 121 ---RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARALV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ DE + LDS + +V +++ G ++ ++ D+ D I+ +
Sbjct: 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVADRIVHME 215
Query: 400 DGQIV 404
DG+++
Sbjct: 216 DGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 6e-12
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 941 R--ISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQ 997
R ++ + + + I + FS LR L TR+ +DE + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR--VDEALTLVDAQHFRH 131
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 1058 RTVVCTIHQPSID-IFEAFDELFLMKRG 1084
V+ + H ID I+E D ++++++G
Sbjct: 187 NHVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
+N VS G + L+G +GAGKTT ++ G R G I + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 941 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVELNPL 995
R+ GY Q S F +T+ ++++ A L + E D + RK +D ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIM--AVLEIR-EKDLKKAERKEELDALLEEFHITHL 132
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
R S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 1056 TGRTVVCTIH 1065
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 57/251 (22%), Positives = 105/251 (41%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL D+S + G++T L+GP GK+TLL A L P SGTV + +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A ++ QH +TVRE +A+ G P
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY------------------------GRSP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ E N + ++ ++ AD + D +SGGQ++R ++
Sbjct: 104 -WLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD + +++ +R+ G V+++L + D +++L++G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 403 IVYQGPRELVL 413
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-12
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQND-IH 952
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 953 SPFVTIYESLLFSA------WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006
F + E ++ WLR + + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK 935
+L VS G A++G SG+GK+T++ DV +G I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 936 ---QETFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
++ R G Q ND TI ++ + EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 988 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+R V GRT + H+ S I A D++ ++K G
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 939
L G+S G + +G +GAGKTT + +L+G + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVELNPLRQS 998
RI Q + + +S A + L P + DE+ EL++L L +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL----DELSELLDLEELLDT 149
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1057
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 -----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 1058 RTVVCTIH 1065
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
+N +S + L+G +GAGK+TL+ ++ G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
I E ++ +T E+L L P DS IDEV+ +V+L G
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTN-----TG 118
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-E 937
V L+GVS + G L+G SG GKTTL+ ++AG +T +G I + G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 938 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
R QN P +T++E++ F LRL ++ K + E ++LV+L
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYAN 125
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 46/211 (21%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGNITISG---YPK 934
LN VS F P +TAL+G SG+GK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 935 KQETF---ARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 990
+ +T I +Q + PF ++IYE++++ LRL D K +DE +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKD----KQVLDEAVE-- 126
Query: 991 ELNPLRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+SL G GLS Q++R+ IA L +P II +DEPTS LD
Sbjct: 127 ------KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
Query: 1040 ARAAAIVMRTVRNTVD--TGRTVVCTIHQPS 1068
+A + T+ D T V ++ Q S
Sbjct: 181 PISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 21/193 (10%)
Query: 898 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 954
++G +G+GK+ L++ +AG +G + I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM---ELVELNPLRQSLVGLPGVSGLSTE 1011
+T+Y+++ + R + + E + + I E++ L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1071
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1072 FEAFDELFLMKRG 1084
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 68/256 (26%), Positives = 113/256 (44%), Gaps = 34/256 (13%)
Query: 838 EASRPKKKGMVLPFEPHS-LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVL 896
+ M LP P L+ + + + P + K +L G+S A + G
Sbjct: 317 AELPAAAERMPLP-APQGALSVERLTAAP--PGQKKP---------ILKGISFALQAGEA 364
Query: 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 953
++G SG+GK+TL +L G +G++ + G +Q E R GY Q D+
Sbjct: 365 LGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVEL 421
Query: 954 PFVTIYESLLFSAWLRLSPEVDSETRKMF----IDEVMELVELNPL-RQSLVGLPGVSGL 1008
TI E++ R E D E K+ + V EL+ P + +G G + L
Sbjct: 422 FDGTIAENIA-----RFGEEADPE--KVIEAARLAGVHELILRLPQGYDTRIG-EGGATL 473
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068
S QR+R+ +A L +P ++ +DEP S LD+ A + + G TVV H+PS
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533
Query: 1069 IDIFEAFDELFLMKRG 1084
+ D++ +++ G
Sbjct: 534 --ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 34/197 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L G+S PG AL+G SG GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 937 ---ETFARISGYCEQNDIHSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMEL 989
G Q P TI E++ + EV+ +K I + +M L
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 990 VELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
P +LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 126 ----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1049 TVRNTVDTGRTVVCTIH 1065
+ + GRT + H
Sbjct: 181 AL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 66/277 (23%), Positives = 99/277 (35%), Gaps = 68/277 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L VS IK G LLGP GKTTLL +AG PT SG + +G D+ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q+ +TV E +AF R + + E+ R A
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+ + EG + +SGGQ++RV +V
Sbjct: 115 LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQ-------NIHINSGTAVISLLQPAPETYDLFDDIIL 397
L +DE LD LR+ + G + + E + D I +
Sbjct: 152 LLLDEPLGALDLK--------LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAV 203
Query: 398 LSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++ G+I G P E+ + P + VADF+
Sbjct: 204 MNKGKIQQIGTPEEI---------YEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 2e-11
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFA 940
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
R QN P + + +++ F + P+ D R + + ++LV L L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAHL- 134
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1058
+ LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 135 ----PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG 1084
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-P-KKQETFARISGYCEQ 948
G + +G +GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLVMG 104
Query: 949 NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVS 1006
+ + +SL L+L E+ + +D + E+++L L+ V
Sbjct: 105 QKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP------VR 155
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIH 1065
LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV+ T H
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
Query: 1066 QPSIDIFEAFDELFLMKRGGQEIYVGPL 1093
DI D + L+ + GQ ++ G L
Sbjct: 216 IFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 49/198 (24%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S K+ IL D+S + G + L G +GKTTL LAG + + SG++ NG +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64
Query: 220 DEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+++ Y+ Q D + +VRE EL K
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVRE-------------------ELLLGLKELD---- 101
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EM 337
N + LK L L + +SGGQK+R+ +
Sbjct: 102 ---------------AGNEQAETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAAL 141
Query: 338 MVGPALALFMDEISTGLD 355
+ G L L DE ++GLD
Sbjct: 142 LSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-11
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +VS +K G + L+GP SGK+TLL A+AG L PT SG + +G D+ + +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLE 69
Query: 226 ---RTAAYISQ 233
R Y+ Q
Sbjct: 70 ELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 67/263 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHD---MDE 221
LKD+S I G +T L+GP GK+TLL L L P G V +G D +D
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
V + R + Q N ++ + +A+ R G+ + EL R + A
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM-----IRGISGGQKKRVTT 334
L+ L DE+ G+SGGQ++R+
Sbjct: 124 -----------------------LRKAALW--------DEVKDRLHALGLSGGQQQRLCL 152
Query: 335 GE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETY 389
+ P + L +DE ++ LD +T +I + + + ++ ++ Q A
Sbjct: 153 ARALANEPEV-LLLDEPTSALDPISTAKIEELIAE---LKKEYTIVIVTHNMQQAA---- 204
Query: 390 DLFDDIILLSDGQIVYQGPRELV 412
+ D L +G++V GP E +
Sbjct: 205 RVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 56/246 (22%), Positives = 97/246 (39%), Gaps = 53/246 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L D+S ++ G + LLGP +GKTT + + G + P SG V ++G +D +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ + +M V + L + A+ +G+ ARR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR--------------- 108
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPALA 344
D +L+ L L A ++ + +S G +++V ++ P L
Sbjct: 109 -------------IDEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE +GLD ++ L + G VI +L D ++LL+ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELARA-----GKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 402 QIVYQG 407
+ V G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI-----SGYPKKQET 938
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 939 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
R + GY Q F+T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1056
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 62/219 (28%), Positives = 93/219 (42%), Gaps = 25/219 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
++ V+ G L+G SG+GKTT + ++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R GY Q P +T+ E++ L D E K DE+++LV L+P +
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDP-SEYA 129
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNTVDT 1056
P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 130 DRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--L 185
Query: 1057 GRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEIYVGP 1092
G+T+V H DI EA D + +M G Y P
Sbjct: 186 GKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 53/269 (19%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNG 216
+RH IL+D+S I+PGR+T LLG +GK+TLL ALAG L +V+G VT NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 217 HDMDEFVPQRTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ R A A + Q + AFSAR + RY ARR A
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYPH----ARRAGAL 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
+ D ++ +A+A G A +VG + + +SGG+ RV
Sbjct: 119 THR---DGEIAWQALALAG-------------------ATALVGRD-VTTLSGGELARVQ 155
Query: 334 TGEMM---------VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
++ P L +DE + LD + ++++ +R+ + + V++++
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR-LARDWNLGVLAIVHD 214
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVL 413
D I +L+DG IV G VL
Sbjct: 215 PNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQET- 938
+N ++ G L+G SG+GKTT M + I G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 939 --FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R GY Q P +T+ E++ + +L + E + DE++ LV L+P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI--ALVPKLL-KWPKEKIRERADELLALVGLDP-- 125
Query: 997 QSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------ 1049
P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 126 AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEF 178
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
R + G+T+V H DI EAF D + +MK G
Sbjct: 179 KRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---- 933
E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G +++ G P
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPLHQM 77
Query: 934 ---KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 990
+ + A+ G+ Q+ + P + E++ A LR E ++R + L+
Sbjct: 78 DEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGAKALL 131
Query: 991 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 132 EQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 61/254 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L DVS ++PGR LLGP +GK+TL L G ++ GHD+ P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L LGL A+ D+ +R ++GG ++RV ++ PAL
Sbjct: 117 ------------------LARLGL---AER--ADDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVN-----CLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
L +DE + GLD ++ I Q + + T ++ ++ D +++L
Sbjct: 154 -LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 399 SDGQIVYQG-PREL 411
G+++ G EL
Sbjct: 206 HRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 66/263 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G ++ +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFG--------RFP--------------------- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
Y + T+ E I + ++ L L + D + +SGGQ++R +
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHL-----EDLSDRYLDELSGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------ 391
LA + +DE LD + QI+ LR+ T V+ L +D+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCY 202
Query: 392 FDDIILLSDGQIVYQGPRELVLE 414
D I+ L +G++V QG + +++
Sbjct: 203 SDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 24/164 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFA 940
L+ VS + G + +G +GAGK+T M ++ G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 941 --RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPL 995
R GY + H+P +Y + +L+ + + K ++E++ELV L P
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-11
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 908 TTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS----GYCEQNDIHSPFVTIYESLL 963
+TL+ ++ G +G I + G + ++ G Q+ P +T+ E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1023
F + +E +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1024 ANPSIIFMDEPTS 1036
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFA 940
L+ VS R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G Q+ P T+YE++ +R E + + R + + V L
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH---KA 131
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 132 DAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 1060 VVCTIHQPSI 1069
V+ H S+
Sbjct: 190 VIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 61/247 (24%), Positives = 96/247 (38%), Gaps = 46/247 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEFVPQ 225
++ VS ++ G + LLGP +GKTT + L L PT SG T GHD+ + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
R + Q + E+T E L AR GV E R
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRER---------------- 111
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345
D L +GL D +++ SGG ++R+ +V L
Sbjct: 112 -------------IDELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405
F+DE + GLD T + + + + G ++ E L D + ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 406 QG-PREL 411
+G P EL
Sbjct: 213 EGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-11
Identities = 66/286 (23%), Positives = 107/286 (37%), Gaps = 87/286 (30%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGH 217
+ + ++DVS ++PG + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 218 DMDEFVPQ-------RTAAYISQH-----------DNHIGEMTVRETLAFSARCQGVGTR 259
D+ + + A I Q + I E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL--------------H 121
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319
+ AR+ L+ +GL D D
Sbjct: 122 GKGSRAEARKR----------------------------AVELLEQVGLP---DPERRDR 150
Query: 320 MIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+SGG ++RV M+ ALA L DE +T LD +T QI++ L+ ++
Sbjct: 151 YPHQLSGGMRQRV-----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLK-DLQREL 204
Query: 375 GTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
G AV+ + T+DL D ++++ G+IV GP E +L
Sbjct: 205 GMAVLFI------THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 6e-11
Identities = 64/225 (28%), Positives = 106/225 (47%), Gaps = 26/225 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARI 942
L+ V G + AL+G SG+GK+TL+ L+G TG G +I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 943 SGYCEQNDIHSPFV----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 992
+ ++ ++ ++ ++ E++L A L +P + + + L
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWRTCFS--WFTREQKQRAL 134
Query: 993 NPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
L + VG+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 135 QALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 1048 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
T+R+ G TVV T+HQ +D + E + R G Y G
Sbjct: 193 DTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 49/182 (26%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 934 KKQETFA---RISGYCEQ--NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
K + R+ G Q N PF +IY+++ + LRL D E +DE++
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE-----LDEIV 126
Query: 988 ELVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
E + L++ L + GLS Q++RL IA L P ++ MDEPTS
Sbjct: 127 E----SSLKK--AALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1038 LD 1039
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 57/250 (22%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+L+D+S I G L+GP SGK+TL+ + D SG + +GHD+ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R +SQ D + TV E +A+ G E+ +AA
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAY-------GRPGATREEVEEAARAAN--------- 116
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVGP 341
A E I + L DT++G+ RG+ SGGQ++R+ ++
Sbjct: 117 -----AHE-----FIME-------LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIIL 397
L +DE ++ LD+ + + L + + N T VI S ++ A D I++
Sbjct: 157 PPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENA-------DRIVV 208
Query: 398 LSDGQIVYQG 407
L DG+IV +G
Sbjct: 209 LEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 7e-11
Identities = 74/294 (25%), Positives = 109/294 (37%), Gaps = 77/294 (26%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
+T L DVS I G + ++G +GK+TLL + PT SG+V +G D+
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLT 71
Query: 221 EF--VPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVG--TRYEMLTELARREKA 272
R I QH N + TV E +AF GV + + EL
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL--- 128
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
+ + KA Q +SGGQK+RV
Sbjct: 129 --------VGLSDKADRYPAQ------------------------------LSGGQKQRV 150
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPA 385
+ ALA L DE ++ LD TT I+ L+ IN G ++ L+
Sbjct: 151 A-----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHE 201
Query: 386 PE-TYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438
E + D + +L G++V +G V E FA+ PK +F+ E
Sbjct: 202 MEVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 8e-11
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISG-----YPKKQ 936
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R G Q+ + P +++ ++LLF+ L + R+ + +E L+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-10
Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 70/266 (26%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFV 223
+ DVS ++ G L+G SGK+TL LAG L P+ SG++ ++G D+D E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELR 363
Query: 224 PQR-TAAYISQH-----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
R + Q + MTV + LA R G G+ E RR + A +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE------RRARVAEL-- 412
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-E 336
L+++GL D +SGGQ++RV
Sbjct: 413 -------------------------LELVGL----PPEFLDRYPHELSGGQRQRVAIARA 443
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV--IS-----LLQPAPETY 389
+ + P L L +DE + LD S Q++N L+ + G IS + A
Sbjct: 444 LALEPKL-LILDEPVSALDVSVQAQVLNLLKD-LQEELGLTYLFISHDLAVVRYIA---- 497
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEF 415
D + ++ DG+IV +GP E V E
Sbjct: 498 ---DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 52/267 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-R 226
LK+VS ++ G ++LGP SGK+ LL +AG + P SG + NG D+ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+Y+ Q+ MTV + +A+ G+ R E+ R+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERK---------------VL 111
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
IA ++LG+D + + +SGG+++RV +V L
Sbjct: 112 EIA--------------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T ++ L++ I G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFASMGFRCPKRKGVADFL 433
G E V F+ PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 893 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQ-ETFARISGYC 946
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006
Q P +++ +L + R++ + V+EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L + G A++G SG+GK+TL+ +LAG G+IT++G I+
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE--------IA 403
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQS 998
EQ + V LFS LR +P+ E + ++ V L L +S
Sbjct: 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE----LWAALQQVGLEKLLES 459
Query: 999 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 460 APDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518
Query: 1052 NTVDTGRTVVCTIH 1065
+ G+T++ H
Sbjct: 519 EHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSL 999
G Q+ P +T+ +++ + + R M EV E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 1000 VGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G Q+ P T+YE++ LR+ + E R+ V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRR----RVSEVLDLVGLKHKA 131
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1060 VVCTIH 1065
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-- 935
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 936 -QETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
+ R G QN + S +I+E++ A L+ DE E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGA--PLTL-----------DEAWEAARMA 565
Query: 994 PLRQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1045 IVM 1047
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L ++ G L ++G SG GKTTL++++AG Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
G QN+ P+ + +++ F L+L+ V+ R ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1059
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1060 VVCTIHQPSIDIFEAF---DELFLMKRG 1084
V+ H DI EA EL L+ G
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 60/247 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L ++ I G L+GP +GK+TLL + + PT SGT+ NG D+ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y+ + D + + V E +AF+ GV R E+ +R AA
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L+++GL + +SGG+++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD----II 396
L DE + LD TT++I+N L++ I+ T V+ A +L D +I
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVV-----ATHAKELVDTTRHRVI 207
Query: 397 LLSDGQI 403
L G++
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
+ L+ VS G + ++G SGAGK+TL+ ++ R T G + ++ + +
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77
Query: 937 -ETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
+ G Q N + S T++E++ F L L+ V K V EL+EL
Sbjct: 78 LRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELA-GVPKAEIK---QRVAELLEL- 128
Query: 994 PLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVM 1047
VGL + LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 129 ------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1084
+ G T+V H+ +++ + D + ++ +G
Sbjct: 183 LLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 60/201 (29%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GNITISGYP--KKQ 936
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 937 ETFARI----SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 992
+ R G+ QN P T+ E+++ + V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 993 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1048 RTVRNTVDTGRTVVCTIHQPS 1068
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 941 RISG---YCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVM------- 987
++ +Q DI T+ ++L + W P+ V + D +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 988 -ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
EL E G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 607 AELAE------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 1047 MRTVRNTVDTGRTVVCTI--HQPSIDIFEAFDELFLMKRG 1084
+R R C I H+ S I + DE+ +++RG
Sbjct: 655 DDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 939
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 940 ARISGYCEQNDIHSPFVTIYESLL--FSAWLRLS-PEVDSETRKMFIDEV-MELVELNPL 995
+ + + F+ + LL F+A ++ P + + E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 1052
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
++T VV H ++ + D + MK G
Sbjct: 190 ELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 941
LL VS PG L+G +GAGK+TL+ +LAG +G +T R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 942 ISGYCEQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
+ GY Q P T+ + ++ F L E++ + + L EL L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 1000 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1041 RA 1042
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS---GYCEQN---DI 951
A++G +GAGK+TL G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011
SP T+ + + F ++ +D ET + + ++ L LR + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1070
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1071 IFEAFDELFLMKRGG-------QEIYVGP 1092
+ E D +++M +G +EI++ P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 899 LMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETFARISGYCEQNDIHSP 954
L+G SG GKTT + ++AG T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014
+T+Y+++ F LR P+ + + R + EV EL+++ L LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDAR 1041
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 3e-10
Identities = 57/270 (21%), Positives = 101/270 (37%), Gaps = 51/270 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T+L D+S I+ G L L+G GKTTLL A+AG + ++G + D+ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R A + Q+ + V + +AF R A++ A I
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKADI--------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A + D LK++GL + +SGG ++R+ +
Sbjct: 115 ----------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE + LD++ + + ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFL 433
G P+ L + P A+FL
Sbjct: 219 AHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 932 YP---KKQETFARIS----GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 984
P ++ A + G+ Q+ P +T E++ LR DS
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG----- 126
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 1040
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 127 -AKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
+ A ++ R + G T+V H P +
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 27/223 (12%)
Query: 871 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930
M++ V E L +SG R G + L+G +GAGK+TL+ +AG +G +G+I +
Sbjct: 4 MQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFA 58
Query: 931 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
G P + AR Y Q +P W L+ +TR +++V
Sbjct: 59 GQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVA 110
Query: 988 ELVEL-NPLRQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDAR 1041
+ L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + R + G +V + H + + A +L+KRG
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 41/227 (18%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISG---YPKKQ 936
++GVS + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 937 ETFARISG----YCEQNDIHS--PFVTI----YESLLFSAWLRLSPEVDSETRKMFIDEV 986
+ +I G Q+ + S P +TI E L ++K +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 987 MELVELNPLRQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+EL+E LVG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLE-------LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1039 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
D A ++ ++ + G ++ H + + E D + +M G
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-10
Identities = 65/248 (26%), Positives = 103/248 (41%), Gaps = 49/248 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK V+ + PG + LLG +GK+TL+ L+G +PT GT+T N + ++ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID- 282
A I Q + I E+TV E L + R LT +K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
M+ A L +GL V D V + +S K+ + + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ MDE ++ L + F I+N LR GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 DGQIVYQG 407
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-10
Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 58/268 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L +S VI+PG L+G SGK+TL+ + +P SG + +GHD+ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R A +SQ D + T+ +A+ Q A E+A
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQAD---------RAEIERAL----------- 443
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A D+ V L + DT +G+ + +SGGQ++R+ ++ A
Sbjct: 444 --------AAAY-AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPI 490
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ + + L + + T VI S ++ A D I+++ D
Sbjct: 491 LILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVMDD 542
Query: 401 GQIVYQGPRELVLE---FFA---SMGFR 422
G+IV +G +L +A +M FR
Sbjct: 543 GRIVERGTHNELLARNGLYAQLHNMQFR 570
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 830 QSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 889
+ + P ++L + FDE E+ LN +S
Sbjct: 3 DYFMKKKLKVPNPLSDDIILRVKNLYCVFDE-----KQENELVA----------LNNISY 47
Query: 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARISGYCEQ 948
F + ++G SG+GK+TL+ G Y G I + Y ++ +
Sbjct: 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKKNNHELITNPYS 105
Query: 949 NDIHS--------PFV-----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
I + V TI + ++F + +++ F M L
Sbjct: 106 KKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGL 165
Query: 990 ----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+E +P GLS Q++R+ IA L P I+ DEPT+GLD +
Sbjct: 166 DDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+M+ + + +TV H + E DE+ +M +G
Sbjct: 215 MMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 39/223 (17%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISG----Y 932
D L G++ G + AL+G +GAGK+TL G + T +G + I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 933 PKKQETFARIS-GYCEQN---DIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVM 987
KK R + G QN + +P T+ E + F L L + + E R V
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP-LNLGLSKEEVEKR------VK 119
Query: 988 ELVELNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
E ++ VG+ G LS Q+KR+ IA L P II +DEPTSGLD
Sbjct: 120 EALKA-------VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
Query: 1043 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1084
A+ +M+ + + G T++ + H +D+ + D++++M G
Sbjct: 173 ASQIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 4e-10
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 938
L GVS G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 939 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 994
R Y + P +T+ E+LL L D E ++ ++EV EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLL----LGAYARRDKEAQERDLEEVYELFPRLKE 128
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1055 DTGRTVVCTIHQ 1066
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-10
Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 42/225 (18%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 936
D +L+ ++ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMEL 989
R G V + E++LFS +R +P E V+
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIRDNIALCNPGAPFE-------HVIHA 566
Query: 990 VELNPLRQSLVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+L + LP G LS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Query: 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ A++MR +R + GRTV+ H+ + A D + ++++G
Sbjct: 626 YESEALIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-10
Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 941 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR 996
Y Q P++ TI E++LF D E ++V++ L P L
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 997 ------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 1049
+ +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 5e-10
Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 938
+V + VS + + G + AL+G +GAGK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG----EIRVDGKE----- 67
Query: 939 FARISGYCEQND-----IHSPFV-----TIYESLLFSAWLRLSPEVD-SETRKMFIDEVM 987
RI + +H F+ T+ E+++ +D + R I E+
Sbjct: 68 -VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IKELS 125
Query: 988 EL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
E + ++P + V+ LS +++R+ I L ++ +DEPT+ L + A
Sbjct: 126 ERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178
Query: 1046 VMRTVRNTVDTGRTVV 1061
+ +R G+T++
Sbjct: 179 LFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 54/219 (24%), Positives = 83/219 (37%), Gaps = 55/219 (25%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
+ + L+ILK V V+K G ++GP SGK+TLL LAG DP+ SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 218 D---MDE----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+DE + R ++ Q + I +T E +A +G + A+
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG--AKAL 130
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI---RGISGG 327
L+ +GL G + +SGG
Sbjct: 131 --------------------------------LEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
+++RV G LF DE + LD +T +I + L
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-10
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
D L +G+S G + G +G+GKTTL+ +LAG G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
++ AR Y +++ E+L F + E ++E + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF-----WHADHSDEQ----VEEALARVGLNGFE 119
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 1057 GRTVVCTIHQP 1067
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 33/226 (14%)
Query: 899 LMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015
+T+ E++ F +R +V K + E + LV+L LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 1074
+ +A LV P I+ +DEP S LD + + ++ + G T V H D EA
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEA 164
Query: 1075 F---DELFLMKRG-------GQEIYVGPLGRHSCHLI---SYFEAI 1107
D + +M++G +EIY P I + FEA
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEAT 210
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 7e-10
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L D+S I+ G + +LGP +GK+TLL LAG L P+ SG + +G D+ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 7e-10
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-----ISGYPK 934
+ VS PG + ++G SG+GK+TL L G + G +G + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 935 KQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 990
++ + Q+ + S P +TI + A LRL + + E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTI-GDQIREA-LRLHGKGSRAEARKRAVELLEQV 140
Query: 991 EL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
L +P R+ P LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 1050 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+++ + G V+ H + + E D + +M +G
Sbjct: 197 LKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ET 938
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
FAR Y Q + +T+ E + W + R+ ++E + LV L PL
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLA 141
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 1055
LV LS +R+R IA+ + + + +DEPTS LD V+ V R + +
Sbjct: 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
G TV+ +H I++ + + + RGG+ I G
Sbjct: 197 RGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 70/273 (25%), Positives = 108/273 (39%), Gaps = 62/273 (22%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215
++ +T LKDVS + G + ++G +GK+TL+ + G PT SG+V +
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVD 65
Query: 216 GHDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
G D+ +R I QH N + TV E +A E+A
Sbjct: 66 GTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP-------------LEIAGV 112
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
KA E V L+++GL D D +SGGQK
Sbjct: 113 PKAE-------------------IEERV--LELLELVGL---EDK--ADAYPAQLSGGQK 146
Query: 330 KRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
+RV + ALA L DE ++ LD TT I+ LR I+ G ++ +
Sbjct: 147 QRVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD-INRELGLTIVLITHE 200
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
+ D + ++ G++V +G V E FA
Sbjct: 201 MEVVKRICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 74/296 (25%), Positives = 121/296 (40%), Gaps = 60/296 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---- 222
L D+S I G T L+G SGK+T+ + G L P + +T +G +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ ++ DN TV + +AF + V R EM+ I D D
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK----------IVRDVLAD 130
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGP 341
V M DY D +SGGQK+RV G + V P
Sbjct: 131 VGM-------------LDYI---------------DSEPANLSGGQKQRVAIAGILAVEP 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ + +DE ++ LD + QI+ +R+ + + VIS+ E ++ D +++L DG
Sbjct: 163 KI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLDDG 219
Query: 402 QIVYQG-PRELV--LEFFASMGFRCP---------KRKGVADFLQEVTSRKDQRQY 445
+++ QG P E+ +E +G P K KG++ QE+ + + QY
Sbjct: 220 KLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 24/210 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 940
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 941 RIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
R Y Q P +T+ E+LL R I + E+ EL P+ +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLK 122
Query: 998 SLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
++G G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 1057 GRTVVCTIHQPSIDI-FEAFDELFLMKRGG 1085
G + + Q +D E D ++M+RG
Sbjct: 181 GGMAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-10
Identities = 77/323 (23%), Positives = 119/323 (36%), Gaps = 67/323 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
++ ++ I G LLGP GKTT+L +AG P SG + +G D+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R + Q MTV E +AF R Q E+ R A
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA----------- 128
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
L+++ L+ A +SGGQ++RV +V
Sbjct: 129 ------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKPKV 165
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE + LD Q+ N L+ + G + + E + D I+++ DG+I
Sbjct: 166 LLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFLQE-------VTSRKDQRQYWAHKEKPYRFV 456
G PRE+ + PK VA F+ E V R D+++ A+ E +
Sbjct: 225 QDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGRECNI 275
Query: 457 TVQEFAEAFQSFHVGQKISDELR 479
V + GQK+ LR
Sbjct: 276 YVN------FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-10
Identities = 64/248 (25%), Positives = 102/248 (41%), Gaps = 45/248 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MDEF 222
+LKD+S I+PG ++GP SGK+TL+ L DPT SG + +G D +
Sbjct: 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLD 399
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ +SQ D + T+RE +A G E+ K A
Sbjct: 400 SLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEF---- 447
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ L DT+VG E +SGGQ++R+ ++
Sbjct: 448 ----------------------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNP 484
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD+ T I + L+ + T +I+ T D II+L +G+
Sbjct: 485 PILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHR---LSTIKNADRIIVLDNGR 540
Query: 403 IVYQGPRE 410
IV +G E
Sbjct: 541 IVERGTHE 548
|
Length = 567 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 8e-10
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPK--------K 935
VS PG + ++G SG+GKTTL+ ++GR T G +T G P+ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAE 82
Query: 936 QETFARIS-GYCEQNDIH------SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 988
+ R G+ QN S I E L+ + R + +E + +E
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAEAQDW-----LE 136
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
VE++ R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 137 EVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 1049 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
+R V + G VV H ++ A D L +MK+G
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 9e-10
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 27/175 (15%)
Query: 886 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETF 939
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 940 A--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR- 996
A R G Q P ++++++++ A L+L+ D D +ME+ E LR
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDR-------DHLMEVAE-RSLRG 131
Query: 997 -------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+ + P +GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 132 AALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 9e-10
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 50/224 (22%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I I G + FA +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPE------------------VDSETRKMFIDE 985
+ + IY+ L L PE V+ R++ E
Sbjct: 75 -----AALAAGVAIIYQEL------HLVPEMTVAENLYLGQLPHKGGIVN---RRLLNYE 120
Query: 986 VMEL-----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
E V+++P + LS QR+ + IA L N +I DEPTS L A
Sbjct: 121 AREQLEHLGVDIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
R + R +R GR ++ H+ +IF D + + K G
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 49/220 (22%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----- 221
+LK ++ + G + LLG +GK+TLLL L G L P SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q D+ + V + +AF G+ E+ RR + A
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L +G + +SGG+KKRV +
Sbjct: 112 ----------------------LTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
L +DE + GLD + Q++ LR + T VIS
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILR-RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+DVS I G L ++LGP GKTTLL +AG + P G++ NG ++ P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG--PGA 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + + V + +AF + +G+ RRE A
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIA-------------- 113
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALAL 345
L ++GL + I +SGG ++RV + V P L L
Sbjct: 114 -------------HQMLALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403
+DE LD+ T Q+ L ++ +G V+ + E L +++LS G++
Sbjct: 155 LLDEPFGALDALTREQMQELL-LDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213
Query: 404 V 404
V
Sbjct: 214 V 214
|
Length = 259 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 45/249 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH-----DMD 220
IL D+S + PG ++GP +GKTTLL L G+ P+ SG VT G +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 221 EFVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ ++ +S H+ TVR+ + S +G E LT A +
Sbjct: 102 FEL-RKRIGLVSSELHERFRVRETVRDVVL-SGFFASIGIYQEDLTA-EDLAAAQWL--- 155
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
L++LG AD G +S G+++RV +
Sbjct: 156 ------------------------LELLGAKHLADRPFGS-----LSQGEQRRVLIARAL 186
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + GLD Q++N L + A++ + A E F +LL
Sbjct: 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246
Query: 399 SDGQIVYQG 407
+G++V QG
Sbjct: 247 KEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-09
Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 52/261 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---V 223
IL D+S IK T ++G SGK+TL L G SG + NG + +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
++ Y+ Q + +I ++ E L A+ + + A IK D I+
Sbjct: 546 LRQFINYLPQ-EPYIFSGSILENLLLGAK---ENVSQDEIWAACE---IAEIKDD--IEN 596
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
TE E ISGGQK+R+ ++ +
Sbjct: 597 MPLGYQTELSEEGS-------------------------SISGGQKQRIALARALLTDSK 631
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISLLQPAPETYDLFDDIILLSDG 401
L +DE ++ LD+ T +IVN L +++ T V L A ++ D II+L G
Sbjct: 632 VLILDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHG 684
Query: 402 QIVYQGP-RELVLE--FFASM 419
+I+ QG EL+ F+AS+
Sbjct: 685 KIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 46/246 (18%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
HL + D++ + G + +LGP +GK+TLL +AG P SG + NG D
Sbjct: 13 HLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASP 67
Query: 224 P-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P +R + + Q +N +TV + + G+ P
Sbjct: 68 PAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+K A + ++ +GL + +SGGQ++RV +V
Sbjct: 100 --LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVREQ 148
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + +++ + Q + ++ + + + D ++ L +G+
Sbjct: 149 PILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNGR 207
Query: 403 IVYQGP 408
I QG
Sbjct: 208 IAAQGS 213
|
Length = 231 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 65/270 (24%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216
K+R + ++D+S I G + LG +GK+T L L G L PT SG V NG
Sbjct: 29 FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNG 85
Query: 217 HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
D P R + + M + L + E+L +
Sbjct: 86 KD-----PFRRREEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKLIYE-------I 128
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
PD D + + + D+ ++L L + + + R +S GQ+ R
Sbjct: 129 PD---DEFAERL-----------DFLTEILDL----EGFLKWPV-RKLSLGQRMRAELAA 169
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI- 395
++ P LF+DE + GLD + I L++ N LL T +FDDI
Sbjct: 170 ALLHPPKVLFLDEPTVGLDVNAQANIREFLKE---YNEERQATVLL-----TTHIFDDIA 221
Query: 396 ------ILLSDGQIVYQGPRELVLEFFASM 419
+L+ GQ+V+ G + E F
Sbjct: 222 TLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 69/290 (23%), Positives = 105/290 (36%), Gaps = 66/290 (22%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MD 220
+ + DV+ I+ G +L+GP SGKTT L + ++PT SG + +G D +D
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLD 69
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R Y+ Q +TV E +A + G
Sbjct: 70 PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK---------------------- 107
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ D L ++GLD D +SGGQ++RV V
Sbjct: 108 ------------ERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVG-----VA 147
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
ALA L MDE LD T Q+ ++ + G ++ + E L D I
Sbjct: 148 RALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKLADRI 206
Query: 396 ILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQ 444
++ G+IV P E++ P V DF E S + R
Sbjct: 207 AVMDAGEIVQYDTPDEIL---------ANPANDFVEDFFGE--SERGLRL 245
|
Length = 309 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 937
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 938 TFA---RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
T A R G Q D+ T+ E++ + P E EV E
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATRE-------EVEEAARAAN 116
Query: 995 LRQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
V + + RT H+ S I A D + +++ G
Sbjct: 177 VQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 77/287 (26%)
Query: 155 LRI-IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGT 211
L + P+ + + VS +K G + ++G SGK+ L A+ G L V G
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 212 VTYNGHDMDEFVPQRTA-------AYISQHD-----NHIGEMTVRETLAFSARCQGVGTR 259
+ ++G D+ + A I Q D N + MT+ + +A R G G
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQ-DPMTSLNPV--MTIGDQIAEVLRLHGKGLS 123
Query: 260 YEMLTELARRE-KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318
+ E A + GI PDP+ + Y
Sbjct: 124 KKEAKERAIELLELVGI-PDPE---------------RRLKSY---------------PH 152
Query: 319 EMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHIN 373
E+ SGG ++RV M+ ALA L DE +T LD + QI++ L++ +
Sbjct: 153 EL----SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQRE 202
Query: 374 SGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
GTA+I + T+DL D + ++ G+IV +GP E + +
Sbjct: 203 KGTALILI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA---RISGYCE 947
G+ TAL G SG+GKT+L++++AG R G I N + +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 948 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007
Q+ P T+ +L + W ++ + D+++ L+ + L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDRYPGT-- 128
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 46/186 (24%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 934 KKQETFA---RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
KK + R+ G Q +PF ++IY+++ + RL D K +DE++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG--PRLHGIKD----KKELDEIVE- 122
Query: 990 VELNPLRQSL--VGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+SL L GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 1039 DARAAA 1044
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 18/210 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQET 938
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 939 FARISGYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R++ + + F + E R +++ ++ ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVA--- 130
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 131 -QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1057 GRTVVCTIHQPSIDIFEAF-DELFLMKRGG 1085
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 30/193 (15%)
Query: 872 KVQG-VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT---G 925
K + LNG+S G ++G +GAGK+TL++ +AG T G I
Sbjct: 9 KTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV 68
Query: 926 NITISGYPKKQETFARI-----SGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVD 975
++T K+ AR+ +G P +TI E+L A R LS ++
Sbjct: 69 DVTKKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALN 120
Query: 976 SETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
R F + + L L +GL LS QR+ L++ + + P I+ +DE
Sbjct: 121 ERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEH 175
Query: 1035 TSGLDARAAAIVM 1047
T+ LD + A VM
Sbjct: 176 TAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-09
Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ--- 936
L ++ G AL+G SGAGKT+L++ L G ++ G++ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-L 995
E++ + + QN P T+ +++L P+ E + + +E ++ L
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFL 468
Query: 996 RQSLVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
GL +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ +
Sbjct: 469 PLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL 528
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
N +T + HQ ++ +D++++M+ G
Sbjct: 529 -NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 63/255 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DE-- 221
+ V+ ++ G + LGP +GKTT + L L PT SGT G+D+ +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
VPQ + ++T RE L R G L + E+A +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG-------LPKDEAEERAEEL-- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L++ L D + SGG ++R+
Sbjct: 109 -------------------------LELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
++ LF+DE +TGLD T I + +R G ++ E L D I +
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA--LKEEGVTILLTTHYMEEADKLCDRIAI 196
Query: 398 LSDGQIVYQG-PREL 411
+ G+I+ +G P EL
Sbjct: 197 IDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 47/216 (21%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 943 SGYCEQNDIHSPFVTIYESL---LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
DI + E +F A+ PE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1060 VVCTIHQPSIDIFEAFDELFLM------KRGGQEIY 1089
V+ H + + D + ++ K G +E+
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG 944
VS PG + ++G SG+GK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 945 YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI------------DEVMELVEL 992
+ + + + ++++ +R+S + R M I + +E VE+
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 993 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+P R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R
Sbjct: 138 DPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 1053 TV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
V D G V+ H + A L +M++G
Sbjct: 194 LVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ET 938
L+ VS RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R GY Q D + T+ +++ A P D E I EL + +
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRR 586
Query: 999 -------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+G G LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++
Sbjct: 587 HPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645
Query: 1052 NTVDTGRTVVCTIHQPSI 1069
+ G+T+V H+ S+
Sbjct: 646 RWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 14/211 (6%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFA 940
+L +S PG A++G +GAGKTTL+ +L G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 941 RISGYC--EQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ G E ++ T+ + +L F A + + E + ++EL+ L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 1054
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 6e-09
Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 947
F G +TA++G SG+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 948 QNDIHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 1001
+N++ +T+ ++ L S L+L+ E ++ ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1058
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG 1084
TV+ HQP D + + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 49/240 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEFVPQ 225
L +VS + GR+ LGP +GK+T + + G L P SG+V G D+ + Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY- 284
R Y+ +H+ +M VRE L F A +Y
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIA------------------------------GIYG 104
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
MK + + +I +++GL +G +S G ++RV + ++
Sbjct: 105 MKGQLLKQRVEEMI-----ELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKV 154
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE +TGLD + +I N ++ I +I E + D +I+++ G+IV
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-09
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
LK+ + + G +LG SGK+TLL LAG DP G++T NG ++ Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
T + ++Q H+ T+R+ L + PD D
Sbjct: 409 ALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDAS-D 441
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ A + ++ +T +G E R +SGG+++R+ ++ A
Sbjct: 442 EELWAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALLHDA 493
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIIL 397
+DE + GLD T Q++ L + H T ++ T+ L D II+
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIV 544
Query: 398 LSDGQIVYQGPRELVLE 414
L +G+I+ +G +L
Sbjct: 545 LDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 7e-09
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQET 938
+LNG+S G A++G SGAGK+T++ +L +G+ITI G Q++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQS 334
Query: 939 FARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
R G Q ND TI ++ + + EV + I + ++ L
Sbjct: 335 LRRAIGIVPQDTVLFND------TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLP 386
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + +R
Sbjct: 387 EGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE- 444
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 1096
V GRT + H+ S I +A DE+ ++ G + G H
Sbjct: 445 VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 48/216 (22%), Positives = 72/216 (33%), Gaps = 49/216 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V 223
T+ D+S + G + GP +GKTTLL LAG L P +G V + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ Y+ E+T E L F R G G + E + AG+
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-ATIWEALAQVGLAGL-------- 123
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
D + +S GQ++RV + + PA
Sbjct: 124 ---------------------------------EDLPVGQLSAGQQRRVALARLWLSPAP 150
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE T LD + + H G V+
Sbjct: 151 LWILDEPFTALDKEGVALLTALMAA--HAAQGGIVL 184
|
Length = 209 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 8e-09
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQET--FARISGYC 946
+ G TAL+G +G+GK+TL+ L G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
Q P ++E + + P+ + E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKD-VAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP 142
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 143 --FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 1064 IHQPSIDIFEAFDELFLMKRG 1084
H D+ + D ++L+++G
Sbjct: 201 THLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 9e-09
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG---YPKKQE 937
L G+ F +TAL+G SG GK+T + L G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 938 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ G Q PF +IYE++++ LRL+ D K +DE +E L
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKD----KAVLDEAVE----TSL 129
Query: 996 RQSLVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+Q+ + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 130 KQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 50/217 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F 222
+ + +S + G + GP GKTTLL LAG L P SG V +NG + E
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRD 69
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P R Y+ E++ E L F A G G + + LA
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAA-------------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+GL D +S GQ++R+ + + A
Sbjct: 115 -----------------------VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE +T LD + + LR H+ G V+
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 65/261 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEFV 223
+LKD++ IKPG ++GP +GKTTL+ L DP G + +G D+
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ + Q D + T+ E + +P+ +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------RPNATDEE 108
Query: 284 YMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEMIRG--ISGGQKKRVTTGEMMV 339
++A G ++ L G DT++G+ G +S G+++ + M+
Sbjct: 109 VIEAAKEAG------AHDFIMKLPNGY----DTVLGE---NGGNLSQGERQLLAIARAML 155
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
L +DE ++ +D+ T I L + + G I S ++ A D
Sbjct: 156 RDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLSTIKNA-------D 205
Query: 394 DIILLSDGQIVYQGPRELVLE 414
I++L DG+I+ +G + +L
Sbjct: 206 KILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-08
Identities = 49/218 (22%), Positives = 77/218 (35%), Gaps = 55/218 (25%)
Query: 835 AEAEASRPKKKGMVLPFEPHS-----LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 889
E K P L F+ V D +LL +S
Sbjct: 296 EERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD------------GGRLLLKDLSF 343
Query: 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQN 949
G A++G +GAGK+TL+ +LAG G ++G + + G K GY +Q+
Sbjct: 344 RIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-------IGYFDQH 393
Query: 950 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL--VGLPG--- 1004
+T + E + +R L G G
Sbjct: 394 --------------RDELD------PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ 433
Query: 1005 ---VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 65/257 (25%), Positives = 95/257 (36%), Gaps = 56/257 (21%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG P SG++ +G D+ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TV E +AF + + V E+ R A
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L+++ L D +SGGQ++RV +V P + L +DE + LD
Sbjct: 85 -LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASM 419
Q+ L+ I G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFRCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 26/207 (12%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 937
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 938 TF-------ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----ID 984
AR + Q P V+ E L + R S + E + +
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE-EPLDLLDFLKLLK 124
Query: 985 EVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+ L+ ++ L +S+ G S ++KR I + P + +DE SGLD A
Sbjct: 125 AKLALLGMDEEFLNRSV-----NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 1043 AAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
IV + + R+ + H +
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 44/194 (22%), Positives = 71/194 (36%), Gaps = 62/194 (31%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ +L+D++ ++ G +LGP GK+TLL +AG PT SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
Y+ Q D + +TV + +A +G RE+A
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKSKA-------EARERA------------ 111
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
L+++GL D +SGG ++RV A+A
Sbjct: 112 ---------------KELLELVGLAGFEDKYPHQ-----LSGGMRQRV---------AIA 142
Query: 345 ---------LFMDE 349
L +DE
Sbjct: 143 RALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 27/215 (12%)
Query: 876 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGNITI 929
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 930 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFID 984
+G P AR+ Q + + E +L + R + + ++
Sbjct: 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AW 127
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL---------VANPSIIFMDEPT 1035
+ + L L V+ LS + R+ A L P + +DEPT
Sbjct: 128 QALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSI 1069
+ LD ++ TVR V I H P++
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 944 ---GYCEQNDIHSPFV-TIYESLLFSAW-LRLSP-EVDSETRKMFIDEVMELVELNPLRQ 997
G Q+ F T+++ + F + L EV+ E ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVE-----EALKAVRMWDFRD 133
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1058 RTVVCTIH 1065
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 50/234 (21%)
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
G + ++GP +GK+TLL +AG ++P SG++ N P QR + + Q +N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TVR+ + G+ P +K A + ++
Sbjct: 81 LFAHLTVRQNIGL------------------------GLHPG------LKLNAEQQEKVV 110
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVTTGEMMVGPALALFMDEISTG 353
D + D + R +SGGQ++RV +V P L +DE +
Sbjct: 111 ------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158
Query: 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD +++ ++Q T ++ + + + I ++S G+I
Sbjct: 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
+L G+ + G + ++G SG+GK+TL+ + G I + ++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ G Q P +T+ E++ + ++ + ++E R +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER------ALELLEK--- 122
Query: 996 RQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ +
Sbjct: 123 ----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 1051 RNTVDTGRTVVCTIHQ 1066
++ + G T+V H+
Sbjct: 179 KDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 73/286 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMD 220
+LK +S ++ G + +++GP SGK+TLL L G +P SG++T +G D
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKK 70
Query: 221 EFVPQRT-AAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + R + Q N +TV E TLA ++ + KA +
Sbjct: 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLA--------------PVKVKKLSKAEARE- 115
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE- 336
KA+ L+ +GL AD D +SGGQ++RV
Sbjct: 116 --------KALE------------LLEKVGL---ADKA--DAYPAQLSGGQQQRVAIARA 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-F--- 392
+ + P + LF DE ++ LD ++++ ++ G +I + T+++ F
Sbjct: 151 LAMDPKVMLF-DEPTSALDPELVGEVLDVMKDL--AEEGMTMIIV------THEMGFARE 201
Query: 393 --DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
D +I + G+I+ +GP E EFF + PK + FL ++
Sbjct: 202 VADRVIFMDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G+S + G + ++G SG+GK+TL+ L G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV----MELVELNPLRQ 997
G Q P +T+ E++ L+P +K+ E +EL+E
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVT------LAPVK---VKKLSKAEAREKALELLEK----- 123
Query: 998 SLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
VGL + LS Q++R+ IA L +P ++ DEPTS LD V+ +++
Sbjct: 124 --VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 1053 TVDTGRTVVCTIHQ 1066
+ G T++ H+
Sbjct: 182 LAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-08
Identities = 76/288 (26%), Positives = 115/288 (39%), Gaps = 58/288 (20%)
Query: 154 YLRIIPSKKR--HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGT 211
YL I +KR T LKD+S +K G LLGP GKTTLL +AG T +GT
Sbjct: 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGT 60
Query: 212 VTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+ G D+ PQ R + Q +TV + +A+ + +G+G E
Sbjct: 61 IYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-------EVAE 113
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A L ++GL + +SGGQ++
Sbjct: 114 RVA---------------------------ELLDLVGL-----PGSERKYPGQLSGGQQQ 141
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
RV + P L L +DE + LD+ + +RQ + G I + E
Sbjct: 142 RVALARALATSPGL-LLLDEPLSALDARVREHLRTEIRQ-LQRRLGVTTIMVTHDQEEAL 199
Query: 390 DLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
+ D I++++ G I G P+E+ +R P VADF+ EV
Sbjct: 200 SMADRIVVMNHGVIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931
KV G K+ L VS + G + ++G SGAGK+TL+ + G + +G++ + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 932 Y------PKKQETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI 983
K+ R G Q N + S T++E++ + P+ + E R +
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALPLEIAGVPKAEIEER---V 121
Query: 984 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
E++ELV L + P + LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 122 LELLELVGLEDKADAY---P--AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 1044 AIVMRTVRNT-VDTGRTVVCTIHQ 1066
++ +R+ + G T+V H+
Sbjct: 177 QSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 937 ETFARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELV----- 990
IS Y E +HS + E +LF+ L+ + ++ + V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 991 -----ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1046 VMRTVRNTVDTGRTVVCTIHQ 1066
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 4e-08
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 44/186 (23%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L+GV+ +TALMG SG+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 943 SG--YCEQNDIHS--------------------PFVTIYESLLFSAWLRLSPEVDSETRK 980
SG Y + DI P ++I+E++ L+L+ V S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 981 MF--IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ + +E +L + + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 1039 DARAAA 1044
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 35/243 (14%)
Query: 855 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 912
++ FD V Y P E + ++ V+ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 913 VLAG--RKTGGYIT-GNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESLLFSAW 967
+ + T G +T +ITI+ K + + G Q ES LF
Sbjct: 52 NINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ---------FPESQLFEDT 102
Query: 968 LRLSPEVDSETRKMFIDEVME-----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1022
+ + KM +DEV L++L R + P +S Q +++ I L
Sbjct: 103 VEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSIL 160
Query: 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +M
Sbjct: 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219
Query: 1082 KRG 1084
K G
Sbjct: 220 KEG 222
|
Length = 286 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 6e-08
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 47/240 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+D++ ++ G L ++LGP GKTTLL +AG + G++T +G ++ P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + V++ +AF + GV R E A
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM-------QRLEIA-------------- 109
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
+ LK +GL+ I +SGGQ++RV + L
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQIV 404
+DE LD+ T Q+ L + +G V+ + E + +++LLS G++V
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 37/167 (22%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETFARIS-G 944
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 945 YCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR------- 996
Q +PF ++IYE++ + LR D K +DEV+E LR
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKD----KKVLDEVVE----RSLRGAALWDE 134
Query: 997 -QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+ + GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 135 VKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 60/259 (23%), Positives = 93/259 (35%), Gaps = 65/259 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
++ +S ++ G LLGP +GKTT L L G P +G+++ G E VP
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPS 73
Query: 226 RT------AAYISQHDNHIGEMTVRETLAFSARCQGVGT-----RYEMLTELARREKAAG 274
R + Q DN + TVRE L R G+ L E A+ E A
Sbjct: 74 RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA- 132
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
D + +SGG K+R+T
Sbjct: 133 -------------------------------------------DAKVGELSGGMKRRLTL 149
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE +TGLD + LR + G ++ E L D
Sbjct: 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS--LLARGKTILLTTHFMEEAERLCDR 207
Query: 395 IILLSDGQIVYQG-PRELV 412
+ ++ +G+ + +G P L+
Sbjct: 208 LCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ ++S + PG + LLGP +GKTT + G L+PT G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
R Y+ + +MTV + L + A +G+
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM 102
|
Length = 300 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 7e-08
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
IL ++S IKPG + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q +N + ++R+ +A + DP + +
Sbjct: 74 LRRQVGVVLQ-ENVLFNRSIRDNIALA---------------------------DPGMSM 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
EA + + + L DT+VG++ G+SGGQ++R+ ++
Sbjct: 106 E------RVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPR 158
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L DE ++ LD + I+ +N+H I +G VI ++ T D II++ G+
Sbjct: 159 ILIFDEATSALDYESEHAIM----RNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGR 213
Query: 403 IVYQGPRELVL 413
IV QG + +L
Sbjct: 214 IVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 54/221 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L DVS I+ G L GP +GKTTLL L G L P+ G V G D++ R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + D + + TV E +A +G R E+ RR AA
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
L+ +GL+ AD +SGG+++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
P L L DE + LD + +I++ L++ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 7e-08
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 37/198 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GNITISGYPKKQETF 939
L +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLH---- 74
Query: 940 ARISGYCEQNDIHSPFVTI-YESLLFSAWLR--LSPE---VDSETRKMFIDEVMELVELN 993
D+ S I + +LFS +R L P D E + + +E V L
Sbjct: 75 ----------DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGLK 119
Query: 994 PLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+SL G G LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 1048 RTVRNTVDTGRTVVCTIH 1065
+T+R TV+ H
Sbjct: 180 KTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 35/173 (20%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG---YPKKQETFA 940
V+ P +TA +G SG GK+T++ L G + G + + G Y + A
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 941 --RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R G Q P ++I ++++ A L+L+ K +DE++E +S
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLN----GVRNKKDLDELVE--------KS 128
Query: 999 LVG------------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L G PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 129 LRGANLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 8e-08
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--- 220
T+L DVS I+ G + LLGP SGK+TLL +AG +P SG++ +G D+
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLE 68
Query: 221 -EFVPQRTA-AYISQHDNHIGEMTVRETLAF 249
E P R + Q +TV E +A
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 8e-08
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
LL +S G L L G +GAGKTTL+ ++AG G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 943 SGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
C ++ I +P++T+ E+ L+ ++ + I E+ L L L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1060 VVCTIHQ 1066
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Query: 867 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
M E+K G L +LN +S + R G A+ G SG GK+TL+ ++A T G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 925 --GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF 982
G +S K E + + YC Q T+ ++L+F +R R
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAA 113
Query: 983 IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+D L+ L S++ ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD----LLARFALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 1043 A----AIVMRTVRNTVDTGRTVVCTIHQP 1067
++ R VR + V+ H
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 57/247 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V 223
+L D+S +K G + LGP +GKTT + + G + P SG +T++G +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R A I + +T RE L AR G+ ID
Sbjct: 71 LRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKRIDE 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PA 342
L V+GL + ++G S G K+R+ ++G P
Sbjct: 110 ------------------VLDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLGNPD 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS--LLQPAPETYDLFDDIILLSD 400
L L +DE + GLD ++ + ++ T +IS LL E + D I +++
Sbjct: 147 L-LILDEPTNGLDPDGIKELRELIL-SLRDQGITVLISSHLLS---EIQKVADRIGIINK 201
Query: 401 GQIVYQG 407
G+++ +G
Sbjct: 202 GKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 54/256 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L+ +S ++ G ++GP SGK+TL + G PT SG+V +G D+ ++ +
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRE 388
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ Y+ Q D + TV E +A R+ G DP+
Sbjct: 389 TFGKHIGYLPQ-DVELFPGTVAENIA----------RF-------------GENADPE-- 422
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
K I EA + + +L L DT++G +SGGQ++R+ + G
Sbjct: 423 ---KII-----EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQRIALARALYGDP 473
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDIIL 397
+ +DE ++ LD + N ++ + T V+ SLL D I++
Sbjct: 474 KLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPSLLGCV-------DKILV 525
Query: 398 LSDGQIVYQGPRELVL 413
L DG+I G R+ VL
Sbjct: 526 LQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 32/186 (17%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFARISGYCEQN 949
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 950 DIHS-----PFVTIYESLL-----FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
H P +++ +++ WLR D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1060 VVCTIH 1065
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L+G++ RPG AL+G SGAGK+TL +L + +G I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQ------- 406
Query: 944 GYCEQNDIHSPFVTI-YESLLFSAWLR----------LSPEVDSETRKMFIDEVMELVEL 992
+ ++ + + + +LF+A + EV++ R E + L
Sbjct: 407 --LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--AL 462
Query: 993 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + +
Sbjct: 463 PEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-E 520
Query: 1053 TVDTGRTVVCTIHQ 1066
T+ GRT + H+
Sbjct: 521 TLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+ ++++ I G T ++GP GK+TLL L+ + P G V +G + + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A I +Q+ G++TV+E +A RY R K D +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG--------RYPHQPLFTRWRKE-------DEE 122
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
KA+ G IT + D+ + +SGGQ++R ++
Sbjct: 123 AVTKAMQATG-----ITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD S ++ L + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELV 412
IV QG P+E+V
Sbjct: 222 IVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-NITISGYPKK 935
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+E + G Q P +TI ++ L + RK ++ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL--- 116
Query: 996 RQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
VGL LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 1051 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
+ T +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQET 938
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 939 FARISGYCEQ 948
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 71/280 (25%), Positives = 109/280 (38%), Gaps = 70/280 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
+ +++ I G +L+GP SGKTT + + ++PT SG + +G D+ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 225 QRTAAYISQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R Y+ Q IG MTV E +A + + RE+A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWP-------KEKIRERA--------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
D L ++GLD D +SGGQ++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
ALA L MDE LD T Q+ + + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQE 435
++ +G+IV G P E+ R P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 51/205 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
+L +V+ I G + L+GP GK+TLL + G L +G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
QR + Q ++V + L F+ A +K
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFAL--------------------PATLK-------- 107
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
G + L+ GLD +SGGQ+ RV ++ A
Sbjct: 108 -------GNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQN 369
L +DE + LD + LR
Sbjct: 156 LLLDEPFSRLDVA--------LRDQ 172
|
Length = 213 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFAR 941
L V+ PG + AL+G +GAGK+TLM VL+G G ITI+ Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 942 ISG----YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
G Y E + I +T+ E+L L T+K+ +++ E+
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIGRHL---------TKKVCGVNIIDWREMRVRAA 127
Query: 998 SL---VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 1046
+ VGL V+ LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
M +R G +V H+ + +I D +MK G
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 71/261 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSG-TVTYNGHDMDEFV 223
LK ++ + G + LLGP +GK+TL L G L PT + + G + Y+ + E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++T + Q+ D+ + TV E +AF G+ E+ +R K A
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGP 341
+KA+ EG E ++ +SGGQKKRV G + + P
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCL----RQNIHINSGTAVISLLQPAPETYDL------ 391
+ + +DE ++GLD QI+ L ++ I T +IS T+D+
Sbjct: 157 EI-IVLDEPTSGLDPMGASQIMKLLYDLNKEGI-----TIIIS-------THDVDLVPVY 203
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D + ++SDG+I+ +G P+E+
Sbjct: 204 ADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 52/276 (18%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF- 222
+L D+S I G++ LLGP SGKTTLL +AG T SG + ++G D+
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLH 70
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R ++ QH MTV + +AF LT L RRE+ P+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAA 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGP 341
+ L+++ L AD +SGGQK+RV + V P
Sbjct: 112 AIKAKVTQ-----------LLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEP 155
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ L +DE LD+ ++ LRQ +H + + E ++ D ++++S G
Sbjct: 156 QI-LLLDEPFGALDAQVRKELRRWLRQ-LHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213
Query: 402 QIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
I G P ++ +R P + V +F+ EV
Sbjct: 214 NIEQAGTPDQV---------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPKK 935
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 936 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
R G Q +PF +IYE++ + P + E K +D ++E
Sbjct: 82 VVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE------ 127
Query: 995 LRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
+SL G LS Q++RL IA L NP +I MDEP S LD A
Sbjct: 128 --KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 1044 A 1044
A
Sbjct: 186 A 186
|
Length = 253 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 934 KKQET--FARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 990
K + + G Q +PF +I+E++ + LR++ D+ + ++E ++
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGA 130
Query: 991 EL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A
Sbjct: 131 ALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAK 184
Query: 1046 V 1046
V
Sbjct: 185 V 185
|
Length = 250 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 45/188 (23%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L V +TA +G SG GK+T + D + G + +TG IT+ G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 934 KKQ---ETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETR-KMFIDEVME 988
+ E AR+ G Q +PF +IYE++ + P + R K +DE++E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 989 LVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
LR++ GL PG +GLS Q++RL IA + +P +I MDEP S L
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194
Query: 1039 DARAAAIV 1046
D A A V
Sbjct: 195 DPIATAKV 202
|
Length = 267 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 48/202 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL ++S ++ G L+ GP GK+TLL +A + PT SGT+ + G D+ P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDP--- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ L+ L DT++ + I +SGG+K+R++ +
Sbjct: 115 ---AIFLDD-----------LERFALP---DTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 343 LALFMDEISTGLDSSTTFQIVN 364
L +DEI++ LD S VN
Sbjct: 157 KVLLLDEITSALDESNK-HNVN 177
|
Length = 225 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 320 MIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378
+ +SGGQ++RV ++ P L L +DE ++GLD ++ +++ LR+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 379 ISLLQPAPETYDLFDDIILLSDGQ 402
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 3e-07
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FARIS-GYC 946
F +TA +G +GAGKTT + +L G +G + + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006
Q++I +T+ E +LF A L+ E ++ ++ ++E L+ R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 1063
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 1064 IHQ 1066
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 27/193 (13%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L++VS + PG L+G +GK+TLL LAG+L+P SG VT V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVT---RPKGLRV-- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+SQ E TV + + +G G E+L EL D +
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 286 KAIATEGQ---EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ EA L LG D V +SGG ++RV ++
Sbjct: 121 ALLEELDGWTLEARAEEA--LLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEP 172
Query: 343 LALFMDEISTGLD 355
L +DE + LD
Sbjct: 173 DLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 39/227 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 942 ISGYCEQNDI---HSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDE----------VM 987
S +N I H + + S++ + WL P T+ MF+D+
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP-----TKGMFVDQDKMYRDTKAIFD 120
Query: 988 EL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
EL ++++P + V+ LS Q + + IA N I+ MDEPTS L + +
Sbjct: 121 ELDIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093
+R + G +V H+ +IF+ DE+ ++ R GQ I PL
Sbjct: 174 FTIIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP------KKQ 936
+L VS + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 937 ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
F R Q+ + P +T+ + + LR +D +K I E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------KK 935
+L+ VS + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
E + G+ Q P T E++ + + +R + E++ V L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRAL---EMLAAVGLEHR 138
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 139 ANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 58/254 (22%)
Query: 855 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 912
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 913 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972
+G ITI+GY ET G + SL+F P
Sbjct: 52 HFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKV-----SLVFQF-----P 94
Query: 973 EVDSETRKMFIDEVMELVELNPLR----------QSLVGLPGVSGLSTE----------- 1011
E ++F + V++ VE P ++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 1012 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1070
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-D 207
Query: 1071 IFEAFDELFLMKRG 1084
+ E D++ +++ G
Sbjct: 208 VAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGN-ITISGYPKKQET 938
L GV+ + G +L+G SG GK+TL+++++G + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
F QN P++T+ E++ A R+ P++ R+ ++E + LV L ++
Sbjct: 60 F--------QNYSLLPWLTVRENIAL-AVDRVLPDLSKSERRAIVEEHIALVG---LTEA 107
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1057
PG LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 108 ADKRPG--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1058 RTVVCTIHQPSIDIFEAFDELFLMKR 1083
TV+ H D+ EA L L R
Sbjct: 166 VTVLMVTH----DVDEA---LLLSDR 184
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
L VS P +T L+GP SGK+TLL ++ L+P + ++G++ YNGH++ D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N M++ E + + R +G+ + + + + K A I +
Sbjct: 81 TVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK 139
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
++ A+ G+SGGQ++RV ++
Sbjct: 140 DRLHDSAL----------------------------------GLSGGQQQRVCIARVLAT 165
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ +DE ++ LD + +I
Sbjct: 166 SPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 61/212 (28%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLL--LALAGKLDPTLKVSGTVTYNGHD-----M 219
LKD++ I ++T L+GP GK+TLL L L P +V G V +G + +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR-EKAAGIKPD 278
D +R + Q N M++ + +A+ R G+ + + L E+ K A
Sbjct: 82 DVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGI--KDKELDEIVESSLKKA----- 133
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVTTG 335
A+ E V D + + G+SGGQ++R+
Sbjct: 134 --------ALWDE------------------------VKDRLHKSALGLSGGQQQRLC-- 159
Query: 336 EMMVGPALA-----LFMDEISTGLDSSTTFQI 362
+ ALA L MDE ++ LD +T +I
Sbjct: 160 ---IARALAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD--------MD 220
+DVS + PG + ++G SGK+TLL LAG+L P GT TY +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
E +R ++ Q+ M V R +G R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
Y AT D+ +V ++ + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
+V P L +FMDE + GLD S ++++ LR + + G AVI + L +
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRL 219
Query: 396 ILLSDGQIVYQGPRELVLE 414
+++ G++V G + VL+
Sbjct: 220 LVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 55/259 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K+ +L +VS I+ G LLG GK+TL L G P GTV++ G D+
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLY 76
Query: 221 EFVP------QRTAAYISQHDNHIG----EMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+ +R + Q + MTVR+ + R L E ++
Sbjct: 77 QLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVRQIIGEPLR------HLTSLDESEQKA 128
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A + L ++GL ++ D++ R +SGGQ +
Sbjct: 129 RIAEL---------------------------LDMVGLR--SEDA--DKLPRQLSGGQLQ 157
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
R+ + V P L + +DE + LD I+ LR+ + GTA + +
Sbjct: 158 RINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHDLRLVQ 215
Query: 390 DLFDDIILLSDGQIVYQGP 408
+ ++ GQIV +
Sbjct: 216 SFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 68/277 (24%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
K L +VS I+ G ++G SGK+TL LAG P+ SG++ +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGK 69
Query: 218 DMDEFVPQRTAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREK 271
+ + + Q + + TV L+ R G+ + + EL +
Sbjct: 70 PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ-- 127
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
G+ P + ++ G GQ++R
Sbjct: 128 -VGLPPS------------------FLDRRPHELSG-------------------GQRQR 149
Query: 332 VTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQN--------IHINSGTAVISLL 382
+ ++ P L L +DE ++ LD S QI+N L + + I+ A++
Sbjct: 150 IAIARALIPEPKL-LILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV--- 205
Query: 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419
+ D I ++ +GQIV GP E +L +
Sbjct: 206 ------EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+ VS + G +T +LG GKTTLL L G L SG++ +G D+ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETL 247
A AY+ Q +TV E L
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 5e-07
Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 44/254 (17%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
+K+V+ ++ G + L+GP GKTT L A+ L P +V+G + +G D+ D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N M+V + + + G+ R + L E+A R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWD-E 137
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ +K AT G+SGGQ++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE ++ LD ++T +I + + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETF 939
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G+ Q+ +T+++++ F L + P + +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 57/192 (29%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L + + VL + GVSG+GK+TL+
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV-------------------------------- 38
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSL 999
+Y S A L S + +FID++ L+++ L Q L
Sbjct: 39 -----------NEGLYASG--KARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1058 RTVVCTIHQPSI 1069
TV+ H +
Sbjct: 140 NTVILIEHNLDV 151
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 60/188 (31%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L ++ +TAL+G SG GK+T + D++ K I G + + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 937 ETFARISGYCEQNDIHS-------------PF-VTIYESLLFSAWLRLSPEVDSETRKMF 982
+ Y D++ PF ++IY+++ + P K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAY------GPRTHGIKDKKK 118
Query: 983 IDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031
+DE++E L+ + + L GLS Q++RL IA L P ++ M
Sbjct: 119 LDEIVE----KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1032 DEPTSGLD 1039
DEPTS LD
Sbjct: 171 DEPTSALD 178
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 30/164 (18%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGY----PKKQETFARIS- 943
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL---NPLRQS 998
G Q P ++IY+++ F P + K +D ++E L + + ++
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSKHKLDRIVEESLKKAALWDEVKSE 139
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
L PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 140 L-NKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+ ++ ++PG + ++GP SGK+TL LAG+ D + GTV + G D+ E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
A GE +AF GV ++ + T L G +P D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPA 342
+++ + K+ L + D + + G SGG+KKR +M V P
Sbjct: 121 -----------QDLMEE---KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 343 LALFMDEISTGLD 355
L + +DE +GLD
Sbjct: 166 LCI-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 6e-07
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGNITISGYPKKQET 938
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ +T +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 939 FARISGYCEQNDIHS-----PFVTIYESLLF-----SAWLRLSPEVDSETRKMFIDEVME 988
A I IH P +TI E++ + + R+ + +KM+ +
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
L LN LR S L V LS +++ + IA L +I MDEPT L + R
Sbjct: 126 LARLN-LRFSSDKL--VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182
Query: 1049 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088
+R GR +V H+ +IFE D++ + R GQ I
Sbjct: 183 VIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 44/231 (19%)
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
G +T ++GP SGK+TLL +AG P SG V NG D+ P R + + Q +N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TV + + G+ ++ E R+ + K + E
Sbjct: 81 LFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+SGG+++RV ++V L +DE LD
Sbjct: 129 ---------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ ++++ L ++H + V+ + + L ++ L +G+I QG
Sbjct: 162 ALRAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 23/235 (9%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNITISGYPKKQET 938
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 939 F-ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1054
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGPLGRHSCHLIS 1102
G ++ H + + DE+ +M G +EI+ P + L+S
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 66/218 (30%), Positives = 97/218 (44%), Gaps = 41/218 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L VS + G A++G +G+GK+TL +L G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 942 IS---GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ G QN + FV T+ + + F E + +E++E V+ LR
Sbjct: 79 VRRQVGMVFQNP-DNQFVGATVQDDVAFGL----------ENIGVPREEMVERVD-QALR 126
Query: 997 QSLVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
Q VG+ P LS Q++R+ IA L P II +DE TS LD R V+ T
Sbjct: 127 Q--VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLET 182
Query: 1050 VRNTVDTGR-TVVCTIHQPSIDIFEAF--DELFLMKRG 1084
VR + TV+ H D+ EA D + +M +G
Sbjct: 183 VRQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 8e-07
Identities = 70/285 (24%), Positives = 115/285 (40%), Gaps = 77/285 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
LK+++ I ++T L+GP GK+TLL +L L P +++ G V ++G D+ D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE-KAAGIKPDP 279
+R + Q N M++ + +A+ R G+ + E L E+ K A + D
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKE-LDEIVEESLKKAAL-WDE 133
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D L L G+SGGQ++R+ +
Sbjct: 134 VKD-------------------RLHDSAL--------------GLSGGQQQRLC-----I 155
Query: 340 GPALA-----LFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVI---SLLQPAPET 388
ALA L +DE ++ LD T +I + L++ T VI ++ Q A +
Sbjct: 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKY-----TIVIVTHNMQQAARIS 210
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
D DG++V GP E + F PK K D++
Sbjct: 211 ----DRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 8e-07
Identities = 68/276 (24%), Positives = 109/276 (39%), Gaps = 48/276 (17%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVP 224
L D+ +K G T L+G SGK+TLL L G L PT + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 QRTAAYISQH--DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++A I L+++GL ++ +SGGQ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + GLD +++ L ++IH SG V+ + + D D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFASMGFRCPKRKGVADFLQE 435
I+ G P ++ E F + PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 59/252 (23%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDE-FVPQRT 227
D++ +K G + L+G SGK+ LA+ G L P L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
A I Q N T+ A E L L + K A +A
Sbjct: 64 IATIMQ--NPRTAFNPLFTMGNHAI--------ETLRSLGKLSKQA------------RA 101
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA--- 344
+ E EA +GL + + + +SGG +R +M+ AL
Sbjct: 102 LILEALEA----------VGLPDPEEVL--KKYPFQLSGGMLQR-----VMIALALLLEP 144
Query: 345 --LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDII 396
L DE +T LD +++ LR+ + GT ++ + T+DL D++
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLRE-LRQLFGTGILLI------THDLGVVARIADEVA 197
Query: 397 LLSDGQIVYQGP 408
++ DG+IV +G
Sbjct: 198 VMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 8e-07
Identities = 62/283 (21%), Positives = 100/283 (35%), Gaps = 93/283 (32%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD----- 218
L L +VS I G ++G SGKTT + L L P +GT+ + D
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKK 75
Query: 219 --------MDEFVPQRTAA----YISQHDNHIG-----------EMTVRETLAFSARCQG 255
+++ V Q+T I + +G E T+ + + F G
Sbjct: 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG 135
Query: 256 VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315
V +EA Y++++GLD
Sbjct: 136 V----------------------------------SKEEAKKRAAKYIELVGLDE----- 156
Query: 316 VGDEMIR---GISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
+ R +SGGQK+RV G + + P L DE + GLD +I+ N++
Sbjct: 157 --SYLQRSPFELSGGQKRRVALAGILAMEPDF-LVFDEPTAGLDPQGVKEILEIF-DNLN 212
Query: 372 INSGTAVISLLQPAPETYDLFDDI-------ILLSDGQIVYQG 407
T ++ T+DL D++ I DG+I+ G
Sbjct: 213 KQGKTIILV-------THDL-DNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 8e-07
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 896 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQETFA--RISGYCE 947
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 948 QNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV--------EL-NPLRQ 997
Q +PF ++IY+++ + P + K +D+++E E+ + L++
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 86/298 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK ++ IK G +T +LG +GK+TL L G L P SG + ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPID------- 71
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
Y + G M +RE+ VG ++ DPD ++
Sbjct: 72 --YSRK-----GLMKLRES---------VGMVFQ----------------DPDNQLF--- 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTM---VGDEMIR-GI-----------SGGQKKRV 332
A+V D + L + D + V + + R GI S GQKKRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL- 391
++V L +DE + GLD +I+ L + T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 392 -----FDDIILLSDGQIVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQEVTSRKD 441
D++ ++ +G+++ QG P+E+ E + R P R G L E+ KD
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP-RIG---HLMEILKEKD 257
|
Length = 283 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-07
Identities = 36/162 (22%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L PT SGT+ +G D ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
F R E L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 308 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDE 349
L D + SGGQK+RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM---DEFV 223
ILKD+S + G + ++GP +GK+TL+ + +DPT G++ +G D+ D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
E NV +YYL ++GL+ T ++ +SGG+ +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD ++T +I+ L + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 V 404
V
Sbjct: 211 V 211
|
Length = 241 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 9e-07
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 941
L G+S + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 942 ISGYCEQNDIHSPFVTIYESL-LFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPL 995
I+ Y E + + + + LFSA LR +P E + EV++ V L L
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA----LIEVLQQVGLEKL 458
Query: 996 RQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
+ GL G G LS +++RL IA L+ + ++ +DEPT GLDA ++ +
Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+TV+ H+ + E FD + +M G
Sbjct: 519 A-EHAQNKTVLMITHR--LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHD 218
ILK V+ IK G + L+GP SGK+TL + G P +V G + + G D
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGED 65
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL ++S ++ G + GP GK+TLL +A + PT SGT+ + G D+ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ +Y +Q G+ TV + L F + R +PD
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ--------------IRNR-----RPDRAA-- 112
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPA 342
A+ L L D+++ + I +SGG+K+R+ + P
Sbjct: 113 ---ALD------------LLARFALP---DSIL-TKNITELSGGEKQRIALIRNLQFMPK 153
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ L +DEI++ LD S I + + + AV+ + + D +I L G
Sbjct: 154 I-LLLDEITSALDESNKRNIEEMIHRYVR-EQNVAVLWITHDKDQAIRHADKVITLQPGH 211
Query: 403 I 403
Sbjct: 212 A 212
|
Length = 223 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK V+ I+ G L+G GK+TLL ++G PT SG V G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
+ Q+ + + +TVRE +A + +L +L++ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG K+RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
DE LD+ T + L Q I V+ + E L D +++L++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 41/219 (18%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGNITISGYPKK 935
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR--LSPEVDSETRKMFIDEVMELVELN 993
+R+S + + + +LFS +R L PE +++ E +E+ +L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 994 PLRQSLVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ +SL G G+ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + V T RTVV H+ S I +A D + ++ RG
Sbjct: 195 LQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 1e-06
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1068 SIDIFEAFDELFLMKRG 1084
++FE D + +++ G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP------KK 935
LN VS + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 936 QETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
++ F R Q+ I + P T+ E + LR +D R E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 34/236 (14%)
Query: 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
FD+V +S D QGV VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 917 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF----SAWLRLSP 972
++ +G I I G I + + V ++ LF +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 973 E--VDSETRKMF-IDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028
D E R + + +E P ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +DE TS LD A V + + + GRT H+ S + A D + + G
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDNG 545
|
Length = 588 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISG 944
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 945 -YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
+ + N +P + I + LRL+ +++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 31/183 (16%)
Query: 874 QGVLE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGN 926
+G+L+ D V++ +S RPG L+G SG+GK+T L+ ++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 927 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSE 977
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 978 TRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036
R+ + VME V L+P R P + S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDPETRHRY---P--AEFSGGQRQRIAIARALILKPSLIILDEPTS 454
Query: 1037 GLD 1039
LD
Sbjct: 455 SLD 457
|
Length = 529 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 38/230 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ--ET 938
+N S G + +MG+SG+GK+TL+ +L T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
+ Q+ P T+ E++ F ++ P+ + E R + E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERAL---EALELVGLEGYADK 160
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRN 1052
LS ++R+ +A L +P I+ MDE S LD ++RT +
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLEL 210
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 1092
+T+V H D+ EA D + +MK G +EI + P
Sbjct: 211 QAKLKKTIVFITH----DLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
|
Length = 386 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 51/200 (25%), Positives = 71/200 (35%), Gaps = 62/200 (31%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++ +S + G LLGP +GK+T+ + G P +G +T + VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTR-----YEMLTELARREKAAGI 275
+ Q DN E TVRE L R G+ TR L E AR E
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK--- 165
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
AD V D +SGG K+R+T
Sbjct: 166 ------------------------------------ADARVSD-----LSGGMKRRLTLA 184
Query: 336 EMMVGPALALFMDEISTGLD 355
++ L +DE +TGLD
Sbjct: 185 RALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 67/255 (26%), Positives = 96/255 (37%), Gaps = 55/255 (21%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++ D+S I G LLGP +GK+T+ L G + P G +T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ Q DN E TVRE L R G+ T RE A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----------REIEAVIPS--- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L+ L+ AD V +SGG K+R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L +DE +TGLD I LR + G ++ E L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRS--LLARGKTILLTTHFMEEAERLCDRLCVLES 210
Query: 401 GQIVYQG-PRELVLE 414
G+ + +G P L+ E
Sbjct: 211 GRKIAEGRPHALIDE 225
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 71/254 (27%), Positives = 105/254 (41%), Gaps = 52/254 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
ILK +S ++ G ++GP SGK+TL L G PT SG+V +G D+ ++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDR-- 405
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPDPDIDVYM 285
Q HIG + Q V EL A I + + D
Sbjct: 406 -----EQLGRHIGYLP-----------QDV--------ELFDGTIAENIARFGEEADPE- 440
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PALA 344
K I EA + + +L L DT +G+ +SGGQ++R+ + G P L
Sbjct: 441 KVI-----EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL- 493
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDIILLS 399
+ +DE ++ LDS + + GT V+ S L D I++L
Sbjct: 494 VVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILVLQ 545
Query: 400 DGQIVYQGPRELVL 413
DG+I GPRE VL
Sbjct: 546 DGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 944 GYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSL 999
Q + S V ++ + + A+ R +E + + V+ PL +
Sbjct: 406 ---RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T 1056
+G GV LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 463 IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLMQ 517
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
GRT + H+ S E D + +M G
Sbjct: 518 GRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 32/191 (16%)
Query: 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 947
G + A++G SGAGK+TL++++AG +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 948 QNDIHSPFVTIYESLLF--SAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 1001
+N++ + +T+ +++ S L+L+ E V++ ++ + ++
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR------------ 125
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTG 1057
LPG LS QR+R+ +A LV I+ +DEP S LD RA M + + + +
Sbjct: 126 LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERK 180
Query: 1058 RTVVCTIHQPS 1068
T++ H P
Sbjct: 181 MTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L V ++ G L L+GP +GKTTLL A+ G L PT +GTV G D V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD----VEA 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR---REKAAGIKPDPDID 282
+A S+ + + T +L+F + V E+ R R +
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQV-------VEMGRTPHRSRFDTWTETDRAA 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
V +A+ G D + +SGG+++RV +
Sbjct: 120 V-ERAMERTGVAQFA--------------------DRPVTSLSGGERQRVLLARALAQAT 158
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + + +R+ ++ G ++ + D+++LL+DG+
Sbjct: 159 PVLLLDEPTASLDINHQVRTLELVRR--LVDDGKTAVAAIHDLDLAARYCDELVLLADGR 216
Query: 403 IVYQGPRELVL 413
+ GP VL
Sbjct: 217 VRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 69/276 (25%), Positives = 108/276 (39%), Gaps = 76/276 (27%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---- 222
IL +S I G+ ++G +GK+T+L L D SG++T +G D+ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 223 -------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
VPQ T + T+A++ + E + A +AA
Sbjct: 335 LRRAIGIVPQDTVLFND-------------TIAYNIKYGRPDATAEEVGAAA---EAA-- 376
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVT 333
Q + I L DT VG+ RG +SGG+K+RV
Sbjct: 377 -----------------QIHDFIQS-------LPEGYDTGVGE---RGLKLSGGEKQRVA 409
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETY 389
++ L +DE ++ LD+ T I LR+ T VI S + A
Sbjct: 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLSTIIDA---- 464
Query: 390 DLFDDIILLSDGQIVYQGPRELVLE---FFASMGFR 422
D+II+L +G+IV +G E +L +A M R
Sbjct: 465 ---DEIIVLDNGRIVERGTHEELLAAGGLYAEMWRR 497
|
Length = 497 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGN-ITISGYPKKQETFARISGYCEQND 950
G + A+MG SGAGK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 951 IHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004
+T+ ++ L L+L+ E V +++ I + ++ LP
Sbjct: 82 F--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR------------LPE 127
Query: 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCT 1063
LS QR+R+ +A LV I+ +DEP S LD ++ V+ RT++
Sbjct: 128 --QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV 185
Query: 1064 IHQPS 1068
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 2e-06
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPK 934
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 935 KQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVEL 992
E F R G Q +PF ++I +++L +L P E R + + E+
Sbjct: 96 VLE-FRRRVGMLFQRP--NPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLW 150
Query: 993 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+ ++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 151 DAVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
Query: 1053 TVDTGRTVVCT 1063
D ++ T
Sbjct: 209 LADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 58/234 (24%)
Query: 861 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 920
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 921 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSP 972
G I I G + P + SL LFS +R +
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRG 1084
E T+ +D A++ +T+R T T++ H + ID +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DEFVPQRTAAY 230
+ G L + GP +GKT+LL LAG P +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 231 ISQHDNHI-GEMTVRETLAFSARCQGVGTRYEMLTELAR 268
+ H I E+T E L F R G G + LA+
Sbjct: 79 LG-HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 70/248 (28%), Positives = 101/248 (40%), Gaps = 66/248 (26%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP---TLKVSGTVTYNGHDMDEFVPQRTAAYISQ 233
G L LLGP +GKTTLL A+ G + P T+KV+G G +VPQR
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 234 H----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------ 93
Query: 290 TEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA----- 344
L+ +GL AD VG+ +SGGQ++RV +V ALA
Sbjct: 94 ---------VRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSV 134
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE TGLD T + + +GTA++ + D ++LL +G+++
Sbjct: 135 LLLDEPFTGLDMPTQELLTELFIE--LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191
Query: 405 YQG-PREL 411
G P++L
Sbjct: 192 ADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 56/247 (22%), Positives = 99/247 (40%), Gaps = 53/247 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L ++ ++PG L+GP +GK+TL L DP SG + +G D+ + P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP-DIDVY 284
R + D + +V E + + +PD D +V
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYG-------------------------RPDATDEEVE 447
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A A E + L DT +G+ + +SGGQ++R+ ++ A
Sbjct: 448 AAARAAHAHEF---------ISALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPI 497
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ + Q+V + + T +I + + A D I+++
Sbjct: 498 LLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRLATVLKA-------DRIVVMDQ 549
Query: 401 GQIVYQG 407
G+IV QG
Sbjct: 550 GRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 40/215 (18%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG----- 931
+EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 11 VEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 932 ----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975
YP I G Q + + + R +D
Sbjct: 70 LSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLD 116
Query: 976 SETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
+ ++E + L+++ L V + G S ++KR I V P + +DE
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
SGLD A IV V + D R+ + H I
Sbjct: 173 DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP-KKQ-E 937
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 938 TFARISGYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ + Y Q I +T E+L F RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 997 QSL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1050 VRNTVDTGRTVVCTIHQP 1067
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 44/277 (15%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---LALAGKLDPTLKVSGTVTYNGHDMDE 221
LT+L ++ + G L+GP SGK+T+L + L + ++V G Y+
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH------ 66
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+P R + + H+ +M +G ++ + + P
Sbjct: 67 -MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTEAP-- 112
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVG 340
V + +A E + L ++GL AD D M +SGGQ++RV + +
Sbjct: 113 -VLVLGMARAEAEKRAME--LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P + LF DE+++ LD +++N +R+ + T ++ + + D +
Sbjct: 165 PKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDK 222
Query: 401 GQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G+IV QG P E+ FR PK + +FL +V
Sbjct: 223 GRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 987 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
+E VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 1047 MRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 1084
+ +R V + G VV H D+ A L +MK+G
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD--------SE-TRKMFIDEVMELVELNP 994
E+ I I++ L L E+ +E T +D +
Sbjct: 78 D-TERAGI----AIIHQELA------LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK 126
Query: 995 LRQSL-----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
L L P V L Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 127 LLAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 1050 VRN 1052
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 899 LMGVSGAGKTTLMDVL----AGRKTGGYITGN-ITISGYPKKQETFA--RISGYCEQNDI 951
L+G SGAGK++L+ VL R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011
P +T+ E+L+ A R+ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLI-EAPCRVLGLSKDQALA----RAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 50/209 (23%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KK 935
E + +L +S + G AL+G SG+GK+TL+ +L G G IT+ G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDL 69
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
++ + + Q P+ LF LR
Sbjct: 70 EKALSSLISVLNQ----RPY-------LFDTTLR-------------------------- 92
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 93 --NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VL 145
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+T++ H + E D++ ++ G
Sbjct: 146 KDKTLIWITHH--LTGIEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 58/251 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----- 221
+LK ++ +T L+G GK+TL + L+G L P G V + G +D
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 222 -FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ Q+ A + I + +AFS R GV E+ RR
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRR----------- 116
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+D + + + + I+ +S GQKKRV +V
Sbjct: 117 VDEALTLVDAQH-----------------------FRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLR----QNIHINSGTAVISLLQPAPETYDLFDDII 396
A L +DE + GLD + Q++ +R Q H+ + I L+ Y++ D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 397 LLSDGQIVYQG 407
+L GQI+ G
Sbjct: 208 VLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-- 953
LT L+G SG GKTT++ ++AG +T +G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 954 ------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007
P +T++E++ F ++ +P + R M E + +V+L Q
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM---EALRMVQLEEFAQR-----KPHQ 144
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 4e-06
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 45/224 (20%)
Query: 865 VDMPEEMKVQGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAGKTTLMDVLAGR 917
V++PEE LE+++V GV+G RPG + ++G +G GK+T + +LAG
Sbjct: 70 VNLPEE------LEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGE 123
Query: 918 KTGGYITGNI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA----WLRLSP 972
+ N+ P E R G ++ + F +YE L + ++ L P
Sbjct: 124 -----LKPNLGRYEDPPSWDEVIKRFRG----TELQNYFKKLYEGELRAVHKPQYVDLIP 174
Query: 973 E-VDSETRKM--------FIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVE 1021
+ V + ++ DEV+E + L + R VS LS + +R+ IA
Sbjct: 175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-------VSELSGGELQRVAIAAA 227
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
L+ + + F DEP+S LD R R +R + G+ V+ H
Sbjct: 228 LLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 951
R G + L+G +G GK+T + +LAG+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 952 HSPFVTIYESLLFSA----WLRLSPE-VDSETRKM--------FIDEVMELVELNPLRQS 998
+ F + E + ++ L P+ V + ++ +DE+++ +EL +
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 -----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 1059 TVVCTIHQPSI 1069
V+ H ++
Sbjct: 191 YVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 895 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETFA--RISGYC 946
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--------NPLRQS 998
Q P +TIY+++ ++L+ V S+ E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
L P S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1059 TVVCTIHQPS----IDIFEAFDELFLMKRGGQEIYVGP 1092
T+V H P+ + + AF L+L G+ I VGP
Sbjct: 200 TIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 937 ETF-----ARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVME-- 988
F R G Q +PF+ +IY+++ + P++ K +DE++E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQS 130
Query: 989 LVE---LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
L + N ++ L LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 131 LKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 1046 VMRTVRNTVDTGRTVVCT 1063
+ + N ++ ++ T
Sbjct: 189 IEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 26/182 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQE 937
L+G+S F LTAL+G SG GK+T + L ITG I G Y K +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 938 TFA--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ G Q PF ++Y+++ + L+++ D E ID+ +E L
Sbjct: 80 LVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKE----LIDQRVE----ESL 128
Query: 996 RQSLVGLP-------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
+Q+ + S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 129 KQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 1049 TV 1050
T+
Sbjct: 189 TL 190
|
Length = 251 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 936
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 937 ------ETFARISGYCEQNDIHSPFVTIYESLL----------FSAWLRLSP-----EVD 975
TF + + E +T+ E+LL + L +P E +
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 976 SETRKMFIDEVMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
+ R E + L+E N RQ+ L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 1035 TSGLD 1039
+GL+
Sbjct: 181 AAGLN 185
|
Length = 255 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 48/222 (21%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-- 951
G + L+G SG GKTT++ ++AG + G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 952 --HS----PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005
S P +++ E++ + L++ V E RK + E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1060
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1061 VCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 1092
+ H S EAF D + +M +G QE+Y P
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 937 ETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSETRKMFIDEVM 987
R + F Y SL + LR+ P++ + R + E +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 988 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
E V L+P + P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQ 936
+L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 937 ETFARI-SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
E R +G Q P +T E+++F LR+ E K EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQ----ARELLAKVGL 126
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1056 TGRTVVCTIHQ 1066
G T+V H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 934 KKQE--TFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKM 981
KK + R G Q +PF +IYE++++ LR L V+ R
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 982 FI-DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
+ DEV + + N GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 153 ALWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 1041 RAAAIV 1046
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 40/166 (24%)
Query: 896 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGNITISGYPKKQETFARISGY 945
+TA++G SG GK+T +++++ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 946 CEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP- 1003
++ + PF +IY+++ + P++ K +DE++E +SL G
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGAAI 153
Query: 1004 ----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L ++ + G ++G +G+GK+TL L G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 942 ISGYCEQNDIHSPFV--TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
+ G QN + FV T+ E L F L L P E RK +D + + L R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKR-VDRALAEIGLEKYRHR 132
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG 1084
T+V H +++ D + +M RG
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 7e-06
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 27/225 (12%)
Query: 850 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 909
P EPH +V+ + V+ ++ VS + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 910 LMDVLAGRKTGGYITGNITISGYP-----KKQETFARISGYCEQNDIHS--PFVTIYESL 962
L+ L G G + GN+ I+G P Q A I+ E H P + + +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 963 LFSAWLRLSPEVDSETRKMFIDEVMEL------VELNPLRQSLVGLPGVSGLSTEQRKRL 1016
S + S KM ID EL ++ ++ + LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
+A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 62/282 (21%), Positives = 107/282 (37%), Gaps = 70/282 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ DVS ++ G + +++G SGK+TLL + ++PT SG V +G D+
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKEL 96
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ ++ + + Q + TV E +AF QGV R E+A
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------RAEREERA-------- 141
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+A+ G E + +SGG ++RV +
Sbjct: 142 ----AEALELVGLEGW--------------------EHKYPDELSGGMQQRVG-----LA 172
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
ALA L MDE + LD ++ + L + + ++ + E L D I
Sbjct: 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLR-LQAELQKTIVFITHDLDEALRLGDRI 231
Query: 396 ILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
++ DG++V G P E++ P V +F + V
Sbjct: 232 AIMKDGRLVQVGTPEEILTN---------PANDYVREFFRGV 264
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 45/217 (20%), Positives = 71/217 (32%), Gaps = 52/217 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ +S + G + GP SGKTTLL LAG P +G V NG +D
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRD 69
Query: 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R Y+ ++V E L F + ++ LAR
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR-------------- 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+GL D + +S GQ++RV +++
Sbjct: 113 -----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE +T LD + + + H G V+
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-06
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISG---YPKKQE--T 938
VS F +TA++G SG GK+T+ ++ + +TG I + Y + + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQ 997
R G Q P ++IY++++ A +L+ V+ ++ ++ V L + ++
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 942 ISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
+ + +H + E +LFS +R + +E+M + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 1001 GLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
P G G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 1052 NTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1097
+ RTV+ H+ S E D++ ++K+G V +G H
Sbjct: 658 ESRSRASRTVLLIAHRLS--TVERADQILVLKKGS----VVEMGTHK 698
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 9e-06
Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 48/258 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK ++ I G + ++GP SGK+TL +AG P K+ G + + G + + P+
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDILFKGESILDLEPE 79
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA--RREKAAGIKPDPDIDV 283
A H+G LAF + G LA + K G P+ D
Sbjct: 80 ERA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQG-LPELDPLE 125
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM-MVGPA 342
+++ I + LK++G+D + + + G SGG+KKR +M ++
Sbjct: 126 FLEIINEK-----------LKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDII 396
LA+ +DE +GLD I + N + S ++I LL Y D +
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGI--NKLMTSENSIILITHYQRLLD-----YIKPDYVH 223
Query: 397 LLSDGQIVYQGPRELVLE 414
++ +G+I+ G EL E
Sbjct: 224 VMQNGKIIKTGDAELAKE 241
|
Length = 252 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 9e-06
Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 68/259 (26%)
Query: 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA-- 228
+S ++ G + L+GP +GK+TLL +AG L SG++ + G ++ + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG----LLPGSGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
AY+SQ M V ++ LT ++
Sbjct: 71 RAYLSQQQTPPFAMPV----------------FQYLT------------------LHQPD 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI---SGG--QKKRVTTGEMMVGPA 342
A+ + +V + D++ R + SGG Q+ R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+ L +DE LD + ++++ L Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-----QGIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSDGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 54/247 (21%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LK + +K G + +++GP SGK+TLL + +P SGT+ +G + +
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKK 69
Query: 225 Q-----RTAAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + Q N +TV E TLA ++ KA
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENITLA--------------PIKVKGMSKA----- 110
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE- 336
EA L+ +GL A D +SGGQ++RV
Sbjct: 111 ----------------EAEERALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARA 149
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+ + P + LF DE ++ LD ++++ ++ G ++ + ++ D +I
Sbjct: 150 LAMNPKVMLF-DEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVI 206
Query: 397 LLSDGQI 403
+ DG+I
Sbjct: 207 FMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 58/256 (22%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----V 223
LKDVS + G ++G SGK+TL L G L P +GT+T G + E V
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDV 79
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
++ DN TV++ +AF GV R EM+ R A ++ V
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMV----ERVDQA-LR-----QV 128
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
M+ E R +SGGQK+RV ++
Sbjct: 129 GMEDFLNR---------------------------EPHR-LSGGQKQRVAIAGVLALQPD 160
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIILL 398
+ +DE ++ LD +++ +RQ + G V+S+ T+DL D +I++
Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQ-LKEQKGITVLSI------THDLDEAAQADRVIVM 213
Query: 399 SDGQIVYQGPRELVLE 414
+ G+I+ +G E + +
Sbjct: 214 NKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 66/266 (24%), Positives = 104/266 (39%), Gaps = 82/266 (30%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
+ +LK +S IK G LLG GK+TLL L DP G + NG + ++
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY 407
Query: 223 -----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
V QR H+ T+R+ L LA
Sbjct: 408 SEAALRQAISVVSQRV---------HLFSATLRDNLL-----------------LA---- 437
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-----GLDVCADTMVGDEMIRGISG 326
P+ A++ V+ L+ L GL + +G E R +SG
Sbjct: 438 ----APN----------ASDEALIEVLQQVGLEKLLEDDKGL----NAWLG-EGGRQLSG 478
Query: 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386
G+++R+ ++ A L +DE + GLD+ T QI+ L + H + T ++
Sbjct: 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMI------ 530
Query: 387 ETYDL-----FDDIILLSDGQIVYQG 407
T+ L FD I ++ +GQI+ QG
Sbjct: 531 -THRLTGLEQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 60/277 (21%), Positives = 109/277 (39%), Gaps = 60/277 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ D S ++ G + +++G SGK+TL+ L ++PT G + +G D+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ ++ + + Q + TV E +AF QGV + R E+A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------KAEREERA-------- 145
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
++A+ G E Y D+ +SGG ++RV +
Sbjct: 146 ----LEALELVGLE-----GY---------------ADKYPNELSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD ++ + L + + ++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 17/213 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK----QETF 939
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-S 998
Q P +++ E++ L E+ +M + M L N LR+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNA-MYLRAKNLLRELQ 129
Query: 999 LVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
L V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 130 LDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-- 187
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088
V C ++ +A + + R GQ +
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 27/215 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQ-- 936
V +N VS R G + +MG+SG+GK+TL+ + T G + I+ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
E + Q+ P T+ E++ F ++ P + E R E +ELV L
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAA---EALELVGLEGWE 154
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRN 1052
LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 155 HKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
+T+V H D+ EA D + +MK G
Sbjct: 210 ---LQKTIVFITH----DLDEALRLGDRIAIMKDG 237
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 26/206 (12%)
Query: 871 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930
M++ V L +S R G + L+G +GAGK+TL+ +AG G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 931 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
G P + AR Y Q + +++ L L + +E ++EV
Sbjct: 56 GQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVA 111
Query: 988 ELVELNPLRQSLVGLPGVSGLS-TE-QRKRLTIAVELVANPSI------IFMDEPTSGLD 1039
E + L +G V+ LS E QR RL AV L P I + +DEP + LD
Sbjct: 112 EALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLD 165
Query: 1040 ARAAAIVMRTVRNTVDTGRTVVCTIH 1065
A + R + G VV + H
Sbjct: 166 VAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 59/165 (35%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
++GVS + + G L+G SG GK+TL ++ G T G I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEG---------- 74
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------ 995
DI ++ E R+ + E++E V L
Sbjct: 75 -------KDIT--------------------KLSKEERRERVLELLEKVGLPEEFLYRYP 107
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
+ LS QR+R+ IA L NP +I DEP S LD
Sbjct: 108 HE----------LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 935
+ L VS G A++G +G+GK+T+ +L G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 936 QETFARIS---GYCEQN-DIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
+E I G QN D + F+ T+ + + F + V + K ID++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKK 129
Query: 990 VELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV- 1046
V + ++ LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 130 VGMEDYLDKEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
Query: 1047 --MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGQEIYVG 1091
M +R T +T++ H D+ EA D++ + G+ I G
Sbjct: 183 KIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 953
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 954 PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP------- 1003
P++ +I E+LL A + DE+ E+ ++ + +P
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 1004 --GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 62/250 (24%), Positives = 93/250 (37%), Gaps = 65/250 (26%)
Query: 177 PGR-LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMD--EFVP--QRTA 228
P R +T L GP SGKT+L+ +AG P G + NG D + F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
Y+ Q TVR L + M
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------------------------------MWKS 104
Query: 289 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALALFM 347
D + +LG++ D G +SGG+K+RV G ++ P L L M
Sbjct: 105 MRAQ------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
DE LD +I + LR I+I ++ + E L D +++L +G++
Sbjct: 153 DEPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVK 208
Query: 405 YQGPRELVLE 414
GP E V
Sbjct: 209 ASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 47/223 (21%)
Query: 156 RIIPSKKRHL-----TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKV 208
+II S HL LK + +T L+GP GK+T L L L P + +
Sbjct: 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63
Query: 209 SGTVTYNGHD-----MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
+G V+ G + D ++ + Q N ++ E + + R GV
Sbjct: 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGV------- 115
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
D V +A+ T ++A + + + E
Sbjct: 116 ---------------KDKAVLDEAVETSLKQAAIWDEVKDHL------------HESALS 148
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
+SGGQ++RV ++ + +DE ++ LD ++ QI N L
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 57/247 (23%), Positives = 97/247 (39%), Gaps = 41/247 (16%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHD---MDE 221
+L V+ I +T L+GP SGK+TLL +L P +VSG V +G D MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R + Q N I +++ E +A + L L + +K ++
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLK----------LNRLVKSKK--------EL 119
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
++ + Q + + D LD A + SGGQ++R+ +
Sbjct: 120 QERVRWALEKAQLWDEVKDR------LDAPAGKL---------SGGQQQRLCIARALAFQ 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L DE + LD T +I + + + ++ + + + D + L G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 402 QIVYQGP 408
QIV GP
Sbjct: 222 QIVEWGP 228
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 44/203 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNG-----HDMD 220
L D++ I ++T L+GP GK+T L L L +K+ G V +G D+D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N M++ + +A+ R G+ + E+
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL------------------ 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ I ++ LK L D D + + +SGGQ++R+ +
Sbjct: 121 ---------------DKIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIA 163
Query: 340 GPALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD +T +I
Sbjct: 164 VKPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 58/266 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVP 224
T++ +++ IK G + LLGP GKTT+L +AG PT G + +G D+ +
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ 76
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
QR + Q M++ E + + + GV E +R K A
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA----------- 120
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L+++ L D V D+ ISGGQ++RV ++ P +
Sbjct: 121 ------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKV 157
Query: 344 ALFMDEISTGLDSS---TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
LF DE + LD++ + + + L+Q +I S + + E + + D +I+++
Sbjct: 158 LLF-DEPLSNLDANLRRSMREKIRELQQQFNITS----LYVTHDQSEAFAVSDTVIVMNK 212
Query: 401 GQIVYQG-PRELVL----EFFAS-MG 420
G+I+ G P+EL F AS MG
Sbjct: 213 GKIMQIGSPQELYRQPASRFMASFMG 238
|
Length = 351 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 21/213 (9%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 941
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
+ Q + P T+ E+L + P + + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERLDE 508
Query: 1002 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093
+ H+P++ F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 894 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKK---QETFA 940
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 941 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
RI +Q + PF +IYE++ F A R++ + ++ ELVE LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA--RING---------YTGDMDELVE-RSLRKAA 139
Query: 1000 V--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
V G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 951
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 952 HSPFV---TIYESLLFSAWLRLSPEVDSETRKMFID--EVMELVELNPL-RQSLVGLPGV 1005
P++ T+ E++ F SP + + K D + ++L P Q+ +G G+
Sbjct: 86 QKPWLLNATVEENITFG-----SP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 1063
+ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 1064 IHQ 1066
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 826 QSSSQSLSLAEAEASR-----PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 880
++ S S A+R P++K + +PH + + +Y + KV + K
Sbjct: 6 EAKETSKSAPAETATRDIYLPPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSK 65
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNITISGY 932
V TA++G SG GK+T + + + TG + I G
Sbjct: 66 YV--------------TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111
Query: 933 PKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-------RLSPEVDSETRKMFI- 983
+ + G Q +PF +I++++ + L +L V+ RK +
Sbjct: 112 FTDEVLLRKKIGMVFQKP--NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALW 169
Query: 984 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
DEV + ++ N L GLS Q++RL +A L P I+ +DEPTS LD +A
Sbjct: 170 DEVSDRLDKNAL-----------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKAT 218
Query: 1044 A 1044
A
Sbjct: 219 A 219
|
Length = 286 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 901 GVSGAGKTTLMDVLAGRK---TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
G SG GK+TL+ ++AG + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKR 1015
+ E++ F L+L+ E +++V E+++L L R+ LS QR+R
Sbjct: 92 VAENMSFG--LKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQR 141
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 2e-05
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L+G+S P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 943 SGYCEQNDIHSPFVTIYES-LLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLV 1000
D+ I +S +LFS +R + + SE + E +E + + + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 1001 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 47/182 (25%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH 234
+ G L+ G +GKTTLL LAG L SG + +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI-ATEGQ 293
H+ G+K D + + G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 294 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353
A + L ++GL DT+V R +S GQKKR+ + + PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 354 LD 355
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 50/267 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVP-- 224
L +V+ I+ G L+G SGK+TL+ L G L PT SG + +G D+ D+ V
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 225 --QRTAAYISQHDNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ + Q+ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+ ++GLD + D+ +SGGQK+RV ++
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + GLD +I+N + +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFASMGFRCPK 425
+ QG PRE+ +E S+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 935
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 936 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKMFI-D 984
R G Q +PF +I+E++ + LR L+ V+ R + D
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
EV + L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 138 EVKD-----RLHESALGLSG------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 323 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
G SGG+KKR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEF 415
Q L D I +L DG+IV G +EL LE
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEI 195
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 13/173 (7%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 952
G + G +GAGKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012
++ E+L F L K + +V L +L V LS Q
Sbjct: 94 KADLSTLENLHFLCGLH------GRRAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQ 142
Query: 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 58/187 (31%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
+ G+ F +TAL+G SG+GK+T + L R N TI AR++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSL-NRM-------NDTIDI--------ARVT 79
Query: 944 G--YCEQNDIHSPFVTIYE-----SLLFSAWLRLSP-------------EVDSETRKMFI 983
G DI+ + +YE ++F R +P E K +
Sbjct: 80 GQILYRGIDINRKEINVYEMRKHIGMVFQ---RPNPFAKSIYENITFALERAGVKDKKVL 136
Query: 984 DEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
DE++E L+Q+ + L LS Q++RL IA + P I+ MD
Sbjct: 137 DEIVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMD 188
Query: 1033 EPTSGLD 1039
EP S LD
Sbjct: 189 EPASALD 195
|
Length = 267 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIT 928
KV + LN VS G + ++G SGAGK+TL+ ++L +G I
Sbjct: 9 KVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD 68
Query: 929 ISGYPKKQETFAR--ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 986
++ + T AR I + ++ S T++ ++ L +P+ + + + + E+
Sbjct: 69 LTTLSNSELTKARRQIGMIFQHFNLLSS-RTVFGNVALPLELDNTPKDEIKRK---VTEL 124
Query: 987 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ LV L S P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 125 LALVGLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 46/236 (19%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYI 231
+ G+ L+GP +GKT+LL AL G L G++ NG ++ E P+ + +++
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLG----FLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATE 291
Q + + T+R+ + PD + +A+
Sbjct: 429 GQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL--- 459
Query: 292 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351
+ A V L GLD T +GD+ G+S GQ +R+ ++ P L +DE +
Sbjct: 460 -ENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPT 513
Query: 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD+ + ++ L + V L+ + +D I ++ DGQIV QG
Sbjct: 514 ASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 4e-05
Identities = 50/253 (19%), Positives = 95/253 (37%), Gaps = 50/253 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ D I G + +++G SGK+T + L ++PT +G + +G ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
V ++ + Q MT+ + + G E R+EKA
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKA-------- 110
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
E LK++GL+ DE+ SGG ++RV +
Sbjct: 111 ------------LEL-------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD + + L++ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQGPRELVL 413
G+IV G + +L
Sbjct: 206 GEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+LK++S +K G LLG SGK+TLL L G L P G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 4e-05
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 38/205 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
+ DVS K G+ ++GP +GKTTL+ L DPT G + +G D+
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
N + ++R+++A + G + R G + D +VY
Sbjct: 400 --------NTVTRESLRKSIATVFQDAG------LFNRSIRENIRLGREGATDEEVY--- 442
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347
E +A D+ LK DT+VG+ R +SGG+++R+ ++ A L +
Sbjct: 443 ---EAAKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVL 495
Query: 348 DEISTGLDSSTTFQI---VNCLRQN 369
DE ++ LD T ++ ++ LR+N
Sbjct: 496 DEATSALDVETEARVKNAIDALRKN 520
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGY--PKKQETFAR 941
V+ + G A++G +G+GK+TL+ L G + T G +T G I+ KK + +
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 942 ISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQS 998
G Q H F T+ + + F E D++ + E++ELV L L +S
Sbjct: 86 KVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELLARS 142
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTG 1057
L G Q +R+ IA L P ++ +DEPT+GLD + +M + + G
Sbjct: 143 PFELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG 196
Query: 1058 RTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
T V H D D++ +M +G
Sbjct: 197 LTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 37/225 (16%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNITIS--- 930
+ K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 931 GYPKKQETFARISGYC------EQNDIHSP-------------------FVTIYESLLFS 965
GY ++ C E+ D + F + +
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 966 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1025
L E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSI 1069
P + DEPT LD + A +V + V +G ++V T H P +
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 137 LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196
+ + ++ + + + LKD+S I G ++G +GK+TLL
Sbjct: 13 FRIYHEKSYSLKKRLKGLAKGGRKVAEF-WALKDISFEIYKGERVGIIGHNGAGKSTLLK 71
Query: 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
+AG PT SG V G + A I E+T RE + G+
Sbjct: 72 LIAGIYKPT---SGKVKVTG---------KVAPLIELGAGFDPELTGRENIYLRGLILGL 119
Query: 257 GTRYEM 262
TR E+
Sbjct: 120 -TRKEI 124
|
Length = 249 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---- 216
K R + LK +S I+ G + +GP +GKTT L L+G L PT SG V G
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPW 86
Query: 217 HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GTRYEMLTEL 266
+F+ +R Q ++ V ++ A + R + L+EL
Sbjct: 87 KRRKKFL-RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
T + G SGKTTL+ +AG P + ++G ++ P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
++VR L RY M +R E
Sbjct: 86 LFPHLSVRGNL-----------RYGM-----KR--------------------ARPSERR 109
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGG+K+RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
++I+ L + +H G ++ + E L D +++L DG++ GP V
Sbjct: 165 PRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 5e-05
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 29/229 (12%)
Query: 848 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 907
VL T EVV V+ + + + VS R G + + GV+G G+
Sbjct: 243 VLRVVKPPSTPGEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQ 297
Query: 908 TTLMDVLAG-RKTGGYITGNITISGYPKKQETFARIS-----GYCEQNDIH---SPFVTI 958
+ L++ ++G RK +G I ++G R Y ++ +++
Sbjct: 298 SELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSL 354
Query: 959 YESLLFSAWLRLSPEVDSETRKMFIDE------VMELVELNPLRQSLVGLPGVSGLSTEQ 1012
E+L+ P R F+D EL+E +R P LS
Sbjct: 355 AENLVLG-RHDKKPFS----RGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGN 408
Query: 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
+++L +A EL P ++ +PT GLD A + + D G+ V+
Sbjct: 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-----YPKKQETFARISGYCEQ 948
G TA++G +G GK+TL+ L+ T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 949 NDIHSPFVTIYESL---------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
N +T+ E + LF+ W + + ++ T+ M + L QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQS- 140
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 33/162 (20%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 941 RISGYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
RI GY Q D P L + +LRL P +K I ++ V+
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQ----AG 111
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+L++VS I+PG ++GP SGK+TL + G L PT SG V +G D+ ++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDP-- 71
Query: 227 TAAYISQHDNHIG 239
++ +H+G
Sbjct: 72 -----NELGDHVG 79
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 6e-05
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 69/241 (28%)
Query: 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 911
EP E V V + G + D VS R G + + G+ GAG+T L
Sbjct: 253 EPPEEGIGEPVLEV---RNLSGGGKVRD-------VSFTVRAGEILGIAGLVGAGRTELA 302
Query: 912 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP---------FVT----- 957
L G + +G I + G + I SP +V
Sbjct: 303 RALFGAR--PASSGEILLDG---------------KPVRIRSPRDAIKAGIAYVPEDRKS 345
Query: 958 --------IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009
I E++ ++ R S R+ ID E + L + S
Sbjct: 346 EGLVLDMSIAENITLASLRRFS-------RRGLIDRRKERALAERYIRRL----RIKTPS 394
Query: 1010 TEQR---------KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
EQ +++ +A L +P ++ +DEPT G+D A A + R +R G+ +
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 1061 V 1061
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYIS 232
++PG LLG +GKTT L G T SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGD---TTVTSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q D +T RE L AR +GV
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV----------------------------------PA 2044
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
+E + ++ ++ LGL + AD + G SGG K++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MDEF 222
L D+S + PG L +++GP +GKTT++ + GK P G+V + G D + E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 62/258 (24%), Positives = 95/258 (36%), Gaps = 66/258 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+DVS I G L GP +GK+TLL + G+ PT G + NGHD + +
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHD----LSRL 69
Query: 227 TAAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
I IG + TV E +A R G R E+ RR
Sbjct: 70 KGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV--- 121
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
L ++GL A + +SGG+++RV
Sbjct: 122 --------------------------LDLVGLKHKARALPSQ-----LSGGEQQRVAIAR 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD-- 394
+V L DE + LD +++I+ + I+ GT V+ A +L +
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLF-EEIN-RLGTTVLM----ATHDLELVNRMR 204
Query: 395 --IILLSDGQIVYQGPRE 410
++ L DG++V R
Sbjct: 205 HRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 49/216 (22%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGG--YITGNITISGYPKKQET 938
L+ VS G A++G +G+GKTT ++ L TG +I + K ++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE------KNKKK 76
Query: 939 FARISGYCEQNDIHSPFV---------------------------TIYESLLFSAWLRLS 971
E+ I TI + ++F +S
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VS 133
Query: 972 PEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1029
V E K + +ELV L + L++S L G Q++R+ +A L P +
Sbjct: 134 MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSG------GQKRRVALAGILAMEPDFL 187
Query: 1030 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
DEPT+GLD + ++ N G+T++ H
Sbjct: 188 VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1066 QPSI 1069
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-05
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNI-------TISGYPK 934
++ VS + G + ++G SGAGKTTL ++AG T G + + T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
+ R G Q P T+ ++L + L L E+ K I M +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1055 -----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
+ +T + H + + D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 7e-05
Identities = 35/227 (15%), Positives = 74/227 (32%), Gaps = 18/227 (7%)
Query: 504 LLKANISRELLLMKRNSFVY-IFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATF 562
L+ + ++L+ + I LI + + L R + D F
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 563 FAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF--------PPWAYAIPSWILKIPVSFL 614
++++ FS S +++R+F + + + V+ L
Sbjct: 95 ILMSVLFSGIFSFSSA-------LFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASL 147
Query: 615 EVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 674
+ + + +++G LLL + + + A+ G+
Sbjct: 148 IAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLL 207
Query: 675 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721
+L L L G E + W + + +PLTYA +A+ W
Sbjct: 208 ILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDAL--RYVYLGGW 252
|
Length = 286 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 8e-05
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L L +++ I G+LT+++G GK++LLLA+ G++ + G V ++ + E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 QRT-------AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ T AY +Q + TV E + F + RY+ +T+ A ++P
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTG 335
D D+ L T +G+ RGI SGGQ++R+
Sbjct: 122 DIDL--------------------------LPFGDQTEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARIS 943
VS G + AL+G SG GK+TL+ +LAG + G + + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
Q+ P +T+ +++ F + D + V E++ L +++ P
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFAKRKP 147
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVC 1062
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 --HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 1063 TIHQPSIDIFEAFD---ELFLMKRGG-------QEIYVGPLGRHSCHLISYFEAIPGVQK 1112
H D EA + +M RG +EIY P R+S I GV K
Sbjct: 206 VTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLK 261
|
Length = 377 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 9e-05
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGG---YITG 925
+ DK +L + ++ + +MG SG+GK+TL+ VL + K G Y
Sbjct: 20 INDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 926 NI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 984
+I I ++E G Q P ++IY+++ + L+ + K ++
Sbjct: 79 DIFQIDAIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVE 131
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
E + V L + P S LS Q++RLTIA L P ++ MDEPTS +D +
Sbjct: 132 ECLRKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 1045 IVMRTVRNTVDTGRTVVCTIHQP 1067
+ + + + +V H P
Sbjct: 191 AIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 9e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
EV ++K+ I + + L ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1033 EPTSGLDARAAAIVMRTVRN 1052
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 1005 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1061 VCTIHQPSIDIFEAFDELFLMKR 1083
+ H P ++ E D+L +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 9e-05
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 897 TALMGVSGAGKTTLMDVLAG--RKTGGYITGN--------ITISGYPKKQETFARISGYC 946
TA+ G SGAGKT+L++ ++G R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006
Q+ P + +L + + F D+++ L+ + PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 72/260 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L VS ++PG + LLG +GK+TL+ L+G P SG + +G + P+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDA 80
Query: 228 AAY----ISQHDNHIGEMTVRETLAFS---ARCQGVGTRYEMLTELARREKAAGIKPDPD 280
A + Q + + ++V E + R G+ R M R +A +
Sbjct: 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM------RRRAREL----- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
L LGLD+ DT+VGD +S Q++ V E
Sbjct: 130 ----------------------LARLGLDIDPDTLVGD-----LSIAQRQMV---EIARA 159
Query: 337 MMVGPALALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAV--IS--LLQPAPETY 389
+ + L +DE + L T F ++ L+ G A+ IS L E +
Sbjct: 160 LSFDARV-LILDEPTAALTVKETERLFDLIRRLKA-----QGVAIIYISHRL----DEVF 209
Query: 390 DLFDDIILLSDGQIVYQGPR 409
++ D I +L DG++V P
Sbjct: 210 EIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
IL DVS I+PG ++GP SGK+TLL L G P SG+V Y+G D+
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQDLA 518
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 58/261 (22%), Positives = 91/261 (34%), Gaps = 66/261 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG SG++ + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGSGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A AY+SQ M V L +PD
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH-------------------------QPD---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE--MMVG 340
K + L LD D + +SGG+ +RV + +
Sbjct: 100 ---KTRTEL-------LNDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 341 PAL-----ALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
P L +DE LD S ++++ L Q G A++ T
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-----QGLAIVMSSHDLNHTLRHA 199
Query: 393 DDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 200 HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 65/260 (25%), Positives = 102/260 (39%), Gaps = 68/260 (26%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FV 223
LK +S I G T LLGP +GK+TLLL L G P G V G +++ +V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWV 77
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ D+ + TV + +AF G+ E+ RR + A +K V
Sbjct: 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA-LKA-----V 126
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPA 342
M + Y+L S GQKKRV G + + P
Sbjct: 127 RMWDFRDK-------PPYHL---------------------SYGQKKRVAIAGVLAMDPD 158
Query: 343 LALFMDEISTGLDSS---TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FD 393
+ + +DE LD T +I++ L G VI T+D+ D
Sbjct: 159 V-IVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIV------ATHDVDLAAEWAD 206
Query: 394 DIILLSDGQIVYQGPRELVL 413
+I+L +G+++ +G + L+
Sbjct: 207 QVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--------- 931
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 932 ----YPKKQETFARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFI 983
P ++ ++ G Q+ P T+ +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 984 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1044 AIVMRTVRN-TVDTGRTVVCTIHQ 1066
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETF 939
+L G++ + G + A+MG +G+GK+TL V+AG + G+I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 940 ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLS----------PEVDSETRKMFIDEVME 988
A + + Q I P V+ + +LRL+ PE+D I+E ++
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
LV ++P S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 136 LVGMDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 1049 TVRNTVDTGRTVVCTIH 1065
+ + + +++ H
Sbjct: 193 GINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KKR++ + VS IK G L+G GK+TL + G +PT SG + + G D+
Sbjct: 22 KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDIT 78
Query: 221 EF 222
+
Sbjct: 79 KL 80
|
Length = 268 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 63/246 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFV 223
L D++ I G L ++G GKT+L+ A+ G+L ++ + G+V Y V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------V 684
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP-DPDID 282
PQ + I TVRE + F G+ +E R +A + D+D
Sbjct: 685 PQVS---------WIFNATVRENILF-------GSDFES----ERYWRAIDVTALQHDLD 724
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ TE E V ISGGQK+RV+ + +
Sbjct: 725 LLPGRDLTEIGERGV-------------------------NISGGQKQRVSMARAVYSNS 759
Query: 343 LALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
D+ + LD+ Q+ + C++ + + V + L P L D IIL+S+G
Sbjct: 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEG 815
Query: 402 QIVYQG 407
I +G
Sbjct: 816 MIKEEG 821
|
Length = 1495 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTA 228
DVS I G + LLG GK+TLL LAG PT +G + +G D+ P QR
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPI 93
Query: 229 AYISQHDNHIGEMTVRETLAF 249
+ Q MTV + +AF
Sbjct: 94 NMMFQSYALFPHMTVEQNIAF 114
|
Length = 377 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 25/156 (16%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCEQN 949
G A++G SGAGK+TL++++AG T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 950 DIHSPFVTIYE--SLLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
++ +T+ + L + L+L+ + + R+M I++++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 867 MPEEMKVQGV--LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG- 916
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 917 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVD 975
R G + N I + G Q +PF +I++++ F P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 976 SETRKMFIDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVA 1024
T + +DEV+E LRQ+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 1025 NPSIIFMDEPTSGLD 1039
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPL 995
++ E + S +T+ E+L + + + + I V EL L+
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHER 130
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
R G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 131 RIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1056 TGRTVVCTI 1064
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 36/209 (17%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 939
+L +L VS G AL G SGAGK+TL+ L Y+ + I + + +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSL----YANYLPDSGRI--LVRHEGAW 73
Query: 940 ARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVME-LVE------ 991
++ + + TI Y S +LR+ P V + ++ V E L+E
Sbjct: 74 VDLAQASPREVLEVRRKTIGY----VSQFLRVIPRVSA------LEVVAEPLLERGVPRE 123
Query: 992 ---------LNPLR--QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
L L + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 124 AARARARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
Query: 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
+V+ + G ++ H +
Sbjct: 183 ANRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQETFA 940
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 941 RIS-GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETR-KMFIDEV--MELVELNP 994
R G Q+ H + T+Y+++ + + D R +D+V ++ + P
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
++ LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 136 IQ-----------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 1055 DTGRTVVCTIH 1065
G TV+ H
Sbjct: 185 RVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1066
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 1067 PSIDIFEAF--DELFLMKRG 1084
D+ EA D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 49/215 (22%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K IL D++ I+ G++ ++G SGK+TLL + G L+ SG V NG +
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQETP 63
Query: 221 EFVPQR-------TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
++ Y+ Q+ I TV E L +L
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENL-----------------DLGL----- 101
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
Y K E +E L+ +GL++ + + +SGG+++RV
Sbjct: 102 ---------KYKKLSKKEKREKKK---EALEKVGLNLKLKQKIYE-----LSGGEQQRVA 144
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
++ P + DE + LD ++++ L +
Sbjct: 145 LARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K +LK VS I G + ++G SGK+TLL L G +PT SG V +NG +
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSL 69
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L +S G++T L+G SGK+TLL L P+ G + + ++ + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R AY+ Q MTVRE +A +G RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF------------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
G + + ++GL A +V +SGG+++R ++ +
Sbjct: 121 ---------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD + ++ L + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 152 LNYLRII--PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS 209
L+ L +S I G ++G +GK+TLL A+AG L PT S
Sbjct: 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---S 60
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQ-----HDNHIGEMTVRETLAFSARCQG 255
G + +G D+ + + A +++ E+T+ E LA A +G
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLAL-AESRG 110
|
Length = 263 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 55/250 (22%), Positives = 97/250 (38%), Gaps = 59/250 (23%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMD 220
+L+DVS + PG +T L+GP SGK+T++ L P G V +G +
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYE 82
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT-RYEMLTELARREKAAGIKPDP 279
+ + Q ++++ +A+ G+ + +E + E A++ A
Sbjct: 83 HKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAHAHSF---- 132
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVTTGEM 337
+ L DT VG+ +G +SGGQK+RV
Sbjct: 133 -------------------------ISELASGYDTEVGE---KGSQLSGGQKQRVAIARA 164
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFD 393
++ L +DE ++ LD+ + Q V + VI S ++ A D
Sbjct: 165 LIRNPQVLILDEATSALDAESE-QQVQQALYDWPERRTVLVIAHRLSTVERA-------D 216
Query: 394 DIILLSDGQI 403
I++L G+I
Sbjct: 217 QILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQET 938
+LN +S + R G + G SG GK+TL+ ++A +G + IS E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EI 78
Query: 939 FARISGYCEQNDIHSPFV---TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMEL-VELN 993
+ + YC Q +P + T+Y++L+F +R P+ +F+D++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDDLERFALPDT 129
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L ++ ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 130 ILTKN------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 61/257 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFV 223
LK+VS I G +LG SGK+T+ L G L P +K+ G +T + ++ E
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKENLKEI- 81
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ I Q+ DN TV + +AF G + + +K
Sbjct: 82 -RKKIGIIFQNPDNQFIGATVEDDIAF-------GLENKKVP----PKK----------- 118
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGP 341
MK I I D KV D D+ + +SGGQK+RV ++ + P
Sbjct: 119 --MKDI---------IDDLAKKVGMEDYL------DKEPQNLSGGQKQRVAIASVLALNP 161
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-----LFDDII 396
+ +F DE ++ LD +I + + +IS+ T+D L D +I
Sbjct: 162 EIIIF-DESTSMLDPKGKREIKKIMVD-LRKTRKKTLISI------THDMDEAILADKVI 213
Query: 397 LLSDGQIVYQG-PRELV 412
+ S+G+++ QG P+E++
Sbjct: 214 VFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 50/268 (18%)
Query: 149 EDILNYLRI---IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--- 202
ED+ N R+ I K ILKD++ I + ++GP SGK+TLL L +
Sbjct: 8 EDVFNISRLYLYINDK----AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY 63
Query: 203 DPTLKVSGTVTYNGHD---MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259
D +KV G V Y G D +D ++ + Q N +++ + +A+ + G+ +
Sbjct: 64 DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEK 123
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319
E+ + + G+ +VY + + Q
Sbjct: 124 REIKKIVEECLRKVGLWK----EVYDRLNSPASQ-------------------------- 153
Query: 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+SGGQ++R+T + L MDE ++ +D + I + + + + A++
Sbjct: 154 ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE---LKNEIAIV 206
Query: 380 SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + + D + L +G++V G
Sbjct: 207 IVSHNPQQVARVADYVAFLYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015
++IYE++ F +V + IDE +E L + VG G S LS Q++R
Sbjct: 1310 MSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGKS-LSGGQKQR 1366
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1066
+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 59/257 (22%), Positives = 107/257 (41%), Gaps = 66/257 (25%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
HL + D++ ++ G +LGP +GK+TLL +AG L P SG++T NG D
Sbjct: 12 HHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTT 66
Query: 223 VP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
P +R + + Q +N +TV + + G+G G+K +
Sbjct: 67 PPSRRPVSMLFQENNLFSHLTVAQNI-------GLGL-------------NPGLKLNAAQ 106
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+ AIA + +G++ + G +SGGQ++RV +V
Sbjct: 107 REKLHAIARQ--------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVRE 147
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL----------QPAPETYDL 391
L +DE + LD + +++ + Q ++LL + AP +
Sbjct: 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQ----ERQLTLLMVSHSLEDAARIAPRS--- 200
Query: 392 FDDIILLSDGQIVYQGP 408
++++DG+I + GP
Sbjct: 201 ----LVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 28/214 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQE--T 938
L V+ G TA +G +G+GK+T+M +L G G + I+ K ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 939 FARISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRK------MFIDEVMELV 990
+ G Q F T+ + + F +S E ++E + I E L
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE-EAEALAREKLALVGISE--SLF 139
Query: 991 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
E NP LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 140 EKNPFE-----------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF 188
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +G T+V H D+ D ++++++G
Sbjct: 189 KKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-04
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKD+S I PG L+G +GK+TLL +AG+L+P G VT+
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWG--------ST 62
Query: 226 RTAAYISQ 233
Y Q
Sbjct: 63 VKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 48/180 (26%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGNITISGYPKKQETF 939
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 940 ARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVE 991
R I F Y SL + L ++ + + R+ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV- 141
Query: 992 LNPLRQSLVGLPGVSGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 1039
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 ---------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 30/160 (18%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GNITISGYPKKQETFARISGYC 946
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 947 EQNDIHSPF-VTIYESLLFSAWLR-----LSPEVDSETRKMFI-DEVMELVELNPLRQSL 999
Q +PF +IY+++ + A + + V+ R+ + DEV + L+QS
Sbjct: 97 FQKP--NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-----KLKQS- 148
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 149 ----GLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216
+ LKDVS + G L+G +GK+TLL LAG P SGTVT G
Sbjct: 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 939
L VS G L+G +GAGK+TL+ +LAG I +G +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R+S +P +T E++ + L LS + E IDE++E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID- 137
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
LP V S+ + RL A+ P I+ +DE + DA R +R + G+
Sbjct: 138 ---LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG 1084
TV+ H PS I D ++++G
Sbjct: 194 TVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 316 VGDEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
V + + G+SGGQ++RV + + P + L +DE ++ LD T ++ L+ +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 47/231 (20%)
Query: 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDN 236
++T LG +GKTT L L G L PT SGTV G D++ +++ QH+
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNI 1013
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TV E + F A+ +G +EA
Sbjct: 1014 LFHHLTVAEHILFYAQLKG----------------------------------RSWEEAQ 1039
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + L+ GL +E + +SGG +++++ VG A + +DE ++G+D
Sbjct: 1040 LEMEAMLEDTGLH-----HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ I + L + SG +I E L D I ++S G++ G
Sbjct: 1095 YSRRSIWDLL---LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 54/208 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----MD 220
LK ++ I+ ++T L+GP GK+T L L L P++K+ G V +G D +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE-KAAGIKPDP 279
++ + Q N M++ + +A+ R G+ + + L E+ + K A + +
Sbjct: 79 VNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKK-LDEIVEKSLKGAALWDEV 136
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ A+ G+SGGQ++R + +
Sbjct: 137 KDRLKKSAL----------------------------------GLSGGQQQR-----LCI 157
Query: 340 GPALA-----LFMDEISTGLDSSTTFQI 362
ALA L MDE ++ LD +T +I
Sbjct: 158 ARALAVEPEVLLMDEPTSALDPISTLKI 185
|
Length = 250 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 940
L+ V+ G L+G +G+GK+TL+ L G +G I + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 941 RISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
+ G Q + F TI + + F L LS + E + + M +V L
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS---EEEI-ENRVKRAMNIVGL-----D 133
Query: 999 LVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
S LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 134 YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 62/278 (22%), Positives = 106/278 (38%), Gaps = 57/278 (20%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
+ + L +VS + G++ ++G +GK+TL+ + PT SG+V +G D+
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTL 72
Query: 223 V-PQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ T A I QH N + TV +A EL K
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP-------------LELDNTPK----- 114
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
E L ++GL D +SGGQK+RV
Sbjct: 115 ----------------DEIKRKVTELLALVGL-----GDKHDSYPSNLSGGQKQRVAIAR 153
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+ L DE ++ LD +TT I+ L++ I+ G ++ + + D +
Sbjct: 154 ALASNPKVLLCDEATSALDPATTQSILELLKE-INRRLGLTILLITHEMDVVKRICDCVA 212
Query: 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
++S+G+++ QG V E F+ PK F++
Sbjct: 213 VISNGELIEQGT---VSEIFSH-----PKTPLAQKFIR 242
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+L DVS +KPG++ LLGP +GK+TL+ + G + P G + NG +VPQ+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGKLRIGYVPQK 75
|
Length = 251 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
LR+ L+ P LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 1055 DTGRTVVCTIHQPSIDIF 1072
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 37/204 (18%), Positives = 58/204 (28%), Gaps = 69/204 (33%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 952
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012
E + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 1013 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1064
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1065 HQPSI----DIFEAFDELFLMKRG 1084
+ + FD ++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFA----RISGYCEQND 950
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 951 IHSPFV-TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVEL-----NPLRQSLVGLP 1003
+ FV +IYE++ ++ L + D E + + + ++ V L + L+Q+ + L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALALS 144
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
G Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 145 G------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 941
+L G+ G + AL+G +GAGK+TLM ++AG +G + I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 942 ISGY----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLR 996
Q + P +++ E++LF L S +KM + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDLDS 136
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 38/165 (23%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--------GNITISGYPKKQETFA 940
+TAL+G SG GK+T + D++ G + G+I + + KK
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK----- 85
Query: 941 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-----NP 994
G Q +PF +I++++ + LR+ E D + + ++E ++ L +
Sbjct: 86 --VGMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDK 139
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L +S +GL G Q++RL IA + +P +I MDEP S LD
Sbjct: 140 LDKSALGLSG------GQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 60/194 (30%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LKD+S I G ++GP +GK+TLL LAG+L P SGTV
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVG--------E 383
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
Y QH + + T E L+E PD D
Sbjct: 384 TVKIGYFDQHRDELDPDK---------------TVLEELSEGF-----------PDGD-- 415
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM---IRGISGGQKKRVTTGEMMVGP 341
E V YL G G++ + +SGG+K R+ ++++ P
Sbjct: 416 ---------EQEVRA--YLGRFGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQP 457
Query: 342 ALALFMDEISTGLD 355
L +DE + LD
Sbjct: 458 PNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
+L +++ IKPG ++GP SGK+TL L P G V +G D+ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPAW 528
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q +N + ++R+ +A +P
Sbjct: 529 LRRQMGVVLQ-ENVLFSRSIRDNIALC---------------------------NPGAPF 560
Query: 284 -YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ A + I L +T VG E +SGGQ++R+ +VG
Sbjct: 561 EHVIHAAKLAGAHDFI-------SELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNP 612
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L DE ++ LD + I+ +R+ I G VI + T D II+L GQ
Sbjct: 613 RILIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQ 668
Query: 403 IVYQGPRELVL 413
I G E +L
Sbjct: 669 IAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 51/207 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFVPQ 225
+KDVS +T ++GP GK+T+L ++ D P+ +V+G + + D+
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI------ 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP--DIDV 283
+D + +++R RR KP+P + +
Sbjct: 74 --------YDRGVDPVSIR-----------------------RRVGMVFQKPNPFPAMSI 102
Query: 284 YMKAIA-------TEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTG 335
Y IA EA+ I + LK + L D D + + M +SGGQ++R+
Sbjct: 103 YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIA 160
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQI 362
+ + MDE ++ LD +T +I
Sbjct: 161 RTIAVKPEVILMDEPASALDPISTLKI 187
|
Length = 252 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 44/202 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
+K+V I G++T L+GP GK+T+L +L L + G V ++G D+ D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +AF AR G + L E + R+ A
Sbjct: 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAV------- 140
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
D C D + +E +SGGQ++R+ +
Sbjct: 141 ---------------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAI 171
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ MDE + LD +T +I
Sbjct: 172 EPEVILMDEPCSALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT 205
PG + L++GPP SGKTTL ALA +L P
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 54/260 (20%), Positives = 98/260 (37%), Gaps = 57/260 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KR ++ VS +K G + LLGP +GKTT + G + P SG + +G D+
Sbjct: 11 GKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDIT 65
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ + A Y+ Q + ++TV E + +G+ + R EK
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE-------REEKL---- 114
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
+ L+ + + +SGG+++RV
Sbjct: 115 -----------------------EELLEEFHITHLRKSKAS-----SLSGGERRRVEIAR 146
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGTAVISLLQPAPETYDLFD 393
+ P L +DE G+D I ++ I I + G V+ ET + D
Sbjct: 147 ALATNPKF-LLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITD 201
Query: 394 DIILLSDGQIVYQG-PRELV 412
++ +G+++ +G P E+
Sbjct: 202 RAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 946
+S R G A++G +G+GK+TL +LAG +G + I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 947 EQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
Q I F SL + LRL+ +++ E R+ I E + V L P S
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 145 Y--YPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
GLS Q++RL IA L +P +I MDEP S LD A +
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 19/190 (10%)
Query: 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITI---SGYPKKQET 938
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 939 FARISGYCEQNDIHSPF-----VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL- 992
A I+ N F + I SL + + + EL+ L
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 993 -NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ + Q++ L G Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1052 NTVDTGRTVV 1061
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 941
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 942 ISGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
+ QN +H TI ++ ++ + S E E +M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 999 L---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
L +G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 470 LDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQ 527
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
RT + H+ S E DE+ +++ G
Sbjct: 528 KNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L++V+ +KPG++ + GP SGK+TLL + D + G + +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRF----------- 374
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
HD + ++ + + +R V + ++ A G +PD
Sbjct: 375 --------HDIPLTKLQLDS---WRSRLAVVSQTPFLFSDTVANNIALG-RPD------- 415
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVGPAL 343
A E + + + +L L DT VG+ RG+ SGGQK+R++ ++ A
Sbjct: 416 -ATQQEIEHVARLASVHDDILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAE 471
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDIIL 397
L +D+ + +D T QI++ LRQ G VI S L A +I++
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQ---WGEGRTVIISAHRLSALTEA-------SEILV 521
Query: 398 LSDGQIVYQGPRELVLE 414
+ G I +G + + +
Sbjct: 522 MQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 43/208 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S + PG L +L+GP +GKTTL+ + GK P G V ++G D
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD-TD------- 69
Query: 228 AAYISQHDNH-IGEMTVRETLAFSARCQGVG------TRYEMLTELARREKAAGIKPDPD 280
+++ H I G+G T +E LT E A D
Sbjct: 70 ---LTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNR--DKS 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ + A + + D L +GL D + +S GQK+ + G ++
Sbjct: 112 VFASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQ 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQ 368
L +DE G+ + T + L+
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
T + ++S + + LLGP +GK+TLL + G L PT SG + ++GH
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW 64
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 61/260 (23%), Positives = 105/260 (40%), Gaps = 73/260 (28%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++++ S ++PG+ L+G SGK+T+ +AG P SG + ++G +E +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLT---------ELARREKAAGIKP 277
A ++ M ++ F GT + LT +L R K A I
Sbjct: 551 LANSVA--------MVDQDIFLFE------GTVRDNLTLWDPTIPDADLVRACKDAAIH- 595
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DV G +A + E +SGGQ++R+
Sbjct: 596 ----DVITSR--PGGYDAELA--------------------EGGANLSGGQRQRLEIARA 629
Query: 338 MVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVI-----SLLQPAPETYD 390
+V P++ L +DE ++ LD T I + LR+ G T +I S ++
Sbjct: 630 LVRNPSI-LILDEATSALDPETEKIIDDNLRRR-----GCTCIIVAHRLSTIRDC----- 678
Query: 391 LFDDIILLSDGQIVYQGPRE 410
D+II+L G++V +G E
Sbjct: 679 --DEIIVLERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 41/241 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LK ++ + PG + L+GP SGK+T+ L PT G V +G
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVP-------- 544
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q+D+H V VG + + R A G+ PD ++
Sbjct: 545 ----LVQYDHHYLHRQVA----------LVGQEPVLFSGSVRENIAYGLTDTPDEEI--M 588
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
A A + I DT VG E +SGGQK+R+ +V L
Sbjct: 589 AAAKAANAHDFIM-------EFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKPRVLI 640
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE ++ LD+ L Q + V+ + T + D I++L G +V
Sbjct: 641 LDEATSALDAE-----CEQLLQESRSRASRTVLLIAHRLS-TVERADQILVLKKGSVVEM 694
Query: 407 G 407
G
Sbjct: 695 G 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 48/284 (16%)
Query: 157 IIPSKKRHLT-----ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVS 209
II +K HL+ L +S + LT L+GP GK+T L L D +K++
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
G + + G ++ Y S+ D + E+ + F Q + + +A
Sbjct: 64 GEIKFEGQNI----------YGSKMD--LVELRKEVGMVFQ---QPTPFPFSVYDNVAYG 108
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
K AG+K D ++ + + ++A + + D + D + SGGQ+
Sbjct: 109 LKIAGVK---DKELIDQRVEESLKQAAIWKE----------TKDNL--DRNAQAFSGGQQ 153
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
+R+ + + +DE ++ LD ++ +I L + H + V LQ A
Sbjct: 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR-- 211
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
+ D L +G ++ GP E + F PK++ +D+L
Sbjct: 212 -ISDQTAFLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 16/209 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 940
LN S F+ +T ++G +G+GK+T++ + G +TG I G+ I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 941 RIS---GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R+ G Q + F TI + + F P E ++ +V EL++L L
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFG------PVNLGENKQEAYKKVPELLKLVQLP 140
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVD 1055
+ V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 141 EDYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ ++ H + DE+ +M G
Sbjct: 200 YKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 34/169 (20%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----TGNITISGYPKKQETFARIS 943
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 944 GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-- 1000
++ + PF +I+E++ + +R R+ ++E +E N LR + +
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALWD 149
Query: 1001 ----GLPGVS-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
L ++ LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 60/255 (23%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FV 223
L DV+ +K G ++LG SGK+T+ + L P+ G V +G D + +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWD 82
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A + Q+ DN I V E +AF E L GI P+
Sbjct: 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGP---------ENL----------GIPPE---- 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG----ISGGQKKRVT-TGEM 337
E D LK +G+ E R +SGGQK+RV G +
Sbjct: 120 -----------EIRERVDESLKKVGMY---------EYRRHAPHLLSGGQKQRVAIAGIL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+ P +F DE + LD S ++VN +++ ++ G +I + E + D II+
Sbjct: 160 AMRPECIIF-DEPTAMLDPSGRREVVNTIKE-LNKKYGITIILITHYMEEAVEA-DRIIV 216
Query: 398 LSDGQIVYQG-PREL 411
+ G++V +G P+E+
Sbjct: 217 MDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 25/178 (14%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----E 937
+L +S F G + ++G SGAGK+TL+ ++ + G+I I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTIDVID 74
Query: 938 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
+I +Q P + T+ +++ + L+ VD E + +V LN
Sbjct: 75 LRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVDVEY-------YLSIVGLN- 121
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
V LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 122 ---KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 28/116 (24%)
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSS 357
L++LGL AD + +SGG+++RV ++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 407
+++ LR+ + G V+ +L +DL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRR-LARERGKTVVMVL------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 51/258 (19%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KKR ++ DVS + G + LLGP +GKTT + G + P SG + + D+
Sbjct: 15 KKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDIT 69
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ + A Y+ Q + ++TV + + R + L + R+E+ +
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE-----IREKDLKKAERKEELDAL- 123
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
L+ + D+ +SGG+++RV
Sbjct: 124 --------------------------LEEFHITHLRDSKAY-----SLSGGERRRVEIAR 152
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
+ P L DE G+D I ++ G V+ ET D+ D
Sbjct: 153 ALAANPKFILL-DEPFAGVDPIAVIDIQRIIKHLKDRGIG--VLITDHNVRETLDICDRA 209
Query: 396 ILLSDGQIVYQG-PRELV 412
++SDG+++ +G P E+V
Sbjct: 210 YIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPALAL 345
A+ + EA + +YL +GLD D+ + + G+SGGQK+RV G + + P + +
Sbjct: 144 ALGVKKSEAKKLAKFYLNKMGLD---DSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILI 199
Query: 346 FMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
F DE + GLD Q++ + N V + ++ D++I++ G+
Sbjct: 200 F-DEPTAGLDPKGEHEMMQLILDAKAN-----NKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 403 IVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFV--T 457
I+ G P E+ S + P+ V + ++ + +K Y+ T
Sbjct: 254 ILKTGTPYEIFTDQHIINSTSIQVPR---VIQVINDLIKKD------PKYKKLYQKQPRT 304
Query: 458 VQEFAEAFQSFHVG 471
+++ A+A F G
Sbjct: 305 IEQLADAINEFIKG 318
|
Length = 320 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY 214
+DVS + PG + ++G SGKTTLL ++G+L P +GTVTY
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTY 65
|
Length = 258 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 53/245 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S + G++ L+G +GK+TLL L+G P +G++ +G +M F
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEM-RFASTTA 75
Query: 228 A-----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A A I Q + + EMTV E L L +L + GI
Sbjct: 76 ALAAGVAIIYQELHLVPEMTVAENL--------------YLGQLPHK---GGI------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
V + + E +E L+ LG+D+ DT + +S GQ++ V + + A
Sbjct: 112 VNRRLLNYEARE-------QLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNA 159
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ DE ++ L + F+++ LR G ++ + E + L D I +
Sbjct: 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAE-----GRVILYVSHRMEEIFALCDAITVFK 214
Query: 400 DGQIV 404
DG+ V
Sbjct: 215 DGRYV 219
|
Length = 501 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
+L +VS I G + ++G SGK+TLL L G PT SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSK 75
|
Length = 233 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----MD 220
L D+S + ++T L+GP GK+T L L L P +V G + +G + +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +A+ R GV + + + R + A +
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL----- 135
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
D D + E G+SGGQ++R+ +
Sbjct: 136 ---------------------------WDEVKDRL--HESALGLSGGQQQRLCIARALAV 166
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD T +I
Sbjct: 167 EPEVLLMDEPASALDPIATQKI 188
|
Length = 253 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 946
VS + G A++G +GAGKTTL+++L ++ G I I G T
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVT-------- 403
Query: 947 EQNDIHSPFVTIYESL-LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------- 997
+ + T+++ LF+ +R + + E +EV E +
Sbjct: 404 -RESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNG 460
Query: 998 --SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+LVG G + LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 461 YDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAID 515
Query: 1056 T---GRTVVCTIHQPS 1068
RT H+ S
Sbjct: 516 ALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 65/251 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR- 226
L +VS I G + L+G +GKTTLL L G T SG + ++G D+ ++ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKI 77
Query: 227 ---TAAYISQHDNHIGEMTVRETLA---FSARCQGVGTRYEMLTEL-----ARREKAAGI 275
A + + MTV E LA F A R + + EL RR + AG
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG- 136
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
TM SGG+++ + G
Sbjct: 137 --------------------------------------TM---------SGGEQQMLAIG 149
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
++ L +DE S GL QI + + Q G + + Q A + L D
Sbjct: 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ--LREQGMTIFLVEQNANQALKLADRG 207
Query: 396 ILLSDGQIVYQ 406
+L +G +V +
Sbjct: 208 YVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLL--LALAGKLDPTLKVSGTVTYNGHDM-----D 220
LK+++ I +T ++GP GK+T + L L ++ P +K++G + YNG ++ D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N + ++ + +A+ R G + + L E+ EK+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKK-LQEIV--EKS-------- 135
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+K +A D D + + +SGGQ++R+ +
Sbjct: 136 ----LKDVAL-----------------WDEVKDRLHTQAL--SLSGGQQQRLCIARALAT 172
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 29/166 (17%)
Query: 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITISGYPKKQETFARISGY 945
G+ + ++G +G GKTT + +LAG G T+S P+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY---------- 69
Query: 946 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005
I + + LL S D T F E+ + +++ + V
Sbjct: 70 -----IKADYEGTVRDLLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---------PKKQETFARISGYCEQN 949
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 950 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PLRQSLVGLP 1003
P +T+ ++L+ A R+ + + ++++E + L PL
Sbjct: 91 YNLWPHLTVQQNLI-EAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFPLH------- 141
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V
Sbjct: 142 ----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIV 197
Query: 1064 IHQ 1066
H+
Sbjct: 198 THE 200
|
Length = 242 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FA 940
LNGVS + G +++G +G+GK+T ++ G G + I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 941 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G QN D T+ + + F + P + R +DE + V + +
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNMLDFKTR- 136
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+ LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 137 ----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 1060 VVCTIHQPSIDIFEAFDELFLMKRG 1084
V +I +D + D + +MK G
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 57/211 (27%), Positives = 78/211 (36%), Gaps = 53/211 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDE 221
L+IL V V+K G L+G SGK+TLL LAG D + SG V+ G H MDE
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE------MLTELARREKAAGI 275
R R + VG ++ L L E A +
Sbjct: 80 --EARAK----------------------LRAKHVGFVFQSFMLIPTLNALENVELPALL 115
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
+ + A A L+ LGL D + +SGG+++RV
Sbjct: 116 RGESSRQSRNGAKA------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALA 158
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
G LF DE + LD T +I + L
Sbjct: 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 66/244 (27%), Positives = 100/244 (40%), Gaps = 34/244 (13%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L + +KPG + ++GP SGKTTLL + P +GT+ +D
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITID----- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
TA +SQ I ++ Q VG ++ R I P V +
Sbjct: 69 -TARSLSQQKGLIRQLR-----------QHVGFVFQNFNLFPHRTVLENIIEGP---VIV 113
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGPALA 344
K E EA L +GL R +SGGQ++RV + + P +
Sbjct: 114 KGEPKE--EATARARELLAKVGL-----AGKETSYPRRLSGGQQQRVAIARALAMRPEVI 166
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
LF DE ++ LD +++N +RQ + T VI + D+ D I + G+IV
Sbjct: 167 LF-DEPTSALDPELVGEVLNTIRQ-LAQEKRTMVI-VTHEMSFARDVADRAIFMDQGRIV 223
Query: 405 YQGP 408
QGP
Sbjct: 224 EQGP 227
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 44/214 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM----DE 221
LK ++ I ++T L+GP GK+TLL L L +K++G +T +G D+ D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+ + Q N M++ E +A+ R QG+ + + + R + A + ++
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW--DEV 135
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+K+ A G+SGGQ++R+ +
Sbjct: 136 KDRLKSHAF--------------------------------GLSGGQQQRLCIARTIAME 163
Query: 342 ALALFMDEISTGLDSSTTFQI---VNCLRQNIHI 372
+ MDE ++ LD T +I + L++N I
Sbjct: 164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTI 197
|
Length = 249 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 46/210 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
L D++ I R+T L+GP GK+TLL L P +++G + YNG ++ D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +A+ R G + K
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE------------KNKK-------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMM- 338
+ I + LK L D D + + +SGGQ++R+ +
Sbjct: 121 -------------TLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQRLCIARTLA 165
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
V P + L MDE + LD T +I + +
Sbjct: 166 VNPEVIL-MDEPCSALDPIATAKIEDLIED 194
|
Length = 253 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKD+S IKPG L+ GP +GK++L ALAG L P SG + + F+PQ
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPW--GSGRIGMPEGEDLLFLPQ 71
Query: 226 R 226
R
Sbjct: 72 R 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 32/216 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFAR 941
LNG++ + G L A++G G GK++L+ L K G++ +++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQS 998
I QND ++ E++LF L + + + ++ L +L L ++
Sbjct: 710 I-----QND------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDT 1056
+G GV+ LS Q++R+++A + +N I D+P S +DA + V V
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK 811
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
+T + H I D + +M GG+ +G
Sbjct: 812 NKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 52/207 (25%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936
LE K VLL VS + G LT ++G +G+GK+TL+ L IS +
Sbjct: 670 LEPK-VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL---------LSQFEIS----EG 715
Query: 937 ETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-----VMELV 990
+A S Y Q AW+ ++ V +F DE + + V
Sbjct: 716 RVWAERSIAYVPQQ----------------AWI-MNATVRGNI--LFFDEEDAARLADAV 756
Query: 991 ELNPLRQSLVGLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 1039
++ L L L G GL TE Q+ R+++A + AN + +D+P S LD
Sbjct: 757 RVSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Query: 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
A V+ G+T V HQ
Sbjct: 815 AHVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.002
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGNITISGYPKKQETFARISGYC 946
+TA +G SG GK+T + D++ G G Y G T S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 947 EQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005
++ +PF ++I++++ + R + D + + +++ ++ L + + G
Sbjct: 170 QKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAG- 223
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1066
LS Q++RL IA L P ++ MDEP GLD A+ V +++ + + T+V H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Query: 1067 -PSIDIFEAFDELF 1079
+ F F
Sbjct: 211 LHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-------RKTGGYITGNITISGYPKKQ 936
LN +S + G TAL+G +G+GK+T+ ++ G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 937 ETFARIS---GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
+T I G QN + FV T+ + + F R P E K+ + +V+ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENRAVPR--PEMIKI-VRDVLADVG 132
Query: 992 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 1052 N-TVDTGRTVVCTIHQPSIDIFEA 1074
TV+ H DI EA
Sbjct: 188 KLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 324 ISGGQKKRV-TTGEMMVGPALALF-MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
+SGG+ +RV E+ P LF +DE STGL Q++ ++ I+ G VI L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG--LIDLGNTVI-L 144
Query: 382 LQPAPETYDLFDDIILL------SDGQIVYQG 407
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 325 SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLR--QNIH------INSG 375
SGGQ++R+ ++ P L L +DE ++ LD S Q+++ LR Q H I+
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ L +I++ DG+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213
L DV+ I G ++G SGK+TLL L G L PT SGTVT
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVT 65
|
Length = 290 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 7/253 (2%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LK++S I+ G + +LG +GK+ L+ L G +D SG + Y+ ++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGY 71
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ + + G E + F + R + + A D +D
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
++A+ G E + ++ + + + + R +SGG+K+RV +
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT--HIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY-DLFDDIILLSDGQI 403
DE + LD T + N L + + + + V++ PE DL D I L +G+I
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWLENGEI 247
Query: 404 VYQG-PRELVLEF 415
+G P E+V F
Sbjct: 248 KEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 40/254 (15%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTY 214
R PS + + +LK +S I G + ++G SGK+TL+ L G LD PT SGT
Sbjct: 12 RSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPT---SGTYRV 67
Query: 215 NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
G D+ A +H I + RY +L+ L +
Sbjct: 68 AGQDVATLDADALAQLRREHFGFIFQ------------------RYHLLSHLTAAQNV-- 107
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
++ + + + L+ LGL+ + +SGGQ++RV+
Sbjct: 108 -----EVPAVYAGLERKQRLLRAQE--LLQRLGLEDRVEYQPSQ-----LSGGQQQRVSI 155
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
++ + DE + LDS + +++ L Q + G VI ++ P+ +
Sbjct: 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQ--LRDRGHTVI-IVTHDPQVAAQAER 212
Query: 395 IILLSDGQIVYQGP 408
+I + DG+IV P
Sbjct: 213 VIEIRDGEIVRNPP 226
|
Length = 648 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 65/282 (23%), Positives = 96/282 (34%), Gaps = 83/282 (29%)
Query: 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYIS 232
G I + +LGP GKTT + LAG L P + D + T +Y
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD------------EGDIEIELDTVSYKP 67
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q+ E TVR+ L S+ + T TE+ KP
Sbjct: 68 QYIKADYEGTVRDLL--SSITKDFYTHPYFKTEI--------AKP--------------- 102
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
L ++ D V + +SGG+ +RV + A +DE S
Sbjct: 103 -------------LQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSA 144
Query: 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII---LLSDGQIVYQG-P 408
LD +R+ N TA + + DII L+D IV++G P
Sbjct: 145 YLDVEQRLMASKVIRRFAENNEKTAFV-----------VEHDIIMIDYLADRLIVFEGEP 193
Query: 409 RELVLEFFASMGFRCP---KRKGVADFLQE--VTSRKDQRQY 445
+ G P R G+ FL+ +T R+D
Sbjct: 194 --------SVNGVANPPQSLRSGMNRFLKNLDITFRRDPETG 227
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 59/247 (23%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L +++ + G L ++G GKT+L+ A+ G+L P +V G T
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR--SDASVVIRG----------T 680
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
AY+ Q + I TVR+ + F G+ ++ R E+A IDV
Sbjct: 681 VAYVPQV-SWIFNATVRDNILF-------GSPFDP----ERYERA--------IDV---- 716
Query: 288 IATEGQEANVITDYYLKVL-GLDVCADTMVGDEMIRG--ISGGQKKRVTTGEMMVGPALA 344
T Q L +L G D+ T +G+ RG ISGGQK+RV+ + +
Sbjct: 717 --TALQHD-------LDLLPGGDL---TEIGE---RGVNISGGQKQRVSMARAVYSNSDV 761
Query: 345 LFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
D+ + LD+ Q+ + C++ + + V + L + D IIL+ +G I
Sbjct: 762 YIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV----DRIILVHEGMI 817
Query: 404 VYQGPRE 410
+G E
Sbjct: 818 KEEGTYE 824
|
Length = 1622 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1066
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 1067 PSIDIFEAFDELFLMKRGGQE 1087
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 34/175 (19%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIT---GNITISGYP 933
L ++ +TA +G SG GK+TL+ ++ G I NI
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 934 KKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL--RLS-PEVDSE-----TRKMFID 984
A++ G Q +PF ++IY+++ F L +LS E+D T+ +
Sbjct: 89 IAL-LRAKV-GMVFQKP--TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
EV + L QS G LS Q++RL IA + P ++ +DEP S LD
Sbjct: 145 EVK-----DKLHQS--GY----SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202
V G++ G LTLL G P +GK+TL L LA +
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV 57
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 43/226 (19%)
Query: 884 LNGVSGAFRPG--VLT------------ALMGVSGAGKTTLMDVLAGRKTGGYIT---GN 926
++ VS A+R VL AL+G +G+GK+TL +L G Y G
Sbjct: 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGE 397
Query: 927 ITISGYPKKQETFA--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 984
I + G P + + R Q D P V + ++ L A + L ++ E +
Sbjct: 398 IRLDGRPLSSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDISEEQ----VW 447
Query: 985 EVMELVELNPLRQSLV-GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ +E V+L L +SL GL G LS Q++ L +A LV P I+ +DE T+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
D+ + + + V T+V H+ S I EA D + ++ RG
Sbjct: 508 DSGTEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 0.004
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 22/88 (25%)
Query: 324 ISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+SGGQ++R+ A+A L +DE ++ LD T I+ LR
Sbjct: 97 LSGGQRQRI---------AIARALLRDPPILILDEATSALDPETEALILEALRALAK-GK 146
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
VI+ T D II+L DG+
Sbjct: 147 TVIVIA---HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 318 DEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
D++ R SGG ++R+ +V P L +FMDE + GLD S ++++ LR + G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLR-GLVRELGL 203
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ + L D ++++ GQ+V G + VL+
Sbjct: 204 AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
DVS + PG + ++G SGKTTLL AL+ +L P +G V Y D
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRD 69
|
Length = 258 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFARI 942
+ G+ G L+G SG GK+TL+ ++AG + IT G I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 943 SGYCE----------QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 992
E QN P +++ E++ + +R P+ + E R + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 993 NPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 1045
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 1046 VMR 1048
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 881 LVL-LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR---KTGGYITGNITI 929
LVL ++ S G + LMG+SG+GK+TL+ V G K G G++ +
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGD---GSVDV 92
Query: 930 SGYPKKQETFAR---ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 986
+ R +S +Q + P+ T+ E++ F L + +E RK +DE
Sbjct: 93 ANCDAATLRRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQGMPKAERRKR-VDEQ 148
Query: 987 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ELV L G LS ++R+ +A I+ MDEP S LD
Sbjct: 149 LELVGLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1156 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-199 Score=1808.03 Aligned_cols=1045 Identities=54% Similarity=0.921 Sum_probs=970.7
Q ss_pred cchhHhhhHHHHhhCCChhhhhhcccccCCCCcccccccccchHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCC
Q 001108 36 EDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP 115 (1156)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1156)
+||||+|+|||+|||||++| +++.+... .++|+.+++..++..+.++..+..++|+++++.+++++++++ ++|
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p 84 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFE--SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELP 84 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhcc--CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCC
Confidence 44999999999999999999 66543211 179999999999999999999999999999999999999998 789
Q ss_pred cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHH
Q 001108 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (1156)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 195 (1156)
.++++++++.+++++..| ||+.|...+.++.++...+.. ++.+..||+|+||.++||+|++++|||||||||||
T Consensus 85 ~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttll 158 (1391)
T KOG0065|consen 85 TIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158 (1391)
T ss_pred ceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHH
Confidence 999999999999998766 999999999999988776654 55667899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCC
Q 001108 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1156)
Q Consensus 196 ~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1156)
++|+|.++...+.+|+|+|||++.+++.+++.++|++|+|.|+|+|||||||.|+++|++++.|++ +..|++++.
T Consensus 159 kal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~-- 233 (1391)
T KOG0065|consen 159 KALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA-- 233 (1391)
T ss_pred HHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH--
Confidence 999999998777789999999999999999999999999999999999999999999999998876 455555431
Q ss_pred CCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCC
Q 001108 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1156)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD 355 (1156)
.++|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|+|||
T Consensus 234 ---------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLD 292 (1391)
T KOG0065|consen 234 ---------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD 292 (1391)
T ss_pred ---------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccccc
Confidence 36899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHh
Q 001108 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1156)
Q Consensus 356 ~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 435 (1156)
++|+.+++++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||+++
T Consensus 293 SsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~ 372 (1391)
T KOG0065|consen 293 SSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTE 372 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHH
Q 001108 436 VTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLL 515 (1156)
Q Consensus 436 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~ 515 (1156)
+++++++.++|..+..|+.+.++.++.+.|.+++.+.++..+++.++++.+.++.++..++|.+++|+|+++|+.|++.+
T Consensus 373 vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l 452 (1391)
T KOG0065|consen 373 VTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL 452 (1391)
T ss_pred hhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhccccc
Q 001108 516 MKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF 595 (1156)
Q Consensus 516 ~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y 595 (1156)
++||.+++++++++.+++++++|++|+++.+ .+..+...+.|++||++++.+|+++++++++++++|||+|||+..||
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY 530 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFY 530 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccccc
Confidence 9999999999999999999999999999885 55677888999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 001108 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFAL 675 (1156)
Q Consensus 596 ~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~ 675 (1156)
++|+|.++.+++++|+.++++++|.+|+||++||.+++++||++|+++++++++++++|++++++++++.+|+++|++.+
T Consensus 531 ~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~ 610 (1391)
T KOG0065|consen 531 PPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILL 610 (1391)
T ss_pred ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcccccc------------CC---CccccHHHHHhhc
Q 001108 676 LVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFT------------QD---SSETLGVQVLKSR 740 (1156)
Q Consensus 676 l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~------------~~---~~~~~g~~~L~~~ 740 (1156)
+++.+++||+++..+||+||+|++|++|++|++++++.|||++.+|.|.. .. ...+.|..+++.+
T Consensus 611 L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~ 690 (1391)
T KOG0065|consen 611 LVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR 690 (1391)
T ss_pred HHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence 99999999999999999999999999999999999999999999999971 11 2356788899888
Q ss_pred CCc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCC
Q 001108 741 GFF-----AHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTR 815 (1156)
Q Consensus 741 ~~~-----~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1156)
++. ...+|+|+++|+++||+++|++++.+++.|+++..+.++++..+..+........+
T Consensus 691 ~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~---------------- 754 (1391)
T KOG0065|consen 691 DYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG---------------- 754 (1391)
T ss_pred cccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc----------------
Confidence 877 78899999999999999999999999999999998888776554433221100000
Q ss_pred CCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCe
Q 001108 816 SGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGV 895 (1156)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge 895 (1156)
..... .. ..+....++++++.|+.|..++++||.|.+++|.+++.+| +++++|+|||+.++||.
T Consensus 755 ~~~~~-----------~~--~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~ 818 (1391)
T KOG0065|consen 755 SSSEI-----------EK--LDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGV 818 (1391)
T ss_pred ccccc-----------cc--cccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCc
Confidence 00000 00 0001111356788999999999999999999999988887 67889999999999999
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~ 975 (1156)
++||||+||||||||||+|+||+++|.++|+|.|||+|+++..|+|.+|||+|+|.|.+.+||+|.|.|+|+||++.+++
T Consensus 819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~ 898 (1391)
T KOG0065|consen 819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVS 898 (1391)
T ss_pred eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001108 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTV 1054 (1156)
Q Consensus 976 ~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p-~illLDEPTsgLD~~~~~~i~~~l~~~~ 1054 (1156)
.+++.++|+++++.+||++++|.+||.|| +|||++|||||+||++|++|| .||||||||||||++++..|++++|+++
T Consensus 899 ~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla 977 (1391)
T KOG0065|consen 899 DEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA 977 (1391)
T ss_pred HHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999 8999999999999999999999999999
Q ss_pred hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCCcchhHHHHHHhCCCcccCCCCCCCccEEEEEeeccchhh
Q 001108 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA 1134 (1156)
Q Consensus 1055 ~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~~l~~~~~~~~~~ 1134 (1156)
++|+|||||+||||.++|+.||++++|++||++||+||+|++++++++||++++|++ |++..||||||||+++.+.+.+
T Consensus 978 ~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~ 1056 (1391)
T KOG0065|consen 978 DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEAS 1056 (1391)
T ss_pred hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999986 5555699999999999999999
Q ss_pred cCCChHHHhccCHhHHHHhhc
Q 001108 1135 LGIDFTEHYKRSDLYRYKQST 1155 (1156)
Q Consensus 1135 ~~~d~~~~~~~s~~~~~~~~~ 1155 (1156)
.+.||+++|++|++|++|+++
T Consensus 1057 ~~~D~a~~w~~S~e~k~~~e~ 1077 (1391)
T KOG0065|consen 1057 LSVDFAEIWKNSEEYKRNKEL 1077 (1391)
T ss_pred cCccHHHHHhccHHHHHHHHH
Confidence 999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-183 Score=1785.92 Aligned_cols=1132 Identities=62% Similarity=1.029 Sum_probs=986.1
Q ss_pred cccccCCCCccccC---C----CCcchhHhhhHHHHhhCCChhhhhhcccccC-----CCC---cccccccccchHhhHH
Q 001108 19 SRWNTNSIGAFSRS---S----REEDDEEALKWAALEKLPTYNRLRKGILTTS-----RGE---ANEVDVYNLGLQERQR 83 (1156)
Q Consensus 19 ~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~ 83 (1156)
++|.. +++|++. . ..|||||+|+|||+||||||+|+|++++.+. .|+ ..|+|+++|+.++++.
T Consensus 19 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1470)
T PLN03140 19 SSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQK 96 (1470)
T ss_pred hhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHH
Confidence 34643 6888542 1 2578999999999999999999999999652 122 2369999999999999
Q ss_pred HHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcc
Q 001108 84 LIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKR 163 (1156)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1156)
+++|++++.++|+++|++++++|.+++|+++|+++|+|+||+|++++.++++.+||++|.+.+.++.+.+.++...+++.
T Consensus 97 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~ 176 (1470)
T PLN03140 97 FIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKT 176 (1470)
T ss_pred HHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988776554444556
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
+++||+||||.++||++++|+|||||||||||++|+|+++|+.+++|+|+|||+++++..+++.++||+|+|.|++++||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 78899999999999999999999999999999999999998777899999999998877667889999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+|||.|+++|++.+.++++..+..+++++.++.|+.+++.+|++.+.++.+.+..++++|+.+||++|+||.||++++++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999999998776665555566667777777888888999999988888888899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999998766789999999999999999999999999999
Q ss_pred EEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCC
Q 001108 404 VYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFD 483 (1156)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (1156)
+|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++++++|++++.++.+.+++..+.+
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 496 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFD 496 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999988888887777787888999999999999998888888777766
Q ss_pred CcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHH
Q 001108 484 KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFF 563 (1156)
Q Consensus 484 ~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff 563 (1156)
+++.++.....++|..++++|+++|++|++++++||++++++|+++.+++|+++|++||+++++.....++..+.|++||
T Consensus 497 ~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff 576 (1470)
T PLN03140 497 KSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLF 576 (1470)
T ss_pred hhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Confidence 66556666666789999999999999999999999999999999999999999999999987765555567788999999
Q ss_pred HHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHH
Q 001108 564 AITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALL 643 (1156)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~ 643 (1156)
++++.+++++++++.++.++|+|+|||+.+||++|+|++++++.++|+.++++++|++|+|||+||++++++||.|++++
T Consensus 577 ~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~ 656 (1470)
T PLN03140 577 SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLV 656 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcccc
Q 001108 644 LGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKK 723 (1156)
Q Consensus 644 ~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~ 723 (1156)
++++++++++|++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||++|+++++++|||.+..|.+
T Consensus 657 ~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~ 736 (1470)
T PLN03140 657 FLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMN 736 (1470)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred c-cCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCccc
Q 001108 724 F-TQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQ 802 (1156)
Q Consensus 724 ~-~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1156)
. +.....+.|.++|+.+|+...+.|+|++++++++|+++|+++++++++|.++.....+++..+...............
T Consensus 737 ~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1470)
T PLN03140 737 KMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRS 816 (1470)
T ss_pred cccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccc
Confidence 3 223356789999999999998999999999999999999999999999998766655544222111000000000000
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceE
Q 001108 803 LSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV 882 (1156)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 882 (1156)
................+.. ....... .............++++.+|+.|..++|+||+|.++.|..++..+...+++.
T Consensus 817 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~ 894 (1470)
T PLN03140 817 LSSADGNNTREVAIQRMSN-PEGLSKN-RDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQ 894 (1470)
T ss_pred ccccccccccccccccccc-ccccccc-cccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCce
Confidence 0000000000000000000 0000000 0000000001223456778999999999999999998876654454455678
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 962 (1156)
+|+|||++++||+++||||||||||||||++|+|+.++|..+|+|.++|.+..+..+++.+|||+|+|.+++.+||+|+|
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 99999999999999999999999999999999999877778999999999876555677899999999999999999999
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1042 (1156)
.|++.+|.+...+.+++++.++++++.++|.+++++.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 99998887655666667788999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCCcchhHHHHHHhCCCcccCCCCCCCccE
Q 001108 1043 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATW 1122 (1156)
Q Consensus 1043 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~ 1122 (1156)
+..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|.|+.+++++++++||++++|+++||+++|||||
T Consensus 1055 a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~ 1134 (1470)
T PLN03140 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATW 1134 (1470)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhh
Confidence 99999999999988999999999999778999999999998899999999999999999999999898889999999999
Q ss_pred EEEEeeccchhhcCCChHHHhccCHhHHHHhh
Q 001108 1123 MLEVSAASQELALGIDFTEHYKRSDLYRYKQS 1154 (1156)
Q Consensus 1123 ~l~~~~~~~~~~~~~d~~~~~~~s~~~~~~~~ 1154 (1156)
+||+++.+.+...+.||++.|++|++++++++
T Consensus 1135 ~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~ 1166 (1470)
T PLN03140 1135 MLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKA 1166 (1470)
T ss_pred hhhhhcccccccccchHHHHHhccHHHHHHHH
Confidence 99999877666677899999999999988764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-143 Score=1414.14 Aligned_cols=997 Identities=33% Similarity=0.541 Sum_probs=806.2
Q ss_pred cchHHHHHHHHHHHhhcCCCCC--cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeece
Q 001108 94 VDNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDV 171 (1156)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 171 (1156)
.|++++++.++++.++.+...| +++|+|+||+|++ ...+....||+.|.+.+.+..+...+. ..+++.+++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4566777665555555555555 9999999999999 444566789999998887765443331 12344567899999
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCHHHHHH
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||.++++.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974211 24999999999875432 2456999999999999999999999
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
|+++++.+..+.... .+.+ ..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~~~---~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPDGV---SREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCCCC---CHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 998876422110000 0000 01123567899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcC
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1156)
||||+||++|+.+|+|+||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999875578999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCCCc---
Q 001108 409 RELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKS--- 485 (1156)
Q Consensus 409 ~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 485 (1156)
++++.+||+++||.||++.++|||+.+++++.+. +++...+. ....+.++++++|+++..++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987542 22211111 123568899999999887776665544321110
Q ss_pred ------------ccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q 001108 486 ------------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553 (1156)
Q Consensus 486 ------------~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~ 553 (1156)
...+.......|..++++|++.|++|.++.++||+..++.++++.+++|+++|++|++.+.+. .+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hh
Confidence 000111233468899999999999999999999999999999999999999999999765432 35
Q ss_pred ccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCch
Q 001108 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNA 633 (1156)
Q Consensus 554 ~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 633 (1156)
.+.+.|++||++++.++.++.+++.++.+|++|+|||..++|++++|++|+.+.++|+.++.+++|++|+|||+||.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHH
Q 001108 634 GRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 713 (1156)
Q Consensus 634 ~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 713 (1156)
++||.++++++++..++.+++++++++++++.+|+.+++++++++++|+||+++.++||+||+|++|+||++|++++++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccccc--C----------------------CCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 001108 714 NEFLGHSWKKFT--Q----------------------DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTL 769 (1156)
Q Consensus 714 nef~~~~~~~~~--~----------------------~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l 769 (1156)
|||.+..+.|.. | +...+.|.++|+. ++.....|.|.+++++++|+++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887741 1 1124578899985 34445678999999999999999999999
Q ss_pred HHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCcc
Q 001108 770 ALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVL 849 (1156)
Q Consensus 770 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1156)
++.|.++......++............... ..........+..... ......+... .......
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~e~~~~~~-----~~~~~~~~~~-~~~~~~~ 751 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGE-----------TSASNKNDIEAGEVLG-----STDLTDESDD-VNDEKDM 751 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhccc-----------ccccccccccccccCC-----CCcccccccc-ccccccc
Confidence 999988644433222211100000000000 0000000000000000 0000000000 0000001
Q ss_pred CC--CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEE
Q 001108 850 PF--EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGN 926 (1156)
Q Consensus 850 ~~--~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~ 926 (1156)
|. ....++|+|++|.++.++ +++.+|+|||++++|||++||||||||||||||++|+|+.++| +.+|+
T Consensus 752 ~~~~~~~~l~~~nl~~~~~~~~---------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~ 822 (1394)
T TIGR00956 752 EKESGEDIFHWRNLTYEVKIKK---------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD 822 (1394)
T ss_pred cccCCCceEEEEeeEEEecCCC---------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE
Confidence 11 123579999999885321 3467999999999999999999999999999999999987644 45699
Q ss_pred EEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 927 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 927 i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
|.+||.+... .+++.+|||+|+|.+++.+||+|+|.|++.++.+...+.+++++.++++++.++|.+++|+.+|.++.
T Consensus 823 I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~- 900 (1394)
T TIGR00956 823 RLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE- 900 (1394)
T ss_pred EEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-
Confidence 9999998753 46678999999999999999999999999888765556667778899999999999999999987643
Q ss_pred CCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~-illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
+|||||||||+||+||+.+|+ ||||||||||||+.++..|+++|++++++|+|||+|+|||+..+++.||++++|++||
T Consensus 901 ~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 899999999999999999997 9999999999999999999999999988899999999999976788999999999988
Q ss_pred EEEEecCCCCcchhHHHHHHhCCCcccCCCCCCCccEEEEEeeccchhhcCCChHHHhccCHhHHHHh
Q 001108 1086 QEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRYKQ 1153 (1156)
Q Consensus 1086 ~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~~l~~~~~~~~~~~~~d~~~~~~~s~~~~~~~ 1153 (1156)
+++|.|+.+.+++++++||+.+ |.++||+++|||||+||+++.+.+.....||++.|++|+++++++
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~ 1047 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVK 1047 (1394)
T ss_pred EEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHH
Confidence 9999999998889999999985 666799999999999999886554444579999999999987754
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-84 Score=791.40 Aligned_cols=585 Identities=30% Similarity=0.498 Sum_probs=493.3
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHH
Q 001108 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (1156)
Q Consensus 114 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1156)
...++++|+|+++++... .+ ..+++|+||||+++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 357889999999997542 11 4567999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhc
Q 001108 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1156)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1156)
||++|+|+......++|+|++||++.+....++.+|||.|+|.+++++||+|||.|+++++-+.. .
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~------- 137 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------L------- 137 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------C-------
Confidence 99999999987667899999999887776778899999999999999999999999999875432 0
Q ss_pred CCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCC
Q 001108 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1156)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1156)
..++.+.+++.+++.|||.+|+||+||+...|||||||||||+||..|+.+|+||||||||||
T Consensus 138 -----------------~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 138 -----------------SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -----------------CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 112345689999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHH
Q 001108 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 354 LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1156)
||+.++.++++.|+++|+. ++|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++||+||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHH
Q 001108 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISREL 513 (1156)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~ 513 (1156)
.++.+..++.+..... .........++......+............ .........++|.|+..+++|.+
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R~~ 348 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGTSPSWWTQFKILLKRSL 348 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHHHHhhhcccc-----cccccccCCcHHHHHHHHHHHHh
Confidence 9987742100000000 000011111110000000000000000000 00011116899999999999999
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHHH-HHHHHhhhchhhhhhhcc
Q 001108 514 LLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDF 592 (1156)
Q Consensus 514 ~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~l~~~~~~~~vf~ker~~ 592 (1156)
..++|++.++..|+++.+++++++|++||+.+.... ......|++||.+.+..+..+. .++.+..++++|.||+.+
T Consensus 349 ~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~ 425 (613)
T KOG0061|consen 349 KNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSS 425 (613)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhc
Confidence 999999999999999999999999999997744333 2336778888888888676655 688999999999999999
Q ss_pred cccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 001108 593 RFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGS 672 (1156)
Q Consensus 593 ~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~ 672 (1156)
++|+.++|++++.+.++|+.++.+++|++++|||+|++++..+|+.++++.++..+++.+++.++++..++...|.++++
T Consensus 426 ~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~ 505 (613)
T KOG0061|consen 426 GLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGP 505 (613)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccC--CCccccHHHHHhhcCCccccchhH
Q 001108 673 FALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWYW 750 (1156)
Q Consensus 673 ~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~L~~~~~~~~~~~~w 750 (1156)
++++.+++++||+++.++||.||+|+.|+|+++|++++++.|||.+....|... ..+...|.++++..++... ..|
T Consensus 506 ~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 583 (613)
T KOG0061|consen 506 VLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SFW 583 (613)
T ss_pred HHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--ccc
Confidence 999999999999999999999999999999999999999999999744444332 3456788999998887654 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 001108 751 LGLGALFGFVLLLNFAYTLALTFLD 775 (1156)
Q Consensus 751 ~~~~~l~~~~~~f~~~~~l~l~~~~ 775 (1156)
.++.++++++++|++++++++++..
T Consensus 584 ~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 584 LDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-83 Score=787.02 Aligned_cols=609 Identities=21% Similarity=0.325 Sum_probs=471.8
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHH
Q 001108 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (1156)
Q Consensus 114 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1156)
.++++++|.|+++.+.......+... +...+..-.. ......+...+.+|+|||++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~-~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPK-ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccc-cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45799999999999754210111100 0111100000 000011223467999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhc
Q 001108 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1156)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1156)
||++|+|+++|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++..... .
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~------ 174 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------T------ 174 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------C------
Confidence 999999998874 3589999999987532 245699999999999999999999998765421100 0
Q ss_pred CCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCC
Q 001108 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1156)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1156)
.++...+++++++.+||++++||.||+...++|||||||||+||++|+.+|+||||||||+|
T Consensus 175 ------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 175 ------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 00112356789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHH
Q 001108 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 354 LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1156)
||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+++++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999876 5789999999988889999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcC---CCCCcc-----cccc-cccCccccCcHHHH
Q 001108 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT---PFDKSK-----SHRA-ALTTETYGVGKREL 504 (1156)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-----~~~~-~l~~~~~~~s~~~~ 504 (1156)
.++++...+.......+.+ ...+.+.+.|++... ....+.... .....+ ..+. ......+..++|.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998754321000000001 112333444432111 111111100 000000 0000 00112245689999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHH-hHHHHHHHHhhhc
Q 001108 505 LKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKL 583 (1156)
Q Consensus 505 ~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~l~~~~~~~ 583 (1156)
+..+++|.++. +|+..+...|+++.+++|+++|++||+.+ ..+.+.+.|++||.+++.++ ..++.++.+..++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78888888999999999999999999653 23456778999998877554 5567888888999
Q ss_pred hhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001108 584 PVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663 (1156)
Q Consensus 584 ~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~ 663 (1156)
++|+|||.+++|++++|++|+++.++|+.++.+++|++|+|||+|+.+++++||.|+++++++.+++++++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc-----ccccCCCccccHHHHHh
Q 001108 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-----KKFTQDSSETLGVQVLK 738 (1156)
Q Consensus 664 ~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~g~~~L~ 738 (1156)
+.+|+.+++++++++++|+||+++ +||+||+|++|+||++|++++++.|||.+.+. .|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 79999999999999999999999999976432 34221100001111222
Q ss_pred hcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001108 739 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (1156)
Q Consensus 739 ~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~ 775 (1156)
...+. ....|.+++++++++++|+++++++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 235788999999999999999999998654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-83 Score=789.78 Aligned_cols=569 Identities=25% Similarity=0.415 Sum_probs=481.6
Q ss_pred cccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCC
Q 001108 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1156)
+.++++|+|+|++++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.+|||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34567999999999999999999999999999999999998875456899999999876545567899999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc-
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM- 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (1156)
||+|||.|+++++.+.... .++....++.+++.+||++++||.||+.+
T Consensus 115 TV~e~l~f~~~~~~~~~~~-------------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVT-------------------------------KKEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCC-------------------------------HHHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 9999999998776322100 01122457889999999999999999864
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
.++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 689999999999999999999999999999999999999999999999876 5789999999999999999999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 001108 401 GQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480 (1156)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1156)
|+++|+|+++++.+||+++||+||++.||+||+.++.+....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998865322110 0 011234566666665554443333221
Q ss_pred CCCCcc---cccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccch
Q 001108 481 PFDKSK---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (1156)
Q Consensus 481 ~~~~~~---~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~ 557 (1156)
...... ..........+..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+.+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 111000 00001122356789999999999999999999999999999999999999999999765432 345566
Q ss_pred hHHHHHHHHHHHHhHH-HHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHH
Q 001108 558 AGATFFAITMVNFNGF-SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRF 636 (1156)
Q Consensus 558 ~g~lff~~~~~~~~~~-~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f 636 (1156)
.|++|+.++..+|.+. ..++.+..++++|+|||..++|++++|++++.+.++|+.++.+++|++++|||+|+.+++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 8889998888777754 456777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhh
Q 001108 637 FKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716 (1156)
Q Consensus 637 f~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef 716 (1156)
|.++++++++..++.+++.++++++++..+|+.+++++++++++|+||+++.++||.||+|++|+||++|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccccCC---CccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001108 717 LGHSW-KKFTQD---SSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774 (1156)
Q Consensus 717 ~~~~~-~~~~~~---~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~ 774 (1156)
.+..+ .|...+ .+...|.++|+.+|+..+ +.|.+++++++++++|+++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775 343211 123468999999988654 458999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-81 Score=821.03 Aligned_cols=595 Identities=22% Similarity=0.377 Sum_probs=498.8
Q ss_pred CCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCc
Q 001108 111 GIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSG 190 (1156)
Q Consensus 111 ~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsG 190 (1156)
.++...+.+.|+||+|+++...+.+. ...++.++.+|+|||+.++||++++|+||||||
T Consensus 860 ~~~~~~~~~~~~~v~y~v~~~~~~~~---------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaG 918 (1470)
T PLN03140 860 VLPFTPLAMSFDDVNYFVDMPAEMKE---------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAG 918 (1470)
T ss_pred ccCCCcceEEEEEEEEEEccCccccc---------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCCC
Confidence 34566778999999999865321100 011223457999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHH
Q 001108 191 KTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270 (1156)
Q Consensus 191 KSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 270 (1156)
|||||++|+|+.++. .++|+|.+||++.++...++.+|||+|+|.|++.+||+|||.|++.++.+... .
T Consensus 919 KTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~-------~--- 987 (1470)
T PLN03140 919 KTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV-------S--- 987 (1470)
T ss_pred HHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC-------C---
Confidence 999999999997642 45899999998875444457799999999999999999999998765421110 0
Q ss_pred HhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecC
Q 001108 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEI 350 (1156)
Q Consensus 271 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEp 350 (1156)
.++....++++++.+||.+++|+.||+..+++|||||||||+||++|+.+|++||||||
T Consensus 988 ---------------------~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP 1046 (1470)
T PLN03140 988 ---------------------KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046 (1470)
T ss_pred ---------------------HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 00112357889999999999999999888889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC-CeEEEEcCh----hHHHHHHHhc-CC-CC
Q 001108 351 STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-GQIVYQGPR----ELVLEFFASM-GF-RC 423 (1156)
Q Consensus 351 tsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~ 423 (1156)
|||||+.++..+++.|++++. .++|+|+++|||..++++.||++++|++ |+++|+|+. +++.+||+++ |+ +|
T Consensus 1047 TsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~ 1125 (1470)
T PLN03140 1047 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKI 1125 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCC
Confidence 999999999999999999876 5789999999998889999999999996 899999996 6899999997 66 49
Q ss_pred CCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc---CCCCCcccccccccCccccCc
Q 001108 424 PKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR---TPFDKSKSHRAALTTETYGVG 500 (1156)
Q Consensus 424 p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~l~~~~~~~s 500 (1156)
|+..|||||+.++++..... ....++.+.|+.++.++...+.+. .+.... +.......|..+
T Consensus 1126 p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s 1190 (1470)
T PLN03140 1126 KEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGA---SDLYFATQYSQS 1190 (1470)
T ss_pred CCCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCc---cccccCccccCC
Confidence 99999999999997643211 112367788888776665544332 221111 111123568899
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHH-HHHHHH
Q 001108 501 KRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGF-SEISMT 579 (1156)
Q Consensus 501 ~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~-~~l~~~ 579 (1156)
++.|++.|++|.++..+||+.++..|+++.+++|+++|++||+.+.+..+..+.+...|++|+++++..++.. +.++.+
T Consensus 1191 ~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~ 1270 (1470)
T PLN03140 1191 TWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMV 1270 (1470)
T ss_pred HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998776555456666678999998888777554 445777
Q ss_pred hhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001108 580 IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAV 659 (1156)
Q Consensus 580 ~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~ 659 (1156)
..+|++|+|||..++|++++|++++++.++|+.++.+++|.+++|||+||.++++.||.++++++++.+++.+++.++++
T Consensus 1271 ~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a 1350 (1470)
T PLN03140 1271 AVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVS 1350 (1470)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccCCC-ccccHHHH-H
Q 001108 660 TGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS-SETLGVQV-L 737 (1156)
Q Consensus 660 ~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~-~~~~g~~~-L 737 (1156)
++++..+|..++++++.++++|+||++++++||.||+|+||+||+.|++++++.|||.+....|.+++. ....+.++ +
T Consensus 1351 ~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1430 (1470)
T PLN03140 1351 LTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQ 1430 (1470)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987776655432 12345555 5
Q ss_pred hhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001108 738 KSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDP 776 (1156)
Q Consensus 738 ~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~ 776 (1156)
..+|+. ..|.|.+++++++|+++|.++++++++++++
T Consensus 1431 ~~~g~~--~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1431 DHYGYD--PDFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HhcCcC--cccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 667775 4478899999999999999999999999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-79 Score=751.77 Aligned_cols=833 Identities=22% Similarity=0.275 Sum_probs=460.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHH-hhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRI-DRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
...++....+++++++..+. +...- ..--..-...+|+|+||+++|.
T Consensus 314 f~~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYP--------------------------- 361 (1228)
T KOG0055|consen 314 FAKARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYP--------------------------- 361 (1228)
T ss_pred HhccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCC---------------------------
Confidence 56777888889998887765 22111 1112233578999999999973
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
++ ++..||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|++||.++.++.. +.++|.|+|
T Consensus 362 ---sR-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 362 ---SR-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQ 434 (1228)
T ss_pred ---CC-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeee
Confidence 23 2466999999999999999999999999999999999999999 9999999999987765 478999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
+|.+| ..||+|||.|+. ++...+...++++...+ .--+..|++.+|
T Consensus 435 ePvlF-~~tI~eNI~~G~----~dat~~~i~~a~k~ana-----------------------------~~fi~~lp~g~~ 480 (1228)
T KOG0055|consen 435 EPVLF-ATTIRENIRYGK----PDATREEIEEAAKAANA-----------------------------HDFILKLPDGYD 480 (1228)
T ss_pred chhhh-cccHHHHHhcCC----CcccHHHHHHHHHHccH-----------------------------HHHHHhhHHhhc
Confidence 99655 679999999975 22233333444433211 112456899999
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.||++++. |||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++.. .++|+|+.. | +..+.+.+|
T Consensus 481 T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVa-H-RLStIrnaD 555 (1228)
T KOG0055|consen 481 TLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVA-H-RLSTIRNAD 555 (1228)
T ss_pred ccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEe-e-ehhhhhccC
Confidence 999998885 99999999999999999999999999999999999999999998864 355666643 3 445666699
Q ss_pred eEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHH--HhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhh
Q 001108 394 DIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL--QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVG 471 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1156)
+|++|++|+||+.|+++|++.. .--.++.+ |+.....+. ..+. . +..+....+...
T Consensus 556 ~I~v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~---~--------~~~~~~~~s~~~ 613 (1228)
T KOG0055|consen 556 KIAVMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEE---E--------SLKEERSRSLKS 613 (1228)
T ss_pred EEEEEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-cccc---c--------chhhhhhhcccc
Confidence 9999999999999999999862 00112221 111111110 0000 0 000000000000
Q ss_pred hhhHHhhcCCCCC-------cccc--cccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-------HHH
Q 001108 472 QKISDELRTPFDK-------SKSH--RAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAF-------VAV 535 (1156)
Q Consensus 472 ~~~~~~l~~~~~~-------~~~~--~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~-------~~l 535 (1156)
+............ .+.. ...........+ +.|-+...+.++.+.+...+..++ .++
T Consensus 614 s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s--------~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~ 685 (1228)
T KOG0055|consen 614 SSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVS--------FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAY 685 (1228)
T ss_pred ccccccccCCcccccccccccccccccccccccccccc--------HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHH
Confidence 0000000000000 0000 000001112223 334444445555554444333333 233
Q ss_pred HHHHHhhccc-CCCcccccccchhHHHHHHHHHHHHh--HHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHH
Q 001108 536 VYMTLFLRTK-MHKDTVTDGGIFAGATFFAITMVNFN--GFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVS 612 (1156)
Q Consensus 536 i~gt~f~~~~-~~~~~~~~~~~~~g~lff~~~~~~~~--~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~ 612 (1156)
+++.++--.. .+.+........+.++|.++....+. .+......+.. -.+..++-.
T Consensus 686 ~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~g--------------------e~Lt~R~R~- 744 (1228)
T KOG0055|consen 686 VFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAG--------------------EKLTKRLRS- 744 (1228)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHH-
Confidence 3332221101 11111111111233333333221111 00000000000 001111111
Q ss_pred HHHHHHHHHHhhhhccccCc---hhHHHHHHHHHH-----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----
Q 001108 613 FLEVAVWVFLSYYVVGYDSN---AGRFFKQYALLL-----GVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS---- 680 (1156)
Q Consensus 613 ~~~~~i~~~i~Y~~~g~~~~---~~~ff~~~l~~~-----~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l---- 680 (1156)
..|..+++.=+++-.+ .++....+.... ++..-...+...++++.-.+.+|..++|-+.++.+.
T Consensus 745 ----~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pl 820 (1228)
T KOG0055|consen 745 ----MMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPL 820 (1228)
T ss_pred ----HHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222222111 133333322111 111112223333344444445555544433333222
Q ss_pred --hhhcccCcCchhHHHHHHHhhcH---HHHHHHHHHHHhhcCCccccccCCCccccHHHHHhhcCC-------ccccch
Q 001108 681 --LGGFILSREDIKKWWKWAYWCSP---LTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGF-------FAHEYW 748 (1156)
Q Consensus 681 --~~Gf~i~~~~ip~~~~W~~~isp---~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~-------~~~~~~ 748 (1156)
++++... +++.-.+. -.|.-.+-+++|-..+-... ........++..+.- ......
T Consensus 821 l~~~~~~~~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV----~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 821 LILSGYLQK--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTV----AALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222110 00000000 00111111122211100000 000001111111100 000112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCCCCCCCcccccccc
Q 001108 749 YWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSS 828 (1156)
Q Consensus 749 ~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1156)
.|.+++.-+...+.| +.+.++++|-..+-............. .....+++..........|.-.......
T Consensus 889 ~i~gl~f~~sqs~~~-~~~A~~f~~G~~Li~~g~~~~~~~~~v---------f~~l~~ta~~~~~~~s~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLF-FVYALSFWYGARLISNGEMTFEDVFRV---------FMALSFTAMALGQASSYAPDISKAKIAA 958 (1228)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhHHHHhcCCcCHHHHHHH---------HHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 233333323222222 233444444322111111000000000 0000000000000000111110000000
Q ss_pred cchhhhhhhhc--CCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCc
Q 001108 829 SQSLSLAEAEA--SRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAG 906 (1156)
Q Consensus 829 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaG 906 (1156)
.......+..+ +.....+...|.-.+.++|+||.|.||..| +.++|+|+|++|++|+.+|||||||||
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCC
Confidence 00000001010 111122333444567899999999998764 467999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHH
Q 001108 907 KTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI 983 (1156)
Q Consensus 907 KTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v 983 (1156)
|||.+.+|-+... +..|.|.|||.+++. ...|+++|.|.|+|.++. -|++||+.|+ .. +++.+ .+
T Consensus 1029 KSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG--~~---~vs~~----eI 1096 (1228)
T KOG0055|consen 1029 KSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYG--SE---EVSEE----EI 1096 (1228)
T ss_pred HHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhcc--CC---CCCHH----HH
Confidence 9999999987655 679999999998765 456788999999999975 6999999998 11 13332 24
Q ss_pred HHHHHHcC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001108 984 DEVMELVE-------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056 (1156)
Q Consensus 984 ~~~l~~l~-------l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~ 1056 (1156)
.++++..+ |.+-.|+.+|..|. +||||||||++|||||++||+||+|||.||+||.++.+.|+++|.+.. .
T Consensus 1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~ 1174 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-E 1174 (1228)
T ss_pred HHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-c
Confidence 44544443 44556788887754 799999999999999999999999999999999999999999999874 6
Q ss_pred CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1057 g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||.|+++|++| ....+|.+.++++ |++++.|.
T Consensus 1175 gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~Gt 1207 (1228)
T KOG0055|consen 1175 GRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGT 1207 (1228)
T ss_pred CCcEEEEecchh--hhhcCCEEEEEEC-CEEEeccc
Confidence 999999999987 4688999999986 79999997
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-78 Score=744.21 Aligned_cols=560 Identities=23% Similarity=0.365 Sum_probs=474.4
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
.++.+|+||+|.++||.+|||||+|||||||||++|||+... +.++|+|++||.+.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 567799999999999999999999999999999999999865 4789999999999987778899999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|||.|.|+|.++.+.. ++.++..+.+|++++.|+|++++|.+||..+ +
T Consensus 881 VrESL~fSA~LRlp~~-------------------------------v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKE-------------------------------VSDEEKYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCc-------------------------------CCHHHHHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 9999999998874321 1122334679999999999999999999988 8
Q ss_pred CCChhHHHHHHHHHHHhcCC-ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc-C
Q 001108 323 GISGGQKKRVTTGEMMVGPA-LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS-D 400 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p-~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~-~ 400 (1156)
|||.+||||++||..|+.+| .||||||||||||+.++..|++.+|+++. .|+|++|+||||+..+++.||++++|. +
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999997 789999999999999999999999996 6
Q ss_pred CeEEEEcChh----HHHHHHHhcC-CCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhH
Q 001108 401 GQIVYQGPRE----LVLEFFASMG-FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKIS 475 (1156)
Q Consensus 401 G~iv~~G~~~----~~~~~f~~~G-~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1156)
|++||.||.. .+++||++.| .+||...|||||+.|+++...+.. ...++++.|++|..++++.
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999974 4677999987 999999999999999987643321 1237889999999888776
Q ss_pred Hhhc---CCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccc
Q 001108 476 DELR---TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552 (1156)
Q Consensus 476 ~~l~---~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~ 552 (1156)
+++. .+... ..........|+.|+|.|++.|++|++...||++.+...|++..++.++++|+.||+.+ .+.+
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q 1150 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQ 1150 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHH
Confidence 6543 33332 12223345568999999999999999999999999999999999999999999999877 3456
Q ss_pred cccchhHHHHHHHHHHHHhHHH-HHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccC
Q 001108 553 DGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631 (1156)
Q Consensus 553 ~~~~~~g~lff~~~~~~~~~~~-~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 631 (1156)
+.++.+++.|.++++...+.-. ..+..-.++-++||||..++|+..+|+++.+++++|+.++.+.+|.++.||++||..
T Consensus 1151 ~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~ 1230 (1391)
T KOG0065|consen 1151 GLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW 1230 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh
Confidence 7777888888887766554333 445555688999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHH
Q 001108 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 711 (1156)
Q Consensus 632 ~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 711 (1156)
++.+|+.+++..+.+.+....++.++.+++|+..+|..+.++++.++.+|+||++++..||.||+|+||+||+.|..+++
T Consensus 1231 ~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1231 TASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCC-------CccccHHHHHhhcC----CccccchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001108 712 VANEFLGHSWKKFTQD-------SSETLGVQVLKSRG----FFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (1156)
Q Consensus 712 ~~nef~~~~~~~~~~~-------~~~~~g~~~L~~~~----~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~ 775 (1156)
+...+.+..-.|...+ ...+.|...-..+| +..+... ....+.++|.+.+.+++.+..+|.+
T Consensus 1311 i~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1311 ISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHHH
Confidence 9999998766654322 33456655555455 3222111 1112233455556666666666654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-75 Score=769.01 Aligned_cols=577 Identities=24% Similarity=0.351 Sum_probs=473.3
Q ss_pred cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHH
Q 001108 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (1156)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 195 (1156)
...++|+||++.+.. ++.++.+|+|||+.++||++++|+|||||||||||
T Consensus 757 ~~~l~~~nl~~~~~~------------------------------~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL 806 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKI------------------------------KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL 806 (1394)
T ss_pred CceEEEEeeEEEecC------------------------------CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHH
Confidence 345899999988632 12235699999999999999999999999999999
Q ss_pred HHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCC
Q 001108 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1156)
Q Consensus 196 ~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1156)
++|+|+.++....+|+|.+||++++. ..++.+|||+|+|.+++.+||+|||.|+++++.+...
T Consensus 807 ~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~---------------- 869 (1394)
T TIGR00956 807 NVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV---------------- 869 (1394)
T ss_pred HHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC----------------
Confidence 99999987321227999999998753 3467899999999999999999999999876532110
Q ss_pred CCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCc-cceeecCCCCC
Q 001108 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL-ALFMDEISTGL 354 (1156)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~-vllLDEptsgL 354 (1156)
..++....++++++.+||.+++|+.||+.+. +|||||||||+||++|+.+|+ |||||||||||
T Consensus 870 ---------------~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 870 ---------------SKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred ---------------CHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 0011223578899999999999999997544 799999999999999999997 99999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC-eEEEEcCh----hHHHHHHHhcCC-CCCCCCC
Q 001108 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG-QIVYQGPR----ELVLEFFASMGF-RCPKRKG 428 (1156)
Q Consensus 355 D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G-~iv~~G~~----~~~~~~f~~~G~-~~p~~~~ 428 (1156)
|+.++..|++.|+++++ .++|+|+++|||...+++.||+|++|++| +++|+|+. +++.+||+++|+ +||+..|
T Consensus 934 D~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~N 1012 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDAN 1012 (1394)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCC
Confidence 99999999999999875 57899999999988888999999999987 99999997 578999999996 9999999
Q ss_pred hHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc---CCCCCcccccccccCccccCcHHHHH
Q 001108 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR---TPFDKSKSHRAALTTETYGVGKRELL 505 (1156)
Q Consensus 429 ~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~l~~~~~~~s~~~~~ 505 (1156)
||||+.|+.+...... ...++.+.|+.+...+...+++. .+..............+|..+++.|+
T Consensus 1013 pAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~ 1080 (1394)
T TIGR00956 1013 PAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQF 1080 (1394)
T ss_pred HHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHH
Confidence 9999999876432110 01234556665554444333221 11110100000112246889999999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchh
Q 001108 506 KANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPV 585 (1156)
Q Consensus 506 ~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~v 585 (1156)
+.+++|.++..+||+.+...|+++.+++|+++|++|++.+.+ ..+.+...|++|+.+++..+.....++.++.++++
T Consensus 1081 ~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~ 1157 (1394)
T TIGR00956 1081 KLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDL 1157 (1394)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999999999999999999999999977643 34566778888888776655555566677777776
Q ss_pred -hhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhH-------HHHHHHHHHHHHHHHHHHHHHH
Q 001108 586 -FYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGR-------FFKQYALLLGVNQMASALFRFI 657 (1156)
Q Consensus 586 -f~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~-------ff~~~l~~~~~~~~~~~l~~~i 657 (1156)
|+|||.+++|++++|++++.+.++|+.++.+++|.+++||++|+.+++.. |+.++++++++..++.+++.++
T Consensus 1158 ~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~ 1237 (1394)
T TIGR00956 1158 YEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMV 1237 (1394)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999888765 9999999999999999999999
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccC-----------
Q 001108 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ----------- 726 (1156)
Q Consensus 658 a~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~----------- 726 (1156)
++++++..+|..++++++.++++|+||+++.++||.||+|++|+||++|++++++.|||.+....|...
T Consensus 1238 ~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~ 1317 (1394)
T TIGR00956 1238 ISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQ 1317 (1394)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999877655320
Q ss_pred --------------------CC---c----cccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001108 727 --------------------DS---S----ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774 (1156)
Q Consensus 727 --------------------~~---~----~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~ 774 (1156)
+. + ...|.++|+.+++...+ .|.+++++++|++++ ++.++++.|.
T Consensus 1318 tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~--~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1318 TCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG--RWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred CHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc--cccchhhhhHHHHHH-HHHHHhhheE
Confidence 00 1 34788899988776544 588999999998877 6666777664
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-73 Score=741.99 Aligned_cols=216 Identities=27% Similarity=0.409 Sum_probs=188.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +++.+|+||||.|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 5889999888741 12569999999999999999999999999999999999876 5689999999886
Q ss_pred Ch--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
.. ...++.+|||||++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+++++.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999999877763 233444567889999999998888774 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||||+||+||+.+|+||||||||+|||+.+++.+++.|+++.++|+|||+|||+++ ++...|||+++|.+ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999987 57789999999986 78999887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 2154 ~ 2154 (2272)
T TIGR01257 2154 I 2154 (2272)
T ss_pred H
Confidence 4
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-72 Score=710.34 Aligned_cols=799 Identities=20% Similarity=0.273 Sum_probs=449.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.-++..+++|+.+.+..+... .+...+.+.+.+...+.++|.+++=+.
T Consensus 483 ~vqa~VS~~Ri~~fl~~~e~~-----~~~~~~~~~~~~~~~i~i~~~sfsW~~--------------------------- 530 (1381)
T KOG0054|consen 483 LVQAKVSLKRLKEFLLSEELD-----PDSVERSPDEAGENAIEIKNGSFSWDS--------------------------- 530 (1381)
T ss_pred HHHHHHHHHHHHHHhcCcccC-----ccccccCCCCCCCceEEEeeeeEecCC---------------------------
Confidence 346788888888887666431 111122344455667888888877432
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~ 237 (1156)
....+.|+|||+.|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .++||+|.+ |
T Consensus 531 ----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~p-W 592 (1381)
T KOG0054|consen 531 ----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQP-W 592 (1381)
T ss_pred ----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEecccc-H
Confidence 11223899999999999999999999999999999999999876 99999998 499999987 5
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
+.+.||||||.|+..+. ..+|+...++|..+++..+.|++| .|.||
T Consensus 593 I~ngTvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIG 638 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIG 638 (1381)
T ss_pred hhCCcHHHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceec
Confidence 56789999999998664 478999999999988877777666 59999
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~-~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
++++ +||||||||+++|||++++++|++||+|.|++|+++..+|++ +++.+. .++|+|++ +| ..+....+|.|+
T Consensus 639 ErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILV-TH-ql~~L~~ad~Ii 713 (1381)
T KOG0054|consen 639 ERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILV-TH-QLQFLPHADQII 713 (1381)
T ss_pred CCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEE-eC-chhhhhhCCEEE
Confidence 9988 599999999999999999999999999999999999999995 775542 34566654 44 567889999999
Q ss_pred EEcCCeEEEEcChhHHHH---HHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhh
Q 001108 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQK 473 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1156)
+|++|+|+..|+++|+++ .|+++ ...+. ...+.. .....+.......+. +. +.......
T Consensus 714 vl~~G~I~~~Gty~el~~~~~~~~~l-~~~~~------------~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~ 775 (1381)
T KOG0054|consen 714 VLKDGKIVESGTYEELLKSGGDFAEL-AHEEE------------SEQEEE---ASEKDLESGESSRES-ES-RSLESLSS 775 (1381)
T ss_pred EecCCeEecccCHHHHHhcchhHHHH-hhccc------------hhhccc---cccccccccccccch-hh-hhhhhhcc
Confidence 999999999999999984 33332 00000 000000 000000000000000 00 00000000
Q ss_pred hHHhhcCCCCCccccccccc---CccccCcHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHH-HHHHHHHHhhcccCCC
Q 001108 474 ISDELRTPFDKSKSHRAALT---TETYGVGKRELLKANISRELLLMKRNSFVYI-FKLIQIAF-VAVVYMTLFLRTKMHK 548 (1156)
Q Consensus 474 ~~~~l~~~~~~~~~~~~~l~---~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~-~r~~~~~~-~~li~gt~f~~~~~~~ 548 (1156)
..+. . ...+. ...... ....+.-.|... ..+.....-..+.. +-++.... +..+....|+..+.+.
T Consensus 776 ~~~~-~-~~~~~--~~~~~~~~ee~~~G~v~~~vY-----~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~ 846 (1381)
T KOG0054|consen 776 EEEK-S-KDEKE--EEDKLVQEEERETGKVSWSVY-----KKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDD 846 (1381)
T ss_pred cccc-c-ccccc--hhhHHHHHHHHhcCEeeHHHH-----HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0000 0 00000 000000 000000001110 11111100111111 01111111 1122222333222222
Q ss_pred cc--c---ccccch----hHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHH
Q 001108 549 DT--V---TDGGIF----AGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVW 619 (1156)
Q Consensus 549 ~~--~---~~~~~~----~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~ 619 (1156)
.. . .+...| ....+...++.++.++......+.....++.+ +-+.+++.|+.|+++
T Consensus 847 ~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~------------ml~~Ilrapm~FFdt--- 911 (1381)
T KOG0054|consen 847 GEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDK------------LLNSILRAPMSFFDT--- 911 (1381)
T ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhCcchhcCC---
Confidence 11 0 111111 11112222222222222222222111111111 334566677777664
Q ss_pred HHHhhhhccccCchhHHHHHHHHHHHH---------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcc-----
Q 001108 620 VFLSYYVVGYDSNAGRFFKQYALLLGV---------NQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFI----- 685 (1156)
Q Consensus 620 ~~i~Y~~~g~~~~~~~ff~~~l~~~~~---------~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~----- 685 (1156)
.+.||.++.|...... ..+...+..+++.+ .+++...-.+++.++.++..|+
T Consensus 912 -----------TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~---~vi~~~~P~fli~~~pl~v~~~~~~~~ 977 (1381)
T KOG0054|consen 912 -----------TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGIL---VVISYVTPWFLIAIIPLGVIYYFVQRY 977 (1381)
T ss_pred -----------CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5678888877543322 11112222222211 1122211112222112111111
Q ss_pred --cCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccCCCccccHHHHHhhcCCc--------------------
Q 001108 686 --LSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFF-------------------- 743 (1156)
Q Consensus 686 --i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~-------------------- 743 (1156)
....+++..- ...-||+.-.+..- ..|..++++++-.
T Consensus 978 Y~~tsReLkRLe--sitRSPi~sh~~Et-------------------l~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~ 1036 (1381)
T KOG0054|consen 978 YLATSRELKRLE--SITRSPIYSHFSET-------------------LQGLSTIRAFGKEERFIQENDELIDENSRAFFL 1036 (1381)
T ss_pred HHHHhHHHHHhh--hcccchHHHhHHHH-------------------hcCcceeeeccccHHHHHHHHHHhhhhHHHHHH
Confidence 0001111000 00122332221111 1122222222211
Q ss_pred cccchhHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCccccc-----ccCCCCCCCCCC
Q 001108 744 AHEYWYWLGLGA--LFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLS-----TLGGSSNHNTRS 816 (1156)
Q Consensus 744 ~~~~~~w~~~~~--l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 816 (1156)
......|+++-. +..+++++ .+.+++...... ... +.+++. .+++..++..+.
T Consensus 1037 ~~~a~RWla~Rle~ig~~~v~~--~al~~vl~~~~~-~~~-----------------g~vGLslsyal~lt~~l~~~vR~ 1096 (1381)
T KOG0054|consen 1037 SISANRWLAVRLELLGNLVVLI--AALFAVLLPSGL-ISP-----------------GLVGLSLSYALQLTGLLQWLVRQ 1096 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCC-CCc-----------------chHHHHHHHHHHHHHHHHHHHHH
Confidence 001123444322 21211111 111111111100 000 001100 000000000000
Q ss_pred CCCCccccccccc---chhhhhhhhcCCCC--C-CCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEE
Q 001108 817 GSTDDIRGQQSSS---QSLSLAEAEASRPK--K-KGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGA 890 (1156)
Q Consensus 817 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~ 890 (1156)
. .+.+..+.++ .+....+.+..... . ....|| +.+.++|+|++.+|.. +-..+|+||||+
T Consensus 1097 ~--~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP-~~G~I~f~~~~~RYrp-----------~lp~VLk~is~~ 1162 (1381)
T KOG0054|consen 1097 S--SELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWP-SKGEIEFEDLSLRYRP-----------NLPLVLKGISFT 1162 (1381)
T ss_pred H--HHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCC-CCCeEEEEEeEEEeCC-----------CCcchhcCceEE
Confidence 0 0000001111 11111011111111 1 112222 3468999999877752 224699999999
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHH
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~ 967 (1156)
|+|||++||||++|||||||+++|.+... +.+|.|.|||.++.+ ...|++++.+||+|.++. -|+|.||
T Consensus 1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----- 1234 (1381)
T KOG0054|consen 1163 IKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----- 1234 (1381)
T ss_pred EcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Ccccccc-----
Confidence 99999999999999999999999998776 468999999999765 457788999999998864 3555554
Q ss_pred hhCCCCCChHHHHHHHHHHHHHcCCCcccccccC------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 968 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 968 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~------~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
|+..+..++.++++||.++|.+...+..+ .+++.++|-||||.+|+||||+++++||+|||+|+++|++
T Consensus 1235 -----DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~ 1309 (1381)
T KOG0054|consen 1235 -----DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309 (1381)
T ss_pred -----CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChH
Confidence 66666677889999999999876544332 2356789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+...|+++||+..+ +||||++.|+.+. ...+|||+||++ |+++++|.+
T Consensus 1310 TD~lIQ~tIR~~F~-dcTVltIAHRl~T--Vmd~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1310 TDALIQKTIREEFK-DCTVLTIAHRLNT--VMDSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeeccch--hhhcCeEEEeeC-CeEeecCCh
Confidence 99999999999874 7999999999874 456899999997 699999886
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-69 Score=718.05 Aligned_cols=211 Identities=22% Similarity=0.301 Sum_probs=178.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
+.++|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 57999999999852 12359999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.+ ...++.++||||++.++.. |++|||.+.. .. .++.++++++.+++.+.. |+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 4567889999999999864 9999997531 11 234578888888876543 4445443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999885 5899999999986 4567999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 799999974
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-69 Score=710.16 Aligned_cols=216 Identities=19% Similarity=0.313 Sum_probs=179.3
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC------------
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 921 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------------ 921 (1156)
..++|+||+|+|+.. ++.++|+|+||+|+||+++||+||||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 469999999999632 1246999999999999999999999999999999999976531
Q ss_pred ----------------------------------------eEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCH
Q 001108 922 ----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 922 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
+.+|+|.+||.++.+ ..+++.+|||+|++.++. .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 148999999998754 457788999999999874 799
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
+|||.|+. ++.+ ++.++++++..++.++ .|+.+|.. ...||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 2233 2346777777776543 36667754 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecC---cE-EEEecC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GQ-EIYVGP 1092 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G---g~-~~~~g~ 1092 (1156)
|||||+||+++.+.|++.|+++. .+|+|+|+++|+++ ..+.||++++|++| |+ ++..|+
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecC
Confidence 99999999999999999999986 36899999999985 56789999999983 56 557887
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-68 Score=708.85 Aligned_cols=211 Identities=20% Similarity=0.278 Sum_probs=178.5
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 46999999999942 12469999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.+ ..+++.++||||++.+++ -|++|||.+.. +.+ ++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 456788999999999887 49999997531 122 34578888888886543 3444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 5899999999985 4567999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 799999984
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-68 Score=616.27 Aligned_cols=491 Identities=26% Similarity=0.330 Sum_probs=377.3
Q ss_pred eEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 001108 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1156)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1156)
=++.+||++++... .....+++||||++.+||+++|+|.|||||||+.++
T Consensus 5 lL~V~nL~v~~~~~------------------------------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~ 54 (539)
T COG1123 5 LLEVENLTVEFATD------------------------------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALA 54 (539)
T ss_pred eEEEeceEEEEecC------------------------------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHH
Confidence 47899999998653 122569999999999999999999999999999999
Q ss_pred HhcCCCCC-CCceeEEEEcCccCCCcCc-------cceEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHH
Q 001108 198 LAGKLDPT-LKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267 (1156)
Q Consensus 198 L~G~~~~~-~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~ 267 (1156)
|.|.+++. ...+|+|.++|.++..... .+.++||+|++ .+-|-+||.+.|.-..+.++...
T Consensus 55 i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~--------- 125 (539)
T COG1123 55 LMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS--------- 125 (539)
T ss_pred HhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcccc---------
Confidence 99999986 4568999999997654432 26799999985 46777899888876655543211
Q ss_pred HHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCcccee
Q 001108 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347 (1156)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllL 347 (1156)
..+...++.++|+..||++.... +++++.|||||||||.||+||+.+|++|++
T Consensus 126 ------------------------~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIa 178 (539)
T COG1123 126 ------------------------RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIA 178 (539)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEE
Confidence 11233456788999999987654 668899999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCC
Q 001108 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRK 427 (1156)
Q Consensus 348 DEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~ 427 (1156)
||||++||..++.+|++.|+++.+ ..++.++.++|+..-+.++||+|+||.+|++|+.|+.++++.. |.
T Consensus 179 DEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~--------p~-- 247 (539)
T COG1123 179 DEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN--------PQ-- 247 (539)
T ss_pred CCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc--------cC--
Confidence 999999999999999999999876 4567777899999999999999999999999999999988541 11
Q ss_pred ChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHH
Q 001108 428 GVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKA 507 (1156)
Q Consensus 428 ~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~ 507 (1156)
.||... +... .|.
T Consensus 248 -----------------------hpYT~~-----------------Ll~a--~p~------------------------- 260 (539)
T COG1123 248 -----------------------HPYTRG-----------------LLAA--VPR------------------------- 260 (539)
T ss_pred -----------------------CcccHH-----------------HHhh--CCC-------------------------
Confidence 011000 0000 000
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhh
Q 001108 508 NISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFY 587 (1156)
Q Consensus 508 ~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ 587 (1156)
....
T Consensus 261 --------------------------------------~~~~-------------------------------------- 264 (539)
T COG1123 261 --------------------------------------LGDE-------------------------------------- 264 (539)
T ss_pred --------------------------------------cccc--------------------------------------
Confidence 0000
Q ss_pred hhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Q 001108 588 KQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVA 667 (1156)
Q Consensus 588 ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA 667 (1156)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCccccccCCCccccHHHHHhhcCCccccc
Q 001108 668 NTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEY 747 (1156)
Q Consensus 668 ~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~ 747 (1156)
..
T Consensus 265 ------------------------------------------------------~~------------------------ 266 (539)
T COG1123 265 ------------------------------------------------------KI------------------------ 266 (539)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCCCCCCCccccccc
Q 001108 748 WYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQS 827 (1156)
Q Consensus 748 ~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1156)
. . .+..
T Consensus 267 -----------------------------------------------~-------------------~--~~~~------ 272 (539)
T COG1123 267 -----------------------------------------------I-------------------R--LPRR------ 272 (539)
T ss_pred -----------------------------------------------c-------------------c--cccc------
Confidence 0 0 0000
Q ss_pred ccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcH
Q 001108 828 SSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 907 (1156)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGK 907 (1156)
. ..+ ...-++++|++..|..++.+. . -..+...+++||||++++||++||+|+|||||
T Consensus 273 ----~---------------~~~-~~~ll~V~~l~k~y~~~~~~~-~-~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGK 330 (539)
T COG1123 273 ----G---------------PLR-AEPLLSVRNLSKRYGSRKGLF-V-RERGEVKAVDDVSFDLREGETLGLVGESGSGK 330 (539)
T ss_pred ----c---------------ccc-cCceeEeeeeeeeeccccccc-c-ccccceeeeeeeeeEecCCCEEEEECCCCCCH
Confidence 0 000 011245566655554432111 0 00134579999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCeEEEEEEEcCccC--C---hhcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHH
Q 001108 908 TTLMDVLAGRKTGGYITGNITISGYPK--K---QETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRK 980 (1156)
Q Consensus 908 TTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~ 980 (1156)
|||.++|+|+.. +..|.|.++|.+. . ....++.+-+++|++ .+.|.+||++.+.-........ ...+++
T Consensus 331 STlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~ 406 (539)
T COG1123 331 STLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERR 406 (539)
T ss_pred HHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHH
Confidence 999999999987 4689999999762 1 122345667777776 5779999999998765544322 245667
Q ss_pred HHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 001108 981 MFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1058 (1156)
Q Consensus 981 ~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~ 1058 (1156)
+++.++++.++|.+ +.++. +.+||||||||++|||||+.+|++|++|||||.||+..+..|.++|+++.++ |.
T Consensus 407 ~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 407 ARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred HHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 78999999999986 45555 3579999999999999999999999999999999999999999999999765 99
Q ss_pred EEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1059 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1059 tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|.|++|||++. +...|||+.+|.+ |++|..||.
T Consensus 482 t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 482 TYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred EEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCH
Confidence 99999999975 7789999999986 799999974
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=686.64 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=178.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
+.++|+||+++|+.. ...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 579999999999631 1359999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.+ ..+++.++||||++.+++. |++|||.... +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 754 4567889999999999875 9999996321 122 34578889988886543 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 5899999999985 4667999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 799999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=628.83 Aligned_cols=456 Identities=21% Similarity=0.304 Sum_probs=346.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++| + +|+|.++|.++..... ++.++||+|++.+++
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 499999999999999999999999999999999999986 5 8999999998765432 356999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.|+......+.. . ..+....++++++.+||++..+..++
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~-~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-- 142 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIM-D------------------------------YDAMYLRAQKLLAQLKLDINPATPVG-- 142 (506)
T ss_pred CCcHHHHhhhcccccccCCc-C------------------------------HHHHHHHHHHHHHHcCCCCCcccchh--
Confidence 99999999987532110000 0 00011245678999999877776554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++. . +++||.++|+..++.++||+|++|+
T Consensus 143 ---~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 143 ---NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVIR 217 (506)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEEE
Confidence 6999999999999999999999999999999999999999999998854 3 4456668889999999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 001108 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1156)
+|++++.|+.+++.. .+ ..+.
T Consensus 218 ~G~i~~~~~~~~~~~---------------~~-----------------------------~~~~--------------- 238 (506)
T PRK13549 218 DGRHIGTRPAAGMTE---------------DD-----------------------------IITM--------------- 238 (506)
T ss_pred CCEEeeecccccCCH---------------HH-----------------------------HHHH---------------
Confidence 999998886442200 00 0000
Q ss_pred CCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhH
Q 001108 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1156)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 559 (1156)
++ + ..
T Consensus 239 -------------------------------------------------------------~~--~--~~---------- 243 (506)
T PRK13549 239 -------------------------------------------------------------MV--G--RE---------- 243 (506)
T ss_pred -------------------------------------------------------------hh--C--cC----------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHH
Q 001108 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1156)
Q Consensus 560 ~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 639 (1156)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCC
Q 001108 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1156)
Q Consensus 640 ~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1156)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCC
Q 001108 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1156)
Q Consensus 720 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1156)
. . . .. + . .
T Consensus 244 ---~-~---~-------------------------------------------~~-~--~-------------------~ 251 (506)
T PRK13549 244 ---L-T---A-------------------------------------------LY-P--R-------------------E 251 (506)
T ss_pred ---c-c---c-------------------------------------------cc-c--c-------------------c
Confidence 0 0 0 00 0 0 0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccC
Q 001108 800 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLED 879 (1156)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 879 (1156)
. . . + ....++++|+++.++.. +
T Consensus 252 ---------------------------------------~-~-~------~-~~~~l~~~~l~~~~~~~----------~ 273 (506)
T PRK13549 252 ---------------------------------------P-H-T------I-GEVILEVRNLTAWDPVN----------P 273 (506)
T ss_pred ---------------------------------------c-c-C------C-CCceEEEecCccccccc----------c
Confidence 0 0 0 0 00125566776554210 1
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---CC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IH 952 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~ 952 (1156)
++.+|+||||+|++||++||+||||||||||+++|+|...+ +.+|+|.++|.++.. ...++.+||++|++ .+
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCC
Confidence 23589999999999999999999999999999999998641 258999999976532 12245689999985 46
Q ss_pred CCCCCHHHHHHHHHHhhCCC--CCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001108 953 SPFVTIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1029 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~lr~~~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~il 1029 (1156)
++.+||.||+.+........ ..+.+..++.++++++.+++. +..+..+ ..|||||||||+||+||+.+|+||
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~ll 427 (506)
T PRK13549 353 VPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKIL 427 (506)
T ss_pred cCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEE
Confidence 78899999998753211110 012233446688999999996 4666653 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1030 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1030 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
||||||+|||+.++..++++|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..
T Consensus 428 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 490 (506)
T PRK13549 428 ILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINH 490 (506)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccc
Confidence 999999999999999999999999888999999999987 57789999999986 6888888754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-66 Score=628.60 Aligned_cols=457 Identities=22% Similarity=0.308 Sum_probs=345.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+||++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 24699999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++...... .+.. ... + ..+....++.+++.+||.+..++.++
T Consensus 96 tv~e~l~~~~~~~~~--~~~~-~~~-------------~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~---- 144 (510)
T PRK09700 96 TVLENLYIGRHLTKK--VCGV-NII-------------D-----------WREMRVRAAMMLLRVGLKVDLDEKVA---- 144 (510)
T ss_pred cHHHHhhhccccccc--cccc-ccc-------------C-----------HHHHHHHHHHHHHHcCCCCCcccchh----
Confidence 999999875421000 0000 000 0 00112346778999999877776654
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++. . +++||.++|+..++.++||+|++|++|
T Consensus 145 -~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 145 -NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999864 3 445666888999999999999999999
Q ss_pred eEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 001108 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1156)
++++.|+++++.. .+ ..+.
T Consensus 222 ~i~~~g~~~~~~~---------------~~-----------------------------~~~~----------------- 240 (510)
T PRK09700 222 SSVCSGMVSDVSN---------------DD-----------------------------IVRL----------------- 240 (510)
T ss_pred EEeeecchhhCCH---------------HH-----------------------------HHHH-----------------
Confidence 9999887654210 00 0000
Q ss_pred CCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHH
Q 001108 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1156)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1156)
+. + .. ..
T Consensus 241 -----------------------------------------------------------~~--~--~~-~~--------- 247 (510)
T PRK09700 241 -----------------------------------------------------------MV--G--RE-LQ--------- 247 (510)
T ss_pred -----------------------------------------------------------hc--C--CC-cc---------
Confidence 00 0 00 00
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHH
Q 001108 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1156)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 641 (1156)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc
Q 001108 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1156)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1156)
..+
T Consensus 248 ------------------------------------------------------------------------~~~----- 250 (510)
T PRK09700 248 ------------------------------------------------------------------------NRF----- 250 (510)
T ss_pred ------------------------------------------------------------------------ccc-----
Confidence 000
Q ss_pred ccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001108 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1156)
Q Consensus 722 ~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1156)
. . ..+
T Consensus 251 ~----~----------------------------------------------~~~------------------------- 255 (510)
T PRK09700 251 N----A----------------------------------------------MKE------------------------- 255 (510)
T ss_pred c----c----------------------------------------------ccc-------------------------
Confidence 0 0 000
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 001108 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1156)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1156)
.. . .. + .+..++++|+++.+.
T Consensus 256 -------------~~----------------------~---~~-----~-~~~~l~~~~l~~~~~--------------- 276 (510)
T PRK09700 256 -------------NV----------------------S---NL-----A-HETVFEVRNVTSRDR--------------- 276 (510)
T ss_pred -------------cc----------------------c---cC-----C-CCcEEEEeCccccCC---------------
Confidence 00 0 00 0 001366677764321
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccC---CCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQN---DIHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~---~~~~~ 954 (1156)
.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|+ ..+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP 354 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcC
Confidence 27999999999999999999999999999999999875 468999999976532 1234568999998 45778
Q ss_pred CCCHHHHHHHHHHhh---CCC--C-CChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 955 FVTIYESLLFSAWLR---LSP--E-VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr---~~~--~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
.+||+||+.+....+ ... . ......++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~ 429 (510)
T PRK09700 355 NFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPE 429 (510)
T ss_pred CCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCC
Confidence 899999998753211 000 0 11223335678999999996 6666654 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||||||||+|||+.++..++++|++++++|.|||++|||+. .+.+.||++++|++ |++++.++.
T Consensus 430 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 430 VIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999999999999999999999999878999999999986 47789999999986 688887764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-66 Score=624.84 Aligned_cols=448 Identities=21% Similarity=0.320 Sum_probs=343.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++.+|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 4999999999999999999999999999999999999998 9999999988754321 35699999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+........... ..+....++++++.+||++..|..++
T Consensus 95 tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRID------------------------------WKKMYAEADKLLARLNLRFSSDKLVG---- 140 (501)
T ss_pred cHHHHhhhccccccccCccC------------------------------HHHHHHHHHHHHHHcCCCCCccCchh----
Confidence 99999998643210000000 00012245678999999887776554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.. . +++||.++|+..++.++||+|++|++|
T Consensus 141 -~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~G 217 (501)
T PRK10762 141 -ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRDG 217 (501)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 5999999999999999999999999999999999999999999998754 3 445666888999999999999999999
Q ss_pred eEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 001108 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1156)
+++..|+.+++.. .+..+.
T Consensus 218 ~i~~~~~~~~~~~--------------------------------------------~~~~~~----------------- 236 (501)
T PRK10762 218 QFIAEREVADLTE--------------------------------------------DSLIEM----------------- 236 (501)
T ss_pred EEEEecCcCcCCH--------------------------------------------HHHHHH-----------------
Confidence 9998775442100 000000
Q ss_pred CCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHH
Q 001108 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1156)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1156)
++ . ..
T Consensus 237 -----------------------------------------------------------~~--~--~~------------ 241 (501)
T PRK10762 237 -----------------------------------------------------------MV--G--RK------------ 241 (501)
T ss_pred -----------------------------------------------------------hc--C--CC------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHH
Q 001108 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1156)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 641 (1156)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc
Q 001108 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1156)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1156)
.
T Consensus 242 -------------------------------------------------------------------------------~ 242 (501)
T PRK10762 242 -------------------------------------------------------------------------------L 242 (501)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001108 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1156)
Q Consensus 722 ~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1156)
.. . .+ .
T Consensus 243 ~~-~-------------------------------------------------~~----------------------~-- 248 (501)
T PRK10762 243 ED-Q-------------------------------------------------YP----------------------R-- 248 (501)
T ss_pred cc-c-------------------------------------------------cc----------------------c--
Confidence 00 0 00 0
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 001108 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1156)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1156)
. . . +..+..++++|++.
T Consensus 249 --------------~-------------------~------~------~~~~~~l~~~~l~~------------------ 265 (501)
T PRK10762 249 --------------L-------------------D------K------APGEVRLKVDNLSG------------------ 265 (501)
T ss_pred --------------c-------------------c------c------CCCCcEEEEeCccc------------------
Confidence 0 0 0 00001245555541
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---CCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~ 954 (1156)
.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++ .+++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 25999999999999999999999999999999999876 468999999977532 12345699999996 4678
Q ss_pred CCCHHHHHHHHHHhhCC---CCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001108 955 FVTIYESLLFSAWLRLS---PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~---~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ill 1030 (1156)
.+||.||+.+....... .....++.++.++++++.+++. +..++.+ ..|||||||||+||+||+.+|+|||
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 89999999875321110 0012233345688999999995 5666653 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
|||||+|||+.++..+++.|+++.++|+|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 419 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 480 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTRE 480 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 99999999999999999999999878999999999987 47889999999986 6888888764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=635.04 Aligned_cols=487 Identities=21% Similarity=0.235 Sum_probs=352.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC----------CcC------c-cce
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----------EFV------P-QRT 227 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~----------~~~------~-~~~ 227 (1156)
.++|+||||++++|++++|+|||||||||||++|+|.++|+ +|+|.++|..+. ... . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 45999999999999999999999999999999999999988 999999986431 111 1 246
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHH
Q 001108 228 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1156)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1156)
+|||+|++ .+++.+||+||+.++.+.. +.. + .+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-R---------------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 99999987 5788899999999986532 110 0 011234677899
Q ss_pred HcCCcc---cccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 001108 305 VLGLDV---CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381 (1156)
Q Consensus 305 ~lgL~~---~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i 381 (1156)
.+||++ ..+. .+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++||.+
T Consensus 152 ~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 2343 445799999999999999999999999999999999999999999999986533 4556678
Q ss_pred ecChhhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHH
Q 001108 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEF 461 (1156)
Q Consensus 382 ~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 461 (1156)
+|+...+.++||+|++|++|++++.|+++++.. .|.+....+++
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~---------------------------- 269 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALL---------------------------- 269 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhh----------------------------
Confidence 999999999999999999999999998876521 00000000000
Q ss_pred HHHHHhchhhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Q 001108 462 AEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLF 541 (1156)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f 541 (1156)
.. . +
T Consensus 270 -~~-------------~--~------------------------------------------------------------ 273 (623)
T PRK10261 270 -AA-------------V--P------------------------------------------------------------ 273 (623)
T ss_pred -hc-------------c--C------------------------------------------------------------
Confidence 00 0 0
Q ss_pred hcccCCCcccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHH
Q 001108 542 LRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVF 621 (1156)
Q Consensus 542 ~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~ 621 (1156)
.... ..
T Consensus 274 ---~~~~--~~--------------------------------------------------------------------- 279 (623)
T PRK10261 274 ---QLGA--MK--------------------------------------------------------------------- 279 (623)
T ss_pred ---cccc--cc---------------------------------------------------------------------
Confidence 0000 00
Q ss_pred HhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhh
Q 001108 622 LSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWC 701 (1156)
Q Consensus 622 i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~i 701 (1156)
T Consensus 280 -------------------------------------------------------------------------------- 279 (623)
T PRK10261 280 -------------------------------------------------------------------------------- 279 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHhhcCCccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 001108 702 SPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781 (1156)
Q Consensus 702 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~ 781 (1156)
+.......+... . ..
T Consensus 280 ----------------~~~~~~~~~~~~---------~-----------------------------------~~----- 294 (623)
T PRK10261 280 ----------------GLDYPRRFPLIS---------L-----------------------------------EH----- 294 (623)
T ss_pred ----------------cccCCccccccc---------c-----------------------------------cc-----
Confidence 000000000000 0 00
Q ss_pred ceeeccccccccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEece
Q 001108 782 AVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEV 861 (1156)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 861 (1156)
. . .. .+.. . .. .. +.....++++|+
T Consensus 295 --------------~--~---------------~~-~~~~----------~------~~-~~------~~~~~~L~~~~l 319 (623)
T PRK10261 295 --------------P--A---------------KQ-EPPI----------E------QD-TV------VDGEPILQVRNL 319 (623)
T ss_pred --------------c--c---------------cc-Cccc----------c------cc-cc------cCCCceEEEeee
Confidence 0 0 00 0000 0 00 00 000114788999
Q ss_pred eeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-----
Q 001108 862 VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----- 936 (1156)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----- 936 (1156)
++.++..... ... ......+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++..
T Consensus 320 ~~~y~~~~~~-~~~-~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~ 395 (623)
T PRK10261 320 VTRFPLRSGL-LNR-VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGK 395 (623)
T ss_pred EEEEcCCCcc-ccc-cCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHH
Confidence 8887421000 000 0012469999999999999999999999999999999999876 468999999986532
Q ss_pred -hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 001108 937 -ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 937 -~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 1012 (1156)
..+++.++|++|++ .+++.+||.|++.+....+. ....++.++.+.++++.++|. ...++. +.+|||||
T Consensus 396 ~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGq 468 (623)
T PRK10261 396 LQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQ 468 (623)
T ss_pred HHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHH
Confidence 12345799999997 57888999999988654321 112334456788999999996 455655 35799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||+|||||+.+|+||||||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.||++++|++ |++++.|
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g 546 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIG 546 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 99999999999999999999999999999999999999999765 899999999987 47788999999986 6899998
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 547 ~~ 548 (623)
T PRK10261 547 PR 548 (623)
T ss_pred CH
Confidence 74
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-65 Score=621.28 Aligned_cols=217 Identities=22% Similarity=0.325 Sum_probs=174.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc-Ccc-
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 933 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~- 933 (1156)
++++|+++.++... .+++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISVD--------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccCC--------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 66778877763100 022469999999999999999999999999999999999875 468999996 532
Q ss_pred --CCh------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-----cccccc
Q 001108 934 --KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-----LRQSLV 1000 (1156)
Q Consensus 934 --~~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~~ 1000 (1156)
... ...++.+||++|++.+++.+||+||+.+...+. ...+..++.+.++++.++|.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999988889999999998754321 122333456788999999975 34444
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1079 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~ 1079 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.||+++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 3579999999999999999999999999999999999999999999999764 899999999987 4778899999
Q ss_pred EEecCcEEEEecCC
Q 001108 1080 LMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1080 ~l~~Gg~~~~~g~~ 1093 (1156)
+|++ |+++..|+.
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9986 688888763
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-65 Score=621.71 Aligned_cols=464 Identities=22% Similarity=0.285 Sum_probs=344.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCcCc-------cceEEEEcCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (1156)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 359999999999999999999999999999999999998610 128999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc--
Q 001108 236 N--HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-- 310 (1156)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 310 (1156)
. +++.+||+|++.+..... +.. + .+....++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR-R---------------------------------EAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHCCCCChH
Confidence 4 567789999988653221 100 0 011234677899999975
Q ss_pred -cccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHH
Q 001108 311 -CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (1156)
Q Consensus 311 -~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~ 389 (1156)
..+.. +..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++... +.+||.++|+...+.
T Consensus 148 ~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHH
Confidence 23444 45699999999999999999999999999999999999999999999976532 445666788989999
Q ss_pred hhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhch
Q 001108 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFH 469 (1156)
Q Consensus 390 ~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1156)
++||+|++|++|++++.|+++++... |.. + +
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~-------------------------~------------~---- 252 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH-------------------------P------------Y---- 252 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC-------------------------H------------H----
Confidence 99999999999999999987654210 000 0 0
Q ss_pred hhhhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 001108 470 VGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549 (1156)
Q Consensus 470 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~ 549 (1156)
. +. ++...
T Consensus 253 -----------------------------------~-----~~----------------------------~~~~~---- 260 (529)
T PRK15134 253 -----------------------------------T-----QK----------------------------LLNSE---- 260 (529)
T ss_pred -----------------------------------H-----HH----------------------------HHHhC----
Confidence 0 00 00000
Q ss_pred ccccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccc
Q 001108 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGY 629 (1156)
Q Consensus 550 ~~~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~ 629 (1156)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHH
Q 001108 630 DSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQN 709 (1156)
Q Consensus 630 ~~~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 709 (1156)
+
T Consensus 261 --------------------------------------------------------------~----------------- 261 (529)
T PRK15134 261 --------------------------------------------------------------P----------------- 261 (529)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred HHHHHhhcCCccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeecccc
Q 001108 710 AIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIE 789 (1156)
Q Consensus 710 al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~ 789 (1156)
.. .+.
T Consensus 262 -----------------~~----------------------------------------------~~~------------ 266 (529)
T PRK15134 262 -----------------SG----------------------------------------------DPV------------ 266 (529)
T ss_pred -----------------cc----------------------------------------------ccc------------
Confidence 00 000
Q ss_pred ccccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccc
Q 001108 790 SNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPE 869 (1156)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~ 869 (1156)
. + ... .+..++++|+++.++...
T Consensus 267 ---------~-------------------~-----------------------~~~------~~~~l~~~~l~~~~~~~~ 289 (529)
T PRK15134 267 ---------P-------------------L-----------------------PEP------ASPLLDVEQLQVAFPIRK 289 (529)
T ss_pred ---------c-------------------c-----------------------CCC------CCCcccccCcEEEeecCc
Confidence 0 0 000 000245666766653110
Q ss_pred hhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh------cccceE
Q 001108 870 EMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE------TFARIS 943 (1156)
Q Consensus 870 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~ 943 (1156)
.. .++ ..+.+.+|+||||+|++||++||+||||||||||+++|+|... .+|+|.++|.++... .+++.+
T Consensus 290 ~~-~~~-~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i 364 (529)
T PRK15134 290 GI-LKR-TVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRI 364 (529)
T ss_pred cc-ccc-ccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhce
Confidence 00 000 0012469999999999999999999999999999999999863 479999999765321 124568
Q ss_pred EEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHH
Q 001108 944 GYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAV 1020 (1156)
Q Consensus 944 gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~ 1020 (1156)
||++|++ .+++.+||.||+.++...+.. ..+..+.++.+.++++.++|. +..+.. +..|||||||||+||+
T Consensus 365 ~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~ 438 (529)
T PRK15134 365 QVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIAR 438 (529)
T ss_pred EEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHH
Confidence 9999997 477889999999886543211 122334456788999999997 455655 3579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1021 aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||++++|++ |+++..|+.
T Consensus 439 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999865 899999999986 47788999999986 688888864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=619.16 Aligned_cols=452 Identities=21% Similarity=0.287 Sum_probs=342.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988754432 24699999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+.... . +....++++++.+||++..+..++
T Consensus 102 tv~e~l~~~~~~~------~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 139 (510)
T PRK15439 102 SVKENILFGLPKR------Q--------------------------------ASMQKMKQLLAALGCQLDLDSSAG---- 139 (510)
T ss_pred cHHHHhhcccccc------h--------------------------------HHHHHHHHHHHHcCCCccccCChh----
Confidence 9999998853110 0 001235668899999877776554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++++. . +.+||.++|+..++.++||+|++|++|
T Consensus 140 -~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 140 -SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999998764 3 455666888999999999999999999
Q ss_pred eEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 001108 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1156)
++++.|+++++... +.+ +.+..
T Consensus 217 ~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~-------------- 238 (510)
T PRK15439 217 TIALSGKTADLSTD---------------DII-----------------------------QAITP-------------- 238 (510)
T ss_pred EEEEecChHHcCHH---------------HHH-----------------------------HHHhC--------------
Confidence 99999987653210 000 00000
Q ss_pred CCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHH
Q 001108 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1156)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1156)
+ ..... ....
T Consensus 239 ------------------------------------~--------------------------~~~~~-~~~~------- 248 (510)
T PRK15439 239 ------------------------------------A--------------------------AREKS-LSAS------- 248 (510)
T ss_pred ------------------------------------c--------------------------ccccc-cccc-------
Confidence 0 00000 0000
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHH
Q 001108 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1156)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 641 (1156)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc
Q 001108 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1156)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1156)
.. .
T Consensus 249 --------------------------------------------------~~---------------------------~ 251 (510)
T PRK15439 249 --------------------------------------------------QK---------------------------L 251 (510)
T ss_pred --------------------------------------------------cc---------------------------c
Confidence 00 0
Q ss_pred ccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001108 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1156)
Q Consensus 722 ~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1156)
. ..+ + .
T Consensus 252 ~-----------------~~~---------------------------------~----------------------~-- 257 (510)
T PRK15439 252 W-----------------LEL---------------------------------P----------------------G-- 257 (510)
T ss_pred c-----------------ccc---------------------------------c----------------------c--
Confidence 0 000 0 0
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 001108 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1156)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1156)
. . .. . +..+..++++|++.
T Consensus 258 --------------~-------------------~--~~--~------~~~~~~l~~~~l~~------------------ 276 (510)
T PRK15439 258 --------------N-------------------R--RQ--Q------AAGAPVLTVEDLTG------------------ 276 (510)
T ss_pred --------------c-------------------c--cc--c------CCCCceEEEeCCCC------------------
Confidence 0 0 00 0 00011255666651
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh----cccceEEEeccCC---CCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~ 954 (1156)
.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++ .+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 14899999999999999999999999999999999865 4589999999765321 1234689999984 4778
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDE 1033 (1156)
.+|+.|++.+....+..........++.++++++.+++. +..++.+ ..|||||||||+||+||+.+|+||||||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 899999986431111110011122345678999999996 5666653 5699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
||+|||+.++..+++.|++++++|.|||++||+++ ++.+.||++++|++ |++++.|..+
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999999999888999999999997 57889999999985 6888888654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=615.70 Aligned_cols=456 Identities=19% Similarity=0.275 Sum_probs=342.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.+++
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 499999999999999999999999999999999999886 5 8999999998765332 356999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc-cccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA-DTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~ 318 (1156)
.+||+||+.|+......+.... ..+....++.+++.+||.+.. +..+
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-- 139 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMA------------------------------YNAMYLRAKNLLRELQLDADNVTRPV-- 139 (500)
T ss_pred CCcHHHHHHhhccccccccccC------------------------------HHHHHHHHHHHHHHcCCCCCcccCch--
Confidence 9999999988643210000000 000122456789999997654 3334
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++++. . +++||.++|+..++.++||+|++|
T Consensus 140 ---~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 140 ---GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred ---hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998864 3 455666889999999999999999
Q ss_pred cCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhh
Q 001108 399 SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDEL 478 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 478 (1156)
++|++++.|+.+++.. ....+
T Consensus 215 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~--------------- 235 (500)
T TIGR02633 215 RDGQHVATKDMSTMSE--------------------------------------------DDIIT--------------- 235 (500)
T ss_pred eCCeEeeecCcccCCH--------------------------------------------HHHHH---------------
Confidence 9999987664321000 00000
Q ss_pred cCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchh
Q 001108 479 RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFA 558 (1156)
Q Consensus 479 ~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~ 558 (1156)
.+. + ..
T Consensus 236 -------------------------------------------------------------~~~--~--~~--------- 241 (500)
T TIGR02633 236 -------------------------------------------------------------MMV--G--RE--------- 241 (500)
T ss_pred -------------------------------------------------------------HHh--C--cc---------
Confidence 000 0 00
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHH
Q 001108 559 GATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFK 638 (1156)
Q Consensus 559 g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~ 638 (1156)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcC
Q 001108 639 QYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLG 718 (1156)
Q Consensus 639 ~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~ 718 (1156)
.+.
T Consensus 242 ----------------------------------------------------~~~------------------------- 244 (500)
T TIGR02633 242 ----------------------------------------------------ITS------------------------- 244 (500)
T ss_pred ----------------------------------------------------ccc-------------------------
Confidence 000
Q ss_pred CccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccC
Q 001108 719 HSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIG 798 (1156)
Q Consensus 719 ~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1156)
. .+
T Consensus 245 -----------------------~--------------------------------~~---------------------- 247 (500)
T TIGR02633 245 -----------------------L--------------------------------YP---------------------- 247 (500)
T ss_pred -----------------------c--------------------------------cc----------------------
Confidence 0 00
Q ss_pred CcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhccccc
Q 001108 799 GNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLE 878 (1156)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~ 878 (1156)
.. + . .. .+..++++|+++.+...
T Consensus 248 ----------------~~--~-------------------~--~~--------~~~~l~~~~l~~~~~~~---------- 270 (500)
T TIGR02633 248 ----------------HE--P-------------------H--EI--------GDVILEARNLTCWDVIN---------- 270 (500)
T ss_pred ----------------cc--c-------------------c--CC--------CCceEEEeCCccccccc----------
Confidence 00 0 0 00 00125666776544200
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---C
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---I 951 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~ 951 (1156)
+++.+|+||||+|++||++||+|||||||||||++|+|...+ +.+|+|.++|.++.. ...++.+||++|+. .
T Consensus 271 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (500)
T TIGR02633 271 PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHG 349 (500)
T ss_pred ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCC
Confidence 123589999999999999999999999999999999998652 247999999977532 12345689999995 5
Q ss_pred CCCCCCHHHHHHHHHH--hhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001108 952 HSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~--lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~i 1028 (1156)
+++.+||+||+.++.. ............++.++++++.+++.+ ..++.+ ..|||||||||+||++|+.+|++
T Consensus 350 l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~l 424 (500)
T TIGR02633 350 IVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRV 424 (500)
T ss_pred cCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCE
Confidence 7888999999987542 111001122334466889999999964 456553 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1029 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|++ |+++..++.
T Consensus 425 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 425 LILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred EEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 9999999999999999999999999888999999999987 57889999999986 677777654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=664.88 Aligned_cols=210 Identities=19% Similarity=0.241 Sum_probs=177.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
+.++|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 57999999999962 12469999999999999999999999999999999999864 47999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.. ..+++.++||||++.+++. |++|||.... . ..++.++++++.++|.+.. |..++.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~----~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q----WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C----CCHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 754 4567889999999999874 9999995321 1 1245688999999886543 444444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999875 4799999999985 4567999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 699999874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=613.11 Aligned_cols=450 Identities=22% Similarity=0.310 Sum_probs=341.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 4999999999999999999999999999999999999998 999999998875332 135799999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++......+.. . ..+....++.+++.+||++..+..+
T Consensus 95 tv~~~l~~~~~~~~~~~~----~---------------------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 138 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIV----N---------------------------RRLLNYEAREQLEHLGVDIDPDTPL----- 138 (501)
T ss_pred CHHHHHHhcccccccCCC----C---------------------------HHHHHHHHHHHHHHcCCCCCcCCch-----
Confidence 999999986421100000 0 0001224567889999986666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++. . +++||.++|+..++.++||+|++|++|
T Consensus 139 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 139 KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 3 455666888889999999999999999
Q ss_pred eEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 001108 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1156)
+++..++..+. .+.++..+.
T Consensus 217 ~i~~~~~~~~~-------------------------------------------~~~~~~~~~----------------- 236 (501)
T PRK11288 217 RYVATFDDMAQ-------------------------------------------VDRDQLVQA----------------- 236 (501)
T ss_pred EEEeecCcccc-------------------------------------------CCHHHHHHH-----------------
Confidence 99865421100 000000000
Q ss_pred CCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhHHH
Q 001108 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1156)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~l 561 (1156)
+. . ..
T Consensus 237 -----------------------------------------------------------~~--~--~~------------ 241 (501)
T PRK11288 237 -----------------------------------------------------------MV--G--RE------------ 241 (501)
T ss_pred -----------------------------------------------------------hc--C--CC------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHHHH
Q 001108 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1156)
Q Consensus 562 ff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 641 (1156)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCCcc
Q 001108 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1156)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1156)
.
T Consensus 242 -------------------------------------------------------------------------------~ 242 (501)
T PRK11288 242 -------------------------------------------------------------------------------I 242 (501)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001108 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1156)
Q Consensus 722 ~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1156)
. .. ..
T Consensus 243 ~-----------------------~~---------------------------~~------------------------- 247 (501)
T PRK11288 243 G-----------------------DI---------------------------YG------------------------- 247 (501)
T ss_pred c-----------------------cc---------------------------cc-------------------------
Confidence 0 00 00
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 001108 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1156)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1156)
. .+ . +..+..++++|+++.
T Consensus 248 --------------~-~~-----------------------~------~~~~~~l~~~~~~~~----------------- 266 (501)
T PRK11288 248 --------------Y-RP-----------------------R------PLGEVRLRLDGLKGP----------------- 266 (501)
T ss_pred --------------c-cc-----------------------c------CCCCcEEEEeccccC-----------------
Confidence 0 00 0 000012455666421
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---CCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~ 954 (1156)
.+++|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 37999999999999999999999999999999999875 568999999976532 12345689999986 4788
Q ss_pred CCCHHHHHHHHHHhhCCC-C--CChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001108 955 FVTIYESLLFSAWLRLSP-E--VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~-~--~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ill 1030 (1156)
.+|+.||+.+........ . ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+|||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEE
Confidence 899999998753221100 0 01223345678999999994 5666664 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCC
Q 001108 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1095 (1156)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~~ 1095 (1156)
|||||+|||+.++..++++|++++++|.|||++|||++ ++.+.||++++|++ |++++.|..+.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 99999999999999999999999888999999999987 47889999999985 68899987653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-63 Score=659.66 Aligned_cols=211 Identities=23% Similarity=0.259 Sum_probs=178.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
+.++|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 57999999999852 12359999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.. ..+++.+|||||++.++.. |++|||... .+.+ ++.++++++.+++.+.. |+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4577889999999998864 999999532 1222 35688999999887643 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1004 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
..+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 467999999999999999996 89999999999999999999999999875 4799999999975 567899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 6 799999974
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=602.67 Aligned_cols=449 Identities=18% Similarity=0.288 Sum_probs=339.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1156)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35999999999999999999999999999999999999998 9999999998754321 3569999999888999
Q ss_pred CCHHHHHHHHhh-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.++.. ..+.... . .+....++.+++.+||.+..++.++
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~-----~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 133 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVD-----Q---------------------------DKMYRDTKAIFDELDIDIDPRAKVA-- 133 (491)
T ss_pred CCHHHHhhcccccccccccC-----H---------------------------HHHHHHHHHHHHHcCCCCCccCchh--
Confidence 999999987642 1110000 0 0011245678899999876666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.+..++.+.|++++. . +.+||.++|+..++.++||+|++|+
T Consensus 134 ---~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 134 ---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-R-GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999998754 3 4455667889999999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 001108 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1156)
+|++++.|+++++.. .+..+.
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 229 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAM--------------- 229 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHH---------------
Confidence 999998876542100 000000
Q ss_pred CCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhH
Q 001108 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1156)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 559 (1156)
+. + ..
T Consensus 230 -------------------------------------------------------------~~--~--~~---------- 234 (491)
T PRK10982 230 -------------------------------------------------------------MV--G--RS---------- 234 (491)
T ss_pred -------------------------------------------------------------Hh--C--CC----------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHH
Q 001108 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1156)
Q Consensus 560 ~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 639 (1156)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCC
Q 001108 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1156)
Q Consensus 640 ~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1156)
.
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCC
Q 001108 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1156)
Q Consensus 720 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1156)
.. .+ +
T Consensus 236 --~~------------------------------------------------~~--~----------------------- 240 (491)
T PRK10982 236 --TQ------------------------------------------------RF--P----------------------- 240 (491)
T ss_pred --cc------------------------------------------------cc--c-----------------------
Confidence 00 00 0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccC
Q 001108 800 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLED 879 (1156)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 879 (1156)
.. . . . + .+..++++|+++..
T Consensus 241 ---------------~~----------------------~-~-~------~-~~~~i~~~~l~~~~-------------- 260 (491)
T PRK10982 241 ---------------DK----------------------E-N-K------P-GEVILEVRNLTSLR-------------- 260 (491)
T ss_pred ---------------cc----------------------c-C-C------C-CCcEEEEeCccccc--------------
Confidence 00 0 0 0 0 01136677776641
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh----cccceEEEeccCC---CC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IH 952 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~ 952 (1156)
+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.+||++|++ .+
T Consensus 261 -~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~ 337 (491)
T PRK10982 261 -QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGI 337 (491)
T ss_pred -CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCc
Confidence 138999999999999999999999999999999999876 4689999999765421 2245589999985 35
Q ss_pred CCCCCHHHHHHHHHH--hhCCCC-CChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001108 953 SPFVTIYESLLFSAW--LRLSPE-VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~--lr~~~~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~i 1028 (1156)
++.+|+.+|..+... ...... ......++.+.++++.+++. +..+.. +.+|||||||||+||++|+.+|+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~i 412 (491)
T PRK10982 338 YAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEI 412 (491)
T ss_pred ccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCE
Confidence 778888877433211 000001 12223345678899999985 445555 357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1029 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |+++..++.
T Consensus 413 llLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~ 475 (491)
T PRK10982 413 LMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT 475 (491)
T ss_pred EEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence 9999999999999999999999999888999999999987 47789999999986 677776654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=594.31 Aligned_cols=214 Identities=19% Similarity=0.302 Sum_probs=165.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|.... ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 378889988773 24589999999999999999999999999999999996431 1479999999764
Q ss_pred Ch----hcccceEEEeccCCCCCC--CCCHHHHHHHHHHh--hCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 001108 935 KQ----ETFARISGYCEQNDIHSP--FVTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~----~~~~~~~gyv~q~~~~~~--~~Tv~e~l~~~~~l--r~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~ 1005 (1156)
.. ...++.+||++|++.++. ..|+++++.+.... ....... ...++.++++++.++|.+ ..+..+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 123456999999876543 24676666543210 0111111 223456889999999986 666653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHH-hcCeEEEEec
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKR 1083 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~-~~d~v~~l~~ 1083 (1156)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++| .|||++||+++ ++.+ .+|++++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 5699999999999999999999999999999999999999999999998776 46999999986 3655 5899999987
Q ss_pred CcEEEEe
Q 001108 1084 GGQEIYV 1090 (1156)
Q Consensus 1084 Gg~~~~~ 1090 (1156)
| ++++.
T Consensus 479 G-~i~~~ 484 (490)
T PRK10938 479 G-DIYRY 484 (490)
T ss_pred C-ceEEe
Confidence 5 55543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=583.91 Aligned_cols=201 Identities=20% Similarity=0.288 Sum_probs=164.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 488999988773 2469999999999999999999999999999999999875 4689999853 2
Q ss_pred ChhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 1012 (1156)
..+||++|++ .+++.+||+|++.+....... ... ...+.++++.+++.+ ..++. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 677889999999886432211 111 123457899999964 44554 35799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Eec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~g 1091 (1156)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. | |||++||+++ .+...||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999987 4778899999998767766 455
Q ss_pred C
Q 001108 1092 P 1092 (1156)
Q Consensus 1092 ~ 1092 (1156)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-60 Score=515.36 Aligned_cols=470 Identities=25% Similarity=0.336 Sum_probs=366.1
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCcCcc-------ceEEEEcC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVPQ-------RTAAYISQ 233 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~nG~~~~~~~~~-------~~~~yv~Q 233 (1156)
....++++|||.+++||.+||+|.||||||-..+.++|+++. ....+|+|.|+|.++-....+ ..|+.|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 345699999999999999999999999999999999999876 345689999999987544321 46999999
Q ss_pred CC--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
++ .+.|-.|+..-|.-..+++.... ...++.++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~---------------------------------~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLS---------------------------------RAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhccc---------------------------------HHHHHHHHHHHHHHcCCCch
Confidence 96 56777788877776665542111 11223456778889999876
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
...+ +.++.+|||||||||.||.||+.+|++||-||||++||.....+|.+.|+++-. ..+..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~-~~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA-ELGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH-HhCcEEEEEeccHHHHHHh
Confidence 5433 467889999999999999999999999999999999999999999999999865 4566777799999999999
Q ss_pred cCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhh
Q 001108 392 FDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVG 471 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1156)
+|+|+||.+|++|++|+.+.+.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999998776522 1111 000
Q ss_pred hhhHHhhcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCccc
Q 001108 472 QKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551 (1156)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~ 551 (1156)
|.++ +
T Consensus 255 ---------------------------------------r~Ll------------------------------~------ 259 (534)
T COG4172 255 ---------------------------------------RKLL------------------------------A------ 259 (534)
T ss_pred ---------------------------------------HHHH------------------------------h------
Confidence 0000 0
Q ss_pred ccccchhHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccC
Q 001108 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631 (1156)
Q Consensus 552 ~~~~~~~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 631 (1156)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHH
Q 001108 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 711 (1156)
Q Consensus 632 ~~~~ff~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 711 (1156)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeecccccc
Q 001108 712 VANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791 (1156)
Q Consensus 712 ~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.| |
T Consensus 260 --ae------------------------------------------------------------P--------------- 262 (534)
T COG4172 260 --AE------------------------------------------------------------P--------------- 262 (534)
T ss_pred --cC------------------------------------------------------------C---------------
Confidence 00 0
Q ss_pred ccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchh
Q 001108 792 EQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEM 871 (1156)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~ 871 (1156)
. + .+ ....+..|..++.+|+...++.++.+
T Consensus 263 -----~-g------------------~~--------------------------~p~~~~~~~ll~~~~v~v~f~i~~g~ 292 (534)
T COG4172 263 -----S-G------------------DP--------------------------PPLPEDAPVLLEVEDLRVWFPIKGGF 292 (534)
T ss_pred -----C-C------------------CC--------------------------CCCCCCCCceEEecceEEEEecCCcc
Confidence 0 0 00 00000112245556665555544332
Q ss_pred hhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh------hcccceEEE
Q 001108 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETFARISGY 945 (1156)
Q Consensus 872 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy 945 (1156)
-.. ......++++||++.++||.+||+|.||||||||=.+|.++.. .+|.|.++|.++.. ...++.+-.
T Consensus 293 ~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQv 367 (534)
T COG4172 293 LRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQV 367 (534)
T ss_pred ccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceE
Confidence 111 1123569999999999999999999999999999999999875 35999999988753 235677899
Q ss_pred eccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHH
Q 001108 946 CEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVEL 1022 (1156)
Q Consensus 946 v~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL 1022 (1156)
|+|||. +.|.+||.+-+.-+..... +..+..++++++.++|+.+||++- +++. +.++|||||||++|||||
T Consensus 368 VFQDPygSLsPRmtV~qII~EGL~vh~-~~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAl 441 (534)
T COG4172 368 VFQDPYGSLSPRMTVGQIIEEGLRVHE-PKLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARAL 441 (534)
T ss_pred EEeCCCCCCCcccCHHHHhhhhhhhcC-CCCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHH
Confidence 999984 6799999999887766654 356778899999999999999874 3443 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1023 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+-+|++++||||||+||..-+..|.++|+++.+ .|.+-++++||+.. +-.+||++++|++ |++|..|+.
T Consensus 442 iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 442 ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC-CEEeeeCCH
Confidence 999999999999999999999999999999964 49999999999874 7778999999986 799999985
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-60 Score=576.77 Aligned_cols=198 Identities=17% Similarity=0.252 Sum_probs=164.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 588999998874 2458999999999999999999999999999999999865 46899999873
Q ss_pred ChhcccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHH
Q 001108 935 KQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 1011 (1156)
+.+||++|++. +.+.+|++|++.+.. .. . ..++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 35899999864 556799999986421 11 1 1134578899999984 555655 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Ee
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~ 1090 (1156)
||||++||++|+.+|+||||||||+|||+.++..+++.|+++ +.|||++||+++ .+...||++++|++| +++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g-~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPD-GVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECC-eEEEcC
Confidence 999999999999999999999999999999999999999886 459999999987 477889999999875 555 77
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=572.34 Aligned_cols=201 Identities=18% Similarity=0.273 Sum_probs=164.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 478999988773 2469999999999999999999999999999999999865 4689999854 2
Q ss_pred ChhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGq 1012 (1156)
..+||++|++ .+++.+||.|++.+...... .... +..+.++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 47788999999988643221 1111 123557899999864 44554 35699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Eec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~g 1091 (1156)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. .|||++||+++ .+...||++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999987 4778899999998777766 445
Q ss_pred C
Q 001108 1092 P 1092 (1156)
Q Consensus 1092 ~ 1092 (1156)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-57 Score=557.58 Aligned_cols=197 Identities=22% Similarity=0.344 Sum_probs=160.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++|+++.++ ++.+|+|+||+|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 478899988873 3569999999999999999999999999999999999875 46899998641
Q ss_pred ChhcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHH
Q 001108 935 KQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgG 1011 (1156)
..+||++|+. .+.+..|+.+++.- .. . ......+.++++.+++.+ ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~--~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA--P----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC--c----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 11 1 122345788999999863 455553 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Ee
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~ 1090 (1156)
|||||+||++|+.+|+||||||||+|||+.+...+.++|+++ . .|||++|||+. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999987 47788999999986 5665 77
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=557.79 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=164.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++|+++.++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +..|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478899988773 3469999999999999999999999999999999999865 46899988 4322
Q ss_pred ChhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 1012 (1156)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788899999998753211 011 1123567888888885 3455543 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-cCcEEEEec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-RGGQEIYVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-~Gg~~~~~g 1091 (1156)
||||+||++|+.+|++|||||||+|||+.+...+.++|+++ +.|||++|||+. .+...||++++|. +|.-..|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999986 4778899999997 565556666
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-57 Score=550.99 Aligned_cols=211 Identities=20% Similarity=0.229 Sum_probs=171.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|... +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 477888887663 1 24899999999999999999999999999999999876 468999885
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
..+||++|+..+.+.+||+|++.+..... .. ...++++++.++|.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 14899999988888899999998753211 11 124678999999988777764 569999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+||++|+.+|+||||||||+|||+.++..++++|++++++ |+|||+++||+. .+...+|++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 4778899999996 3 66766663
Q ss_pred CCc---chhHHHHHHhC
Q 001108 1094 GRH---SCHLISYFEAI 1107 (1156)
Q Consensus 1094 ~~~---~~~~~~~f~~~ 1107 (1156)
... ...+-.|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 211 12334455555
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=509.23 Aligned_cols=447 Identities=23% Similarity=0.373 Sum_probs=347.6
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1156)
..++|+||||.+++||+++|+|.||||||||+|+|+|.++|+ +|+|.+||.+..-..++ .-|+.|.|+..++|
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 356999999999999999999999999999999999999999 99999999988655553 46899999999999
Q ss_pred CCCHHHHHHHHhhhcCC-CchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 240 EMTVRETLAFSARCQGV-GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
++||.|||.++...... +- + ...+.+..+..+|+.+|++...++.|++
T Consensus 97 ~LsVaeNifLgre~~~~~g~----i---------------------------d~~~m~~~A~~~l~~lg~~~~~~~~v~~ 145 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGL----I---------------------------DRKAMRRRARELLARLGLDIDPDTLVGD 145 (500)
T ss_pred CccHHHHhhcccccccCCCc----c---------------------------CHHHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 99999999887643321 10 0 0112234567789999997557888875
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
||+||||-|.||||+..+++|++|||||++|+...+..+++.++++. ..+..||.|+|...|++++||+|.||
T Consensus 146 -----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk--~~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK--AQGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999975 45777888999999999999999999
Q ss_pred cCCeEEEEcCh-hHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHh
Q 001108 399 SDGQIVYQGPR-ELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477 (1156)
Q Consensus 399 ~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1156)
.||+++..++. .+. +.+++.
T Consensus 219 RDG~~v~~~~~~~~~--------------------------------------------~~~~lv--------------- 239 (500)
T COG1129 219 RDGRVVGTRPTAAET--------------------------------------------SEDELV--------------- 239 (500)
T ss_pred eCCEEeeecccccCC--------------------------------------------CHHHHH---------------
Confidence 99999876652 211 000000
Q ss_pred hcCCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccch
Q 001108 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (1156)
Q Consensus 478 l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~ 557 (1156)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHH
Q 001108 558 AGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637 (1156)
Q Consensus 558 ~g~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff 637 (1156)
-.|+|
T Consensus 240 ------------------------------------------------------------------~~MvG--------- 244 (500)
T COG1129 240 ------------------------------------------------------------------RLMVG--------- 244 (500)
T ss_pred ------------------------------------------------------------------HHhhC---------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhc
Q 001108 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717 (1156)
Q Consensus 638 ~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 717 (1156)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeecccccccccccc
Q 001108 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRI 797 (1156)
Q Consensus 718 ~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1156)
..... .| + .
T Consensus 245 -r~~~~------------------------------------------------~~--~--~------------------ 253 (500)
T COG1129 245 -RELED------------------------------------------------LF--P--E------------------ 253 (500)
T ss_pred -cchhh------------------------------------------------hc--c--c------------------
Confidence 00000 00 0 0
Q ss_pred CCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccc
Q 001108 798 GGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVL 877 (1156)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~ 877 (1156)
. ... ...+..+++++++..
T Consensus 254 -----------------------------------------~-~~~------~~~~~~l~v~~l~~~------------- 272 (500)
T COG1129 254 -----------------------------------------P-PEE------GIGEPVLEVRNLSGG------------- 272 (500)
T ss_pred -----------------------------------------c-ccc------CCCCcEEEEecCCCC-------------
Confidence 0 000 000112334443311
Q ss_pred cCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCC---
Q 001108 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND--- 950 (1156)
Q Consensus 878 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~--- 950 (1156)
..++||||++++||++||.|-=|||+|-|+++|.|... ...|+|.++|.+... ...+.-++|||.|.
T Consensus 273 ----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~ 346 (500)
T COG1129 273 ----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346 (500)
T ss_pred ----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccC
Confidence 14799999999999999999999999999999999654 458999999987643 23455799999874
Q ss_pred CCCCCCCHHHHHHHHHHhhCCC--CCChHHHHHHHHHHHHHcCCCcccc-cccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 951 IHSPFVTIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 951 ~~~~~~Tv~e~l~~~~~lr~~~--~~~~~~~~~~v~~~l~~l~l~~~~~-~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
.++..++|++|+.++...+... -.+....++.+++..+.+++....- .. +..||||++|||.|||.|..+|+
T Consensus 347 Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~ 421 (500)
T COG1129 347 GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPK 421 (500)
T ss_pred cCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCC
Confidence 4678899999998883323221 2455556677889999998864321 22 46799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||||||.|+|..++..|.++|++++++|++||++|-++. |+...||||++|.+ |+++-.
T Consensus 422 vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e 482 (500)
T COG1129 422 VLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGE 482 (500)
T ss_pred EEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEE
Confidence 99999999999999999999999999999999999999986 79999999999996 566653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=536.83 Aligned_cols=199 Identities=19% Similarity=0.278 Sum_probs=157.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+ +++.+|+||||+|++|+++||+|||||||||||++|+|... +..|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 488999998873 12358999999999999999999999999999999999876 46799988652
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqr 1013 (1156)
..+||++|+.. +.+++.++..+...... .... ++.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~-~~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCF-PGVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhc-CCCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999752 34566666433211111 1111 245778999999974 44544 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~g~ 1092 (1156)
|||+||++|+.+|++|||||||+|||+.+...+++.|++. . .|||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 3 49999999987 47788999999986 5666 6665
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=506.81 Aligned_cols=220 Identities=28% Similarity=0.331 Sum_probs=172.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
+++|+|+|+.+.+|+.++|+|+|||||||||++|+|...|+ +|+|...+. -+++|++|+....+..||.
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKTVL 84 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCccHH
Confidence 45999999999999999999999999999999999999998 999988652 3699999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChH---HHHHH-HhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID---VYMKA-IATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~-~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+.+.-+... .++...+..... ...++++.. .+... ...++.+.+.+++.++..||++.. ++.++
T Consensus 85 ~~v~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~--- 152 (530)
T COG0488 85 DYVIEGFGE-----LRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS--- 152 (530)
T ss_pred HHHHhhhHH-----HHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh---
Confidence 999866421 122222221111 111222111 11111 122345566788899999999876 66665
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
.||||||.||+||++|+.+|++|+|||||++||..+..++-+.|++ ..+ ++|.++|++..+-+.|++|+-++.
T Consensus 153 --~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 153 --SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred --hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 5999999999999999999999999999999999999999999985 234 566689999999999999999999
Q ss_pred CeE-EEEcChhHHHH
Q 001108 401 GQI-VYQGPRELVLE 414 (1156)
Q Consensus 401 G~i-v~~G~~~~~~~ 414 (1156)
|++ .|.|.++...+
T Consensus 226 g~l~~y~Gny~~~~~ 240 (530)
T COG0488 226 GKLTPYKGNYSSYLE 240 (530)
T ss_pred CceeEecCCHHHHHH
Confidence 988 67787765543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=460.94 Aligned_cols=457 Identities=22% Similarity=0.317 Sum_probs=354.0
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1156)
...+++|||+.+++||+.||+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ ..||.|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 456999999999999999999999999999999999999999 99999999998665553 46899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
++||.|||..+..-... .+. ...+...+++.+.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~~------------------------------~~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GLI------------------------------DRRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-ccc------------------------------CHHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999987632100 000 0011234567888999999999988875
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
||=||||||.|-++|+.+|++|||||||+-|-|....++++.|++++. . +.+||.|+|-..|+.+.||++-||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~-G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-E-GKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999875 4 4555668999999999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhcChhhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 001108 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1156)
.|+++-.-++. . + .+.+++++.
T Consensus 215 ~Gkvvgt~~~~----------------~------------------------~---~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDPV----------------A------------------------E---TTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecCC----------------C------------------------C---CCHHHHHHH---------------
Confidence 99986432110 0 0 000000000
Q ss_pred CCCCCcccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchhH
Q 001108 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1156)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g 559 (1156)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhhhhhhcccccChhhHHHHHHHHhhcHHHHHHHHHHHHhhhhccccCchhHHHHH
Q 001108 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1156)
Q Consensus 560 ~lff~~~~~~~~~~~~l~~~~~~~~vf~ker~~~~y~~~~y~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 639 (1156)
|+|
T Consensus 237 ------------------------------------------------------------------MvG----------- 239 (501)
T COG3845 237 ------------------------------------------------------------------MVG----------- 239 (501)
T ss_pred ------------------------------------------------------------------hcC-----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhcccCcCchhHHHHHHHhhcHHHHHHHHHHHHhhcCC
Q 001108 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1156)
Q Consensus 640 ~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1156)
.
T Consensus 240 -------------------------------------------------------------------------------~ 240 (501)
T COG3845 240 -------------------------------------------------------------------------------R 240 (501)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred ccccccCCCccccHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCC
Q 001108 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1156)
Q Consensus 720 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1156)
. +.. +
T Consensus 241 ~---------------v~~-------------------------------------~----------------------- 245 (501)
T COG3845 241 E---------------VVL-------------------------------------R----------------------- 245 (501)
T ss_pred c---------------ccc-------------------------------------c-----------------------
Confidence 0 000 0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCCCCCCccCCCCceeEEeceeeEEeccchhhhcccccC
Q 001108 800 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLED 879 (1156)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 879 (1156)
. . . .... | .+..++++|++..-+.
T Consensus 246 ----------------~-------------------~--~-~~~~-----p-g~~vL~V~~L~v~~~~------------ 269 (501)
T COG3845 246 ----------------V-------------------V--K-PPST-----P-GEVVLEVEDLSVKDRR------------ 269 (501)
T ss_pred ----------------c-------------------c--c-CCCC-----C-CCeEEEEeeeEeecCC------------
Confidence 0 0 0 0000 0 0124666777644321
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC----Chh-cccceEEEeccCCC---
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK----KQE-TFARISGYCEQNDI--- 951 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~----~~~-~~~~~~gyv~q~~~--- 951 (1156)
....+++|||+|++||++||.|..|-|-+.|+.+|+|..+ +..|+|.++|.+. ... ..+.-+||||.+..
T Consensus 270 ~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~G 347 (501)
T COG3845 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHG 347 (501)
T ss_pred CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCc
Confidence 1357999999999999999999999999999999999865 3459999999986 222 23346899999874
Q ss_pred CCCCCCHHHHHHHHHHhh----CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 952 HSPFVTIYESLLFSAWLR----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
+.+.+|+.||+.+...-+ ...-.+....+++..++++.++.....-. .| ...||||++||+-+||+|..+|+
T Consensus 348 lv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~---~~-a~~LSGGNqQK~IlaREl~~~p~ 423 (501)
T COG3845 348 LVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD---AP-ARSLSGGNQQKLILARELARRPD 423 (501)
T ss_pred cccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC---cc-hhhcCCcceehhhhhhhhccCCC
Confidence 467899999998765421 11134556778889999999988632211 11 46799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
+|+..+||-|||..+.+.|.+.|.+.++.|+.|++++-+++ ++++.+||+.+|.+ |+++...+..
T Consensus 424 lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 424 LLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred EEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 99999999999999999999999999999999999999998 79999999999986 6888777654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=502.88 Aligned_cols=263 Identities=41% Similarity=0.757 Sum_probs=244.9
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEc
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 930 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~ 930 (1156)
.+..+.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3457899999998865421 3478999999999999999999999999999999999998754 689999999
Q ss_pred CccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 931 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 931 g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
|++.....+++.+|||+|+|.++|.+||+|+|.|+|.+|.+...+.++++++|+++++.++|.+++|+.+|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888899999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||||+||.+|+.||.||||||||||||+.++..++++|++++++|+|||||+|||+.++++.||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 599999
Q ss_pred cCCCCcchhHHHHHHhCCCcccCCCCCCCccEEEEEeec
Q 001108 1091 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAA 1129 (1156)
Q Consensus 1091 g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~~l~~~~~ 1129 (1156)
|+. .++.+||+.+ |. +||+++||+||.+|+++.
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~ 285 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSV 285 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHcc
Confidence 995 6889999998 55 499999999999998874
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-46 Score=457.80 Aligned_cols=270 Identities=32% Similarity=0.597 Sum_probs=232.8
Q ss_pred CCceeEEeceeeEEeccchh--------------hhcc--cccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 852 EPHSLTFDEVVYSVDMPEEM--------------KVQG--VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~--------------~~~~--~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
.+..+.|.++.|+++..... +..+ ...+++.+|+|||+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 35689999999998754310 0001 1234567999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc
Q 001108 916 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995 (1156)
Q Consensus 916 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~ 995 (1156)
|+..++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|.+.++.+...+.+++++.++++++.++|.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876444689999999886543 345689999999999999999999998877755445556667789999999999999
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhc
Q 001108 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075 (1156)
Q Consensus 996 ~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~ 1075 (1156)
.|+.+|....++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99988876678999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred CeEEEEecCcEEEEecCCCCcchhHHHHHHhCCCcccCCCCCCCccEEEEEeec
Q 001108 1076 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAA 1129 (1156)
Q Consensus 1076 d~v~~l~~Gg~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~np~~~~l~~~~~ 1129 (1156)
|++++|++ |+++|.|+. +++++||+++ |. .||+++|||||++|+++.
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~ 321 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANG 321 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCc
Confidence 99999985 699999985 6889999998 44 599999999999999874
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=376.93 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=190.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++.+| ++..+|+|||++|++||+++|+|||||||||||+||.++.. +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6778888776 45789999999999999999999999999999999999887 56899999996543
Q ss_pred ----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
-...++.+|+|+|+..+||.+||.||+.++-..- ...++++.++...+.|+.+||.+.++.++ ..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2346778999999999999999999999875432 24466777888899999999999999874 579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||||+|||||+.+|+++++|||||+|||+....|.+.+++++++|.|.||+||++.+ .-+.+||+++|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999986 6788999999985 7888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=460.82 Aligned_cols=267 Identities=37% Similarity=0.637 Sum_probs=235.0
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCH
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 567999999999999999999999999999999999987543 3579999999987666677889999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~-~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg 1037 (1156)
+|||.|++.++.+.....+++++.++++++.++|.+++|+.+|.++ .++|||||||||+||+||+.+|++|||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999998877666677778889999999999999999998753 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCCCcchhHHHHHHhCCCcccCCCCC
Q 001108 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGY 1117 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~~~~~~~~~~f~~~~g~~~~~~~~ 1117 (1156)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.|+. +++.+||+++ |. .||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~-g~-~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDL-GH-PCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHc-CC-CCCCCC
Confidence 9999999999999999888999999999998789999999999985 799999995 6789999998 44 699999
Q ss_pred CCccEEEEEeeccchhhc-----CCChHHHhccCHhHHHHh
Q 001108 1118 NPATWMLEVSAASQELAL-----GIDFTEHYKRSDLYRYKQ 1153 (1156)
Q Consensus 1118 np~~~~l~~~~~~~~~~~-----~~d~~~~~~~s~~~~~~~ 1153 (1156)
||+||++|+++...+... ..++.+.|++|+.+++.+
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 310 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDML 310 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHH
Confidence 999999999875432211 136777888887765543
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=369.82 Aligned_cols=220 Identities=25% Similarity=0.422 Sum_probs=187.3
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC----cCccceEEEEcCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FVPQRTAAYISQHDNHIG 239 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~----~~~~~~~~yv~Q~d~~~~ 239 (1156)
...+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++.. ...|+.+|+|+|+.++||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 356999999999999999999999999999999999999998 9999999976532 123678999999999999
Q ss_pred CCCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 240 EMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
++||.||+..+... ++. ...+++..+..+|+.+||.+.+|.
T Consensus 91 HlTvleNv~lap~~v~~~----------------------------------~k~eA~~~A~~lL~~VGL~~ka~~---- 132 (240)
T COG1126 91 HLTVLENVTLAPVKVKKL----------------------------------SKAEAREKALELLEKVGLADKADA---- 132 (240)
T ss_pred cchHHHHHHhhhHHHcCC----------------------------------CHHHHHHHHHHHHHHcCchhhhhh----
Confidence 99999999987421 111 112234456778999999998885
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
++.+|||||||||+|||||+.+|+++++|||||+|||....++.+.+++++. .+ .+++.++|....+-+.+|||+.|
T Consensus 133 -yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eG-mTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 133 -YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred -CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cC-CeEEEEechhHHHHHhhheEEEe
Confidence 4567999999999999999999999999999999999999999999999986 34 45555889999999999999999
Q ss_pred cCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHh
Q 001108 399 SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 435 (1156)
++|+++.+|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999876 456766666777654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=402.07 Aligned_cols=202 Identities=19% Similarity=0.233 Sum_probs=156.4
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..+.++|+.+.|+. +..++++++|.|.+++.+|+|||||+||||||+++.|... +..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 35789999988862 2358999999999999999999999999999999999876 456776543221
Q ss_pred CChhcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 934 KKQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 934 ~~~~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.+++..|+- .+.-..++.|+++=. . ..+...+.+..++..+||..-.+... .+.||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~-----~---~~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPK-----F---PDEKELEEMRSILGRFGLTGDAQVVP----MSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHh-----c---cccchHHHHHHHHHHhCCCccccccc----hhhcccc
Confidence 223334432 222235666665411 1 11234566788999999985443321 4679999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||+||..|+.++..|.||+|||||+|||..+...+-+.|.+. ..+||+++||..+ |-..++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999998865 4589999999875 788999999999999999998
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 74
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=378.83 Aligned_cols=219 Identities=23% Similarity=0.331 Sum_probs=193.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+++++|+..+... ..+...+|+|||++|++||++||+|.||||||||++++.++.. |.+|.|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5678887665421 1134679999999999999999999999999999999999887 57999999997653
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ..+++.+|+++|++.++...||+||+.|+..+.. .++++.+++|.++++.+||.+..+.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 2 3467789999999999999999999999988764 56788999999999999999988887 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+|||||+.+|+||++|||||+|||++.+.|+++|+++.++ |.||+++||+++. +-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999755 9999999999874 7789999999986 7999
Q ss_pred EecCCC
Q 001108 1089 YVGPLG 1094 (1156)
Q Consensus 1089 ~~g~~~ 1094 (1156)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999853
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=362.36 Aligned_cols=231 Identities=26% Similarity=0.366 Sum_probs=199.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+++++|+.++ +++.+++|||++|++||+++||||||+||||||++|.|... +.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 57888888775 56789999999999999999999999999999999999887 5789999999886
Q ss_pred Ch------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 001108 935 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~ 1007 (1156)
.+ ...++++|+++|+-.+|..+||+||+.|..+ .....+++..++.+..-|+.+||.+. .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 2356779999999999999999999999743 34456777788888889999999887 5655 467
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
|||||+||++|||||+.+|+|||+||||+||||.++..+-++|+++.+. |.|+|++|||.+ +++..||++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999876 999999999997 58999999999996 79
Q ss_pred EEEecCCC----CcchhHHHHHHhCCC
Q 001108 1087 EIYVGPLG----RHSCHLISYFEAIPG 1109 (1156)
Q Consensus 1087 ~~~~g~~~----~~~~~~~~~f~~~~g 1109 (1156)
++..|+.. ....-+.+||....+
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 99999964 122355667776543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=392.06 Aligned_cols=214 Identities=30% Similarity=0.442 Sum_probs=189.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++..+. .++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 5 i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCc
Confidence 56677776663 14689999999999999999999999999999999999887 46899999998765
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.+||++|++.+++.+||+|+|.|.+.++.... ...+++++++++.++|.+..++. +++||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHH
Confidence 4 4567789999999999999999999999999986542 34567899999999999855544 457999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+||+||+++|++|||||||+||||.++..++++|++++++| +||+++||+++ ++...||++++|++ |++++.|+
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~ 220 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999887 89999999997 68888999999986 79999997
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 221 ~ 221 (293)
T COG1131 221 P 221 (293)
T ss_pred H
Confidence 4
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=374.21 Aligned_cols=224 Identities=29% Similarity=0.383 Sum_probs=194.6
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDN 236 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~ 236 (1156)
...++|+|||++|++|++.+|+|+||||||||++++.++..|+ +|+|.++|.++..... |+.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999999 9999999988766542 478999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1156)
++...||.||++|+.++.+... .+.+.++.++|+.+||++.+|.
T Consensus 94 LLssrTV~~NvA~PLeiag~~k----------------------------------~ei~~RV~elLelVgL~dk~~~-- 137 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPK----------------------------------AEIKQRVAELLELVGLSDKADR-- 137 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcc--
Confidence 9999999999999988765321 1234578889999999988875
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
++.+|||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++-++. +.+|+.++|-+.-+-+.||||.
T Consensus 138 ---yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 138 ---YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ---CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 455799999999999999999999999999999999999999999999987754 5556668889999999999999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhhc
Q 001108 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVT 437 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~ 437 (1156)
+|++|+++++|+..++ |..|.+.-.-.|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999987 45566665666665544
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=362.09 Aligned_cols=210 Identities=27% Similarity=0.397 Sum_probs=185.6
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (1156)
.+.+++|+|++|++|++++++|||||||||+|++|.++++|+ +|+|.+||.++.+.. .|+.+|||-|.-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 345999999999999999999999999999999999999999 999999999987754 36899999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+||.|||.+--.+++... ++.+.+++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 999999998877765432 1234568899999999752 134577
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+..|||||+|||.+||||+.+|+|++||||+++|||-++.++.+.++++-+.. +.+||.++|+..|++.++|+|++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceEEEecC
Confidence 88999999999999999999999999999999999999999999998876544 45566689999999999999999999
Q ss_pred CeEEEEcChhHHHH
Q 001108 401 GQIVYQGPRELVLE 414 (1156)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1156)
|+++.++++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999864
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=369.86 Aligned_cols=216 Identities=26% Similarity=0.429 Sum_probs=186.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+ ++ ++|+||||+|++|+++||+||||||||||+++|.|..+ +.+|+|.+.|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 478999999985 22 59999999999999999999999999999999999776 5689999999887
Q ss_pred ChhcccceEEEeccCCCC--CCCCCHHHHHHHHHHhhCC--CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQETFARISGYCEQNDIH--SPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~--~~~~Tv~e~l~~~~~lr~~--~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.....+..+|||||...+ ..-+||+|-+..+..-+.. ...+ ++.++.++++|+.+|+.+++++.+| +|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 654445679999996533 2347999999887443321 1222 3346789999999999999999865 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||+|||.|||||+.+|++|+|||||+|+|+.++..++++|+++.++|+||++++||++ .+.++||+++.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999998 4899999999997 589999
Q ss_pred cCCC
Q 001108 1091 GPLG 1094 (1156)
Q Consensus 1091 g~~~ 1094 (1156)
|+..
T Consensus 220 G~~~ 223 (254)
T COG1121 220 GPPE 223 (254)
T ss_pred cChh
Confidence 9875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=364.79 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=181.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++++++++. ...+|+|||++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 367788887774 3679999999999999999999999999999999999987 5689999999887
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ....+|||+|++.++|.+||+||+.|+...+. .+.+++++.+.++++.+||.+..++. +.+|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 34568999999999999999999999987654 34556677899999999999999987 4579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
||+|||||+.+|+||+||||+++||+.++..+++.|.++.+ +++|||++|||.+ |...++|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999864 5899999999987 677889999999875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=363.97 Aligned_cols=208 Identities=27% Similarity=0.407 Sum_probs=175.9
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+.+||+-.|.... ....+|++|||+|++||++||||||||||||||++|.|... +.+|.|.++|.+...
T Consensus 3 ~~~~v~k~y~~~~---------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~ 71 (226)
T COG1136 3 ELKNVSKIYGLGG---------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTK 71 (226)
T ss_pred EEeeeEEEeccCC---------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCc
Confidence 4567765554321 22579999999999999999999999999999999999887 468999999976542
Q ss_pred ------h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccc-cccCCCCCCCC
Q 001108 937 ------E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSGL 1008 (1156)
Q Consensus 937 ------~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~~~~~~~~~L 1008 (1156)
. .+++.+|||+|+..+.|.+||.||+.+...+.... ....++.++++++.++|.+..+ .. +.+|
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eL 143 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSEL 143 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhc
Confidence 1 23457999999999999999999999887665332 2255677889999999987665 44 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
||||||||+|||||+.+|+|||.||||.+||+++.+.|+++++++.++ |+|||++|||+ ++...|||++.|++|+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999765 99999999997 4788999999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=373.13 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=190.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++.+|+++.|+ ++.+|+||||+|++|++++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367899999885 4679999999999999999999999999999999999776 5689999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.+||+||.....+.+||+|.+.++..-+... ....++.++.++++|+.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 457789999999998888999999999875432211 1123344557999999999999999875 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||+.|||||+++|+||+||||||+||...+..|+++++++. ++|+|||+++||++. ...+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 99999999999999999999999999999999999999999998 459999999999986 7899999999986 79999
Q ss_pred ecCCC
Q 001108 1090 VGPLG 1094 (1156)
Q Consensus 1090 ~g~~~ 1094 (1156)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=358.86 Aligned_cols=213 Identities=26% Similarity=0.365 Sum_probs=190.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++|+||+..|. ++.+++|+|++|++||++.++|||||||||+|++|.++.. +.+|+|.|+|.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 57888887663 4679999999999999999999999999999999999887 56999999999875
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~~~~~~~~LSg 1010 (1156)
. ...+|.+|||-|.-.++|++||.||+.+--.+. ..++++.+++++|+|+.++|.+ +.++. +.+|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457889999999999999999999999876654 3456788899999999999986 67776 457999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||+|||.+||||+++|+||+||||+++|||.++..+++.++++.++ |+|||++|||.+ +.+.++||+.+|+. |+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999998755 999999999997 78999999999985 68887
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.+++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 7764
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=382.75 Aligned_cols=216 Identities=31% Similarity=0.453 Sum_probs=193.5
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc-ceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999999 99999999999998775 88999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
||.|+.+.++... .+.+.+++++.+.|+|++..|.. +++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~-----P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRK-----PLQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 9999998775321 12345678899999999988754 56799
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+|||||+.+|++++||||+|.||...+..+...|+++.+ .-++++|.++|+..|+..++|+|++|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~-~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE-RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH-hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999998654 456667778999999999999999999999999
Q ss_pred EcChhHHHHHHHhcCCCCCCCCChHHHH
Q 001108 406 QGPRELVLEFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1156)
.|++.++ |..|.+.-+|.|+
T Consensus 215 ~g~p~el--------y~~P~n~fVA~Fi 234 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFI 234 (338)
T ss_pred cCChHHH--------hhCccchhhhhhc
Confidence 9999998 4567777777775
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=348.88 Aligned_cols=201 Identities=28% Similarity=0.366 Sum_probs=184.6
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh--hcccceEEEeccCCCCCCCCCHH
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
.+++||||+++.||++||+|+|||||||+|++|++... |.+|.|.++|.+... ...++.+|.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 48999999999999999999999999999999999877 578999999998643 45678899999888999999999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD 1039 (1156)
|||.|.+.+.. ....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 99999998873 4556778899999999999999999976 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1040 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
..+.+.+.+.++++.+.|++||++||.++ ++...||++++|++ |++++.|...
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 99999999999999988999999999986 78889999999997 6999999853
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=407.66 Aligned_cols=255 Identities=22% Similarity=0.390 Sum_probs=209.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCC---CcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL---PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1156)
..+..-..+|+++.+|..|. +.. -|... .+..|+|+||+|.|..
T Consensus 431 lmkgvGAs~rvFel~dr~P~-----i~~----~G~~~p~~~~G~IeF~~VsFaYP~------------------------ 477 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPR-----IPL----TGTLAPDHLQGVIEFEDVSFAYPT------------------------ 477 (716)
T ss_pred HHHhcchHHHHHHHhccCCC-----CCC----CCccccccccceEEEEEeeeecCC------------------------
Confidence 34555667888888887765 221 14333 4678999999999843
Q ss_pred hhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEE
Q 001108 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1156)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv 231 (1156)
+ +..+||+|+||+|+||+.|||+||||+||||+.++|..+++|+ +|+|++||+|+.++++ ++.+|+|
T Consensus 478 ------R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 478 ------R-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred ------C-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeee
Confidence 2 3467999999999999999999999999999999999999999 9999999999988776 5889999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
.|+|.+|. .||+|||.|+.. ....+.+..+++....+ +. +.+++++
T Consensus 548 ~QEPvLFs-~sI~eNI~YG~~----~~t~e~i~~AAk~ANah--------------------------~F---I~~~p~g 593 (716)
T KOG0058|consen 548 GQEPVLFS-GSIRENIAYGLD----NATDEEIEAAAKMANAH--------------------------EF---ITNFPDG 593 (716)
T ss_pred eccceeec-ccHHHHHhcCCC----CCCHHHHHHHHHHhChH--------------------------HH---HHhCccc
Confidence 99998875 699999999874 22333444444333221 11 4579999
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
+||.||+++. .||||||||++|||||+++|+||||||.||+||+.+...+.+.|.+..+ ++|+++ |. |+..+.+.
T Consensus 594 Y~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IA-HRLSTV~~ 668 (716)
T KOG0058|consen 594 YNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IA-HRLSTVRH 668 (716)
T ss_pred cccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Ee-hhhhHhhh
Confidence 9999999887 5999999999999999999999999999999999999999999988654 355554 44 45788999
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|+|+++++|++++.|+++|+++
T Consensus 669 Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 669 ADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred ccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999875
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=383.34 Aligned_cols=222 Identities=30% Similarity=0.442 Sum_probs=196.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1156)
..+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|.+++...+ +|.+++|+|+-.+||+|||
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 45999999999999999999999999999999999999999 9999999999998877 4889999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|+.+.++...+ .+.+.+++++|+.++|++.++. .+.+
T Consensus 95 ~~NVafGLk~~~~~~~---------------------------------~~i~~rv~e~L~lV~L~~~~~R-----~p~q 136 (352)
T COG3842 95 EENVAFGLKVRKKLKK---------------------------------AEIKARVEEALELVGLEGFADR-----KPHQ 136 (352)
T ss_pred HHHhhhhhhhcCCCCH---------------------------------HHHHHHHHHHHHHcCchhhhhh-----Chhh
Confidence 9999999874431110 1233568889999999987664 4557
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+|||||+.+|++||||||.|+||..-+.++...|+++.+.. +.+.|.++|+..|++.++|+|++|++|+|
T Consensus 137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCce
Confidence 99999999999999999999999999999999999999999999987755 56666689999999999999999999999
Q ss_pred EEEcChhHHHHHHHhcCCCCCCCCChHHHHHhh
Q 001108 404 VYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (1156)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 436 (1156)
...|+++++ |..|...-+|+|+-+.
T Consensus 216 ~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 216 EQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 999999998 5678888889988654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=355.01 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=188.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++-.|+ +++++|+|||++|++||++||+|+|||||||||++|.|... +..|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478888887774 45789999999999999999999999999999999999765 5689999999764
Q ss_pred Ch------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-----CCCChHHHHHHHHHHHHHcCCCcccccccCCC
Q 001108 935 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003 (1156)
Q Consensus 935 ~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~ 1003 (1156)
.. ..+++.+||++|++.+.+.+||.+|++.+..-+.+ -....++.+..+-++|+.+|+.+.+-...
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 34567899999999999999999999876432211 12233455667788999999998887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.|||||+|||+|||||+.+|+||+.|||+++|||.+++.||+.|+++.+ +|.|||++.|+.++ ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 46999999999999999999999999999999999999999999999975 59999999999986 778999999998
Q ss_pred cCcEEEEecCCCC
Q 001108 1083 RGGQEIYVGPLGR 1095 (1156)
Q Consensus 1083 ~Gg~~~~~g~~~~ 1095 (1156)
. |+++|.||...
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 6 79999999753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=369.41 Aligned_cols=210 Identities=33% Similarity=0.454 Sum_probs=180.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
++||+|+||++++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++.. .+.+|||||.....+.+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 45999999999999999999999999999999999999998 9999999999887665 37899999998888899
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+|-+.++..-.. + . .. ...++....++..|+.+|+.+.++..+.
T Consensus 92 tV~d~V~~GR~p~~-~-~----------------~~------------~~~~~D~~~v~~aL~~~~~~~la~r~~~---- 137 (258)
T COG1120 92 TVYELVLLGRYPHL-G-L----------------FG------------RPSKEDEEIVEEALELLGLEHLADRPVD---- 137 (258)
T ss_pred EEeehHhhcCCccc-c-c----------------cc------------CCCHhHHHHHHHHHHHhCcHHHhcCccc----
Confidence 99999998853210 0 0 00 0011112357888999999999987665
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||.|||||+.+|++|+||||||+||...+.++++.++++.+..+ .+||.+.|+...+.++||++++|++|
T Consensus 138 -~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~-~tvv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 138 -ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG-LTVVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred -ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999987544 45555778999999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
+++.+|++++++
T Consensus 216 ~i~a~G~p~evl 227 (258)
T COG1120 216 KIVAQGTPEEVL 227 (258)
T ss_pred eEEeecCcchhc
Confidence 999999998875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=355.22 Aligned_cols=194 Identities=27% Similarity=0.411 Sum_probs=171.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+|+|+|++|.+||+++|+|||||||||||++|+|+..|+ +|+|.++|.++. .+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 45999999999999999999999999999999999999998 999999999873 4567899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+....+... .+...+++.+|+.+||....| +++++|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~-----~~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED-----KYPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh-----cCcccc
Confidence 99999987764211 112235778899999998776 456789
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC--Ce
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQ 402 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~--G~ 402 (1156)
||||||||+|||||+.+|++|+||||+++||+.|+..+.+.|.++.+..+ .+|+.++|+-.|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~-~TvllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 99999999999999999999999999999999999999999998887554 5556689999999999999999998 44
Q ss_pred E
Q 001108 403 I 403 (1156)
Q Consensus 403 i 403 (1156)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 5
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=362.82 Aligned_cols=205 Identities=29% Similarity=0.448 Sum_probs=185.6
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc---cCCh-hcccceEEEeccCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSP 954 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~q~~~~~~ 954 (1156)
+...+++|||++|+.||++||+|||||||||||++|+|+.+ +..|.|.++|. +..+ ....|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 34578999999999999999999999999999999999987 56899999998 5544 345678999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP 1034 (1156)
.|||.+|+.|+...+ ...++..+.+.+++++|+.++|+++.+.+ +.+|||||||||++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998776 33455677888999999999999999987 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1035 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+++||+.-+..+.+.|+++.+. |.|+|++|||+. ++.+.+|||++|++ |++...|+.
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p 222 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPP 222 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCH
Confidence 9999999999999999999876 999999999997 79999999999987 688888875
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=347.95 Aligned_cols=209 Identities=26% Similarity=0.364 Sum_probs=179.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1156)
+.||+|||++|++||+++|||||||||||||++|.|++.|+ +|+|.++|.++.+... ++++|+++|+-.+|
T Consensus 21 ~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALF 97 (263)
T COG1127 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97 (263)
T ss_pred EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccc
Confidence 45999999999999999999999999999999999999999 9999999999876543 46799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
..+||+||+.|..+-...-. ....+..+..-|+..||+.. +++
T Consensus 98 ssltV~eNVafplre~~~lp---------------------------------~~~i~~lv~~KL~~VGL~~~----~~~ 140 (263)
T COG1127 98 SSLTVFENVAFPLREHTKLP---------------------------------ESLIRELVLMKLELVGLRGA----AAD 140 (263)
T ss_pred cccchhHhhheehHhhccCC---------------------------------HHHHHHHHHHHHHhcCCChh----hhh
Confidence 99999999999875432100 01112234445778899754 345
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.++.+||||++||++||||++.+|+++|+||||+||||.++..+.+.++++.... +.+++.++|+.++++..+|+|++|
T Consensus 141 ~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 141 LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-CCEEEEEECChHHHHhhhceEEEE
Confidence 6788899999999999999999999999999999999999999999999887654 455556899999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
.+|+|+++|+++++.+
T Consensus 220 ~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 220 ADGKVIAEGTPEELLA 235 (263)
T ss_pred eCCEEEEeCCHHHHHh
Confidence 9999999999999864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=375.73 Aligned_cols=212 Identities=34% Similarity=0.488 Sum_probs=184.5
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc--CccceEEEEcCCCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1156)
.+.+|+||||++++|++++|+||||||||||+++|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 357999999999999999999999999999999999999998 99999999887652 3457899999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+|||.|.+++.+.... .....++++++.+||++..++ .+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~-----~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANK-----KV 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCc-----ch
Confidence 999999999988764210 012357889999999984444 45
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
++||+||||||+||.||+++|++|||||||+|||+.++.++++.|++++.. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999998864 4355555788889999999999999999
Q ss_pred eEEEEcChhHHHHHHHh
Q 001108 402 QIVYQGPRELVLEFFAS 418 (1156)
Q Consensus 402 ~iv~~G~~~~~~~~f~~ 418 (1156)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776544
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=360.61 Aligned_cols=223 Identities=29% Similarity=0.443 Sum_probs=188.4
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc---cCCCcCc-cceEEEEcCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEFVP-QRTAAYISQHDNHIG 239 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~---~~~~~~~-~~~~~yv~Q~d~~~~ 239 (1156)
...+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.+|||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 345899999999999999999999999999999999999999 999999999 6555333 488999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+|||.+||+|+.+++.... . ..+.+.+++++|+.+.|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~~p-----~---------------------------~~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKERP-----S---------------------------EAEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhcccccccCC-----C---------------------------hhhHHHHHHHHHHHhcccchhh-----c
Confidence 9999999999997762110 0 0123456788899999987655 6
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
++.+|||||||||++||||+..|++|+||||+++||...+..+-+.|+++.... +.+.+.++|+..|++++||+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-~~ttvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL-GVTTVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh-CceEEEEeCCHHHHHhhcceEEEec
Confidence 677899999999999999999999999999999999999999999999876543 4555568999999999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHh
Q 001108 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 435 (1156)
+|+|...||++++. ..|...-+..|+-+
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 99999999999984 34555555555543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=335.94 Aligned_cols=213 Identities=25% Similarity=0.327 Sum_probs=184.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.|+||+..|+. ...+|+||||.|++||++-|+|||||||||||++|.+... +..|.|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 578888877753 3569999999999999999999999999999999999766 56899999999865
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ...+|++|+|+|+..+.+..||+||+.|...... .+..+.+++|.++|+.+||.+..+.. +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 2357889999999999999999999999877664 34567788899999999999888776 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++||||++.+|++|+.||||.+|||..+..||+++.++.+.|.|||+.|||.++ +...-.+++.|.+ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999999999999999999653 4444468888886 67776
Q ss_pred ecC
Q 001108 1090 VGP 1092 (1156)
Q Consensus 1090 ~g~ 1092 (1156)
...
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=372.66 Aligned_cols=214 Identities=28% Similarity=0.399 Sum_probs=192.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++..|. +..+|+|||++|+.||+++|+|||||||||||++|+|+.. +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 467888887763 2228999999999999999999999999999999999987 5789999999987
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
+. ...+|.+++|+|+..+||.|||+||+.|+..++. .++++.+++|+++.+.|+|.++.++. +.+||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 66 3456889999999999999999999999987763 45677889999999999999999987 457999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+++|++++||||.|+||++.+..+...|+++.++ |.|+|.+|||.. |.+.++|++.+|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998755 899999999974 7889999999998 579999987
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
+
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 5
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=374.07 Aligned_cols=215 Identities=27% Similarity=0.405 Sum_probs=187.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 3588999988874 3569999999999999999999999999999999999876 568999999988
Q ss_pred CCh--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 934 ~~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
... ...++.+|||+|++.+++.+||+||+.|.+.++. .+..+..+.++++++.++|.+..++.+ ++||+|
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2345779999999999999999999998776542 233444567889999999988877764 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+++|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999878999999999987 57889999999986 6999999
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 221 ~~ 222 (306)
T PRK13537 221 AP 222 (306)
T ss_pred CH
Confidence 75
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=338.98 Aligned_cols=221 Identities=26% Similarity=0.395 Sum_probs=179.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1156)
+.+|+|||+.|+++++||++|||||||||||++|.+..+ |..+++|+|.++|+++.+.. .|+++|.|+|.++.
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 349999999999999999999999999999999998865 34688999999999976542 36899999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (1156)
|| +|++||+.|+.+++|... +.+. .+++..|+.-+|.+ ..|. .
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~ld--------------------------------eiVe~sLk~AaLWdEVKDr-L 143 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KELD--------------------------------EIVESSLKKAALWDEVKDR-L 143 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHHH--------------------------------HHHHHHHHHhHhHHHhHHH-h
Confidence 99 999999999999887532 1111 22333344444432 1221 1
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
. +...+|||||+||++|||+|+-+|+|||||||||+|||.++..|-+.+.++.+ .-+|+.++|.+.++.+..|+..
T Consensus 144 ~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 144 H-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred h-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhh
Confidence 1 22347999999999999999999999999999999999999999999998752 4455558899999999999999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHH
Q 001108 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1156)
.+..|++|++|+.+++ |..|..+...||+
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999999999987 4567776666665
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=353.46 Aligned_cols=208 Identities=27% Similarity=0.443 Sum_probs=175.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCC--CCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD--NHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (1156)
++|+|||+.+++|++++|+||||||||||+|+|+|++.|. +|+|.++|.+......+..||||||.. .+-.-+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 3999999999999999999999999999999999999998 999999999887766667899999953 33344799
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+|.+..+..-+. + ..... ..+.+..+++.|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~-g----~~~~~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKK-G----WFRRL-------------------------NKKDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCcccc-c----ccccc-------------------------cHHHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 999998742211 0 00000 111234678899999999999988885
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.+. +.+|+.++|+...+.++||+|+.|+. ++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-HL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-ee
Confidence 9999999999999999999999999999999999999999999998764 55566689999999999999999976 68
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999988753
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=341.10 Aligned_cols=215 Identities=26% Similarity=0.387 Sum_probs=180.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1156)
+++|+|||+.|++|||++|+|||||||||||++|.|..+|+ +|+|.+||.++..... ++.+||++|+..+.
T Consensus 17 ~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 45999999999999999999999999999999999999998 9999999988765542 46899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||.+|+..+..-+. +.+.. -.++. .++.+..+-..|+.+|+.+.+.+..+
T Consensus 94 ~r~sv~~NVl~grl~~~--s~~~s---------lfglf---------------sk~dk~~Al~aLervgi~~~A~qra~- 146 (258)
T COG3638 94 PRLSVLENVLLGRLGYT--STWRS---------LFGLF---------------SKEDKAQALDALERVGILDKAYQRAS- 146 (258)
T ss_pred cccHHHHHHHhhhcccc--hHHHH---------HhCCC---------------CHHHHHHHHHHHHHcCcHHHHHHHhc-
Confidence 99999999998763321 11110 11111 11223345567899999998887766
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.|||||+|||+|||||+.+|++++-|||+++|||.++.++|+.|+++....+.|+|+. .|...-+.++||||+-|
T Consensus 147 ----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA~~Y~~Riigl 221 (258)
T COG3638 147 ----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLAKKYADRIIGL 221 (258)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHHhhheEe
Confidence 4999999999999999999999999999999999999999999999988766666664 56678999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
.+|+|+|.||++++-+
T Consensus 222 ~~G~ivfDg~~~el~~ 237 (258)
T COG3638 222 KAGRIVFDGPASELTD 237 (258)
T ss_pred cCCcEEEeCChhhhhH
Confidence 9999999999988654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=372.32 Aligned_cols=216 Identities=26% Similarity=0.382 Sum_probs=192.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++..|. +..+|+|||++|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578888887763 4689999999999999999999999999999999999887 5689999999987
Q ss_pred Chh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
... ..+|.+|+|+|+..+||+|||+||+.|+..++. ...+++.+++++++++.++|.++.++.+ .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 653 456889999999999999999999999977442 3345667889999999999999998874 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+||||.|+||.+-+..++.-++++.++ |.|.|++|||.. +.+.++||+.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998654 999999999986 78899999999986 78988887
Q ss_pred CC
Q 001108 1093 LG 1094 (1156)
Q Consensus 1093 ~~ 1094 (1156)
+.
T Consensus 221 P~ 222 (352)
T COG3842 221 PE 222 (352)
T ss_pred HH
Confidence 53
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=336.17 Aligned_cols=217 Identities=23% Similarity=0.317 Sum_probs=186.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC---CCCeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 931 (1156)
.++++|++.+|. ++.+|+|||+.|++++++||+|||||||||||++|.... .+-..+|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 577889988774 467999999999999999999999999999999999743 3446789999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGV 1005 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~ 1005 (1156)
.++.. ...++.+|.|+|.+..+| +|++||+.|+.++....+ ++.++.|++.|+...|.+- .|++... .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 87643 357788999999999999 999999999988875433 6778889999999988753 4443322 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.+|||||+|||||||||+-+|+||+||||||+|||.+...|-++|.++. +.-|||++||.+. ......|+..++.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 4799999999999999999999999999999999999999999999997 4689999999986 47788899999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
+++.+|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999985
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=408.01 Aligned_cols=258 Identities=27% Similarity=0.368 Sum_probs=210.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.|+.+...+|+.++++.++|.-..+. ....+....+++|+|++|.+...
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~~-------------------------- 484 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGPD-------------------------- 484 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCCC--------------------------
Confidence 78899999999999999888211110 12334446789999999998531
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...+|+|+|++|+|||.+||+|+||||||||+|+|+|++.|. +|+|.+||+++++..+ |+.+|||+|+
T Consensus 485 ------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 485 ------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred ------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 124999999999999999999999999999999999999998 9999999999887665 5899999996
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+ ++++.||+||+.++. +....+.+.++++....+ + .+..++.++||
T Consensus 556 ~-~Lf~gSI~eNi~l~~----p~~~~e~i~~A~~~ag~~--------------------------~---fI~~lP~gy~t 601 (709)
T COG2274 556 P-FLFSGSIRENIALGN----PEATDEEIIEAAQLAGAH--------------------------E---FIENLPMGYDT 601 (709)
T ss_pred c-hhhcCcHHHHHhcCC----CCCCHHHHHHHHHHhCcH--------------------------H---HHHhccccccc
Confidence 6 555789999999875 223333444444332111 1 14568999999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+.+. +||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++. .++|+|+..| +..+.+.||+
T Consensus 602 ~v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaH--Rl~ti~~adr 676 (709)
T COG2274 602 PVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAH--RLSTIRSADR 676 (709)
T ss_pred ccccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEc--cchHhhhccE
Confidence 9998665 799999999999999999999999999999999999999999999864 3566666443 4678999999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|+||++|+|+.+|+++++++
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999986
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=343.63 Aligned_cols=196 Identities=30% Similarity=0.441 Sum_probs=166.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
..+|++||+.|++||+++|+|||||||||||++|.|+..|+ +|.|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999998876542 3679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
+|++||+||+.+++.+.+.... .....++.+++.+||.+..+.
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~--- 137 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLK--- 137 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhcc---
Confidence 9999999999988766543211 012345778899999866551
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..+..|||||||||+|||||+.+|+++|.||||..||+.++..|++.|+++.+..+.| |+.++|+ +++...|||++.
T Consensus 138 -~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~t-ii~VTHd-~~lA~~~dr~i~ 214 (226)
T COG1136 138 -KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKT-IIMVTHD-PELAKYADRVIE 214 (226)
T ss_pred -CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCE-EEEEcCC-HHHHHhCCEEEE
Confidence 3345799999999999999999999999999999999999999999999987754444 4446665 678889999999
Q ss_pred EcCCeE
Q 001108 398 LSDGQI 403 (1156)
Q Consensus 398 L~~G~i 403 (1156)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=370.07 Aligned_cols=217 Identities=23% Similarity=0.297 Sum_probs=186.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++.+ .....+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6788998887421 012469999999999999999999999999999999999876 56899999998764
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ..++.+||++|+..+++.+||+||+.|...... .+.++.++++.++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 235679999999999999999999998765432 344556677899999999998888763 5799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+|||||+.+|++|+||||||+||+.++..++++|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 47788999999986 7999
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99885
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=330.25 Aligned_cols=206 Identities=32% Similarity=0.377 Sum_probs=182.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1156)
..+++||||.++.|++++|+|||||||||+|++|++++.|+ +|+|++||.+..+.. .++.+|.++-+..++..||
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT 91 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLT 91 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhh
Confidence 34899999999999999999999999999999999999999 999999999875432 3688999998888999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
++|||.|.+++.+.. +.+.+.+++.+.+.|+|.+|.|+.+|+
T Consensus 92 ~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~~---- 133 (245)
T COG4555 92 ARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVGE---- 133 (245)
T ss_pred HHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHhh----
Confidence 999999988775421 112345678899999999999999985
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
+|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++. ..+.+|+..+|..+|+..+||+|++|++|+
T Consensus 134 -~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 134 -FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred -hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 99999999999999999999999999999999999999999999863 335566667899999999999999999999
Q ss_pred EEEEcChhHHHH
Q 001108 403 IVYQGPRELVLE 414 (1156)
Q Consensus 403 iv~~G~~~~~~~ 414 (1156)
+|+.|+.+++..
T Consensus 211 vv~~gs~~~l~~ 222 (245)
T COG4555 211 VVLEGSIEALDA 222 (245)
T ss_pred EEEcCCHHHHHH
Confidence 999999987754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=366.82 Aligned_cols=206 Identities=24% Similarity=0.352 Sum_probs=177.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1156)
..+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 45999999999999999999999999999999999999998 9999999998876432 46799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.|+....+... .+...++.++++.+||.+..|...
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999999765432110 011234677899999988777554
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..|||||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.+..+ .+|+.++|+...+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g-~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999875434 44555888899999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=352.63 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=181.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35678887773 2469999999999999999999999999999999999876 46899999998754
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ..+++.+||++|++.+++.+||+||+.+...... ..+.++.++.+.++++.++|.+..++.+ ..||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 2 2345679999999999999999999988643321 1233444567889999999987776653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~ 216 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIV 216 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEE
Confidence 99999999999999999999999999999999999999999998764 899999999987 47788999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 217 ~~g~~ 221 (235)
T cd03261 217 AEGTP 221 (235)
T ss_pred EecCH
Confidence 88874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=367.38 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=186.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++..++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 588999998874 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Ch--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
.. ...++.+||++|++.+++.+||+||+.|.+.++. .+..+..+.++++++.++|.+..++.+ .+|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998665542 223344556788999999998877764 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||++||+||+++|++|||||||+|||+.++..++++|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999987 57889999999986 69999998
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 256 ~ 256 (340)
T PRK13536 256 P 256 (340)
T ss_pred H
Confidence 5
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=368.05 Aligned_cols=205 Identities=24% Similarity=0.382 Sum_probs=178.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+|+++||+
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999999876554 37899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+....++++++.+||.+..+.. ++.|
T Consensus 97 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~~~L 137 (351)
T PRK11432 97 ENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----VDQI 137 (351)
T ss_pred HHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 99999875432211 01123567789999998776644 4579
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.+. .+++++.++|+..++.+++|+|++|++|+++
T Consensus 138 SgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 138 SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ-FNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987653 3455566889999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 217 ~~g~~~~~~ 225 (351)
T PRK11432 217 QIGSPQELY 225 (351)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=368.77 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=178.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ +|.++||+|+..+||++||+
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 4899999999999999999999999999999999999998 9999999998865443 47899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+....++++++.+||++..|.. +..|
T Consensus 95 eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~-----~~~L 135 (353)
T TIGR03265 95 DNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKY-----PGQL 135 (353)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCC-----hhhC
Confidence 99999875432110 01123567889999999877754 4569
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+. .++++|.++|+..++..++|+|++|++|+++
T Consensus 136 SgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987653 3455566788999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
+.|+++++.+
T Consensus 215 ~~g~~~~~~~ 224 (353)
T TIGR03265 215 QVGTPQEIYR 224 (353)
T ss_pred EEcCHHHHHh
Confidence 9999998743
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=369.16 Aligned_cols=205 Identities=25% Similarity=0.365 Sum_probs=177.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.+||.++....+ ++.+|||+|++.+++++||+
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 4999999999999999999999999999999999999998 9999999998876544 47899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+... .+....++++++.+||++..+..+ +.|
T Consensus 95 eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 135 (356)
T PRK11650 95 ENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRKP-----REL 135 (356)
T ss_pred HHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 99999875432110 011234677899999988776554 569
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++.+. .++++|.++|+..++..++|+|++|++|+++
T Consensus 136 SgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214 (356)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999987653 3455666888999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 215 ~~g~~~~~~ 223 (356)
T PRK11650 215 QIGTPVEVY 223 (356)
T ss_pred EECCHHHHH
Confidence 999999874
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=369.99 Aligned_cols=214 Identities=25% Similarity=0.366 Sum_probs=186.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++..++ +++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67889888772 12469999999999999999999999999999999999876 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ...++.+|||+|++.++|.+||+||+.|+...+ ..+..+.++.++++++.++|.++.++.+ .+|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 3 223467999999999999999999999986543 2344555677899999999998888764 579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||++. ++.+.+|++++|++ |+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998765 999999999986 68899999999985 799999985
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=368.20 Aligned_cols=206 Identities=23% Similarity=0.347 Sum_probs=178.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCce--eEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS--GTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ + |+|.++|.++....+ ++.++||+|+..+++.+|
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 4999999999999999999999999999999999999998 8 999999998865443 467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.|+.+..+... .+....++++++.+||++..|..+ +
T Consensus 96 v~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~-----~ 136 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP-----A 136 (362)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh-----h
Confidence 9999999875432110 011234678899999998777655 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++....++++++.++|+..++..++|+|++|++|+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999987653324566668899999999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
++..|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (362)
T TIGR03258 217 LAAHGEPQALY 227 (362)
T ss_pred EEEEcCHHHHH
Confidence 99999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=368.66 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=188.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 378899988774 3468999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.++.++++++.++|.++.++. +.+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 224577999999999999999999999986543 234456677899999999999988876 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+|||||++||+.++..+++.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999986 68899999999986 68999997
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 5
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=367.29 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=188.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.+. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 578999988873 3468999999999999999999999999999999999876 5689999999876
Q ss_pred Chh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
... ..+|.+|||+|+..++|.+||+||+.|+...+. .+..+.+++++++++.++|.++.++.+ ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 432 234679999999999999999999999875542 344566778999999999998887763 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|+|++||+++ ++.+.+|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999987 68899999999986 68999987
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 5
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=399.78 Aligned_cols=216 Identities=22% Similarity=0.358 Sum_probs=187.1
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|+++.++. +++.+|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46889999888741 23569999999999999999999999999999999999876 568999999988
Q ss_pred CCh--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 934 ~~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.++|.+..++.+ .+||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999877653 223344567899999999998888764 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||||+||+||+.+|+||||||||+|||+.+++.++++|+++. +|+|||++||+++ ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 6999999999986 57778999999986 6888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 73
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=367.42 Aligned_cols=229 Identities=24% Similarity=0.369 Sum_probs=193.4
Q ss_pred cCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCC
Q 001108 110 VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189 (1156)
Q Consensus 110 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 189 (1156)
..+..+...|+|+||++++.+ +++||+++||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~~---------------------------------k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYGP---------------------------------KRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeCC---------------------------------CCceecceeEEecCCCEEEEECCCCC
Confidence 567778889999999999842 12499999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHH
Q 001108 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266 (1156)
Q Consensus 190 GKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (1156)
||||+|++|.++++ . +|+|.+||+++.+... |+.||||||+. ++++-||.+||.++. +...++.+.++
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~-~LFndTIl~NI~YGn----~sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDS-VLFNDTILYNIKYGN----PSASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcc-cccchhHHHHhhcCC----CCcCHHHHHHH
Confidence 99999999999998 5 8999999999877654 57899999954 555679999999985 33445666666
Q ss_pred HHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccce
Q 001108 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (1156)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vll 346 (1156)
|++...+ |. +..|+++++|.||+++.. |||||||||++|||++.+|+|++
T Consensus 461 ~k~a~~h--------------------------d~---i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAGLH--------------------------DV---ISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcCcH--------------------------HH---HHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 6654321 11 446899999999998875 99999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 347 LDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|||||.||+.|..+|++.+... ..++|+|+.+ |. ..+..-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~Iv-H~-l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMIV-HR-LDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEEE-ec-chhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999873 2456666655 43 46788999999999999999999999976
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=367.01 Aligned_cols=214 Identities=24% Similarity=0.334 Sum_probs=187.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEE--EEEEEcCc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 932 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~--G~i~i~g~ 932 (1156)
.++++|+++++. +..+|+|||++|++||+++|+|||||||||||++|+|... +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 578899988874 2469999999999999999999999999999999999876 457 99999998
Q ss_pred cCCh-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 933 PKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 933 ~~~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
++.. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.++.++.+ .+||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 223567999999999999999999999986543 2344556677999999999999888774 579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 57889999999986 69999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9875
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=345.63 Aligned_cols=214 Identities=23% Similarity=0.334 Sum_probs=188.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.+++++|+|+. +..+|+++|++|++|+.++|+|+||||||||+++|+|... +..|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 678999999852 2579999999999999999999999999999999999877 45799999998855
Q ss_pred ----hhcccceEEEeccCCCCC-CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 936 ----QETFARISGYCEQNDIHS-PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ----~~~~~~~~gyv~q~~~~~-~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
...+++.+|||+|++..+ ..-||.|.+.|+..-. ..+.++.+++++++++.+++.+++++. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 345778899999998654 4579999999986543 445567889999999999999998876 457999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||+||.+|+.+|++|+|||||||||+.+++.+++.++++..+ |.|||++|||.+ .+.+++|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 689999999987 48888999999986 68999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9974
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=366.91 Aligned_cols=205 Identities=27% Similarity=0.374 Sum_probs=177.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.+||++||+
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998865544 47799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+....++++++.+||++..+..+ ..|
T Consensus 105 eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~L 145 (375)
T PRK09452 105 ENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQL 145 (375)
T ss_pred HHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 99999865432110 011234677899999988777554 569
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++||||||+++||..++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++
T Consensus 146 SgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 146 SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999887643 455666889999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 225 ~~g~~~~i~ 233 (375)
T PRK09452 225 QDGTPREIY 233 (375)
T ss_pred EEcCHHHHH
Confidence 999998874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=343.71 Aligned_cols=210 Identities=28% Similarity=0.394 Sum_probs=176.7
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 5678887763 2469999999999999999999999999999999999875 568999999987643
Q ss_pred h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..++.++|++|++.+++.+|++||+.+...... ......++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 1 234579999999988889999999988654321 223344566889999999987776653 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
++||+||+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999986 47788999999986 5776654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=359.18 Aligned_cols=205 Identities=27% Similarity=0.406 Sum_probs=177.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.+++.+||
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875432 24679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|.++..+.... +....++.+++.+||.+.+++.++ +
T Consensus 98 ~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 138 (306)
T PRK13537 98 RENLLVFGRYFGLSAA----------------------------------AARALVPPLLEFAKLENKADAKVG-----E 138 (306)
T ss_pred HHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCchHhcCchh-----h
Confidence 9999986655432100 011245678899999988887765 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|...++.++||+|++|++|++
T Consensus 139 LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~i 216 (306)
T PRK13537 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGRK 216 (306)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 45566678899999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++..
T Consensus 217 ~~~g~~~~l~~ 227 (306)
T PRK13537 217 IAEGAPHALIE 227 (306)
T ss_pred EEECCHHHHHh
Confidence 99999998764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=326.67 Aligned_cols=205 Identities=26% Similarity=0.365 Sum_probs=182.4
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhc----ccceEEEeccCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 954 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~ 954 (1156)
+++.++++||+.|++||++||+|||||||||.+.++.|... +.+|.|.++|.++.... .+.-+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 45789999999999999999999999999999999999877 56899999999876532 2235899999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP 1034 (1156)
.+||+||++.....+.. +....+++++++++|+.+++.++++... ..||||||+|+.|||||+.+|+.|+||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999987766642 2233466677899999999999999863 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
++|+||.+...|+++++.+.+.|.-|++|-|... +....|||.+++.+ |+++..|.+
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence 9999999999999999999999999999999987 78999999999987 699999985
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=400.17 Aligned_cols=258 Identities=23% Similarity=0.391 Sum_probs=210.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCC--CcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL--PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1156)
...++....+++++++..+. +... +..+... -..+|+|+||+|.|.
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~-----i~~~-~~~~~~~~~~~G~I~~~~V~F~YP-------------------------- 998 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPT-----IDPD-STSGGKLPNVKGDIEFRNVSFAYP-------------------------- 998 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCC-----CCCC-CCCCCccccceeEEEEeeeEeeCC--------------------------
Confidence 34577778888888887763 2111 1234223 356799999999983
Q ss_pred hhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEc
Q 001108 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1156)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~ 232 (1156)
++ +..+||+|+|+++++|+.+||+|||||||||...+|-+.|+|+ +|.|.+||+++++.+. |+++|.|+
T Consensus 999 ----sR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVs 1070 (1228)
T KOG0055|consen 999 ----TR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVS 1070 (1228)
T ss_pred ----CC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceec
Confidence 22 4467999999999999999999999999999999999999998 9999999999998876 58899999
Q ss_pred CCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
|+|.+|. .|+||||.|+. .. -..+.+.++++....+++ +.+|++++
T Consensus 1071 QEP~LF~-~TIrENI~YG~--~~--vs~~eIi~Aak~ANaH~F-----------------------------I~sLP~Gy 1116 (1228)
T KOG0055|consen 1071 QEPVLFN-GTIRENIAYGS--EE--VSEEEIIEAAKLANAHNF-----------------------------ISSLPQGY 1116 (1228)
T ss_pred cCchhhc-ccHHHHHhccC--CC--CCHHHHHHHHHHhhhHHH-----------------------------HhcCcCcc
Confidence 9997775 69999999982 11 233444555544433221 56899999
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
||.||+++. +||||||||++||||+++||+||||||.||+||+.+.+-+.+.|.+.. .++|+|+.. |+..+.+.+
T Consensus 1117 DT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIA--HRLSTIqna 1191 (1228)
T KOG0055|consen 1117 DTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIA--HRLSTIQNA 1191 (1228)
T ss_pred cCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEe--cchhhhhcC
Confidence 999999887 599999999999999999999999999999999999999999999864 345555543 467899999
Q ss_pred CeEEEEcCCeEEEEcChhHHHH
Q 001108 393 DDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
|.|+|+++|+|+++|++++++.
T Consensus 1192 D~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1192 DVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred CEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999976
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=362.12 Aligned_cols=202 Identities=27% Similarity=0.379 Sum_probs=176.9
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh--hcccceEEEeccCCCCCCCCC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~~T 957 (1156)
++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999876 568999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg 1037 (1156)
|+||+.|.+.++. ......++.++++++.++|.+..++.+ ..|||||||||+||+||+++|++|||||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998766542 233344567889999999988777764 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999878999999999987 57789999999986 689998874
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=344.21 Aligned_cols=207 Identities=23% Similarity=0.321 Sum_probs=175.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. +.+.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 568889888741 12469999999999999999999999999999999999866 46899999998753
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ..+++.++|++|++.+++.+||+||+.+....+. ...+..++.++++++.+++.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999999999999999998755432 223344567889999999988777653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999777999999999986 467789999999874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=362.07 Aligned_cols=257 Identities=21% Similarity=0.358 Sum_probs=215.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.|..-.-+|++++++++++| +.+......+..++..|.|+||++.+++
T Consensus 502 iQ~nfiDmEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p--------------------------- 549 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYDP--------------------------- 549 (790)
T ss_pred HHHhhhhHHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecCC---------------------------
Confidence 45556668899999999998 8887777888889999999999999863
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc---CccceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---VPQRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~---~~~~~~~yv~Q~ 234 (1156)
.+++|+||||++.||+.+||+||||+||||++++|.++++.+ +|.|++||++++.. ..++.||.||||
T Consensus 550 ------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 550 ------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred ------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 245999999999999999999999999999999999999988 99999999998653 346789999996
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
..+| +.|+..||.|+. ++...|.+.++++... +.| ++++++++++|
T Consensus 621 tvLF-NdTI~yNIryak----~~AsneevyaAAkAA~--------------------------IHd---rIl~fPegY~t 666 (790)
T KOG0056|consen 621 TVLF-NDTILYNIRYAK----PSASNEEVYAAAKAAQ--------------------------IHD---RILQFPEGYNT 666 (790)
T ss_pred ceee-cceeeeheeecC----CCCChHHHHHHHHHhh--------------------------HHH---HHhcCchhhhh
Confidence 6555 569999999874 3333333333332211 112 37899999999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
+||+++.+ |||||||||+|||+++..|.+++|||.||+||..+.++|..+|.+++. ++|+|+.. |+..+.-.+|.
T Consensus 667 ~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA--HRLSTivnAD~ 741 (790)
T KOG0056|consen 667 RVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA--HRLSTIVNADL 741 (790)
T ss_pred hhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe--eeehheecccE
Confidence 99999997 999999999999999999999999999999999999999999999874 44555433 45667778999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|+++++|+|++.|.++|++.
T Consensus 742 ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999875
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=364.17 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=186.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.+. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67888887763 2469999999999999999999999999999999999876 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.+|||+|++.++|.+||+||+.|+...+.. ...+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 3 22346799999999999999999999998654211 12344556678899999999998887763 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|+|++||+++ ++...+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 58889999999986 69999987
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 5
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=358.88 Aligned_cols=214 Identities=27% Similarity=0.373 Sum_probs=183.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 477889988774 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Ch--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
.. ...++.+||++|++.+++.+||+||+.+.+..+. .+.++..+.++++++.++|.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 2245679999999999999999999987654331 233344456788999999988777664 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999987 57788999999986 68999887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 4
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=342.25 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=179.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++... ..+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~~---------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGGG---------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCCC---------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 5678877764110 11469999999999999999999999999999999999865 468999999987642
Q ss_pred hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 001108 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 1016 (1156)
Q Consensus 937 ~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl 1016 (1156)
.++.++|++|++.+++.+|++||+.+....+. ...+...+.++++++.++|.+..++.+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 34579999999988888999999988754432 223344567889999999987766653 46999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCC
Q 001108 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1093 (1156)
Q Consensus 1017 ~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~-Gg~~~~~g~~ 1093 (1156)
+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.||++++|++ .|+++..++.
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999864 4899999999986 47788999999985 4788877653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=330.62 Aligned_cols=234 Identities=24% Similarity=0.412 Sum_probs=200.7
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCH
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
+++.+++||||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.++.+.. ..++||.|.+..+++.+||
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhh-hhhcccChhhhccCccCcH
Confidence 56789999999999999999999999999999999999887 56899999999987643 4568999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
.|.|.|.|.++ .++.++.++.+...|+.+++.....+. +..||.|++|++.+-.+++++|++|+||||+|||
T Consensus 90 ~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 90 EDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred HHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99999999987 456777888899999999999988877 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC-------C-----cchhHHHHHHh
Q 001108 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG-------R-----HSCHLISYFEA 1106 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~-------~-----~~~~~~~~f~~ 1106 (1156)
||.+.+.+.+.+.++.+.|.|||+++|+++ .+.++||++++|++ |+.|..|+.. + .+..-.+....
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~~ir~~~Gkk~~~ies~~s~eeL~~ 239 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELAN 239 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHHHHHHhcCCceEEEeccCchHHHhc
Confidence 999999999999999999999999999997 58899999999986 6888888752 1 12222344677
Q ss_pred CCCcccCCCCCCCccEEEEE
Q 001108 1107 IPGVQKIKDGYNPATWMLEV 1126 (1156)
Q Consensus 1107 ~~g~~~~~~~~np~~~~l~~ 1126 (1156)
+||+.++..... ..|.+.+
T Consensus 240 ipgi~~~~~~~~-G~~~i~i 258 (300)
T COG4152 240 IPGILKITETKD-GSWRIQI 258 (300)
T ss_pred CCCceeeeeccC-CceEeec
Confidence 888876654222 3344444
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=330.83 Aligned_cols=205 Identities=27% Similarity=0.333 Sum_probs=177.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCC--CCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHD--NHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d--~~~~ 239 (1156)
++|+|||+++.+||.++|+|+||||||||+++|+|+.+|+ +|+|.++|.+..... ..+.+-+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999998 999999998765542 357799999996 5789
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
..||++.|.-+.+..+... ...++.++|+.+||+... -++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~----l~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSF----LDR 137 (252)
T ss_pred chhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHH----Hhc
Confidence 9999999987765433211 112256789999998643 245
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+|||||+.+|++|++|||||+||++.+.+|++.|.++.+ ..+.+++.++|+..-+..+||||+||+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheeeee
Confidence 6778999999999999999999999999999999999999999999998865 456677779999999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999998865
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=339.63 Aligned_cols=210 Identities=25% Similarity=0.422 Sum_probs=177.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchh
Confidence 35678887763 2469999999999999999999999999999999999865 46899999998765
Q ss_pred hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..++.++|++|++.+++.+|++||+.+....+. .......+.+.++++.+++.+..+.. +.+||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHH
Confidence 3 345679999999998889999999988655432 22334456788999999998776665 35699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999998877999999999986 46778999999986 5776653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=342.34 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=180.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC----CcCccceEEEEcCCC-CCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFVPQRTAAYISQHD-NHIG 239 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1156)
..+|+|+|+.+++|+.++|+||||||||||+++|+|++.|+ +|+|.++|.++. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 45999999999999999999999999999999999999998 899999999865 233468899999995 5688
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.-||.|.++|+....+... ++...+++.+++.+||.+.++.
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r----- 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDR----- 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccC-----
Confidence 8899999999987765421 1123467889999999988764
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.. .++.+||.++|+...+..++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 4457999999999999999999999999999999999999999999999876 444556668899999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=341.49 Aligned_cols=213 Identities=29% Similarity=0.380 Sum_probs=180.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecC
Confidence 35678887763 2469999999999999999999999999999999999865 46899999997653
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.++|.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2234579999999999899999999998755432 223344567889999999987777653 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999998876 899999999987 57788999999986 68888776
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 3
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=363.77 Aligned_cols=214 Identities=22% Similarity=0.323 Sum_probs=187.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.+. ++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999998874 2468999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ...+|.+|||+|++.++|.+||+||+.|+...+. .+..+.++.++++++.++|.++.++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 2235679999999999999999999999865432 334455667899999999998888764 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||++||++. ++...+|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 999999999986 68889999999986 79999987
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 4
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=344.10 Aligned_cols=206 Identities=30% Similarity=0.391 Sum_probs=172.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 4999999999999999999999999999999999999998 999999998875432 2457999999998899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++......... .+....++.+++.+||.+..++.+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (235)
T cd03261 91 SLTVFENVAFPLREHTRLSE---------------------------------EEIREIVLEKLEAVGLRGAEDLYP--- 134 (235)
T ss_pred CCcHHHHHHHHHhhccCCCH---------------------------------HHHHHHHHHHHHHcCCchhhcCCh---
Confidence 99999999987532110000 001123566788999987666555
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.++..+++.|++++... +++|+.++|+..++.++||+|++|+
T Consensus 135 --~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d~v~~l~ 211 (235)
T cd03261 135 --AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADRIAVLY 211 (235)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhcCEEEEEE
Confidence 4699999999999999999999999999999999999999999999876532 4455567888889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (235)
T cd03261 212 DGKIVAEGTPEELR 225 (235)
T ss_pred CCeEEEecCHHHHc
Confidence 99999999988753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=361.27 Aligned_cols=209 Identities=28% Similarity=0.392 Sum_probs=177.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|+++|+++....+ ++.++||+|++.+++.+||+
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998865443 36799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+........ ...+....++.+++.+||++..|..+ ..|
T Consensus 93 eni~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 137 (353)
T PRK10851 93 DNIAFGLTVLPRRERP------------------------------NAAAIKAKVTQLLEMVQLAHLADRYP-----AQL 137 (353)
T ss_pred HHHHhhhhhcccccCC------------------------------CHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 9999986532100000 00011235678899999987766544 569
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ..+.+++.++|+..++..++|+|++|++|+++
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998765 33455666889999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
+.|+++++.
T Consensus 217 ~~g~~~~i~ 225 (353)
T PRK10851 217 QAGTPDQVW 225 (353)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=361.69 Aligned_cols=217 Identities=22% Similarity=0.294 Sum_probs=184.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++.. ..++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788998887411 013579999999999999999999999999999999999876 46899999998764
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ..++.+||++|++.+++.+||+||+.+....+. .+.++.++.++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 235679999999999999999999998765432 233445567889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999987 47788999999986 7899
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 98874
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=339.54 Aligned_cols=211 Identities=26% Similarity=0.390 Sum_probs=177.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 35778887764 2468999999999999999999999999999999999865 46899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.++|++|++.+++..|++||+.+....+. ...++.++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 31 223579999999988888999999988654331 223344567888999999987777653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999764 899999999986 47788999999986 6777765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=317.13 Aligned_cols=200 Identities=27% Similarity=0.397 Sum_probs=175.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1156)
..+|+||||.|++||++.|+||||||||||||+|.+...|+ +|+|.+||+++.... .+|+||+|+||.-++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 45999999999999999999999999999999999999999 999999999986543 258999999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+..||.||++|+.+..|... .+.+.++.++|+..||.+.++.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~---- 133 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARA---- 133 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhc----
Confidence 99999999999988776422 1234567889999999988764
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.+..|||||||||+||||++.+|++|+.||||-.||+..+.+|++.+.++-+ .+|+|+..+|+..-+..+--+++.|
T Consensus 134 -lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 134 -LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred -CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 4557999999999999999999999999999999999999999999998754 3566666788888888888899999
Q ss_pred cCCeEEEEcC
Q 001108 399 SDGQIVYQGP 408 (1156)
Q Consensus 399 ~~G~iv~~G~ 408 (1156)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=361.26 Aligned_cols=207 Identities=21% Similarity=0.310 Sum_probs=178.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45999999999999999999999999999999999999998 9999999999876543 4689999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++++||+||+.|+.+..+... .+...++.++++.+||+...++.+
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p- 127 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP- 127 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh-
Confidence 999999999999875543211 011234677899999987766554
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +.+|+.++|+..++..++|+|++
T Consensus 128 ----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~-~~Tii~vTHd~~ea~~~~drI~v 202 (363)
T TIGR01186 128 ----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL-QKTIVFITHDLDEAIRIGDRIVI 202 (363)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999875533 44556688999999999999999
Q ss_pred EcCCeEEEEcChhHHHH
Q 001108 398 LSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1156)
|.+|+++..|+++++..
T Consensus 203 l~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 203 MKAGEIVQVGTPDEILR 219 (363)
T ss_pred EeCCEEEeeCCHHHHHh
Confidence 99999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=355.74 Aligned_cols=212 Identities=23% Similarity=0.364 Sum_probs=184.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+|+||+|++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888888773 3569999999999999999999999999999999999876 56899999998764
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.+||++|++.+++.+||.||+.|.+.++. .+.++..+.++++++.++|.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998776542 223444566889999999998887764 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||++||+||+++|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999987 58889999999986 799999885
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=344.08 Aligned_cols=215 Identities=26% Similarity=0.354 Sum_probs=179.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 5678877763 2469999999999999999999999999999999999875 468999999987643
Q ss_pred h---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCC-------CChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 937 E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-------VDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 937 ~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
. . .++.++|++|++.+++.+||+||+.+......... .......+.++++++.+++.+..+.. +
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----A 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----h
Confidence 1 1 23468999999999999999999988754332110 01234455688999999998776665 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999878999999999987 47788999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 88888764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=361.82 Aligned_cols=205 Identities=25% Similarity=0.340 Sum_probs=177.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.+|||+|+..+|+++||+
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998865443 47899999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+....++++++.+||.+..+.. +.+|
T Consensus 110 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~-----~~~L 150 (377)
T PRK11607 110 QNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRK-----PHQL 150 (377)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 99999875432110 01123467789999998766654 4579
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.+.. +.+++.++|+..++..++|+|++|++|+++
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999998876544 455666889999999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 230 ~~g~~~~~~ 238 (377)
T PRK11607 230 QIGEPEEIY 238 (377)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=325.61 Aligned_cols=206 Identities=24% Similarity=0.411 Sum_probs=172.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1156)
.++|++||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|.+++...+. +-++||||....|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 56999999999999999999999999999999999999987 99999999999887663 569999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcC-Cccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1156)
|||+|||..++..... .. . ...+ .|.+.+.|= |.+-.+..-|
T Consensus 93 LTVeENL~~g~~~~~~-~~----------~------~~~~------------------~e~v~~lFP~Lker~~~~aG-- 135 (237)
T COG0410 93 LTVEENLLLGAYARRD-KE----------A------QERD------------------LEEVYELFPRLKERRNQRAG-- 135 (237)
T ss_pred CcHHHHHhhhhhcccc-cc----------c------cccc------------------HHHHHHHChhHHHHhcCccc--
Confidence 9999999987643211 00 0 0000 222333332 3333444444
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||.++|||||+++|++|+|||||.||-|.-..+|++.++++.+ ..+.+|+.+.|+...+.+++|+.++|.
T Consensus 136 ---~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~-~~g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 136 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK-EGGMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred ---CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHH-cCCcEEEEEeccHHHHHHhhCEEEEEe
Confidence 5999999999999999999999999999999999999999999999875 345677779999999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|+|++.|+.+++..
T Consensus 212 ~Griv~~G~~~eL~~ 226 (237)
T COG0410 212 NGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999998854
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=329.66 Aligned_cols=217 Identities=26% Similarity=0.343 Sum_probs=180.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++.+|++..++.... ...+|+||||+|.+||++||+|+||||||||.++|+|... +..|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~~---------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGKF---------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCcc---------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 3678888877753321 1259999999999999999999999999999999999887 5689999999775
Q ss_pred Chh----cccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 001108 935 KQE----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~ 1007 (1156)
... .+.+.+.+|+|++. +.|..||++.|.=..... ..++. .+++.++++.+||.+- .++. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 432 46778999999985 568899999887654431 22222 3338999999999763 3443 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||+||||||+.+|++|+||||||+||+..+..|++++.++.++ |.|+|+++||.+. +...|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999754 8899999999875 7789999999997 69
Q ss_pred EEEecCCC
Q 001108 1087 EIYVGPLG 1094 (1156)
Q Consensus 1087 ~~~~g~~~ 1094 (1156)
++..++.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999853
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=363.51 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=185.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++++. ++.+|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377889988773 2469999999999999999999999999999999999876 5689999999876
Q ss_pred Chh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
... ..++.+||++|+..+++.+||+||+.|+...+. .+.++.++.++++++.++|.+..++.+ .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 431 234679999999999999999999998765432 233455667899999999988777764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++ ++.+.||++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999986 57889999999986 78999887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 4
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=340.51 Aligned_cols=215 Identities=27% Similarity=0.409 Sum_probs=179.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ....+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~---------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDVK---------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCCC---------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 56788888774210 11269999999999999999999999999999999999865 46899999998764
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ..+++.+||++|++.+++.+||+||+.+....+. ....+..+.++++++.+++.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 2345679999999988898999999988654432 233445567889999999987777653 56999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999986 5776543
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=364.57 Aligned_cols=218 Identities=26% Similarity=0.358 Sum_probs=185.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+ ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 377889988773 3579999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.+||++|++.+++.+||+||+.++...+.. .....+..++.++++++.+++.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 34567799999999998999999999886432110 01112334567899999999998887764 57999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++|||||+++|+||||||||+|||+.++..++++|++++++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 57789999999986 689999
Q ss_pred cCCC
Q 001108 1091 GPLG 1094 (1156)
Q Consensus 1091 g~~~ 1094 (1156)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9853
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=343.11 Aligned_cols=216 Identities=27% Similarity=0.393 Sum_probs=180.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 67889988874 2469999999999999999999999999999999999865 46899999998754
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ..++.++|++|++.+++.+||+||+.+....+... ........+.++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 32 22456999999999888899999998875432110 0122334456788999999987766653 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecC
Confidence 9999999999999999999999999999999999999999765 899999999986 47788999999986 68888887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=342.57 Aligned_cols=213 Identities=26% Similarity=0.365 Sum_probs=179.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 35678887763 2469999999999999999999999999999999999876 46899999998753
Q ss_pred hh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.. . .++.++|++|++.+++.+||+||+.+....+. .......+.++++++.+++.+..+.. +..||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHH
Confidence 21 1 23468999999999999999999988654332 22334455678899999998776665 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 215 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEG 215 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEe
Confidence 999999999999999999999999999999999999999999877999999999987 58889999999986 6888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 216 ~~ 217 (232)
T cd03218 216 TP 217 (232)
T ss_pred CH
Confidence 74
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=360.47 Aligned_cols=203 Identities=25% Similarity=0.302 Sum_probs=178.1
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cc----cceEEEeccCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDI 951 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~q~~~ 951 (1156)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... .+ ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34679999999999999999999999999999999999876 5689999999876531 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
+++.+||+||+.|...+. ..+.++..+++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 2344556778899999999988777764 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||||++||+.++..+++.++++.++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 9999999999999999999998754 899999999986 57889999999985 699999974
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=360.88 Aligned_cols=214 Identities=24% Similarity=0.363 Sum_probs=187.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++..+. +..+|+|+||+|++||+++|+|||||||||||++|+|... +..|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588999988763 2468999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ...+|.+|||+|++.++|.+||.||+.|+...+ ..+..+.++++.++++.++|.++.++.+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234578999999999999999999999986543 2344556678899999999998887763 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ .|.|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 68899999999986 69999998
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=347.67 Aligned_cols=206 Identities=20% Similarity=0.225 Sum_probs=154.2
Q ss_pred CCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc
Q 001108 851 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930 (1156)
Q Consensus 851 ~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~ 930 (1156)
+.|..+.+.+|.+.|+.. .-+++.+++.+++.-...+++|+||+||||+++++.|..+ +..|-+.+.
T Consensus 358 ~~~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~ 424 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRH 424 (582)
T ss_pred CCCCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeec
Confidence 345578888888777521 1258899999999999999999999999999999998654 356766654
Q ss_pred CccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 931 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 931 g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
+ +++++|..|...-+-.+.|.+- .+....+ +... ++.+++-+..+||..-.-. .+ +.+|||
T Consensus 425 ~--------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~----~ee~r~hl~~~Gl~g~la~---~s-i~~LSG 485 (582)
T KOG0062|consen 425 P--------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKT----EEEIRRHLGSFGLSGELAL---QS-IASLSG 485 (582)
T ss_pred c--------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCC----HHHHHHHHHhcCCCchhhh---cc-ccccCC
Confidence 3 3458898887554434444332 2222222 2222 3346677888898753221 11 467999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..||++||+.++ +-..|+++++.++|...-..
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ie 561 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIE 561 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeee
Confidence 9999999999999999999999999999999999999999875 4589999999875 77889999999987655555
Q ss_pred cC
Q 001108 1091 GP 1092 (1156)
Q Consensus 1091 g~ 1092 (1156)
|.
T Consensus 562 g~ 563 (582)
T KOG0062|consen 562 GG 563 (582)
T ss_pred cc
Confidence 54
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=376.92 Aligned_cols=217 Identities=28% Similarity=0.433 Sum_probs=180.9
Q ss_pred cCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEE
Q 001108 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 928 (1156)
Q Consensus 849 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~ 928 (1156)
.|.-++.++|+||+|.|+.. +..+|+|+|++|+|||.+||+|+||||||||+|+|.|+.. +..|+|.
T Consensus 465 ~~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 34455689999999999632 2369999999999999999999999999999999999877 5789999
Q ss_pred EcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------ccc
Q 001108 929 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQS 998 (1156)
Q Consensus 929 i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~ 998 (1156)
+||+++++ ..+++++|||+|++.++. -|++||+.++. ++.+. +.+.++++..+..+. .++
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATD----EEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCH----HHHHHHHHHhCcHHHHHhccccccc
Confidence 99998654 568899999999998864 69999998752 33332 234455555554432 344
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 999 ~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
.+|+. ..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|.+.. +|+|+|+++|+++ .++.||++
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 55554 46899999999999999999999999999999999999999999999985 5899999999986 57899999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |+++..|+.
T Consensus 678 iVl~~-Gkiv~~gs~ 691 (709)
T COG2274 678 IVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEccC-CceeccCCH
Confidence 99986 799999984
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=340.13 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=173.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ..+.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 35778887774110 01469999999999999999999999999999999999875 56899999998754
Q ss_pred hh-------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 936 QE-------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 936 ~~-------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
.. ..++.++|++|++.+++.+||+||+.+....+. ......++.++++++.++|.+..++.+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 21 124579999999999999999999998765432 222334567889999999987776653 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||++||+++. + +.||++++|++|
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G 216 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDG 216 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCC
Confidence 99999999999999999999999999999999999999999999976 58999999999863 4 489999999875
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=391.41 Aligned_cols=255 Identities=27% Similarity=0.423 Sum_probs=204.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.+......||+.+++++.++ +++.... ...+..+++|+|+++.++.
T Consensus 295 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~f~~vsf~y~~--------------------------- 340 (567)
T COG1132 295 LQRASAAAERLFELLDEEPE-----VEDPPDP--LKDTIGSIEFENVSFSYPG--------------------------- 340 (567)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCCCC--CCCCCCeEEEEEEEEEcCC---------------------------
Confidence 56778888999999888655 3332222 3445677999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
++++|+|+|++++||+.+||+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 341 ------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 341 ------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred ------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEccc
Confidence 234999999999999999999999999999999999999998 9999999999887654 5789999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+|. .||+|||.++..- ...+.+.++++... .+.. +..|++++||
T Consensus 412 ~~LF~-~TI~~NI~~g~~~----at~eei~~a~k~a~---------------------------~~d~--I~~lp~g~dt 457 (567)
T COG1132 412 PLLFS-GTIRENIALGRPD----ATDEEIEEALKLAN---------------------------AHEF--IANLPDGYDT 457 (567)
T ss_pred ceeec-ccHHHHHhcCCCC----CCHHHHHHHHHHhC---------------------------hHHH--HHhCcccccc
Confidence 66665 8999999998521 12233444433321 1112 2345889999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+++. .||||||||++||||++.+|+||+||||||+||+.+...|.+.++++. .++|+++ +.|.. .+...+|+
T Consensus 458 ~vge~G~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRl-sti~~aD~ 532 (567)
T COG1132 458 IVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRL-STIKNADR 532 (567)
T ss_pred eecCCCc-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccH-hHHHhCCE
Confidence 9997655 599999999999999999999999999999999999999999998764 3457766 55554 45555999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|++++++.
T Consensus 533 IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 533 IIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999999876
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=336.82 Aligned_cols=207 Identities=30% Similarity=0.401 Sum_probs=175.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCccc
Confidence 35678887763 2469999999999999999999999999999999999875 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ...++.++|++|++.+++.+||+||+.+....+. . .++.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 3 2334579999999988889999999988754331 1 1345788999999988777653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998877999999999986 46778999999986 6777654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=361.34 Aligned_cols=205 Identities=26% Similarity=0.387 Sum_probs=175.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998765433 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+... .+....++.+++.+||++..+..+ ..|
T Consensus 94 eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~L 134 (369)
T PRK11000 94 ENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KAL 134 (369)
T ss_pred HHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hhC
Confidence 99999865432110 001224677899999987776555 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++
T Consensus 135 SgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533 445566788889999999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|+++++.
T Consensus 214 ~~g~~~~i~ 222 (369)
T PRK11000 214 QVGKPLELY 222 (369)
T ss_pred EEcCHHHHH
Confidence 999998874
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=312.04 Aligned_cols=210 Identities=25% Similarity=0.334 Sum_probs=180.2
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
..++|.|+|..- ==..+++|++||++||+||||||||||||+|+|... +.+|.|+|||.+...
T Consensus 3 ~L~~V~~~y~~~---------------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~ 65 (231)
T COG3840 3 ALDDVRFSYGHL---------------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTA 65 (231)
T ss_pred cccceEEeeCcc---------------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCc
Confidence 456777777532 135678899999999999999999999999999887 568999999988654
Q ss_pred h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ...|=++.++|+.++|..+||.+|+-++..-.+ .. ..+.++.++.++..+||.++.+++. .+||||||||
T Consensus 66 ~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQR 137 (231)
T COG3840 66 SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQR 137 (231)
T ss_pred CCcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHH
Confidence 3 345668999999999999999999988743211 11 2445677999999999999999884 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+++||+|+++-+||+||||+|.|||.-+..+..++.++++ ++.|++++||+|+ |.....|+++++++ |++.|.|+.
T Consensus 138 vALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 138 VALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 9999999999999999999999999999999999999975 4899999999998 79999999999997 799999984
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=311.57 Aligned_cols=201 Identities=24% Similarity=0.379 Sum_probs=173.2
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
.+++.|++||++||+||||||||||||+|+|+..|. +|+|.+||++.....| +|-++.++|+.++|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478899999999999999999999999999999998 9999999999877665 478999999999999999999999
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
++.. ++-+- . . +.+..++.++...||..+.+..- .+|||||
T Consensus 94 LGl~---P~LkL---~-a---------------------------~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKL---N-A---------------------------EQREKVEAAAAQVGLAGFLKRLP-----GELSGGQ 134 (231)
T ss_pred ccCC---ccccc---C-H---------------------------HHHHHHHHHHHHhChhhHhhhCc-----cccCchH
Confidence 8753 22110 0 0 11234677889999998877554 4699999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcC
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1156)
||||++||+|+++-+|++||||+|+|||.-+.++...+.+++...+.|+++ ++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm-VTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM-VTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999998765555555 6666789999999999999999999999
Q ss_pred hhHHH
Q 001108 409 RELVL 413 (1156)
Q Consensus 409 ~~~~~ 413 (1156)
.+++.
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=389.80 Aligned_cols=255 Identities=23% Similarity=0.340 Sum_probs=194.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCC-CcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL-PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
.++.....+|+.++++.+++. ........+. ...+|+|+||++.+..
T Consensus 314 ~~~~~~~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~i~~~~vsf~~~~-------------------------- 361 (588)
T PRK11174 314 KAQAVGAAESLVTFLETPLAH------PQQGEKELASNDPVTIEAEDLEILSPD-------------------------- 361 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcc------cCCCccccCCCCCceEEEEeeEEeccC--------------------------
Confidence 467778888888888765431 0000111111 1347999999976421
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
.+++|+|+|++++||+.++|+||||||||||+++|+|++ |+ +|+|.+||+++++... ++.++||+|
T Consensus 362 -------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 430 (588)
T PRK11174 362 -------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQ 430 (588)
T ss_pred -------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecC
Confidence 124899999999999999999999999999999999999 87 9999999999887654 578999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
++.+| +.||+|||.++.. ....+.+.++++... .+.. +-.|+++.|
T Consensus 431 ~~~LF-~~TI~eNI~~g~~----~~~~eei~~al~~a~---------------------------l~~~--i~~lp~G~d 476 (588)
T PRK11174 431 NPQLP-HGTLRDNVLLGNP----DASDEQLQQALENAW---------------------------VSEF--LPLLPQGLD 476 (588)
T ss_pred CCcCC-CcCHHHHhhcCCC----CCCHHHHHHHHHHhC---------------------------HHHH--HHhcccccc
Confidence 77555 5799999998631 112222233222211 1111 234788899
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.||+++. .||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++. .++|+|+.. |.. ++...||
T Consensus 477 T~vge~G~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiIt-Hrl-~~i~~aD 551 (588)
T PRK11174 477 TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVT-HQL-EDLAQWD 551 (588)
T ss_pred cccccCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEe-cCh-HHHHhCC
Confidence 99998765 699999999999999999999999999999999999999999998763 355666544 443 5678899
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001108 394 DIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|++|++|++++.|+++++++
T Consensus 552 ~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 552 QIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEEEeCCeEeecCCHHHHHh
Confidence 999999999999999999864
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=337.50 Aligned_cols=206 Identities=25% Similarity=0.341 Sum_probs=174.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788887763 12469999999999999999999999999999999999865 46899999998764
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. .+++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..+..+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999998889999999998754331 223344567889999999987666553 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 577789999999865
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=340.04 Aligned_cols=214 Identities=23% Similarity=0.285 Sum_probs=177.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC-----CCCeEEEEEEEc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITIS 930 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~-----~~~~~~G~i~i~ 930 (1156)
++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|.. . +.+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEEC
Confidence 35678877763 236999999999999999999999999999999999986 4 568999999
Q ss_pred CccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
|.++.. ..+++.+||++|++.++ .+||+||+.+....+.. ....+.++.++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987532 23456799999998887 79999999887544321 1122245668899999999876555421 2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.+||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||+++ ++.+.||++++|++ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G 216 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-G 216 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999877 99999999986 47788999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 217 ~i~~~g~~ 224 (227)
T cd03260 217 RLVEFGPT 224 (227)
T ss_pred EEEEecCc
Confidence 88888864
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=336.93 Aligned_cols=191 Identities=28% Similarity=0.373 Sum_probs=163.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCC-CCCCCHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH-SPFVTIY 959 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~-~~~~Tv~ 959 (1156)
+.+|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.++|.+......++.+||++|++.. +..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 468999999999999999999999999999999999876 5689999999876544455679999999742 3467999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD 1039 (1156)
||+.+...... . ..+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-----A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-----c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987643221 1 1245788999999988777663 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1040 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i 204 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAI 204 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999777999999999986 46778999999986 454
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=341.13 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=181.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++.. .+...+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678888776410 001369999999999999999999999999999999999876 46899999998764
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 234679999999999999999999988654332 23334456788999999998777665 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 47788999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=356.33 Aligned_cols=206 Identities=27% Similarity=0.375 Sum_probs=175.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1156)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 45999999999999999999999999999999999999998 9999999998765432 35799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.|+....+... .+....++.+++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998765432110 001124567889999987776654
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999987653 3455666788889999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998774
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=343.17 Aligned_cols=216 Identities=26% Similarity=0.309 Sum_probs=177.4
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|++++++. ++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 56778777631 1469999999999999999999999999999999999865 468999999987542
Q ss_pred ------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhh-----CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 937 ------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
...++.++|++|++.+++.+||+||+.+..... ...........+.+.++++.++|.+..+.. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 224567999999999888999999998753210 000111123345678899999998766655 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++||+||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999987 47779999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 688888874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=340.63 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=181.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788887763 2469999999999999999999999999999999999865 56899999998764
Q ss_pred h-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 936 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
. ...++.++|++|++.+++.+||+||+.+...... .......++.+.++++.++|.+..+.. +..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2335679999999988889999999987642111 123344456788999999998777665 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999987 46778999999986 688998
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 874
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=349.59 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=180.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+... ...+.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67899988874210 012469999999999999999999999999999999999876 56899999998764
Q ss_pred h-----hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCCCCCC
Q 001108 936 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSG 1007 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~~~~~~~~ 1007 (1156)
. ...++.+|||+|++. .+...||+||+.|..... ..+.++..+.++++++.++|. +..++. +..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 234567999999874 233579999999865432 234455667789999999996 555554 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++||+||+.+|++|||||||+|||+.++..++++|++++++ |+|||++||+++ ++.+.||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 46788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 8888874
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=337.45 Aligned_cols=221 Identities=35% Similarity=0.603 Sum_probs=180.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC-CCeEEEEEEEcCccC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPK 934 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~g~~~ 934 (1156)
+.|+|++|.++... ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +++.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 45788888874210 13579999999999999999999999999999999999764 124689999999877
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHH-HHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.....++.++|++|++.+++.+||+||+.|..................+++ .++.+++.+..++. +..||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544556779999999999999999999998765432221122222334555 88999988776654 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++..++.+.||++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777999999999984358899999999986 6887764
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=336.15 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=173.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
.++|+++.++ +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 5678887763 12469999999999999999999999999999999999865 468999999987532
Q ss_pred ------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 937 ------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
...++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..+..+ .+|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1245679999999999999999999998754432 233444567889999999987766653 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. .+.+.||++++|++|
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998777999999999986 466789999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=337.61 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=179.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++... ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~~---------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEGS---------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCCC---------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 378899998874210 11469999999999999999999999999999999999875 5689999999876
Q ss_pred Chhc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 935 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~~------~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
.... + ++.+||++|++.+++.+|++||+.+....+. ...++.++.++++++.++|.+..+.. +..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4311 1 2569999999988889999999998654321 22334456788999999998776665 356
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++||+||+.+|+||||||||+|||+.++..+++.|+++.+ +|+|||++||+++. + +.+|++++|.+ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 58999999999863 4 45689999975 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|++
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 8888875
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=354.88 Aligned_cols=205 Identities=27% Similarity=0.392 Sum_probs=176.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+||||+|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+||
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875432 24679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|.....+... .+....++.+++.+||++..++.++ .
T Consensus 132 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~-----~ 172 (340)
T PRK13536 132 RENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS-----D 172 (340)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----h
Confidence 999997654432110 0011234567889999988887765 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++.. . +++|+.++|+..++.++||+|++|++|++
T Consensus 173 LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~i 250 (340)
T PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGRK 250 (340)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 3 44566678899999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
+++|+++++..
T Consensus 251 ~~~g~~~~l~~ 261 (340)
T PRK13536 251 IAEGRPHALID 261 (340)
T ss_pred EEEcCHHHHHh
Confidence 99999998865
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=340.71 Aligned_cols=213 Identities=27% Similarity=0.374 Sum_probs=179.2
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|++++++. .+.+|+|+||+|++|+++||+||||||||||+++|+|... +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 56788877641 1458999999999999999999999999999999999876 468999999987542
Q ss_pred ---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHH
Q 001108 937 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 937 ---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~~~~~~~~LSgG 1011 (1156)
...++.++|++|++.+++.+||+||+.+...++. .+.+...+.+.++++.+++.+ ..+.. +..||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 2345578999999999999999999988654431 233444567889999999985 55554 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999764 899999999986 47788999999986 688888
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=341.65 Aligned_cols=214 Identities=26% Similarity=0.359 Sum_probs=180.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67889988773 2469999999999999999999999999999999999865 46899999997653
Q ss_pred h-----------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001108 936 Q-----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1156)
Q Consensus 936 ~-----------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~ 1004 (1156)
. ...++.++|++|++.+++.+|++||+.+...... ....+...+.++++++.++|.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1234579999999988888999999987543211 122334456688999999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
+..||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999986 47788999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 688888874
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=347.05 Aligned_cols=218 Identities=27% Similarity=0.399 Sum_probs=177.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCC-CC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDN-HI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1156)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 35999999999999999999999999999999999999998 999999999886532 2467999999853 44
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc--ccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMV 316 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1156)
..+||+||+.|+....+.. + ++....++++++.+||+ +..|+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 140 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS-E---------------------------------EEIENRVKRAMNIVGLDYEDYKDK-- 140 (287)
T ss_pred ccccHHHHHHhHHHHCCCC-H---------------------------------HHHHHHHHHHHHHcCCCchhhccC--
Confidence 5689999999875432210 0 01123467789999996 44454
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.++.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++. .+++|+.++|+..++.++||+|+
T Consensus 141 ---~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 141 ---SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ---CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 34579999999999999999999999999999999999999999999988653 34556668888899999999999
Q ss_pred EEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001108 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1156)
+|++|++++.|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988753 23344555443
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=336.05 Aligned_cols=214 Identities=25% Similarity=0.391 Sum_probs=179.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. +.+.+|+||||++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 357788877631 11469999999999999999999999999999999999866 46899999998764
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ..+++.+||++|++.+++.+|++||+.+....+. .......+.++++++.++|.+..+..+ ..||+|||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999998889999999988754432 223334456889999999987766653 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||++||+||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ .+.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 699999999987 47778999999986 688888763
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=333.92 Aligned_cols=199 Identities=29% Similarity=0.442 Sum_probs=166.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998754332 45799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++....+... + +....++.+++.+||++..++.+ ..|
T Consensus 91 ~~l~~~~~~~~~~~------~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03259 91 ENIAFGLKLRGVPK------A----------------------------EIRARVRELLELVGLEGLLNRYP-----HEL 131 (213)
T ss_pred HHHHhHHHHcCCCH------H----------------------------HHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 99988653221100 0 01123566788999987766655 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++... +++|+.++|+..++.++||+|++|++|+++
T Consensus 132 SgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 132 SGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533 445556788888999999999999999998
Q ss_pred EEc
Q 001108 405 YQG 407 (1156)
Q Consensus 405 ~~G 407 (1156)
+.|
T Consensus 211 ~~g 213 (213)
T cd03259 211 QVG 213 (213)
T ss_pred ecC
Confidence 765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=345.91 Aligned_cols=203 Identities=25% Similarity=0.306 Sum_probs=173.1
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---c----ccceEEEeccCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 951 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~ 951 (1156)
+++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+.... . .++.+||++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999876 4689999999875421 1 2356999999999
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
+++.+||+||+.+...... .......+.++++++.++|.+..+..+ ..||||||||++||+||+.+|+||||
T Consensus 113 ~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9989999999988754321 223344566889999999988777664 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999986 47788999999986 688888874
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=340.75 Aligned_cols=212 Identities=27% Similarity=0.368 Sum_probs=179.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56788887763 2469999999999999999999999999999999999875 46899999998764
Q ss_pred hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..+.+||++|++.+++.+||+||+.+....+. ....+..+.+.++++.++|.+..+.. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 22358999999988888999999988654331 22334456788999999998776655 35799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecCC
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1093 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~-Gg~~~~~g~~ 1093 (1156)
++||+||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++ ++.+.||++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999987 57788999999985 5888887764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=336.76 Aligned_cols=211 Identities=28% Similarity=0.421 Sum_probs=175.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++|+++||+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35678877663 2469999999999999999999999999999999999876 46899999997754
Q ss_pred hh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCH
Q 001108 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..++.++|++|++.+++.+|++||+.+...... ....++.+.++++.+ ++.+..+.. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 21 124569999999999999999999988754331 122344567778887 466555554 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 47788999999986 688888
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=345.51 Aligned_cols=215 Identities=24% Similarity=0.328 Sum_probs=180.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 3788999888741 2359999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.+||++|++. .++..||.||+.|..... ..+....++.+.++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223467999999863 345689999998864322 2333444567889999999988777663 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||+||+.+|++|+|||||+|||+.++..++++|++++++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 46788999999986 688998
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=334.40 Aligned_cols=204 Identities=29% Similarity=0.378 Sum_probs=171.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 4999999999999999999999999999999999999998 999999998764321 23579999999888999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+... .+....++.+++.+||++..++.++ .
T Consensus 91 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 131 (220)
T cd03265 91 WENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK-----T 131 (220)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-----h
Confidence 999998754322100 0011245678999999877776554 6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.... +++|+.++|+..++.+++|+|++|.+|++
T Consensus 132 LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 210 (220)
T cd03265 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-GMTILLTTHYMEEAEQLCDRVAIIDHGRI 210 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999876532 44566688888999999999999999999
Q ss_pred EEEcChhHH
Q 001108 404 VYQGPRELV 412 (1156)
Q Consensus 404 v~~G~~~~~ 412 (1156)
++.|+++++
T Consensus 211 ~~~~~~~~~ 219 (220)
T cd03265 211 IAEGTPEEL 219 (220)
T ss_pred EEeCChHHc
Confidence 999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=347.99 Aligned_cols=218 Identities=26% Similarity=0.300 Sum_probs=180.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+.... ....+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~--------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKTP--------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCCc--------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 678999998852110 11359999999999999999999999999999999999876 46899999998763
Q ss_pred h-------hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 Q-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
. ..+++.+|||+|++. .+...||+||+.|+.... ..+.++.++.++++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999863 233479999999875432 233444556789999999996 555654 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++.++ |.|||++||+++ ++.+.||++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999764 999999999987 57789999999985 7
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 89999874
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=336.71 Aligned_cols=209 Identities=30% Similarity=0.407 Sum_probs=171.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 4999999999999999999999999999999999999988 9999999988754332 35799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+....+...+.. ..+....++.+++.+||.+..++.+ ..|
T Consensus 93 e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 137 (239)
T cd03296 93 DNVAFGLRVKPRSERPP------------------------------EAEIRAKVHELLKLVQLDWLADRYP-----AQL 137 (239)
T ss_pred HHHhhhhhhccccccCC------------------------------HHHHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 99998754321100000 0001123567788999987666554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++...+ ++||.++|+..++.+++|+|++|++|+++
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH-VTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999999998765334 44555777888899999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
+.|+++++.
T Consensus 217 ~~~~~~~~~ 225 (239)
T cd03296 217 QVGTPDEVY 225 (239)
T ss_pred EecCHHHHh
Confidence 999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=343.01 Aligned_cols=215 Identities=19% Similarity=0.290 Sum_probs=181.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478999988773 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Chh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
... ..++.++|++|++.+++.+||.||+.+...... ..+.+..++.+.++++.+++.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134569999999988889999999988643221 1223334456788999999988777653 569
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||++. ++.+.||++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 47788999999986 689
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 998875
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=326.70 Aligned_cols=221 Identities=29% Similarity=0.413 Sum_probs=188.0
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1156)
....+++|||+++++|++++|+||||||||||+|+|+|.++|+ +|+|.++|.+++...+. .-++--+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4567999999999999999999999999999999999999999 99999999999887764 4578889999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
++|||.||+..++..+.. ..... .. |. ...+..+...++..+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l---------~~-~~---------~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLL---------GR-PR---------ARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhh---------cc-cc---------chhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999998764421 00000 00 00 0001123345678899999999999998875
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+ .++++|+.|-|++.-++.+||||+||
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 999999999999999999999999999999999999999999999865 45677777999999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=351.14 Aligned_cols=206 Identities=28% Similarity=0.393 Sum_probs=176.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1156)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.+||++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999998875421 2457999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.|.+++.+.... +....++++++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKD----------------------------------EAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCChhHhCCchh-----
Confidence 99999987654431100 011245678999999987777664
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|+..++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998764 3 4556667888999999999999999999
Q ss_pred EEEEcChhHHHH
Q 001108 403 IVYQGPRELVLE 414 (1156)
Q Consensus 403 iv~~G~~~~~~~ 414 (1156)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=324.54 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=180.9
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh----cccceEEEeccCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSP 954 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~ 954 (1156)
+...+++||||++++||++||+||||||||||+|+|+|... +..|+|.++|.++... ..+.-++.-+|...+++
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 67889999999999999999999999999999999999877 5689999999986542 23345788899999999
Q ss_pred CCCHHHHHHHHHHhhC--------CCC-CChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001108 955 FVTIYESLLFSAWLRL--------SPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1025 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~--------~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~ 1025 (1156)
.|||.||+..++..+. +.. ...++..+++.++|+.++|.+.++...+ +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998755331 111 1235566788899999999999998855 5999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1026 p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
|++|+||||.+||.+.....+.+.|+++.+ .|.||+++-||++. ++.+|||+++|+. |+++..|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHH
Confidence 999999999999999999999999999987 47999999999986 8999999999986 6999999863
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=341.97 Aligned_cols=217 Identities=24% Similarity=0.281 Sum_probs=177.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ .++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 46778877763 12458999999999999999999999999999999999876 46899999998753
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhh-----CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~ 1004 (1156)
. ..+++.+||++|++.+++.+||+||+.+..... ..........++++.++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 123567999999998888999999997642110 000011223356688899999998776665
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998754 899999999987 46788999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 688888764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=348.41 Aligned_cols=218 Identities=25% Similarity=0.309 Sum_probs=180.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++... .....+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 67899999885210 011358999999999999999999999999999999999876 45799999886531
Q ss_pred ---------------------------hhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 001108 936 ---------------------------QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987 (1156)
Q Consensus 936 ---------------------------~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l 987 (1156)
....++.+|||+|++ ..+...||+||+.|+.... ..+.++.++++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999986 2334579999999875432 234455567789999
Q ss_pred HHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001108 988 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066 (1156)
Q Consensus 988 ~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1066 (1156)
+.++|. +..++. +..||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566655 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred CcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1067 PSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1067 ~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
++ ++.+.||++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 47789999999986 689999875
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=331.82 Aligned_cols=209 Identities=33% Similarity=0.481 Sum_probs=175.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ +..+|+|+||++++| ++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccc
Confidence 35778887763 246999999999999 999999999999999999999866 46899999998754
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ...++.++|++|++.+++.+||.||+.+....+. ...++..+.++++++.+++.+..+..+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2345679999999999999999999988765432 222334566889999999987766653 56999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ .+.+.+|++++|++ |++++.|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999976 599999999986 46678999999986 5777654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=371.11 Aligned_cols=222 Identities=27% Similarity=0.432 Sum_probs=184.6
Q ss_pred CCccC-CCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEE
Q 001108 846 GMVLP-FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 924 (1156)
Q Consensus 846 ~~~~~-~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~ 924 (1156)
|...| .-.+.++|+||+|.||..+ +.++|+|+||+|+|||.+|||||||+||||+.++|..... |.+
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--Pts 522 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTS 522 (716)
T ss_pred CccccccccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 43344 2456899999999998764 4679999999999999999999999999999999998766 678
Q ss_pred EEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHH-----HHHHHHHcCCCccc
Q 001108 925 GNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----IDEVMELVELNPLR 996 (1156)
Q Consensus 925 G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~-----v~~~l~~l~l~~~~ 996 (1156)
|.|.+||+|+++ ..+++++|+|.|+|.++. -||+|||.|+.. ..+.++.... +++.+ .++.+-.
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY 594 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGY 594 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCcccc
Confidence 999999999764 457789999999999986 599999999753 2333322211 22222 2455567
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 997 ~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
|+.+|+.| ..||||||||++|||||++||+||||||+||+||+++...|.++|.++.+ ++|||+++|+.| ..+.+|
T Consensus 595 ~T~VGEkG-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad 670 (716)
T KOG0058|consen 595 NTVVGEKG-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHAD 670 (716)
T ss_pred ccccCCcc-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--Hhhhcc
Confidence 88899876 47999999999999999999999999999999999999999999988864 699999999986 578899
Q ss_pred eEEEEecCcEEEEecC
Q 001108 1077 ELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1077 ~v~~l~~Gg~~~~~g~ 1092 (1156)
+|+++++ |+++..|.
T Consensus 671 ~Ivvi~~-G~V~E~G~ 685 (716)
T KOG0058|consen 671 QIVVIDK-GRVVEMGT 685 (716)
T ss_pred EEEEEcC-CeEEeccc
Confidence 9999986 79999985
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=332.59 Aligned_cols=205 Identities=24% Similarity=0.343 Sum_probs=173.4
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+++||++++|+++||+||||||||||+++|+|... +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 5678887764 2469999999999999999999999999999999999875 468999999987531
Q ss_pred -----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 937 -----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 937 -----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
...++.++|++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+..+.. +..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHH
Confidence 2345679999999999989999999988643111 122334456788899999998776665 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++|
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999986 477889999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=334.22 Aligned_cols=199 Identities=27% Similarity=0.421 Sum_probs=164.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCC--CCCCH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTI 958 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~~Tv 958 (1156)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ..++.++|++|++.+. ..+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999865 46899999998653 2456799999998764 33799
Q ss_pred HHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001108 959 YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1156)
Q Consensus 959 ~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg 1037 (1156)
+||+.+....... .....+..++.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00112234456889999999987666653 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999878999999999987 47788999999975 4 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=347.52 Aligned_cols=205 Identities=29% Similarity=0.411 Sum_probs=173.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 4999999999999999999999999999999999999998 999999998864321 24679999999888999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+.... +....++.+++.+||++..++.++ .
T Consensus 95 ~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~ll~~~~l~~~~~~~~~-----~ 135 (303)
T TIGR01288 95 RENLLVFGRYFGMSTR----------------------------------EIEAVIPSLLEFARLESKADVRVA-----L 135 (303)
T ss_pred HHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHCCChhHhcCchh-----h
Confidence 9999875433221000 011234567889999888777664 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++. . +++|+.++|+..++.++||+|++|++|++
T Consensus 136 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGRK 213 (303)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998764 3 45566678888999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++..
T Consensus 214 ~~~g~~~~~~~ 224 (303)
T TIGR01288 214 IAEGRPHALID 224 (303)
T ss_pred EEEcCHHHHHh
Confidence 99999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=345.68 Aligned_cols=217 Identities=25% Similarity=0.347 Sum_probs=180.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+... ...+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899999885210 011358999999999999999999999999999999999876 56899999998763
Q ss_pred h-------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 936 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
. ..+++.+|||+|++ .+++ .||.||+.|+.... ..+.++.++++.++++.++|. ++.+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23456799999986 3444 69999999875432 233455667789999999996 455554 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 47788999999986 7
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999875
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=345.63 Aligned_cols=218 Identities=24% Similarity=0.351 Sum_probs=175.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCC-
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDN- 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~- 236 (1156)
.++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 34999999999999999999999999999999999999998 99999999987531 12357999999852
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
.+...||+||+.|+....+... .+....++.+++.+||+ ...++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 4446799999998754322110 01112467789999996 445544
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++... .+++|+.++|+..++.++||+|
T Consensus 143 -----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 -----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 4569999999999999999999999999999999999999999999987653 3455666888899999999999
Q ss_pred EEEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001108 396 ILLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1156)
++|++|++++.|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999988742 33444554443
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=332.65 Aligned_cols=193 Identities=26% Similarity=0.380 Sum_probs=163.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCC-CCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDI-HSPFV 956 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~-~~~~~ 956 (1156)
+.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999865 468999999986532 234567999999974 35678
Q ss_pred CHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001108 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1156)
Q Consensus 957 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs 1036 (1156)
|++||+.+....+ .......++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865432 1222334456788999999987666653 5699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 467779999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=319.34 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=177.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++..| ++.++|++|||++++||+++|+|+|||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 5677777655 45789999999999999999999999999999999999876 45899999999875
Q ss_pred h----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCH
Q 001108 936 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSg 1010 (1156)
. ...++-++||||....||.+||+|||..++..+.. ++..+..++++.+.+- |.+.++... ..|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCCh
Confidence 4 23456799999999999999999999988765432 1111122566766663 455555553 36999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||.|+|||||+.+|++|+|||||.||-|.-.+.|.+.|+++.++ |.||+++-++... ..+.+||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 7799999998764 7789999999986 79999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 218 ~G~~ 221 (237)
T COG0410 218 SGTA 221 (237)
T ss_pred ecCH
Confidence 9985
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=344.52 Aligned_cols=215 Identities=27% Similarity=0.393 Sum_probs=181.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ +++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 588999998874 12459999999999999999999999999999999999876 5689999999876
Q ss_pred C-----hhcccceEEEeccCCCC-CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 K-----QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~-----~~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
. ...+++.+||++|++.. +...||+||+.+..... ..+.++..+.++++++.++|.+..+.. +..|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 12345679999999742 34579999998864332 223444456789999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||++|||||+.+|+||+|||||+|||+.++..++++|+++.++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 46678999999986 689
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999985
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.73 Aligned_cols=215 Identities=20% Similarity=0.259 Sum_probs=180.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 478899988874 2469999999999999999999999999999999999876 4689999999765
Q ss_pred Ch----------------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-c
Q 001108 935 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-Q 997 (1156)
Q Consensus 935 ~~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~ 997 (1156)
.. ..+++.++|++|++.+++.+||+||+.+...... .......++++.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 2345679999999999999999999987542111 123344556788999999997653 4
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 998 ~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.. +..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 3579999999999999999999999999999999999999999999999877999999999986 46778999
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 688888874
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=349.31 Aligned_cols=218 Identities=25% Similarity=0.342 Sum_probs=180.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+... .....+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 589999999885210 012359999999999999999999999999999999999876 5689999999765
Q ss_pred Ch-------------------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC
Q 001108 935 KQ-------------------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993 (1156)
Q Consensus 935 ~~-------------------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~ 993 (1156)
.. ...++.+|||+|++ .+++ .||+||+.|+.... ..+.++..+++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23456799999987 3444 59999998865322 223444556788999999996
Q ss_pred -cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 001108 994 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1072 (1156)
Q Consensus 994 -~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~ 1072 (1156)
+..+.. +..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455544 3579999999999999999999999999999999999999999999998777999999999986 477
Q ss_pred HhcCeEEEEecCcEEEEecCC
Q 001108 1073 EAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1073 ~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+.||++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999986 689999874
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=335.12 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=172.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ....+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTGG---------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCCC---------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788888774110 01369999999999999999999999999999999999865 56899999998764
Q ss_pred h------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
. ..+++.+||++|++ .+++.+||+||+.+....... ....+..+..++++++.+++. ...+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 466789999999886543321 111111122235788999985 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 69999999999999999999999999999999999999999999999765 899999999986 46678999999986 6
Q ss_pred EEEEec
Q 001108 1086 QEIYVG 1091 (1156)
Q Consensus 1086 ~~~~~g 1091 (1156)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 776543
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=333.11 Aligned_cols=208 Identities=24% Similarity=0.307 Sum_probs=174.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ +++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788888773 12368999999999999999999999999999999999875 56899999998653
Q ss_pred hh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. .+++.++|++|++.+++.+|++||+.+....+. ...++..+.++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 135679999999988888999999988754431 23334455678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.+|++++|++| ++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G-~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDG-HL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC-EE
Confidence 99999999999999999999999999999999999999999999777899999999987 477789999999874 53
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=334.78 Aligned_cols=205 Identities=30% Similarity=0.403 Sum_probs=172.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 5999999999999999999999999999999999999998 999999999876432 1457999999998899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++....+... ......++.+++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 9999999988654322100 001123567788999987766544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|+..++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999876532 4455557778888999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=337.20 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=180.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++|+++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887763 2469999999999999999999999999999999999875 56899999998754
Q ss_pred h----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
. ...++.++|++|++.+++.+||+||+.+...++. ....++.+..++++++.+++.+..+.. +..||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 1234579999999988888999999987643321 122334456788999999998766554 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.++++.++|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999986 57789999999986 6888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 74
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=343.54 Aligned_cols=224 Identities=27% Similarity=0.381 Sum_probs=179.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCC-CC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-NH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d-~~ 237 (1156)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 4999999999999999999999999999999999999998 99999999987521 1246799999985 24
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1156)
+...||.||+.|+....+... .+...++.++++.+||. ...++
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccC--
Confidence 445799999999864432110 01122456778899995 34443
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.++||+|+
T Consensus 141 ---~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 141 ---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ---CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 3457999999999999999999999999999999999999999999998754 3 4456667888899999999999
Q ss_pred EEcCCeEEEEcChhHHH---HHHHhcCCCCCCCCChHHHH
Q 001108 397 LLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADFL 433 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~ad~l 433 (1156)
+|++|+++++|+++++. +++...|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999999874 34556677776654444333
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=335.52 Aligned_cols=214 Identities=27% Similarity=0.389 Sum_probs=172.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 4999999999999999999999999999999999999988 9999999998765432 24699999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++....+... ..+. .... ...+....++++++.+||++..++.+
T Consensus 91 tv~~~l~~~~~~~~~~~-------~~~~------~~~~-----------~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 91 TVLENVMVAAQARTGSG-------LLLA------RARR-----------EEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CHHHHHHHHHhhccccc-------cccc------cccc-----------cHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 99999998754321000 0000 0000 00011234677889999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. .+ .+|+.++|+..++.++||+|++|++|
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG-ITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 46999999999999999999999999999999999999999999998764 44 45556788888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 220 ~i~~~~~~~~~~ 231 (236)
T cd03219 220 RVIAEGTPDEVR 231 (236)
T ss_pred EEEeecCHHHhc
Confidence 999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.70 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=177.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcCc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 932 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 932 (1156)
++++|+++.++ +..+|+|+||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788888774 245899999999999999999999999999999999986521 12899999998
Q ss_pred cCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC----cccccccCCC
Q 001108 933 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGLP 1003 (1156)
Q Consensus 933 ~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~~~~ 1003 (1156)
++.. ...++.++|++|++.+++ .|++||+.+....+. .....+..+.++++++.++|. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999998888 999999998754431 122344456788999999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999876 489999999986 47788999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 688888874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=329.71 Aligned_cols=199 Identities=30% Similarity=0.424 Sum_probs=167.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 4899999999999999999999999999999999999988 9999999998754332 35799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++.+..+... .+....++.+++.+||.+..+..+ +.|
T Consensus 91 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKP-----KQL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCCh-----hhC
Confidence 99988754321100 001123567788999987777655 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++...+ ++|+.++|+..++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998765334 45555778888999999999999999999
Q ss_pred EEc
Q 001108 405 YQG 407 (1156)
Q Consensus 405 ~~G 407 (1156)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=344.95 Aligned_cols=217 Identities=22% Similarity=0.326 Sum_probs=179.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+.... ..+.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGTP--------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCCc--------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 678999988852110 11359999999999999999999999999999999999876 46899999998763
Q ss_pred h-------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 936 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
. ..+++.+|||+|++ .+++ .||.||+.|..... ..+.++..+.+.++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 23456799999986 3444 59999999875432 233445566788999999996 566654 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++||+||+.+|+||+|||||+|||+.++..++++|+++.+ .|+|||++||+++ ++.+.+|++++|++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999975 4999999999986 47788999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 689999874
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=331.99 Aligned_cols=194 Identities=25% Similarity=0.384 Sum_probs=163.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 4999999999999999999999999999999999999998 999999999875432 2357999999998899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++.+..+... .+....++.+++.+||++..++.+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 136 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP--- 136 (216)
T ss_pred cccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999998754322100 001123567889999987766554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.++||+|++|+
T Consensus 137 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 137 --MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTLS 212 (216)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998754 3 4456667888889999999999999
Q ss_pred CCeE
Q 001108 400 DGQI 403 (1156)
Q Consensus 400 ~G~i 403 (1156)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9974
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=330.26 Aligned_cols=201 Identities=29% Similarity=0.397 Sum_probs=168.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 45999999999999999999999999999999999999988 9999999988753 346799999998888889999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++....+... ......++.+++.+||.+..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998754322100 001123567888999987666554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc--CCe
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~--~G~ 402 (1156)
||||||||+||+||+.+|+++||||||+|||+.++..+++.|+++....+ ++|+.++|+..++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999998754334 455557788888999999999999 799
Q ss_pred EEEEcChh
Q 001108 403 IVYQGPRE 410 (1156)
Q Consensus 403 iv~~G~~~ 410 (1156)
+++.++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99988653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=343.33 Aligned_cols=216 Identities=24% Similarity=0.304 Sum_probs=182.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++.. ..+.+|+|||++|++||++||+|+||||||||+++|+|... +..|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37889999887421 12358999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.++.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 234567999999973 567789999999875432 2344455667899999999988777663 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||+||+.+|+||+|||||+|||+.++..+++.|++++++ |+|||++||+++. + ..||++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999863 4 68999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=332.87 Aligned_cols=212 Identities=26% Similarity=0.381 Sum_probs=177.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 56788887763 2469999999999999999999999999999999999875 46899999998753
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ....+.++|++|++.+++.+|++||+.+.+..+ ....+...+.+.++++.++|.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122356999999998888999999998765443 1223334556788999999987766653 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ +|+|||+++|+++. + +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999874 58999999999863 4 45999999986 68888876
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=311.54 Aligned_cols=207 Identities=30% Similarity=0.439 Sum_probs=175.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc---ceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lT 242 (1156)
.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||.+++.+.+. +.-+..+|+..+-+..|
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 4999999999999999999999999999999999999998 99999999999888763 56789999988877889
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+|-+.+++.-.+.+... .+...+++..|...++.+.+. +..+
T Consensus 92 v~eVV~mGr~p~~~g~~~--------------------------------~e~~~i~~~ala~~d~~~la~-----R~y~ 134 (259)
T COG4559 92 VQEVVQMGRIPHRSGREP--------------------------------EEDERIAAQALAATDLSGLAG-----RDYR 134 (259)
T ss_pred HHHHHHhcccccccCCCc--------------------------------hhhHHHHHHHHHHcChhhhhc-----cchh
Confidence 999999987544222110 011234666777778877665 3445
Q ss_pred CCChhHHHHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 323 GISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.|||||||||.+||.|+. ++++||||||||+||......+++..+++++. + ..|+.+.|+..-+..+||+|+
T Consensus 135 ~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDriv 212 (259)
T COG4559 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRIV 212 (259)
T ss_pred hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhheee
Confidence 799999999999999975 45689999999999999999999999999874 3 566678899999999999999
Q ss_pred EEcCCeEEEEcChhHHHH
Q 001108 397 LLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1156)
+|.+||++..|++++++.
T Consensus 213 ll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 213 LLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeCCeEeecCCHHHhcC
Confidence 999999999999998763
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=337.51 Aligned_cols=206 Identities=21% Similarity=0.278 Sum_probs=176.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999998874 2458999999999999999999999999999999999876 4689999998765
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ..++.++|++|++.+++.+||+||+.+... . ..++.+.++++.++|.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 235679999999998888999999987521 0 1234578899999998776665 3579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++||++|+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 4899999999986 46788999999986 688888764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=330.73 Aligned_cols=210 Identities=25% Similarity=0.332 Sum_probs=172.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++.. .+.+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5678888877421 012469999999999999999999999999999999999876 46899999998753
Q ss_pred hh---c---cc-ceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 936 QE---T---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 936 ~~---~---~~-~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+++.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 569999999988889999999988654331 122333456788999999987766653 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||++|||+|+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++||+++. + +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEEEeC-CEe
Confidence 99999999999999999999999999999999999999999999875 48999999999863 4 56899999986 454
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=333.68 Aligned_cols=203 Identities=25% Similarity=0.367 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL-----DPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d 235 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|.++.... .++.++|++|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 4999999999999999999999999999999999999 777 999999999875432 245799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.++ .+||+||+.++....+.... .+....++.+++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhcc
Confidence 777 89999999987543221000 00112356678899998765554
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+. +..|||||||||+||++|+.+|+++||||||+|||+.++..+++.|+++++ . ++||.++|+..++.++||+|
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEE
Confidence 31 357999999999999999999999999999999999999999999998754 3 55666788888999999999
Q ss_pred EEEcCCeEEEEcChhH
Q 001108 396 ILLSDGQIVYQGPREL 411 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (1156)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=332.58 Aligned_cols=204 Identities=22% Similarity=0.383 Sum_probs=171.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 4999999999999999999999999999999999999998 9999999988754332 24699999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.+.....+.. . .+....++.+++.+||++..++.+
T Consensus 91 tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 131 (232)
T cd03218 91 TVEENILAVLEIRGLS-K---------------------------------KEREEKLEELLEEFHITHLRKSKA----- 131 (232)
T ss_pred cHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 9999998864322110 0 001124567888999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+|++|++|
T Consensus 132 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 132 SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 3 445566778888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+.+++.
T Consensus 210 ~i~~~~~~~~~~ 221 (232)
T cd03218 210 KVLAEGTPEEIA 221 (232)
T ss_pred eEEEEeCHHHhh
Confidence 999999987653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=343.64 Aligned_cols=204 Identities=27% Similarity=0.396 Sum_probs=175.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|+||++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.+||++|++.+++.+||
T Consensus 16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999998875422 24679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|.+++.+... .+....++.+++.+||++..++.++ .
T Consensus 93 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 133 (301)
T TIGR03522 93 REYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG-----Q 133 (301)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----h
Confidence 999998765543110 0011235678999999988876654 6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+++|++|||||||+|||+.++..+++.|+++. .+ ++|+.++|...++.++||+|++|++|++
T Consensus 134 LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiii~sH~l~~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KD-KTIILSTHIMQEVEAICDRVIIINKGKI 210 (301)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999874 34 5566678889999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+.+++..
T Consensus 211 ~~~g~~~~~~~ 221 (301)
T TIGR03522 211 VADKKLDELSA 221 (301)
T ss_pred EEeCCHHHHHH
Confidence 99999998755
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=335.37 Aligned_cols=212 Identities=22% Similarity=0.335 Sum_probs=177.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478899988774 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCC
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~~~~~~~~LS 1009 (1156)
... ..++.++|++|++.+++.+||.||+.+..... ..+...+.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 23457999999999888899999998764221 1122334567777877 466555543 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 57889999999986 68999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9875
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=329.65 Aligned_cols=208 Identities=25% Similarity=0.340 Sum_probs=177.4
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 5677777663 2469999999999999999999999999999999999865 568999999987643
Q ss_pred hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 001108 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 1016 (1156)
Q Consensus 937 ~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl 1016 (1156)
.. .+.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2569999999988888999999987654432 11 235778999999988777653 46999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1017 ~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
+||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999877999999999987 47788999999986 6899988763
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.51 Aligned_cols=213 Identities=23% Similarity=0.320 Sum_probs=179.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ +++.+|+||||+|++||++||+|||||||||||++|+|... +..|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788887763 12358999999999999999999999999999999999876 56899999998764
Q ss_pred h----hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 936 Q----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~----~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
. ...++.+||++|++. .+...|+.||+.|..... ..+..+.++.++++++.++|.+..+..+ ..||+
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998865432 2234445567889999999988777653 57999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||+||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++ +.||++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 35 67999999986 688999
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=387.30 Aligned_cols=253 Identities=24% Similarity=0.328 Sum_probs=195.1
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.++|. .. +....+.....|+|+||++.+..
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~-----~~--~~~~~~~~~~~I~~~nvsf~Y~~--------------------------- 463 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEV-----DE--AKTDPGKLSGAIEVDRVTFRYRP--------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHHhcCCccc-----cc--CcCCCCCCCceEEEEEEEEEcCC---------------------------
Confidence 567778888888887765541 00 00001112347999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|+
T Consensus 464 -----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 464 -----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred -----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 1134899999999999999999999999999999999999998 9999999999887654 5789999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++.. ...+.+.++++. .++ +.. ...|+++.||
T Consensus 536 ~~lf-~gTI~eNi~~~~~-----~~~e~i~~al~~---a~l------------------------~~~--i~~lp~G~dt 580 (686)
T TIGR03797 536 GRLM-SGSIFENIAGGAP-----LTLDEAWEAARM---AGL------------------------AED--IRAMPMGMHT 580 (686)
T ss_pred CccC-cccHHHHHhcCCC-----CCHHHHHHHHHH---cCc------------------------HHH--HHhccccccc
Confidence 7655 5799999998632 111222222221 111 111 2246788999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ .+||||||||++|||||+++|++|+||||||+||+.++.+|.+.|+++ ++|+|+ ++|. .++.+.+|+
T Consensus 581 ~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr-~~~i~~~D~ 653 (686)
T TIGR03797 581 VISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHR-LSTIRNADR 653 (686)
T ss_pred cccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecC-hHHHHcCCE
Confidence 999875 479999999999999999999999999999999999999999999863 355555 4554 366788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++++
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=342.93 Aligned_cols=218 Identities=24% Similarity=0.295 Sum_probs=179.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13641 3 IKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67889988874210 001358999999999999999999999999999999999876 56899999998753
Q ss_pred h-------hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 Q-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
. ...++.+||++|++. .+..+||.||+.|..... ....++..+.++++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PF 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cc
Confidence 2 223457999999973 233589999998865432 123445556788999999997 566665 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.||++++|++ |+
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~ 222 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GK 222 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999777999999999987 47789999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13641 223 LIKHASP 229 (287)
T ss_pred EEEeCCH
Confidence 8888874
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=314.33 Aligned_cols=210 Identities=22% Similarity=0.377 Sum_probs=181.3
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1156)
+++.+++|||+.+++||+++|+|||||||||.+.++.|+..|+ +|+|.+||.+++.+... .-+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567999999999999999999999999999999999999999 99999999999887653 3589999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
-.+||+|||.-....+....+ ..+.+...+.+|+.|.+.++++..-.
T Consensus 92 r~LtV~dNi~~vlE~~~~d~~--------------------------------~~~~~~~l~~LL~ef~i~hlr~~~a~- 138 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDLK--------------------------------KAERKEELDALLEEFHITHLRDSKAY- 138 (243)
T ss_pred hcCcHHHHHHHHHhhhhcchh--------------------------------HHHHHHHHHHHHHHhchHHHhcCccc-
Confidence 999999999876644321100 01123457889999999999986543
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.||||||+|+-|||||+.+|+.++||||++|+||-+..+|.+.++.+.. .+.-|+..-|+..|+...|||.+++
T Consensus 139 ----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 139 ----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred ----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEE
Confidence 6999999999999999999999999999999999999999999998864 3444555788999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999998864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=336.21 Aligned_cols=214 Identities=23% Similarity=0.313 Sum_probs=180.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35788888774 2469999999999999999999999999999999999876 46899999997653
Q ss_pred h----------------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccc
Q 001108 936 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999 (1156)
Q Consensus 936 ~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ 999 (1156)
. ...++.++|++|++.+++..|+.||+.+...... ........+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 1235679999999999999999999987543211 123344456788999999998776665
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeE
Q 001108 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1000 ~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++...+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 477889999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 688888874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=346.24 Aligned_cols=229 Identities=21% Similarity=0.233 Sum_probs=184.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++.+++............+...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 47899998887532110000000123579999999999999999999999999999999999876 4589999999876
Q ss_pred Chh------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 935 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~~------~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
... .+++.++||+|++ .++|.+||.||+.+...... ...+.++.++.+.++++.++|. ...++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2356799999997 57889999999988654331 1234455667788999999995 345554 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++|||||+.+|++|||||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999986 46778999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 699999874
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=333.84 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=179.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67888888774 2469999999999999999999999999999999999876 56899999998642
Q ss_pred ---------hhcccceEEEeccCCCCCCCCCHHHHHHHH-HHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 936 ---------QETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ---------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~-~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
....++.++|++|++.+++.+|+.||+.+. .... .....+..+.+.++++.+++.+..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 112345799999999999999999999753 2221 1223334566888999999987777653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999986 46778999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 88888874
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=330.32 Aligned_cols=203 Identities=31% Similarity=0.437 Sum_probs=170.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc--CccceEEEEcCCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (1156)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 35999999999999999999999999999999999999998 99999999987532 12456999999988888999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.+..+..+.... +....++++++.+||++..++.++
T Consensus 92 v~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPKS----------------------------------EIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 99999886543321100 011235667889999877776554
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|+..++.+.+|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998753 3 556667788888889999999999999
Q ss_pred EEEEcChhHH
Q 001108 403 IVYQGPRELV 412 (1156)
Q Consensus 403 iv~~G~~~~~ 412 (1156)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=330.06 Aligned_cols=202 Identities=25% Similarity=0.416 Sum_probs=167.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988755432 35699999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-CCcccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (1156)
||+||+.++....+ .. + ....++.+++.+ ++++..++.+
T Consensus 91 t~~~~l~~~~~~~~--~~-----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~---- 130 (222)
T cd03224 91 TVEENLLLGAYARR--RA-----K-----------------------------RKARLERVYELFPRLKERRKQLA---- 130 (222)
T ss_pred cHHHHHHHHhhhcC--ch-----h-----------------------------HHHHHHHHHHHHHhhhhhhhCch----
Confidence 99999988753321 00 0 011233455666 4665555444
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+|++|++
T Consensus 131 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 131 -GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLER 207 (222)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEeeC
Confidence 46999999999999999999999999999999999999999999998754 3 44555677888899999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+.+++.
T Consensus 208 G~i~~~~~~~~~~ 220 (222)
T cd03224 208 GRVVLEGTAAELL 220 (222)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=339.94 Aligned_cols=214 Identities=25% Similarity=0.366 Sum_probs=180.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++. +..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678899888741 2358999999999999999999999999999999999876 56899999998754
Q ss_pred h---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
. ...++.+||++|++. .+...||.||+.+..... ..+.+...+.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 334579999998765432 2334445567889999999988777663 579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999987 57789999999986 688999
Q ss_pred cCC
Q 001108 1091 GPL 1093 (1156)
Q Consensus 1091 g~~ 1093 (1156)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=339.08 Aligned_cols=215 Identities=22% Similarity=0.342 Sum_probs=174.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1156)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 4999999999999999999999999999999999999998 9999999998764322 35799999986 367789
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+|||.|+....+... .+....++++++.+||++..+..+
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~----- 138 (279)
T PRK13650 98 TVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP----- 138 (279)
T ss_pred cHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 99999998754322110 011224567899999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++...+ ++|+.++|+..++ ..||+|++|++|
T Consensus 139 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tilivtH~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ-MTVISITHDLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH-HhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998865334 4455566777777 589999999999
Q ss_pred eEEEEcChhHHHH---HHHhcCCCCC
Q 001108 402 QIVYQGPRELVLE---FFASMGFRCP 424 (1156)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p 424 (1156)
+++..|+++++.. .++..|+.+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 217 QVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred EEEEECCHHHHHcChHHHHHcCCCCc
Confidence 9999999987653 2334454433
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=354.09 Aligned_cols=255 Identities=26% Similarity=0.369 Sum_probs=195.1
Q ss_pred HhhHHHHHHhhhccccchHHHHHHHHHHHhh-cCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDR-VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
+...+..|+++...+.+++. ...-.. .-...|.++++.+||+|.++.
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~-----~~~~~~~~~~~~~~~ei~~~~l~~~y~~--------------------------- 332 (559)
T COG4988 285 AAGEAAADKLFTLLESPVAT-----PGSGEKAEVANEPPIEISLENLSFRYPD--------------------------- 332 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCC-----CCCccccccccCCCceeeecceEEecCC---------------------------
Confidence 34456666666666665541 111101 112336889999999999753
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~ 234 (1156)
. +++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||++.++.. .+++++||+|+
T Consensus 333 -----g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 333 -----G-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred -----C-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCC
Confidence 1 14899999999999999999999999999999999999998 999999999987765 36899999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+ +..|+||||.++..- ...+.+.++.++. .+.+.+.-+.+.||
T Consensus 404 p~l-f~gTireNi~l~~~~----~s~e~i~~al~~a------------------------------~l~~~v~~p~GLdt 448 (559)
T COG4988 404 PYL-FAGTIRENILLARPD----ASDEEIIAALDQA------------------------------GLLEFVPKPDGLDT 448 (559)
T ss_pred Ccc-ccccHHHHhhccCCc----CCHHHHHHHHHHh------------------------------cHHHhhcCCCcccc
Confidence 755 457999999987521 1112222221111 11222333668899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ++|||||+|||++||||+.+++++++||||++||..++..|.+.|.++++ ++|+++ ++| +.+...-+|+
T Consensus 449 ~ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itH-rl~~~~~~D~ 523 (559)
T COG4988 449 VIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITH-RLEDAADADR 523 (559)
T ss_pred hhccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEc-ChHHHhcCCE
Confidence 999865 57999999999999999999999999999999999999999999998764 355555 444 4567788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|.++++.+
T Consensus 524 I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 524 IVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEEecCCceeccCCHHHHhh
Confidence 99999999999999999854
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=336.26 Aligned_cols=213 Identities=25% Similarity=0.353 Sum_probs=178.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67888888774 2469999999999999999999999999999999999865 56899999998653
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
. ..+++.++|++|++.+++.+||+||+.+...... ...+..++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 2234579999999988888999999988643211 122333456788999999987777653 5799999
Q ss_pred HHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1013 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1013 rqrl~iA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
|||++||+||+ .+|++|+|||||+|||+.++..+++.|+++. ++|+|||++||++. ++.+.||++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 67999999999986 47779999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 88888874
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=333.69 Aligned_cols=213 Identities=30% Similarity=0.409 Sum_probs=171.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 5999999999999999999999999999999999999988 999999999876543 2357999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++..... .. .... .+.. .......++.+++.+||.+..++.+
T Consensus 92 ~~tv~~~l~~~~~~~~--~~---~~~~------~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 142 (241)
T cd03256 92 RLSVLENVLSGRLGRR--ST---WRSL------FGLF---------------PKEEKQRALAALERVGLLDKAYQRA--- 142 (241)
T ss_pred cCcHHHHHHhhhcccc--hh---hhhh------cccC---------------cHHHHHHHHHHHHHcCChhhhCCCc---
Confidence 9999999987642110 00 0000 0000 0001224567788999987666544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+ ++||.++|+..++.+++|++++|+
T Consensus 143 --~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l~ 219 (241)
T cd03256 143 --DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGLK 219 (241)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998765334 455667888889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 220 ~G~i~~~~~~~~~~ 233 (241)
T cd03256 220 DGRIVFDGPPAELT 233 (241)
T ss_pred CCEEEeecCHHHhh
Confidence 99999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=336.58 Aligned_cols=206 Identities=21% Similarity=0.356 Sum_probs=171.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 4899999999999999999999999999999999999998 999999998875432 1356999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++..... ... + .+....+..+++.+||.+..++.+
T Consensus 98 ~~tv~enl~~~~~~~~-~~~-----~---------------------------~~~~~~~~~~l~~~gl~~~~~~~~--- 141 (269)
T PRK11831 98 DMNVFDNVAYPLREHT-QLP-----A---------------------------PLLHSTVMMKLEAVGLRGAAKLMP--- 141 (269)
T ss_pred CCCHHHHHHHHHHHcc-CCC-----H---------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999988643210 000 0 001123466788999988777655
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++... .+++||.++|+..++.++||+|++|+
T Consensus 142 --~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l~ 218 (269)
T PRK11831 142 --SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIVA 218 (269)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEEE
Confidence 469999999999999999999999999999999999999999999987653 24455567888899999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (269)
T PRK11831 219 DKKIVAHGSAQALQ 232 (269)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=333.45 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=178.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 367888888763 246899999999999999999999999999999999986421 3689999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc----cccccCCCC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVGLPG 1004 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~~~~~~ 1004 (1156)
.++.. ..+++.+||++|++.+++.+||.||+.+....+.. ....++..+.++++++.++|.+. .+..
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87542 23456799999999888899999999986543211 11223445668899999998642 3333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
+.+||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.||++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 899999999987 47788999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 688888874
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=336.10 Aligned_cols=217 Identities=22% Similarity=0.269 Sum_probs=179.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478899988773 2469999999999999999999999999999999999866 5689999999876
Q ss_pred Chh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC----------CCC--ChHHHHHHHHHHHHHcCCCccccc
Q 001108 935 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS----------PEV--DSETRKMFIDEVMELVELNPLRQS 998 (1156)
Q Consensus 935 ~~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~----------~~~--~~~~~~~~v~~~l~~l~l~~~~~~ 998 (1156)
... . .+..++|++|++.+++.+||+||+.+....... ... ...+..+.+.++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233589999999999999999999986431100 000 111233567888999999877666
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCe
Q 001108 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 999 ~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.+ ..||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 53 569999999999999999999999999999999999999999999998765 899999999987 57788999
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999986 688888875
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=332.43 Aligned_cols=205 Identities=28% Similarity=0.421 Sum_probs=170.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.+||.++..... ++.++|++|++.+++.+|
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 4999999999999999999999999999999999999998 9999999988754322 357999999998999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc--cccccccccc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV--CADTMVGDEM 320 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~~ 320 (1156)
|+||+.++.+..+... .+....+.++++.+||+. ..++ .
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~-----~ 132 (242)
T cd03295 92 VEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADR-----Y 132 (242)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhc-----C
Confidence 9999988654322100 001123567788999975 4444 3
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++... +++||.++|+..++.+++|+|++|++
T Consensus 133 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tvii~sH~~~~~~~~~d~i~~l~~ 211 (242)
T cd03295 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAIMKN 211 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999876532 44555677788889999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+++++.
T Consensus 212 G~i~~~~~~~~~~ 224 (242)
T cd03295 212 GEIVQVGTPDEIL 224 (242)
T ss_pred CEEEEecCHHHHH
Confidence 9999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=337.02 Aligned_cols=203 Identities=26% Similarity=0.337 Sum_probs=169.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4999999999999999999999999999999999999998 9999999998764332 357999999853 45678
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+....+... .+....++.+++.+||.+..++.+
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPP----- 136 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCh-----
Confidence 99999998753221100 001124567889999987776655
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++. . +.+|+.++|+..++.++||+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 3 445566788888999999999999999
Q ss_pred eEEEEcChhHH
Q 001108 402 QIVYQGPRELV 412 (1156)
Q Consensus 402 ~iv~~G~~~~~ 412 (1156)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=343.98 Aligned_cols=217 Identities=22% Similarity=0.414 Sum_probs=173.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------------------Ccc
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------------------VPQ 225 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------------------~~~ 225 (1156)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 34999999999999999999999999999999999999998 99999999886432 124
Q ss_pred ceEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHH
Q 001108 226 RTAAYISQHDN-HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1156)
Q Consensus 226 ~~~~yv~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1156)
+.++||+|++. .+...||+||+.|+....+.. . .+....++.+++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 67999999862 344569999999875322110 0 001124567788
Q ss_pred HcCCc-ccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001108 305 VLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1156)
Q Consensus 305 ~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q 383 (1156)
.+||+ ...+. .+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|
T Consensus 162 ~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITH 234 (320)
T ss_pred HcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEec
Confidence 99996 34443 3457999999999999999999999999999999999999999999998754 3 445666788
Q ss_pred ChhhHHhhcCeEEEEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001108 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1156)
Q Consensus 384 ~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1156)
+..++.++||+|++|++|++++.|+++++.. .++..|+.+|.
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 8888999999999999999999999988742 34455555544
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=326.48 Aligned_cols=197 Identities=27% Similarity=0.415 Sum_probs=166.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 4999999999999999999999999999999999999988 9999999987754 23567999999988889999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.+.....+... .+....++++++.+||++..++.+ +.||
T Consensus 90 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (210)
T cd03269 90 QLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EELS 130 (210)
T ss_pred HHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhCC
Confidence 9988654322100 001123567888999987776554 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999998754 3 3456667888889999999999999999987
Q ss_pred Ec
Q 001108 406 QG 407 (1156)
Q Consensus 406 ~G 407 (1156)
.|
T Consensus 209 ~~ 210 (210)
T cd03269 209 YG 210 (210)
T ss_pred cC
Confidence 65
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=342.72 Aligned_cols=205 Identities=26% Similarity=0.374 Sum_probs=169.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC-----------------------
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------------------- 221 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~----------------------- 221 (1156)
..+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999998 8999999876421
Q ss_pred ----cCccceEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhH
Q 001108 222 ----FVPQRTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296 (1156)
Q Consensus 222 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 296 (1156)
...++.+|||+|++ ..++..||+|||.|+....+... ++..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 01245799999985 35566899999998764332110 0112
Q ss_pred HHHHHHHHHcCCc-ccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 001108 297 VITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (1156)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~ 375 (1156)
.+++.+++.+||+ +..+.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.. . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 2467788999996 455544 457999999999999999999999999999999999999999999998763 3 4
Q ss_pred eEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 376 t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+|+.++|+..++.++||+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 55666888999999999999999999999999998874
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=333.98 Aligned_cols=217 Identities=24% Similarity=0.265 Sum_probs=178.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899998874 246999999999999999999999999999999999986532 3589999999
Q ss_pred ccCC-----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 123456799999999999999999999886543311 1122334456788999998853 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=332.26 Aligned_cols=219 Identities=23% Similarity=0.254 Sum_probs=176.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35788887773 24699999999999999999999999999999999997411256899999998754
Q ss_pred hh---cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhhCC--C--CCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 QE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~~---~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~--~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
.. .. +..++|++|++.+++.+|++|++.+....... . ..+.++..+.+.++++.++|. ...+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 22 23489999999999999999999876432211 0 112233345688999999997 35554421 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~Gg 1085 (1156)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+... ||++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877999999999986 36666 799999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 88888874
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=334.35 Aligned_cols=214 Identities=24% Similarity=0.287 Sum_probs=176.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588999988763 24689999999999999999999999999999999997652 13589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ..+++.+||++|++.+++ +|++||+.|....+. .+.+..++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 234567999999988887 899999998754321 233344456788999998843 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++ ++.+.||++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999986 4678899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 6 689998874
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=329.21 Aligned_cols=195 Identities=29% Similarity=0.404 Sum_probs=161.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (1156)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 45999999999999999999999999999999999999998 999999999876533 13579999999889
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 999999999998764332100 001123567888999987666554
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++. .||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG-TTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHh-hhcEEEE
Confidence 46999999999999999999999999999999999999999999998765234 44555677777775 9999999
Q ss_pred EcCCeE
Q 001108 398 LSDGQI 403 (1156)
Q Consensus 398 L~~G~i 403 (1156)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=333.81 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=176.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+||||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999998874 235899999999999999999999999999999999976531 2479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC----cccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~~~ 1002 (1156)
.++.. ..+++.+||++|++.+++ +||+||+.|...... .......++.+.++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234567999999988774 899999998754321 112233456678889998874 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..++++|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999996 4799999999987 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=331.95 Aligned_cols=215 Identities=25% Similarity=0.315 Sum_probs=178.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++||+++|+|+|||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 57788887763 2469999999999999999999999999999999999865 46899999998754
Q ss_pred hh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC--C---CCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P---EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~--~---~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..++.++++++.+++.+..+.. +.
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 21 1234699999999999999999999886432100 0 011233456688999999998776665 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 6999999999999999999999999999999999999999999999865 799999999986 47788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=336.95 Aligned_cols=208 Identities=25% Similarity=0.345 Sum_probs=174.4
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (1156)
....+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3456999999999999999999999999999999999999998 9999999988754321 24799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++.+||+||+.++....+... . .....++++++.+||.+..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~------~----------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR------A----------------------------EREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH------H----------------------------HHHHHHHHHHHHcCCHhHhhCC
Confidence 88989999999998754322100 0 0112356788999998777766
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
++ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++...+ .+|+.++|+..++.+++|++
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ-KTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEE
Confidence 54 6999999999999999999999999999999999999999999998765334 45556778888999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=326.64 Aligned_cols=207 Identities=24% Similarity=0.330 Sum_probs=171.2
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
.++|+++.++ ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCc
Confidence 5678877763 122 39999999999999999999999999999999876 568999999987643
Q ss_pred h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..++.+||++|++.+++.+|++||+.+....+. .. .+..++.++++++.+++.+..+..+ ..||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1 234679999999999989999999987543211 11 1233456889999999987777653 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
++||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.||++++|++ |+++..
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 210 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQ 210 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeec
Confidence 9999999999999999999999999999999999999875 4899999999986 47788999999986 576654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=328.42 Aligned_cols=201 Identities=25% Similarity=0.346 Sum_probs=165.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|+++|.++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 45999999999999999999999999999999999999988 9999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999998654321100 001124567889999987666544
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..|||||||||+||++++.+|++|||||||+|||+.++..+.+.|+++.... +++||.++|+..++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQ-GTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHh-hCEEEE
Confidence 4699999999999999999999999999999999999999999999876433 4455557777777665 589999
Q ss_pred EcCCeEEEEcCh
Q 001108 398 LSDGQIVYQGPR 409 (1156)
Q Consensus 398 L~~G~iv~~G~~ 409 (1156)
|.+|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=350.55 Aligned_cols=208 Identities=26% Similarity=0.441 Sum_probs=175.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+||.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|+..+++.+|
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 467999999988889999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.++..... + ... . ...+....++++++.+||.+..++.+ +
T Consensus 94 v~e~v~~~~~~~~-~-~~~---------------~-------------~~~~~~~~v~~~le~vgl~~~~~~~~-----~ 138 (402)
T PRK09536 94 VRQVVEMGRTPHR-S-RFD---------------T-------------WTETDRAAVERAMERTGVAQFADRPV-----T 138 (402)
T ss_pred HHHHHHhccchhc-c-ccc---------------C-------------CCHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 9999998642110 0 000 0 00011235678899999988777654 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||.|||||+.+|++|||||||+|||+.++.++++.|+++++ .+ ++|+.++|+..++.++||++++|++|+
T Consensus 139 ~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~G~ 216 (402)
T PRK09536 139 SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLADGR 216 (402)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999874 34 456667889999999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
+++.|++++++
T Consensus 217 iv~~G~~~ev~ 227 (402)
T PRK09536 217 VRAAGPPADVL 227 (402)
T ss_pred EEEecCHHHHh
Confidence 99999998864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=335.09 Aligned_cols=217 Identities=25% Similarity=0.342 Sum_probs=179.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++++ ++.+|+||||++++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67888888763 3469999999999999999999999999999999999865 46899999998653
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
. ..+++.++|++|+..+++.+|+.||+.++...... .....+...+.++++++.+++.+..++. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23345699999999888889999999875311000 0111123345678899999998777765 3569999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777999999999987 57889999999986 6888888
Q ss_pred CCC
Q 001108 1092 PLG 1094 (1156)
Q Consensus 1092 ~~~ 1094 (1156)
+..
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 753
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=351.36 Aligned_cols=257 Identities=22% Similarity=0.316 Sum_probs=197.7
Q ss_pred chHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 77 GLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
..++...+..|+-++.+++++. .. +.-..+.+...++++||+|+++.
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~-----~~--~~~~~~~~~~~l~~~~vsF~y~~-------------------------- 348 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEV-----TF--PDEQTATTGQALELRNVSFTYPG-------------------------- 348 (573)
T ss_pred HhhHHHHHHHHHhhhccCCccc-----CC--CccccCCccceeeeccceeecCC--------------------------
Confidence 3556777888888888887772 11 11112222226999999999864
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
++.++|+|+|+++++||.+||+|+||||||||++.|+|-++|+ +|+|++||.++..... ++.+++++|
T Consensus 349 ------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Q 419 (573)
T COG4987 349 ------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ 419 (573)
T ss_pred ------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhcc
Confidence 1234999999999999999999999999999999999999999 9999999999876655 468999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
..|++..|+|+||.++.. ....+.+.++.++. + .++. ....++..|
T Consensus 420 -r~hlF~~Tlr~NL~lA~~----~AsDEel~~aL~qv---g------------------------L~~l--~~~~p~gl~ 465 (573)
T COG4987 420 -RVHLFSGTLRDNLRLANP----DASDEELWAALQQV---G------------------------LEKL--LESAPDGLN 465 (573)
T ss_pred -chHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHc---C------------------------HHHH--HHhChhhhh
Confidence 567888999999988642 22222222221111 0 0111 123556789
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.+|+.+. .||||||||++|||+|+++.++++|||||.|||+.|+.++++.|.+-+ .++|+++ ++|+... .+.||
T Consensus 466 t~lge~G~-~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~-vTHrL~~-le~~d 540 (573)
T COG4987 466 TWLGEGGR-RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLM-VTHRLRG-LERMD 540 (573)
T ss_pred chhccCCC-cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEE-Eeccccc-HhhcC
Confidence 99998654 699999999999999999999999999999999999999999997643 4566655 5555544 57899
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001108 394 DIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|++|++|+++++|.+.+++.
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=339.17 Aligned_cols=215 Identities=26% Similarity=0.299 Sum_probs=181.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. ..+.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3788999888741 12358999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++.++.+.++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 566789999998875433 1233445567899999999988777664 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|+||||||||+|||+.++..++++|+++.++ |+|||++||+++. + +.||++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 8999999999863 4 46999999986 68899
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=343.14 Aligned_cols=208 Identities=23% Similarity=0.244 Sum_probs=173.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCC--C
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (1156)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999987 999999999886543 235799999986 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
+++.+||.||+.+..+....+.. ..+....++.+++.+||. ...+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~--------------------------------~~~~~~~~~~~l~~vgl~~~~~~-- 156 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLS--------------------------------RQEVKDRVKAMMLKVGLLPNLIN-- 156 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC--------------------------------HHHHHHHHHHHHHHcCCChHHhc--
Confidence 78899999999987543210000 001123456788999994 3344
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+.+..|||||||||+||+||+.+|++||+||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 157 ---~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 ---RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 445679999999999999999999999999999999999999999999987653 3456667899999999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=303.69 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=177.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
..+|+|||++|.+||.++++||||||||||||+++|..+ +..|.|.+||.++...... -|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAE--RGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCcc--ceeEeccCccchhhHHHH
Confidence 358999999999999999999999999999999999887 6789999999987654333 389999999999999999
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1040 (1156)
|+.|+..++. +++.++.+.+.+.+..++|.+..++. +-+||||||||+.|||||+.+|+.|+||||.+.||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999998874 56788899999999999999988776 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEecCC
Q 001108 1041 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPL 1093 (1156)
Q Consensus 1041 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G-g~~~~~g~~ 1093 (1156)
-+++.++++|-++.+ +|+.++++||+.+ +..-.++++++|..| |+++..=++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999864 5999999999976 445567999999865 677777665
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=340.04 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=169.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCC-C
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-N 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d-~ 236 (1156)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 34999999999999999999999999999999999999998 99999999987542 1246799999985 2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
.+...||+||+.|+....+... .+....++++++.+||. ...++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3334699999998753321100 01112456788899996 455544
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
++.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++... .+++|+.++|+..++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 -----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred -----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 4569999999999999999999999999999999999999999999987643 3456666888889999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998764
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=333.56 Aligned_cols=212 Identities=27% Similarity=0.373 Sum_probs=170.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 4999999999999999999999999999999999999988 999999998875432 2457999999988899
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++..... .. ..... +. ...+....++.+++.+||.+..+..+
T Consensus 93 ~~tv~~~l~~~~~~~~--~~---~~~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~--- 143 (243)
T TIGR02315 93 RLTVLENVLHGRLGYK--PT---WRSLL------GR---------------FSEEDKERALSALERVGLADKAYQRA--- 143 (243)
T ss_pred cccHHHHHhhcccccc--cc---hhhhh------cc---------------ccHHHHHHHHHHHHHcCcHhhhcCCc---
Confidence 9999999987532110 00 00000 00 00011234567888999987666544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.+.. +++|+.++|+..++.++||++++|+
T Consensus 144 --~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~ 220 (243)
T TIGR02315 144 --DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVGLK 220 (243)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 4699999999999999999999999999999999999999999999876533 4455567888888999999999999
Q ss_pred CCeEEEEcChhHH
Q 001108 400 DGQIVYQGPRELV 412 (1156)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1156)
+|++++.|+++++
T Consensus 221 ~G~i~~~~~~~~~ 233 (243)
T TIGR02315 221 AGEIVFDGAPSEL 233 (243)
T ss_pred CCEEEecCCHHHh
Confidence 9999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=328.13 Aligned_cols=205 Identities=26% Similarity=0.367 Sum_probs=169.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc--cceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+||
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 4999999999999999999999999999999999999998 9999999988754322 2579999999888889999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+... .+....++.+++.+||+...++.++ .
T Consensus 92 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 132 (236)
T TIGR03864 92 RQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR-----E 132 (236)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----h
Confidence 999987653321100 0011235667889999877766554 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
||||||||++||++|+.+|+++||||||+|||+.+...+.+.|+++++..+.| |+.++|+..++. .+|+|++|++|++
T Consensus 133 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH~~~~~~-~~d~i~~l~~G~i 210 (236)
T TIGR03864 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS-VLWATHLVDEIE-ADDRLVVLHRGRV 210 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEecChhhHh-hCCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999876433444 555677777775 5999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++..
T Consensus 211 ~~~~~~~~~~~ 221 (236)
T TIGR03864 211 LADGAAAELRG 221 (236)
T ss_pred EEeCCHHHHHH
Confidence 99999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=333.09 Aligned_cols=217 Identities=19% Similarity=0.247 Sum_probs=179.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377899988874 246999999999999999999999999999999999986532 2589999999
Q ss_pred ccCC-----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++. ....++.+||++|++.+++.+||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 8753 12345679999999999999999999988754332 1123344567888999998842 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999864 699999999986 4778999999997
Q ss_pred c-----CcEEEEecCC
Q 001108 1083 R-----GGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~-----Gg~~~~~g~~ 1093 (1156)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 3 5799999874
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=337.79 Aligned_cols=213 Identities=25% Similarity=0.372 Sum_probs=177.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788888773 2358999999999999999999999999999999999876 56899999998753
Q ss_pred h-----hcccceEEEeccCCCC-CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q-----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ...++.+||++|++.. ....|+.||+.+....+ ....++..+.++++++.+++.+..+.. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1234679999999753 34568999998864432 123334455678899999998777665 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++||++|+.+|+||||||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 47788999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=350.91 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=174.5
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---c----ccceEEEeccCCCC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDIH 952 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~~ 952 (1156)
...+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... . .++.+||++|++.+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3468999999999999999999999999999999999876 5689999999876421 1 23579999999999
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001108 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLD 1032 (1156)
++.+||+||+.|....+. ...++.++.+.++++.++|.+..++.+ ..||||||||++|||||+.+|+|||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765432 233445567889999999988777763 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 5899999999987 57788999999986 688888864
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=336.24 Aligned_cols=217 Identities=21% Similarity=0.277 Sum_probs=181.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++|++++++ ++.+|+||||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 578899998874 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.++|++|++.+++.+|++||+.+....... .....+..++.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 23345799999999988889999999875311100 0001123345678999999998776665 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||+++|++. ++.+.||++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999987 48889999999986 68889
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 225 ~g~~ 228 (265)
T PRK10253 225 QGAP 228 (265)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=327.20 Aligned_cols=213 Identities=25% Similarity=0.350 Sum_probs=175.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++... ....+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 478999988874210 01358999999999999999999999999999999999876 4689999999875
Q ss_pred Chh-------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 935 KQE-------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~-------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
... ..++.++|++|++.+++.+|+.||+.+....+. ....+.++.+.++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 421 112469999999988899999999988654331 223344567889999999987766653 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |.|||+++|+++. + +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 8999999999863 4 56999999986 56
Q ss_pred EEE
Q 001108 1087 EIY 1089 (1156)
Q Consensus 1087 ~~~ 1089 (1156)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=335.36 Aligned_cols=217 Identities=27% Similarity=0.373 Sum_probs=179.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|... +..|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 588999988773 2469999999999999999999999999999999999865 4689999999765
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.++|++|++.+++.+|+.||+.+....... ........++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23455799999998888889999999875321100 00111233456789999999987666653 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||+||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999987 47789999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 8874
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=324.31 Aligned_cols=194 Identities=26% Similarity=0.397 Sum_probs=164.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-CccceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-VPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.+||+
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 4999999999999999999999999999999999999988 99999999876532 1245799999998889999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.+.....+. ....++.+++.+||++..++.+ ..|
T Consensus 91 e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 127 (208)
T cd03268 91 ENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV-----KGF 127 (208)
T ss_pred HHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH-----hhC
Confidence 999886532210 0113456788899987766554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. .+ .+|+.++|+..++.+++|++++|++|+++
T Consensus 128 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QG-ITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998764 34 44555778888999999999999999998
Q ss_pred EEc
Q 001108 405 YQG 407 (1156)
Q Consensus 405 ~~G 407 (1156)
+.|
T Consensus 206 ~~g 208 (208)
T cd03268 206 EEG 208 (208)
T ss_pred ecC
Confidence 765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=306.84 Aligned_cols=216 Identities=27% Similarity=0.393 Sum_probs=183.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
|+.+|++|++. .+.+|++||++++|||++||+|||||||||||++|+|... +..|++.++|.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56788999874 4679999999999999999999999999999999999876 46899999999875
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
. ...++..+.+||+..+....||+|-+.++..-... .....+..+.++++|+..++.++..+. ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 4 34566779999999988789999999998543211 111124445678999999999888765 35699999
Q ss_pred HHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1013 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1013 rqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++-||.+. ...+||++++|.+ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 346999999999999999999999999999999999999999986 6789999999986 79
Q ss_pred EEEecCCC
Q 001108 1087 EIYVGPLG 1094 (1156)
Q Consensus 1087 ~~~~g~~~ 1094 (1156)
++..|++.
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 99999864
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=321.85 Aligned_cols=195 Identities=41% Similarity=0.730 Sum_probs=166.7
Q ss_pred eEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 001108 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1156)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1156)
.+.|+||++.++.. +..+.+|+|+|+++++|++++|+|||||||||||++
T Consensus 3 ~~~~~~~~~~~~~~------------------------------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~ 52 (202)
T cd03233 3 TLSWRNISFTTGKG------------------------------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKA 52 (202)
T ss_pred eEEEEccEEEeccC------------------------------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHH
Confidence 47899999998541 133469999999999999999999999999999999
Q ss_pred HhcCCC---CCCCceeEEEEcCccCCCc--CccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHh
Q 001108 198 LAGKLD---PTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1156)
Q Consensus 198 L~G~~~---~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (1156)
|+|.++ |+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++++..
T Consensus 53 l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------ 111 (202)
T cd03233 53 LANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------ 111 (202)
T ss_pred hcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc------------------
Confidence 999998 66 99999999987643 23467999999999999999999998754210
Q ss_pred cCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCC
Q 001108 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (1156)
Q Consensus 273 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEpts 352 (1156)
.+..+..||||||||++||++|+.+|+++||||||+
T Consensus 112 --------------------------------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~ 147 (202)
T cd03233 112 --------------------------------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147 (202)
T ss_pred --------------------------------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCc
Confidence 112234699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEc
Q 001108 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1156)
Q Consensus 353 gLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1156)
|||+.++..+.+.|+++....+.++|+++||+..++.+.+|++++|++|++++.|
T Consensus 148 ~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 148 GLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999998865335677787888888999999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=384.63 Aligned_cols=258 Identities=26% Similarity=0.398 Sum_probs=198.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.+..++|+.++++.+++. .........+.....++|+||++.++.
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~-----~~~~~~~~~~~~~~~I~~~~vsf~Y~~--------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVER-----PEGTRFLHRPRLQGEIEFRNVSFAYPG--------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CCCCCCCCCCCccceEEEEEEEEEeCC---------------------------
Confidence 678888899998888776541 000000011112347999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 476 -----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 476 -----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred -----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 1124899999999999999999999999999999999999998 9999999999877654 5789999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++.. ....+.+.++++. .+ .+.. +-.|++..||
T Consensus 548 ~~lf-~~TI~eNi~~~~~----~~~~~~i~~a~~~---~~------------------------l~~~--i~~lp~gl~T 593 (694)
T TIGR03375 548 PRLF-YGTLRDNIALGAP----YADDEEILRAAEL---AG------------------------VTEF--VRRHPDGLDM 593 (694)
T ss_pred hhhh-hhhHHHHHhCCCC----CCCHHHHHHHHHH---cC------------------------hHHH--HHhCcccccc
Confidence 7655 5799999987631 1111222222211 10 1111 2247888999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .||||||||++||||++.+|++++||||||+||+.++..|.+.|+++. .++|+|+ ++|.. ++.+.||+
T Consensus 594 ~i~e~G~-~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~ii-ItHrl-~~~~~~D~ 668 (694)
T TIGR03375 594 QIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVL-VTHRT-SLLDLVDR 668 (694)
T ss_pred eecCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEE-EecCH-HHHHhCCE
Confidence 9998764 699999999999999999999999999999999999999999998764 3456655 44443 56789999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++++
T Consensus 669 iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=344.22 Aligned_cols=256 Identities=27% Similarity=0.395 Sum_probs=202.3
Q ss_pred hHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCC
Q 001108 81 RQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPS 160 (1156)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 160 (1156)
++.+-.|+-+.+.+.++ ...++.+|-|+..+..|++++--
T Consensus 305 Ar~s~~Rl~~lL~~~p~--------~~~~m~LP~P~g~L~Ve~l~~~P-------------------------------- 344 (580)
T COG4618 305 ARQSYKRLNELLAELPA--------AAERMPLPAPQGALSVERLTAAP-------------------------------- 344 (580)
T ss_pred HHHHHHHHHHHHHhCcc--------ccCCCCCCCCCceeeEeeeeecC--------------------------------
Confidence 44444555544444433 33467888899999999999831
Q ss_pred CcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc---ceEEEEcCCCCC
Q 001108 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNH 237 (1156)
Q Consensus 161 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~ 237 (1156)
...++++|+|+||.+.+|+-++|+||||||||||.++|.|..+|. +|.|.+||.+++++++. +.+||.||+ +-
T Consensus 345 Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQd-Ve 420 (580)
T COG4618 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQD-VE 420 (580)
T ss_pred CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCccc-ce
Confidence 113357999999999999999999999999999999999999998 99999999999888764 789999995 55
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++..||.|||. |+.. ....+.+.++++.... .++ ++.|++++||.||
T Consensus 421 LF~GTIaeNIa---Rf~~-~~d~~kIieAA~lAgv---------------------------Hel--Il~lP~GYdT~iG 467 (580)
T COG4618 421 LFDGTIAENIA---RFGE-EADPEKVIEAARLAGV---------------------------HEL--ILRLPQGYDTRIG 467 (580)
T ss_pred ecCCcHHHHHH---hccc-cCCHHHHHHHHHHcCh---------------------------HHH--HHhCcCCccCccC
Confidence 55679999995 2221 1122333333333211 111 5789999999999
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+.+. +||||||||+++||||+++|.+++||||-|.||+.....+.+.|.+... .++|+|+. + |++.+...+|+|++
T Consensus 468 ~~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvvi-a-HRPs~L~~~Dkilv 543 (580)
T COG4618 468 EGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVI-A-HRPSALASVDKILV 543 (580)
T ss_pred CCCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEE-e-cCHHHHhhcceeee
Confidence 8765 7999999999999999999999999999999999999999999988643 45555553 3 46789999999999
Q ss_pred EcCCeEEEEcChhHHHHHHH
Q 001108 398 LSDGQIVYQGPRELVLEFFA 417 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~ 417 (1156)
|++|++-.+|+++|++....
T Consensus 544 l~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 544 LQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred ecCChHHhcCCHHHHHHHhc
Confidence 99999999999999987543
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=375.00 Aligned_cols=256 Identities=24% Similarity=0.372 Sum_probs=193.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++..+..+|+.++++.+++ ..+.. .........+++|+|+++.++.
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~-----~~~~~-~~~~~~~~~~i~~~~v~f~y~~--------------------------- 350 (574)
T PRK11160 304 LGQVIASARRINEITEQKPE-----VTFPT-TSTAAADQVSLTLNNVSFTYPD--------------------------- 350 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCC-----CCCCc-ccCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 45667778888877766544 11000 0011122457999999999732
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
.+.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|++||.++++... ++.++||+|+
T Consensus 351 -----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 422 (574)
T PRK11160 351 -----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQR 422 (574)
T ss_pred -----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEccc
Confidence 1124899999999999999999999999999999999999998 9999999999877654 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++.. ....+.+.++.+. .+ .++. .-. +++.||
T Consensus 423 ~~lf-~~ti~~Ni~~~~~----~~~~~~i~~al~~---~~------------------------l~~~--i~~-p~GldT 467 (574)
T PRK11160 423 VHLF-SATLRDNLLLAAP----NASDEALIEVLQQ---VG------------------------LEKL--LED-DKGLNA 467 (574)
T ss_pred chhh-cccHHHHhhcCCC----ccCHHHHHHHHHH---cC------------------------CHHH--HcC-ccccCc
Confidence 7655 5799999988641 1111111211111 00 0111 123 678899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+.+. .||||||||++|||+++++|++|+||||||+||+.++..|.+.|++.. .++|+|++. |.. +....||+
T Consensus 468 ~vge~g~-~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiit-Hr~-~~~~~~d~ 542 (574)
T PRK11160 468 WLGEGGR-QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMIT-HRL-TGLEQFDR 542 (574)
T ss_pred hhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEe-cCh-hHHHhCCE
Confidence 9998654 699999999999999999999999999999999999999999998863 355666644 443 34567999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++++
T Consensus 543 i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 543 ICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999865
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=338.05 Aligned_cols=217 Identities=24% Similarity=0.327 Sum_probs=176.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ...+.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67889988874210 001358999999999999999999999999999999999876 56899999998753
Q ss_pred h-------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 001108 936 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~ 1005 (1156)
. ...++.++|++|++ .+++ .||+||+.|..... ....++.++.++++++.++|.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 23456799999996 3444 69999998865432 1233444556788999999963 44544 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999986 47788999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 88888874
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=333.11 Aligned_cols=219 Identities=21% Similarity=0.259 Sum_probs=179.3
Q ss_pred CCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEE
Q 001108 851 FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNI 927 (1156)
Q Consensus 851 ~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i 927 (1156)
..+..++++|+++.++ +..+|+|+||+|++||++||+||||||||||+++|+|... + .+.+|+|
T Consensus 9 ~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 3445689999998874 2368999999999999999999999999999999999753 1 1358999
Q ss_pred EEcCccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----cccc
Q 001108 928 TISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQS 998 (1156)
Q Consensus 928 ~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~ 998 (1156)
.++|.++.. ..+++.++|++|++.+++ .|++||+.+...... ..+.+..++.++++++.+++.+ ..+.
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc
Confidence 999987531 234567999999988877 899999988654321 1233344567889999999843 2333
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 999 ~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
. +..||||||||++||+||+.+|+||+|||||+|||+.++..+++.|+++. ++.|||++||++. ++.+.+|++
T Consensus 153 ~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i 225 (260)
T PRK10744 153 S-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYT 225 (260)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEE
Confidence 2 35799999999999999999999999999999999999999999999986 4789999999986 477889999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |+++..|+.
T Consensus 226 ~~l~~-G~i~~~g~~ 239 (260)
T PRK10744 226 AFMYL-GELIEFGNT 239 (260)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 688888874
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=326.26 Aligned_cols=198 Identities=31% Similarity=0.454 Sum_probs=166.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc--CccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999998 99999999887542 124679999999988898999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+... .+....++++++.+||++..+..+ +.
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 999987653322100 001224567889999987766554 46
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+||.++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 44556677888899999999999999999
Q ss_pred EEEc
Q 001108 404 VYQG 407 (1156)
Q Consensus 404 v~~G 407 (1156)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=330.76 Aligned_cols=219 Identities=21% Similarity=0.284 Sum_probs=175.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC---CCCeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|.. .+.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477889988773 246999999999999999999999999999999999962 2112479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+...+.++++++.+++.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87642 234567999999988876 6999999886543311 11223445678899999986422111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++.+.||++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5899999999987 47788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999874
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=336.17 Aligned_cols=214 Identities=28% Similarity=0.356 Sum_probs=178.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++ +++.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56888888773 12358999999999999999999999999999999999865 46899999998763
Q ss_pred h-----hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ...++.++|++|++. .+...||.||+.+..... ....++..+.+.++++.++|.++.++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 333579999998764321 1233445567889999999988877763 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 47778999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8874
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=331.29 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=176.6
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC---CCeEEEEEEEc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITIS 930 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~ 930 (1156)
..++++|++++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... ..+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999998874 2359999999999999999999999999999999999742 11358999999
Q ss_pred CccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
|.++.. ..+++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+........ .+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 987632 234567999999988887 5999999887543321 12233456678899999985421111111 14
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||+++|+++ ++.+.||++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 47788999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 88888764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=331.53 Aligned_cols=204 Identities=25% Similarity=0.387 Sum_probs=170.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-----------CccceEEEEcCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----------VPQRTAAYISQH 234 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-----------~~~~~~~yv~Q~ 234 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 4899999999999999999999999999999999999988 99999999887532 123579999999
Q ss_pred CCCCCCCCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 235 DNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
+.+++.+||+||+.++... .+. .. .+....++.+++.+||+...|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGE-PK---------------------------------EEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCC-CH---------------------------------HHHHHHHHHHHHHcCCcchhh
Confidence 8889899999999885421 110 00 001123566788999987666
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
+.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. .+ .+||.++|+..++.+++|
T Consensus 140 ~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 140 SYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EK-RTMVIVTHEMSFARDVAD 212 (250)
T ss_pred CCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcC
Confidence 544 46999999999999999999999999999999999999999999998764 34 455567888889999999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001108 394 DIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++|++++.|+++++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=334.26 Aligned_cols=223 Identities=23% Similarity=0.294 Sum_probs=179.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++...... ..+++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67889988874210000 0113579999999999999999999999999999999999876 56899999998754
Q ss_pred hh------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~~------~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
.. ..++.++|++|++ .+.+.+||+||+.+...... .......++.+.++++.+++. ...+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1345799999996 46678999999987543211 122334456688999999996 555554 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999986 47778999999985 7
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 89999875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=340.35 Aligned_cols=214 Identities=21% Similarity=0.245 Sum_probs=175.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCC--
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD-- 235 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d-- 235 (1156)
..+|+||||+|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 459999999999999999999999999999999999998742238999999998865432 14799999997
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+.+.+||.+++.+.....+.... .+....+.++++.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~---------------------------------~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSK---------------------------------AEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCCChHHH-
Confidence 688999999999876543210000 0112245677889999764322
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+ ++.+++|||||||||+||+||+.+|++||+||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 2 3567789999999999999999999999999999999999999999999988653 3566777899999999999999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
++|++|+|++.|+.+++..
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998753
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=328.70 Aligned_cols=204 Identities=20% Similarity=0.345 Sum_probs=170.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~ 240 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 4999999999999999999999999999999999999988 99999999987542 124579999999888889
Q ss_pred CCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 241 MTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.|+... .+... .+....++++++.+||+...+..+
T Consensus 92 ~tv~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~--- 134 (240)
T PRK09493 92 LTALENVMFGPLRVRGASK----------------------------------EEAEKQARELLAKVGLAERAHHYP--- 134 (240)
T ss_pred CcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChHHHhcCh---
Confidence 9999999886421 11000 001123567888999987666544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
+.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. .+ ++||.++|+..++.++||++++|+
T Consensus 135 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~ 210 (240)
T PRK09493 135 --SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG-MTMVIVTHEIGFAEKVASRLIFID 210 (240)
T ss_pred --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998753 34 455567788889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (240)
T PRK09493 211 KGRIAEDGDPQVLI 224 (240)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=373.78 Aligned_cols=253 Identities=19% Similarity=0.226 Sum_probs=194.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.....+|+.++++.+++. . +....+....+++|+|+++.++.
T Consensus 308 ~~~~~~s~~ri~~~l~~~~~~------~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 352 (592)
T PRK10790 308 LQQAVVAGERVFELMDGPRQQ------Y--GNDDRPLQSGRIDIDNVSFAYRD--------------------------- 352 (592)
T ss_pred HHHHHHHHHHHHHHhcCCCcc------C--CCCccCCCCCeEEEEEEEEEeCC---------------------------
Confidence 457778888888877654431 0 00011112346999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+ .++|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++..+ ++.++||+|+
T Consensus 353 ---~---~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~ 423 (592)
T PRK10790 353 ---D---NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423 (592)
T ss_pred ---C---CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccC
Confidence 1 23999999999999999999999999999999999999998 9999999999877654 5789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+|+ .|++|||.++.. ...+.+.++++. .+ .++.++ .|+++.||
T Consensus 424 ~~lF~-~Ti~~NI~~~~~-----~~d~~i~~a~~~---~g------------------------l~~~i~--~lp~Gldt 468 (592)
T PRK10790 424 PVVLA-DTFLANVTLGRD-----ISEEQVWQALET---VQ------------------------LAELAR--SLPDGLYT 468 (592)
T ss_pred Ccccc-chHHHHHHhCCC-----CCHHHHHHHHHH---cC------------------------cHHHHH--hccccccc
Confidence 87665 599999998631 111222222211 11 111222 26778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .||||||||++|||||+++|+|++||||||+||+.++..|.+.|+++. .++|+|+..|++ +....||+
T Consensus 469 ~i~e~g~-~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ 543 (592)
T PRK10790 469 PLGEQGN-NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADT 543 (592)
T ss_pred cccCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCE
Confidence 9998654 699999999999999999999999999999999999999999998764 346666644433 66778999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++..|+++++++
T Consensus 544 ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 544 ILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=335.41 Aligned_cols=205 Identities=28% Similarity=0.384 Sum_probs=169.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1156)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 4899999999999999999999999999999999999998 9999999998765332 45799999986 367778
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+|||.|+....+... .+....++++++.+||.+..++.++
T Consensus 98 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~---- 139 (279)
T PRK13635 98 TVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREPH---- 139 (279)
T ss_pred cHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc----
Confidence 99999998754322100 0112246778899999877776554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.. ..+++|+.++|+..++. .+|+|++|++|
T Consensus 140 -~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~~~~~-~~d~i~~l~~G 216 (279)
T PRK13635 140 -RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDLDEAA-QADRVIVMNKG 216 (279)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH-cCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999998765 32445555667777775 59999999999
Q ss_pred eEEEEcChhHHHH
Q 001108 402 QIVYQGPRELVLE 414 (1156)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1156)
++++.|+.+++..
T Consensus 217 ~i~~~g~~~~~~~ 229 (279)
T PRK13635 217 EILEEGTPEEIFK 229 (279)
T ss_pred EEEEECCHHHHhc
Confidence 9999999987753
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=333.32 Aligned_cols=216 Identities=28% Similarity=0.405 Sum_probs=178.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 46788887763 3469999999999999999999999999999999999865 46899999998754
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHH-hhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
. ...++.++|++|++.+++.+||+||+.+... .+........+..+.+.++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 2 2334568999999877788999999987531 110000111233456788999999987777653 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|+++ ++.+.||++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999997 47789999999986 6888888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 220 ~~ 221 (256)
T TIGR03873 220 PP 221 (256)
T ss_pred CH
Confidence 75
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=326.81 Aligned_cols=203 Identities=34% Similarity=0.544 Sum_probs=164.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1156)
+++|+|+|+++++|++++|+||||||||||+++|+|.++ |+ +|+|.++|.++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 459999999999999999999999999999999999998 77 999999998875434457899999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHH-HHHHcCCcccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~~ 320 (1156)
||+||+.|+.......... ... .....+. .++.+++.+..++.
T Consensus 97 tv~enl~~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~l~~~~l~~~~~~~----- 140 (226)
T cd03234 97 TVRETLTYTAILRLPRKSS---DAI----------------------------RKKRVEDVLLRDLALTRIGGNL----- 140 (226)
T ss_pred cHHHHHHHHHHhhcccccc---hHH----------------------------HHHHHHHHHHHhhcchhhhccc-----
Confidence 9999999875432211000 000 0011233 67788887655544
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++..++.++||++++|++
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 456999999999999999999999999999999999999999999998754 3556666544444689999999999999
Q ss_pred CeEEEEc
Q 001108 401 GQIVYQG 407 (1156)
Q Consensus 401 G~iv~~G 407 (1156)
|+++++|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=346.38 Aligned_cols=203 Identities=22% Similarity=0.309 Sum_probs=175.4
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc----cCCh---hc----ccceEEEec
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY----PKKQ---ET----FARISGYCE 947 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~----~~~~---~~----~~~~~gyv~ 947 (1156)
+...+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|. ++.. .. .++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999876 56899999995 2211 11 125799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 948 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 948 q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
|++.+++.+||+||+.|+...+ ..+..+.++.+.++++.++|.+..+..+ ..||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886543 2334556677899999999988877764 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999764 999999999987 57889999999986 689999885
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=385.27 Aligned_cols=261 Identities=22% Similarity=0.275 Sum_probs=196.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCC-CCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI-DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
.++....++|+.++++.+++.-............. +.....++|+||++.+..
T Consensus 436 ~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-------------------------- 489 (710)
T TIGR03796 436 LQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC--------------------------
Confidence 56788888999888877655100000000000000 112357999999999842
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
..+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|
T Consensus 490 ------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 490 ------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred ------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 1134899999999999999999999999999999999999998 9999999999876653 578999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
++.+| +.|++|||.++. +....+.+.++++.. + .++. +..|+.+.|
T Consensus 561 ~~~lf-~gTi~eNi~l~~----~~~~~~~i~~al~~~---~------------------------l~~~--i~~lp~gl~ 606 (710)
T TIGR03796 561 DIFLF-EGTVRDNLTLWD----PTIPDADLVRACKDA---A------------------------IHDV--ITSRPGGYD 606 (710)
T ss_pred CChhh-hccHHHHhhCCC----CCCCHHHHHHHHHHh---C------------------------CHHH--HHhCcCccc
Confidence 87655 679999998752 111122222222111 1 0111 224777889
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.+|+.+ .+||||||||++|||||+++|++|+||||||+||+.++..|.+.|++ .++|+|+ ++|.. ++...||
T Consensus 607 t~i~e~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl-~~i~~~D 679 (710)
T TIGR03796 607 AELAEGG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRL-STIRDCD 679 (710)
T ss_pred ceeccCC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCH-HHHHhCC
Confidence 9999876 47999999999999999999999999999999999999999999975 3456555 45543 5667799
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001108 394 DIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|++|++|++++.|+++++++
T Consensus 680 ~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 680 EIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=317.84 Aligned_cols=190 Identities=59% Similarity=0.947 Sum_probs=162.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++.+. .++.+|+|+||+|++|++++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 478899998875210 12469999999999999999999999999999999999743224689999999876
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ..+++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 344567999999998889999999998753110 39999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++.++.+.||++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998644678899999998757888865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=348.17 Aligned_cols=206 Identities=24% Similarity=0.333 Sum_probs=175.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 45899999999999999999999999999999999999998 9999999998765432 2479999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.|+....+.... +....++++++.+||.+..++.+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~----------------------------------~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAE----------------------------------ERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCChhhhcCc-
Confidence 9999999999998654321100 01124567899999987666544
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.... +++||.++|+..++.+++|+|++
T Consensus 163 ----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 163 ----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999876533 44555678889999999999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001108 398 LSDGQIVYQGPRELVL 413 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1156)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999998764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=328.23 Aligned_cols=210 Identities=26% Similarity=0.320 Sum_probs=173.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35778887764 2469999999999999999999999999999999999876 56899999998754
Q ss_pred hh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCH
Q 001108 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+.++++++.++ +.+..+.. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 21 124569999999999999999999988654321 11 1233567777776 45555554 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 46778999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 213 ~~~~ 216 (230)
T TIGR03410 213 SGAG 216 (230)
T ss_pred ECCH
Confidence 8875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=384.77 Aligned_cols=257 Identities=24% Similarity=0.307 Sum_probs=196.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.+..++|+.++++.++|. .+.......+....+|+|+||++.++.
T Consensus 438 ~~~~~~~~~ri~~~l~~~~e~-----~~~~~~~~~~~~~~~I~~~~vsf~y~~--------------------------- 485 (708)
T TIGR01193 438 LQAARVANNRLNEVYLVDSEF-----INKKKRTELNNLNGDIVINDVSYSYGY--------------------------- 485 (708)
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cccccccCCCCCCCcEEEEEEEEEcCC---------------------------
Confidence 567788889998888766551 100000111223457999999999731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
..++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|+
T Consensus 486 ------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 486 ------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQE 556 (708)
T ss_pred ------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecC
Confidence 124899999999999999999999999999999999999998 9999999999876654 5789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.||+|||.++.+. ....+.+.++++.. + .++. +..|+.+.||
T Consensus 557 ~~lf-~gTI~eNi~l~~~~---~~~~~~i~~a~~~a---~------------------------l~~~--i~~lp~gldt 603 (708)
T TIGR01193 557 PYIF-SGSILENLLLGAKE---NVSQDEIWAACEIA---E------------------------IKDD--IENMPLGYQT 603 (708)
T ss_pred ceeh-hHHHHHHHhccCCC---CCCHHHHHHHHHHh---C------------------------CHHH--HHhcccccCc
Confidence 7655 56999999986321 11112222222211 1 1111 2247788899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+.+ .+||||||||++||||++++|++|+||||||+||+.++..+++.|+++ .++|+|+ ++|.. ++.+.||+
T Consensus 604 ~i~e~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~Ii-itHr~-~~~~~~D~ 677 (708)
T TIGR01193 604 ELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIF-VAHRL-SVAKQSDK 677 (708)
T ss_pred EecCCC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEE-Eecch-HHHHcCCE
Confidence 999865 479999999999999999999999999999999999999999999863 3456555 55543 56788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++++
T Consensus 678 i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 678 IIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=333.57 Aligned_cols=220 Identities=26% Similarity=0.343 Sum_probs=180.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEcCcc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1156)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478889988763 246999999999999999999999999999999999986532 236999999976
Q ss_pred CCh--------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-----CCCChHHHHHHHHHHHHHcCCCccccccc
Q 001108 934 KKQ--------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1156)
Q Consensus 934 ~~~--------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 1000 (1156)
+.. ...++.++|++|++.+++.+||+||+.+......+ .....++.+..++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999999999999999875321000 00112334567889999999987777653
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELF 1079 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~ 1079 (1156)
..||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||++||+++ .+.+.||+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999999975 4899999999986 4778899999
Q ss_pred EEecCcEEEEecCCC
Q 001108 1080 LMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1080 ~l~~Gg~~~~~g~~~ 1094 (1156)
+|.+ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9986 6888988753
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=323.79 Aligned_cols=191 Identities=27% Similarity=0.370 Sum_probs=160.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCC-CCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN-HIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~-~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .++.+||+
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4999999999999999999999999999999999999998 9999999988754333467999999863 35578999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++....+ . ....++++++.+||.+..++.+ ..|
T Consensus 91 e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 127 (205)
T cd03226 91 EELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERHP-----LSL 127 (205)
T ss_pred HHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCCc-----hhC
Confidence 99987642210 0 0013466788999987776655 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++. .+ .+|+.++|+..++.+++|++++|++|+++
T Consensus 128 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 128 SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QG-KAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999999999999998754 34 45555778888899999999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=331.39 Aligned_cols=225 Identities=23% Similarity=0.261 Sum_probs=181.6
Q ss_pred cCCCCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEE
Q 001108 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITG 925 (1156)
Q Consensus 849 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G 925 (1156)
+|..+..++++|++++++ .+.+|+||||+|++||++||+|+||||||||+++|+|...+ .+.+|
T Consensus 14 ~~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 80 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80 (267)
T ss_pred cCCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce
Confidence 444555799999998874 24699999999999999999999999999999999997642 14689
Q ss_pred EEEEcCccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccccc
Q 001108 926 NITISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1156)
Q Consensus 926 ~i~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 1000 (1156)
+|.++|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..++.+.++++.++|.+..+...
T Consensus 81 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~ 157 (267)
T PRK14237 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL 157 (267)
T ss_pred EEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999987632 123567999999988877 69999998864322 11123344566888999999854221112
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
..+ +..||||||||++|||||+.+|++|+|||||+|||+.++..+.++|+++. ++.|||++||+++ ++.+.||++++
T Consensus 158 ~~~-~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKS-ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cCC-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEE
Confidence 221 46799999999999999999999999999999999999999999999985 4799999999987 57789999999
Q ss_pred EecCcEEEEecCC
Q 001108 1081 MKRGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~~Gg~~~~~g~~ 1093 (1156)
|++ |++++.|+.
T Consensus 235 l~~-G~i~~~g~~ 246 (267)
T PRK14237 235 FYL-GDLIEYDKT 246 (267)
T ss_pred EEC-CEEEEeCCH
Confidence 985 689998875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=339.88 Aligned_cols=225 Identities=24% Similarity=0.247 Sum_probs=183.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++...... ...+...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478999998875321100 00123579999999999999999999999999999999999876 4589999999876
Q ss_pred Ch------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 001108 935 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~ 1005 (1156)
.. ..+++.+|||+|++ .+.|.+|+.+++.+..... ......+.++.+.++++.++|.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 42 12456799999998 5788899999998764432 12344556677899999999964 44554 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++|||||+.+|+|||+||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999986 36678999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 799999974
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=375.02 Aligned_cols=257 Identities=22% Similarity=0.367 Sum_probs=193.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.+..+...+|+.++.+.+++. ..+....+.+..+|+|+||++.++.
T Consensus 308 ~~~~~~~~~ri~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 353 (582)
T PRK11176 308 FQRGMAACQTLFAILDLEQEK-------DEGKRVIERAKGDIEFRNVTFTYPG--------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHhcCCCcC-------CCCCcCCCCCCCeEEEEEEEEecCC---------------------------
Confidence 345566777777766544330 0011111222346999999998742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 354 -----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 425 (582)
T PRK11176 354 -----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQN 425 (582)
T ss_pred -----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccC
Confidence 1134999999999999999999999999999999999999998 9999999999877653 4789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++..- ....+.+.++++.. + .+..+ -.|+++.||
T Consensus 426 ~~lf-~~Ti~~Ni~~~~~~---~~~~~~i~~al~~~---~------------------------l~~~i--~~lp~Gldt 472 (582)
T PRK11176 426 VHLF-NDTIANNIAYARTE---QYSREQIEEAARMA---Y------------------------AMDFI--NKMDNGLDT 472 (582)
T ss_pred ceee-cchHHHHHhcCCCC---CCCHHHHHHHHHHh---C------------------------cHHHH--HhcccccCc
Confidence 7666 57999999876310 01112222221110 0 11112 237788999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ +.||||||||++|||||+++|++++||||||+||+.++..+++.|+++. .++|+|+ ++|.. +..+.||+
T Consensus 473 ~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~-VtHr~-~~~~~~D~ 547 (582)
T PRK11176 473 VIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEKADE 547 (582)
T ss_pred eeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCCE
Confidence 999875 4699999999999999999999999999999999999999999998753 3455555 44443 67788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++.+
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999998864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=323.45 Aligned_cols=196 Identities=31% Similarity=0.465 Sum_probs=165.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 4999999999999 99999999999999999999999998 999999998875432 24679999999988999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.+.....+... .+....++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKIG-----S 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCchh-----h
Confidence 999988654322100 0011235677889999877776554 6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++. + ++|+.++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 5566678888899999999999999999
Q ss_pred EEEc
Q 001108 404 VYQG 407 (1156)
Q Consensus 404 v~~G 407 (1156)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=335.61 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=170.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC--c---CccceEEEEcCCCC-CCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (1156)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 4999999999999999999999999999999999999998 9999999998741 1 12467999999863 345
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
..||+||+.++....+... .+....++++++.+||.+..++.+
T Consensus 97 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 139 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKPT--- 139 (283)
T ss_pred cccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCCc---
Confidence 6899999988653321100 001124577889999987666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+..++.++||+|++|+
T Consensus 140 --~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 140 --HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG-LTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998865334 455557888889999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988753
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=326.20 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=179.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
+.++|+++.++ .+.+|+|+|++|++|++++|+|+||||||||+++|+|... +..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 35778887763 2469999999999999999999999999999999999876 46899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.+||++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+..+ ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 31 124579999999998888999999987654331 223344556788999999988777653 579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+.||++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999998764 899999999986 47788999999986 688888763
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=324.04 Aligned_cols=222 Identities=26% Similarity=0.357 Sum_probs=191.8
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (1156)
...-++|+|+.++.||+..|||-||||||||+++|.++.+|+ +|+|+++|.++..... ++.++.|+|...
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345689999999999999999999999999999999999998 9999999999866543 367999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1156)
++|+.||.||..|+...+|.... +.+.++.+.|+..||....+.+.
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCc
Confidence 99999999999999999886432 12345677899999999887654
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
++||||+||||.|||||+.+|+|||||||+|+|||--+.++.+.|.++-...+ .+|+.++|+..|++++.|||.
T Consensus 163 -----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~-KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 163 -----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred -----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC-CeEEEEecCHHHHHhccceEE
Confidence 57999999999999999999999999999999999999999988877765444 455668999999999999999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChHHHHHhh
Q 001108 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 436 (1156)
+|.+|+||..|+++|++. .|...-+++|..++
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999864 45555556666544
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=339.06 Aligned_cols=220 Identities=18% Similarity=0.236 Sum_probs=180.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC-C-eEEEEEEEcCcc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGYP 933 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~-~~~G~i~i~g~~ 933 (1156)
++++|++..++.+. +...+|+||||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDES---------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCCC---------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 68899988875321 125699999999999999999999999999999999997642 2 368999999987
Q ss_pred CChh---c----ccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc---cccccC
Q 001108 934 KKQE---T----FARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSLVG 1001 (1156)
Q Consensus 934 ~~~~---~----~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~~~ 1001 (1156)
+... . +++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.++|.+. .+..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 6421 1 123699999998 47888999998876543321 12345556778999999999753 2333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
+.+|||||||||+||+||+.+|+|||+||||+|||+.++..++++|+++.+ .|.|||++|||++ .+.+.+|++++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 357999999999999999999999999999999999999999999999976 4999999999987 46788999999
Q ss_pred EecCcEEEEecCC
Q 001108 1081 MKRGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~~Gg~~~~~g~~ 1093 (1156)
|.+ |+++..|+.
T Consensus 227 m~~-G~ive~g~~ 238 (326)
T PRK11022 227 MYA-GQVVETGKA 238 (326)
T ss_pred EEC-CEEEEECCH
Confidence 985 799999974
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=318.89 Aligned_cols=196 Identities=30% Similarity=0.581 Sum_probs=162.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEcCcc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1156)
.++|+|++|.|+.+. +++.+|+|+||+|++||++||+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~---------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGR---------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCC---------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 578999999997531 3457999999999999999999999999999999999986522 568999999987
Q ss_pred CCh--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 934 ~~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999998753211 1222 3469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||++||+||+.+|++|||||||+|||+.+++.+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 677777766543357889999999986 677765
Q ss_pred c
Q 001108 1091 G 1091 (1156)
Q Consensus 1091 g 1091 (1156)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=331.58 Aligned_cols=216 Identities=23% Similarity=0.266 Sum_probs=177.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++|++++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999998874 24699999999999999999999999999999999997642 13689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc----cccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~~~~ 1002 (1156)
.++.. ..+++.+||++|++.+++. ||.||+.|....+.. ........+.++++++.+++.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 2345679999999888774 999999987543321 11223345567889999999642 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ .+.+.||++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 789999999987 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 6 688888864
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=321.67 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=161.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC---h----hcccceEEEeccCCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 953 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~q~~~~~ 953 (1156)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999876 56899999998742 1 12356799999999988
Q ss_pred CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001108 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1156)
Q Consensus 954 ~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDE 1033 (1156)
+.+|++||+.+....+ ........+.++++++.+++.+..++.+ ..||+|||||++||+||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8899999999865432 1223344567889999999987777653 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
||+|||+.++..+++.|+++.++|.|||+++|++. +.+.||++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999985 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=344.72 Aligned_cols=209 Identities=25% Similarity=0.300 Sum_probs=176.0
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc----cCCCcCc-------cceEEEE
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH----DMDEFVP-------QRTAAYI 231 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~----~~~~~~~-------~~~~~yv 231 (1156)
....+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|+++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3332211 2479999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
+|+..+++.+||+||+.|+....+... .+....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865433210 0112345678999999887
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
.|..++ .|||||||||+|||+|+.+|+||||||||+|||+.++.++.+.|+++.... +.+|+.++|+..++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 776554 699999999999999999999999999999999999999999999876533 45556688899999999
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|+|++|++|+++..|+++++..
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999988753
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=333.76 Aligned_cols=215 Identities=24% Similarity=0.309 Sum_probs=179.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 4789999887741 12468999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.+||++|++. .++.+||+||+.+..... ....++.+..++++++.++|.+..++.+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998864322 1233444567889999999988777663 57999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ ++|||+++|+++. + ..||++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 5999999999863 4 57999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8874
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=322.38 Aligned_cols=209 Identities=23% Similarity=0.308 Sum_probs=173.6
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ .+++|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccc
Confidence 5677777663 13679999999999999999999999999999999876 468999999987643
Q ss_pred -hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 -~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
...++.++|++|++.+++.+|++||+.+...... .. ....++.++++++.+++.+..++.+ ..||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KL-NAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--Cc-cHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHH
Confidence 2345679999999999988999999987543211 11 1223456788999999987777653 5799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 99999999999999999999999999999999999998764 899999999986 46778999999985 68887764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=329.87 Aligned_cols=194 Identities=21% Similarity=0.303 Sum_probs=164.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 4999999999999999999999999999999999999998 9999999987543 2467999999988888899999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.++... . . ...++.+++.+||.+..+..+ ..||
T Consensus 101 nl~~~~~~-----~------~-----------------------------~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----Q------W-----------------------------RDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhcccc-----h------H-----------------------------HHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 99875310 0 0 012456788899987666544 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++....+ .+|+.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999998765334 455557888888999999999999999999
Q ss_pred EcChh
Q 001108 406 QGPRE 410 (1156)
Q Consensus 406 ~G~~~ 410 (1156)
.|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=339.14 Aligned_cols=224 Identities=20% Similarity=0.296 Sum_probs=181.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-eEEEEEEEcCcc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1156)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47899998877532 12356999999999999999999999999999999999986531 238999999987
Q ss_pred CCh---hc---c-cceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001108 934 KKQ---ET---F-ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1156)
Q Consensus 934 ~~~---~~---~-~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~ 1004 (1156)
+.. .. + .+.++||+|++ .+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+.....
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-- 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMY-- 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCC--
Confidence 642 11 2 24799999998 67889999999987654432 234445566788999999997533221111
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||++||+||+.+|+|||+||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4679999999999999999999999999999999999999999999999765 999999999987 46678999999985
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 799999984
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=328.65 Aligned_cols=200 Identities=26% Similarity=0.380 Sum_probs=167.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ...++|++|++.+++.+||+|
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHH
Confidence 4999999999999999999999999999999999999998 99999999987542 346899999988888999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.++....+... .+....++.+++.+||.+..++.+ ..||
T Consensus 90 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 130 (255)
T PRK11248 90 NVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQLS 130 (255)
T ss_pred HHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhCC
Confidence 9988653221100 001123567888999987666544 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc--CCeE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~--~G~i 403 (1156)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++... +++||.++|+..++.++||+|++|+ +|++
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence 999999999999999999999999999999999999999999875433 4455567888899999999999998 5999
Q ss_pred EEEcChh
Q 001108 404 VYQGPRE 410 (1156)
Q Consensus 404 v~~G~~~ 410 (1156)
+..++.+
T Consensus 210 ~~~~~~~ 216 (255)
T PRK11248 210 VERLPLN 216 (255)
T ss_pred EEEecCC
Confidence 9988654
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=326.84 Aligned_cols=220 Identities=21% Similarity=0.278 Sum_probs=177.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--CC-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478899988874 2469999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ..+++.++|++|++.+++.+|++||+.+...... .....+.++.++++++.+++.......... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87532 2345679999999999999999999987643321 112233445678899999986421111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|.+ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999986 47789999999985 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 8888874
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=327.52 Aligned_cols=198 Identities=23% Similarity=0.376 Sum_probs=166.5
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..... ..+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 568999999987643211 2489999999999999999998
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~ 1043 (1156)
+...... .....++.++.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 12233444566889999999987766653 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1044 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1044 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 47788999999986 688877753
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=327.92 Aligned_cols=219 Identities=21% Similarity=0.264 Sum_probs=176.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC-CeEEEEEEEcCccC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 934 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 934 (1156)
+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+..|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56788888774 24699999999999999999999999999999999997532 24689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.. ..+++.++|++|++.+++ .|++||+.+....+.... .....++.++++++.+++.+........ .+..||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQ-NALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcC-CcccCCHH
Confidence 43 234567999999988887 699999988754432111 1223445678899999995422111111 14579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 47788999999986 6899888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 74
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=325.67 Aligned_cols=201 Identities=26% Similarity=0.352 Sum_probs=165.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 5999999999999999999999999999999999999998 9999999988754332 35699999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcC-Ccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~~ 320 (1156)
||+||+.++....+.. . ....+.+++.++ +....++.
T Consensus 91 tv~~~l~~~~~~~~~~-~------------------------------------~~~~~~~l~~~~~l~~~~~~~----- 128 (230)
T TIGR03410 91 TVEENLLTGLAALPRR-S------------------------------------RKIPDEIYELFPVLKEMLGRR----- 128 (230)
T ss_pred cHHHHHHHHHHhcCcc-h------------------------------------HHHHHHHHHHHHhHHHHhhCC-----
Confidence 9999998875432100 0 011234455555 44444443
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
++.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++. .+++|+.++|+..++.+++|+|++|.+
T Consensus 129 ~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~ 207 (230)
T TIGR03410 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVMER 207 (230)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4569999999999999999999999999999999999999999999987642 344555577888899999999999999
Q ss_pred CeEEEEcChhHH
Q 001108 401 GQIVYQGPRELV 412 (1156)
Q Consensus 401 G~iv~~G~~~~~ 412 (1156)
|++++.|+.+++
T Consensus 208 g~i~~~~~~~~~ 219 (230)
T TIGR03410 208 GRVVASGAGDEL 219 (230)
T ss_pred CEEEEECCHHHc
Confidence 999999998875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=324.30 Aligned_cols=201 Identities=27% Similarity=0.347 Sum_probs=162.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCC--CC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--NH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d--~~ 237 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999998 999999999876533 245799999987 46
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1156)
++.+||+||+.+.....+.....+ ......+.+++.++|. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKKE--------------------------------ARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHHH--------------------------------HHHHHHHHHHHHCCCChhHhhCCc
Confidence 678999999988654321100000 0001124567888885 4445443
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+ ++||.++|+..++.+++|+|+
T Consensus 144 -----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 -----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEE
Confidence 46999999999999999999999999999999999999999999998765324 455557788888889999999
Q ss_pred EEcCCeEEEEc
Q 001108 397 LLSDGQIVYQG 407 (1156)
Q Consensus 397 lL~~G~iv~~G 407 (1156)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=332.64 Aligned_cols=215 Identities=24% Similarity=0.288 Sum_probs=179.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 5889999988741 11358999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.++|++|++. +++..|+.+|+.|..... ....+...+.++++++.+++.+..+.. +..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 667789999998864332 123344456688999999998777665 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++. +. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 8999999999873 55 4999999986 68999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 223 ~g~~ 226 (269)
T PRK13648 223 EGTP 226 (269)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=336.77 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=177.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++.... ....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKTP--------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCCc--------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 5889999988742100 01258999999999999999999999999999999999876 4689999999765
Q ss_pred C--------hhcccceEEEeccCCCC-CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 001108 935 K--------QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPG 1004 (1156)
Q Consensus 935 ~--------~~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~ 1004 (1156)
. ...+++.++|++|++.. ....|++||+.|..... ....+...+.+.++++.++|. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999742 22469999998864322 123334445678899999994 555554
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.||++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999875 4899999999987 57789999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 688888874
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=325.89 Aligned_cols=213 Identities=26% Similarity=0.388 Sum_probs=179.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++.+||++||+||||||||||+++|+|... +..|+|.++|.++.
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 35678877764 2469999999999999999999999999999999999865 46899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+||+|
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 234579999999998888999999987654331 222334456788999999987777653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++||++|+.+|++++|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999999999999998765 899999999986 47788999999985 688888874
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=335.29 Aligned_cols=219 Identities=22% Similarity=0.295 Sum_probs=180.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++.... ...+.+|+||||+|++||+++|+|+||||||||+++|+|... +..|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 3788999988852100 012469999999999999999999999999999999999876 5689999999876
Q ss_pred Ch----hcccceEEEeccCCCC-CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 935 KQ----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~----~~~~~~~gyv~q~~~~-~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ...++.+||++|++.. +...||.|++.|..... .....+.++.++++++.++|.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 2345679999999742 33469999999875432 2233455667899999999988877764 5799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++ |+|||+++|+++. +. .||++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 9999999999873 54 5999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 88874
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=402.16 Aligned_cols=263 Identities=21% Similarity=0.287 Sum_probs=199.2
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCC-----CCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHH
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-----LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDIL 152 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 152 (1156)
.+.+++..+|+.++++..++ +..+ +.-+.+ ....+|+|+||+|.|..
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~-----~~~~-~~~~~~~~~~~~~~g~I~f~nVsF~Y~~---------------------- 1177 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSN-----IDVR-DNGGIRIKNKNDIKGKIEIMDVNFRYIS---------------------- 1177 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCc-----CCCC-CCcccccccCCCCCceEEEEEEEEECCC----------------------
Confidence 56778888888888876442 1000 001111 12357999999999842
Q ss_pred hhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------------
Q 001108 153 NYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--------------------------- 205 (1156)
Q Consensus 153 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--------------------------- 205 (1156)
+ ...+||+|+|++|+||+.+||+||||||||||+++|+|+++|+
T Consensus 1178 --------~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1178 --------R-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred --------C-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 1 1235999999999999999999999999999999999999982
Q ss_pred ------------------------CCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 001108 206 ------------------------LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (1156)
Q Consensus 206 ------------------------~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (1156)
...+|+|++||+++.+... ++.+|||+|++.+| +.||+|||.|+.. ..
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~----~a 1323 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE----DA 1323 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC----CC
Confidence 0138999999999877654 57899999987655 6899999999742 12
Q ss_pred hhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHH
Q 001108 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (1156)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al 338 (1156)
..+.+.++++.... ++. +..|++++||.||+.+. .||||||||++|||||
T Consensus 1324 t~eeI~~A~k~A~l---------------------------~~f--I~~LP~GydT~VGe~G~-~LSGGQkQRIaIARAL 1373 (1466)
T PTZ00265 1324 TREDVKRACKFAAI---------------------------DEF--IESLPNKYDTNVGPYGK-SLSGGQKQRIAIARAL 1373 (1466)
T ss_pred CHHHHHHHHHHcCC---------------------------HHH--HHhCccccCCccCCCCC-cCCHHHHHHHHHHHHH
Confidence 22333333332211 111 23689999999998765 5999999999999999
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC----CeEE-EEcChhHHH
Q 001108 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD----GQIV-YQGPRELVL 413 (1156)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~----G~iv-~~G~~~~~~ 413 (1156)
+++|+||+||||||+||+.++..|.+.|+++....++|+|+ +.|. .++.+.||+|++|++ |+++ ++|++++++
T Consensus 1374 lr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIi-IaHR-lsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT-IAHR-IASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEE-Eech-HHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999998864223456555 4444 467788999999999 9955 899999986
Q ss_pred H
Q 001108 414 E 414 (1156)
Q Consensus 414 ~ 414 (1156)
+
T Consensus 1452 ~ 1452 (1466)
T PTZ00265 1452 S 1452 (1466)
T ss_pred h
Confidence 4
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=328.67 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=174.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367889988773 2468999999999999999999999999999999999865 4689999999875
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.++|++|++.+++ .|++||+.+....+ . .....+.++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988776 69999998754322 1 1124577899999996 455554 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 999999999987 47788999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=380.57 Aligned_cols=256 Identities=22% Similarity=0.342 Sum_probs=190.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.....+|+.+.++.+++. .+. .....+.....|+|+||++.++.
T Consensus 444 ~~~~~~a~~ri~~~l~~~~~~-----~~~-~~~~~~~~~~~I~~~nVsf~Y~~--------------------------- 490 (711)
T TIGR00958 444 MMQAVGASEKVFEYLDRKPNI-----PLT-GTLAPLNLEGLIEFQDVSFSYPN--------------------------- 490 (711)
T ss_pred HHHHHHHHHHHHHHhCCCCCC-----CCC-CCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 556777888888877665431 000 00000112346999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+ +++++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 491 ---~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 563 (711)
T TIGR00958 491 ---R-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQE 563 (711)
T ss_pred ---C-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecC
Confidence 0 1235999999999999999999999999999999999999998 9999999999876653 5789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.||||||.++..- ...+.+.++++. .++ ++.+ -.|+++.||
T Consensus 564 ~~lF-~gTIreNI~~g~~~----~~~e~i~~al~~---a~l------------------------~~~i--~~lp~GldT 609 (711)
T TIGR00958 564 PVLF-SGSVRENIAYGLTD----TPDEEIMAAAKA---ANA------------------------HDFI--MEFPNGYDT 609 (711)
T ss_pred cccc-ccCHHHHHhcCCCC----CCHHHHHHHHHH---cCC------------------------HHHH--HhCCCccCC
Confidence 7655 57999999986421 111222222111 110 1112 236778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..||||||||++||||++++|+|++||||||+||+.++..|.+ ... ..++|+|+ ++|.. ++.+.+|+
T Consensus 610 ~ige~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIi-ItHrl-~~i~~aD~ 682 (711)
T TIGR00958 610 EVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLL-IAHRL-STVERADQ 682 (711)
T ss_pred cccCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEE-EeccH-HHHHhCCE
Confidence 999865 4699999999999999999999999999999999999999888 221 23455555 55554 46678999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++++
T Consensus 683 IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 683 ILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEEECCEEEEeeCHHHHHh
Confidence 99999999999999999865
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=363.36 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=184.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|...+++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378899988873 2469999999999999999999999999999999999876433689999999876
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
... ..++.+||++|++.+++.+||+||+.|....+.....+.+...+.++++++.+++.+..+..+ .+|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 431 124569999999988899999999988754321111123344566889999999987777664 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||+||+.+|+||||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.||++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999878999999999986 47788999999986 688998
Q ss_pred cCCC
Q 001108 1091 GPLG 1094 (1156)
Q Consensus 1091 g~~~ 1094 (1156)
|+..
T Consensus 225 ~~~~ 228 (506)
T PRK13549 225 RPAA 228 (506)
T ss_pred cccc
Confidence 8864
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=364.80 Aligned_cols=209 Identities=28% Similarity=0.379 Sum_probs=177.8
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++|+||+|+|+. .++.+|+|+|++|+|||++||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 46999999999852 12468999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+++ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++.+++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~-----~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA-----P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC-----C-CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 653 457788999999999876 59999998752 1 22 34577888888887643 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|++||+++ ..+.+|++++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 3679999999999999999999999999999999999999999999876 589999999985 4678999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 799999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=335.21 Aligned_cols=217 Identities=24% Similarity=0.283 Sum_probs=179.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCe-EEEEEEEcCcc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~-~~G~i~i~g~~ 933 (1156)
.++++|+++.++. ..+.+|+||||+|++||++||+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788999888741 12358999999999999999999999999999999999865211 13899999987
Q ss_pred CCh---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 934 KKQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
... ...++.+||++|++. .++..||+||+.|....+ ..+.++.++.+.++++.++|.+..+.. +..||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 566789999998764322 233445566788999999998877766 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + +.||++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 8999999999863 4 67999999986 6899
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 98875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.20 Aligned_cols=215 Identities=22% Similarity=0.256 Sum_probs=175.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 930 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 930 (1156)
..+.++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999998874 24699999999999999999999999999999999997542 1368999999
Q ss_pred CccCC-----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccC
Q 001108 931 GYPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 1001 (1156)
Q Consensus 931 g~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~ 1001 (1156)
|.++. ....++.++|++|++.+++ .||+||+.+.+..+. .. ...++.+.++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 1234557999999998887 499999998764432 11 123455677888887742 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++ ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999987 578899999999
Q ss_pred ec----------CcEEEEecCC
Q 001108 1082 KR----------GGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~----------Gg~~~~~g~~ 1093 (1156)
++ +|++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 86 3678888875
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.84 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=177.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC------eEEEEEEE
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 929 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------~~~G~i~i 929 (1156)
++++|++++++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56788887763 346999999999999999999999999999999999986521 12799999
Q ss_pred cCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 930 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 930 ~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
+|.+... ..+++.++|++|++..++.+|++||+.+....... .....++.++.++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987532 23455689999998766679999999875321110 0111123345688999999998776654 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhc
Q 001108 1006 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1075 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~ 1075 (1156)
..||||||||++||++|+ .+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.|
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998765 899999999986 477789
Q ss_pred CeEEEEecCcEEEEecCC
Q 001108 1076 DELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1076 d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++++|++ |++++.|+.
T Consensus 223 d~i~~l~~-G~i~~~g~~ 239 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAP 239 (272)
T ss_pred CEEEEEEC-CeEEEecCH
Confidence 99999986 689988875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=337.16 Aligned_cols=208 Identities=20% Similarity=0.233 Sum_probs=174.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCC--C
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (1156)
..+|+|||++|++|++++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 46999999999999999999999999999999999999987 999999999876543 245799999987 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-ccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1156)
+.+.+||.+++.+..+......+ .+....+.++++.+||+. .+++
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~- 150 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLSA---------------------------------AERREKALAMMAKVGLRPEHYDR- 150 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCCH---------------------------------HHHHHHHHHHHHHCCCChHHhcC-
Confidence 88999999999876543210000 011234677899999963 4454
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
.++.|||||||||+||+||+.+|++||+||||+|||..++.+|++.|+++... .+++|+.++|+...+.+++|+|
T Consensus 151 ----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 151 ----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 44579999999999999999999999999999999999999999999987653 3556677899999999999999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=326.75 Aligned_cols=205 Identities=19% Similarity=0.335 Sum_probs=169.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 4999999999999999999999999999999999999998 9999999988754332 35799999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.+..+....... .+....++.+++.+||++..+.. .
T Consensus 94 tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 135 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSA---------------------------------EQREDRANELMEEFHIEHLRDSM-----G 135 (241)
T ss_pred cHHHHHhhhhhcccccCH---------------------------------HHHHHHHHHHHHHcCCHHHhhcc-----h
Confidence 999999876432110000 00112456778899998655544 4
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+.+.. .+. +|+.++|+..++.+++|++++|++|
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~-tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL-GVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC-EEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 56999999999999999999999999999999999999999999988753 344 4555777888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 214 ~i~~~~~~~~~~ 225 (241)
T PRK10895 214 HLIAHGTPTEIL 225 (241)
T ss_pred eEEeeCCHHHHh
Confidence 999999988764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.55 Aligned_cols=205 Identities=22% Similarity=0.322 Sum_probs=170.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----------------ccceEE
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----------------PQRTAA 229 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----------------~~~~~~ 229 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 4999999999999999999999999999999999999998 999999998875321 246799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 001108 230 YISQHDNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1156)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1156)
|++|++.+++.+||+||+.++... .+.. . .+....++.+++.+|+
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl 136 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMA-R---------------------------------AEAEKRAMELLDMVGL 136 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCC
Confidence 999998889999999999885321 1100 0 0011235667889999
Q ss_pred cccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 001108 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1156)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1156)
++..+.. +..||||||||++||++|+.+|+++||||||+|||+.+...+.+.|+++... .+++|+.++|+..++
T Consensus 137 ~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 137 ADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFA 210 (252)
T ss_pred hhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHH
Confidence 8766644 3569999999999999999999999999999999999999999999987653 345566678888899
Q ss_pred HhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 389 ~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+++|++++|++|++++.|+.+++.
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999988763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=326.11 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=165.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 35699999998889989
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-CCcccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (1156)
||+||+.++..... . + +. ...++.+++.+ ++.+..++.
T Consensus 96 tv~~~l~~~~~~~~---~-~---~~-----------------------------~~~~~~~l~~~~~l~~~~~~~----- 134 (237)
T PRK11614 96 TVEENLAMGGFFAE---R-D---QF-----------------------------QERIKWVYELFPRLHERRIQR----- 134 (237)
T ss_pred cHHHHHHHhhhccC---h-h---HH-----------------------------HHHHHHHHHHHHHHHHHHhCc-----
Confidence 99999988642110 0 0 00 01123345555 355444433
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+.| ||.++|+..++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMT-IFLVEQNANQALKLADRGYVLEN 212 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCE-EEEEeCcHHHHHhhCCEEEEEeC
Confidence 346999999999999999999999999999999999999999999998754 3444 55577888899999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (237)
T PRK11614 213 GHVVLEDTGDALL 225 (237)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999998764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=326.34 Aligned_cols=206 Identities=24% Similarity=0.390 Sum_probs=168.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4899999999999999999999999999999999999863 22379999999987542 1246799999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1156)
+ +||+||+.++....+.... .+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 9999999987543221000 00112356678889997 44444
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
. ++.|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.. + .+|+.++|+..++.+++|+
T Consensus 141 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 S-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 3 456999999999999999999999999999999999999999999998754 3 4556678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|++++.|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=325.60 Aligned_cols=201 Identities=29% Similarity=0.401 Sum_probs=168.4
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh--hcccceEEEec-cCCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 955 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-q~~~~~~~ 955 (1156)
+.+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++ |.+.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34679999999999999999999999999999999999876 568999999976432 23456789997 55677788
Q ss_pred CCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001108 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1156)
Q Consensus 956 ~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPT 1035 (1156)
+|++|++.+...++. ...++..+.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999988654432 223344556788999999987777653 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 47788999999986 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=338.59 Aligned_cols=223 Identities=16% Similarity=0.208 Sum_probs=178.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--CeEEEEEEEcCc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGY 932 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~ 932 (1156)
.+.++|++..|+.. .+...+|+||||+|++||++||+|+||||||||+++|+|.... .+..|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 36789998887532 1235799999999999999999999999999999999998642 246799999998
Q ss_pred cCCh---hc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCC---CChHHHHHHHHHHHHHcCCCccc---c
Q 001108 933 PKKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLR---Q 997 (1156)
Q Consensus 933 ~~~~---~~----~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~---~~~~~~~~~v~~~l~~l~l~~~~---~ 997 (1156)
++.. .. +++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.++|.+.. +
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 7532 11 2346999999986 5688999999976432111000 11123456788999999997532 3
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcC
Q 001108 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 998 ~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d 1076 (1156)
.. +.+|||||||||+||+||+.+|+||||||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|
T Consensus 154 ~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 33 3579999999999999999999999999999999999999999999999864 999999999987 4778899
Q ss_pred eEEEEecCcEEEEecCC
Q 001108 1077 ELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1077 ~v~~l~~Gg~~~~~g~~ 1093 (1156)
++++|.+ |++++.|+.
T Consensus 228 ri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 228 KINVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEEC-CEEEEECCH
Confidence 9999986 799999974
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=336.69 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=172.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCcCc-------cceEEEEcCCC-
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFVP-------QRTAAYISQHD- 235 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d- 235 (1156)
..+|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987421 128999999998765432 13699999987
Q ss_pred -CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
.+.+.+||.+++....+...... ..+....++++|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------------------------------KKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 47899999999876553321000 0011234677899999974211
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
+-+..+..|||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++... .+.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 112455679999999999999999999999999999999999999999999998653 345666688999999999999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+.+++.+
T Consensus 224 i~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999988753
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=321.97 Aligned_cols=215 Identities=26% Similarity=0.337 Sum_probs=180.2
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCceeEEEEcCccCCCcCc-------cceEEEEcCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-P-TLKVSGTVTYNGHDMDEFVP-------QRTAAYISQH 234 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~ 234 (1156)
...+++||||.+++||+++|+|.|||||||+.++|+|+++ + ....+|+|.|+|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4569999999999999999999999999999999999998 4 33568999999998655432 2579999998
Q ss_pred C--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 235 D--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
+ .+.|.+||.+.+.-..+.+.... ..++...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 5 67899999998876654321100 0112234567789999998642
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
.+-+.++.+|||||||||.||.||+.+|++||.|||||+||..++.+|++.|+++.+ ..++.++.|+|+..-+.++|
T Consensus 145 --~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 --RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred --HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 234567889999999999999999999999999999999999999999999999876 56778888999999999999
Q ss_pred CeEEEEcCCeEEEEcChhHHH
Q 001108 393 DDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~ 413 (1156)
|+|+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=322.23 Aligned_cols=196 Identities=24% Similarity=0.356 Sum_probs=160.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 45999999999999999999999999999999999999998 9999999998755332 1569999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++........ .+....+..+++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 889999999988653221100 001123456788999987666544
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+.| |+.++|+..++. .+|+|++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS-FLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHh-hcCEEEE
Confidence 4699999999999999999999999999999999999999999999876533444 555667777764 5899999
Q ss_pred EcCCeEE
Q 001108 398 LSDGQIV 404 (1156)
Q Consensus 398 L~~G~iv 404 (1156)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=321.72 Aligned_cols=194 Identities=27% Similarity=0.395 Sum_probs=162.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 4999999999999999999999999999999999999998 999999999875432 2357999999998999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++....+.. . .+....++++++.+||++..++.+
T Consensus 92 ~~t~~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (214)
T cd03292 92 DRNVYENVAFALEVTGVP-P---------------------------------REIRKRVPAALELVGLSHKHRALP--- 134 (214)
T ss_pred CCcHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCCHHHhhCCh---
Confidence 999999999875432210 0 001123567788899987666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++.+++|++++|+
T Consensus 135 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tiiivtH~~~~~~~~~d~i~~l~ 210 (214)
T cd03292 135 --AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AG-TTVVVATHAKELVDTTRHRVIALE 210 (214)
T ss_pred --hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998754 34 455667788889999999999999
Q ss_pred CCeE
Q 001108 400 DGQI 403 (1156)
Q Consensus 400 ~G~i 403 (1156)
+|++
T Consensus 211 ~G~~ 214 (214)
T cd03292 211 RGKL 214 (214)
T ss_pred CCcC
Confidence 9974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=331.98 Aligned_cols=204 Identities=26% Similarity=0.366 Sum_probs=167.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 4899999999999999999999999999999999999998 999999999875432 2467999999863 67789
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++....+... .+....++++++.+||.+..++.+
T Consensus 100 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (271)
T PRK13632 100 TVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEP----- 140 (271)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCc-----
Confidence 99999988653221100 001124567889999987777655
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++....+.|+|+ ++|+..++. .+|++++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii-~sH~~~~~~-~~d~v~~l~~G 218 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLIS-ITHDMDEAI-LADKVIVFSEG 218 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE-EEechhHHh-hCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999876532345444 566666664 79999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+.+++.
T Consensus 219 ~i~~~g~~~~~~ 230 (271)
T PRK13632 219 KLIAQGKPKEIL 230 (271)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=324.03 Aligned_cols=211 Identities=26% Similarity=0.373 Sum_probs=177.6
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.+. . ++|+|+||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~ 65 (235)
T cd03299 2 KVENLSKDWK-------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITN 65 (235)
T ss_pred eeEeEEEEeC-------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCc
Confidence 4677776653 1 27999999999999999999999999999999999866 568999999987643
Q ss_pred h-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 937 ~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
. ..++.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.++|.+..+..+ ..||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 137 (235)
T cd03299 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQR 137 (235)
T ss_pred CChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHH
Confidence 1 23457999999999998999999998764332 1223344556788999999988777663 5699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
++||+||+.+|++|+|||||+|||+.++..+++.|+++..+ |+|||++||++. ++.+.||++++|++ |++++.|+.
T Consensus 138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998764 999999999986 47788999999986 688888874
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.21 Aligned_cols=205 Identities=24% Similarity=0.357 Sum_probs=169.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCC-
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDN- 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~- 236 (1156)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 35999999999999999999999999999999999999998 99999999987532 12357999999862
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
.+..+||+||+.|+....+... .+....++++++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 3446899999998654321100 00112456788999996 455554
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.++||+|
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999998753 3 555666888999999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=323.96 Aligned_cols=233 Identities=25% Similarity=0.320 Sum_probs=181.9
Q ss_pred EEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 001108 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (1156)
Q Consensus 119 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L 198 (1156)
|+.+|++.++....+ -+++.|...+.+ ..+...+++|+|+|+++++|++++|+|||||||||||++|
T Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i 67 (236)
T cd03267 1 IEVSNLSKSYRVYSK---EPGLIGSLKSLF----------KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIL 67 (236)
T ss_pred CceecchhhccCcCC---ccccchhHHHHH----------hcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 356788888865322 233444444332 1233446799999999999999999999999999999999
Q ss_pred hcCCCCCCCceeEEEEcCccCCCc--CccceEEEEc-CCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCC
Q 001108 199 AGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1156)
Q Consensus 199 ~G~~~~~~~~~G~V~~nG~~~~~~--~~~~~~~yv~-Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1156)
+|.++|+ +|+|.++|.++... ..++.++|++ |++.+++.+||+||+.+.....+...
T Consensus 68 ~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~----------------- 127 (236)
T cd03267 68 SGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP----------------- 127 (236)
T ss_pred hCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH-----------------
Confidence 9999998 99999999875332 2245799997 55667789999999988654322110
Q ss_pred CCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCC
Q 001108 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1156)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD 355 (1156)
++....++.+++.+||++..|+.++ .||||||||++||++|+.+|++++|||||+|||
T Consensus 128 -----------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 128 -----------------ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred -----------------HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 0011234667888999988887664 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEc
Q 001108 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1156)
Q Consensus 356 ~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1156)
+.++..+.+.|+++++.. +.+|+.++|+..++.+++|++++|.+|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRER-GTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999876533 445555778888899999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=320.32 Aligned_cols=191 Identities=25% Similarity=0.385 Sum_probs=162.5
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCCCCCCCCH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
||||+|++ |+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999875 468999999976531 1234579999999998889999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
+||+.+..... .....++.+.++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 1223445678899999998766655 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 46788999999986 6777654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=320.66 Aligned_cols=193 Identities=29% Similarity=0.415 Sum_probs=161.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 4999999999999999999999999999999999999988 999999999876532 2357999999988888
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.++....+... ......++++++.+||++..++.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP--- 135 (214)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999998754322100 001123567888999987666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ .+|+.++|+..++.++||++++|+
T Consensus 136 --~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 136 --EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred --hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEEec
Confidence 46999999999999999999999999999999999999999999998754 34 455567788889999999999999
Q ss_pred CCe
Q 001108 400 DGQ 402 (1156)
Q Consensus 400 ~G~ 402 (1156)
+|+
T Consensus 212 ~G~ 214 (214)
T TIGR02673 212 DGR 214 (214)
T ss_pred CCC
Confidence 985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=325.12 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=176.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. + ..||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 568889888741 1 238999999999999999999999999999999876 56899999998754
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ...+.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 12456999999999999999999998753211 111 1234566889999999988777764 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999987 47788999999986 688898874
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=330.85 Aligned_cols=224 Identities=21% Similarity=0.253 Sum_probs=179.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++.+.. +...+.+.+|+|+||+|++||++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3788999988742110 000012469999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 001108 935 KQ---ETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~L 1008 (1156)
.. ...++.++|++|++. +++.+|+.+++.+...... ........+.++++++.++|. ...+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 42 123356999999975 5677899999988654431 223334455688999999994 455544 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||++||+||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999987 57778999999985 688
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 888764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=331.96 Aligned_cols=206 Identities=26% Similarity=0.353 Sum_probs=169.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCCC-CCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIG 239 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1156)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999998 999999999875421 2467999999863 344
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
..||.||+.|+....+... .+....++++++.+||+...++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754322100 001224677899999988777665
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++....+.| |+.++|+..++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-illvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGIT-IILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecChHHHhc-CCEEEEEE
Confidence 4699999999999999999999999999999999999999999999876533444 5556777777765 99999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 219 SGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999988753
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=326.72 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=164.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 48999999999999999999999999999999999998620 1289999999886421 1246799999987777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1156)
.+||+||+.|+....+.... .+....++..++.+|+. +..++
T Consensus 101 -~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 49999999987543211000 00112345566777763 33444
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
. ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++. .+ ++||.++|+..++.+++|+
T Consensus 147 ~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 N-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ES-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCE
Confidence 3 45799999999999999999999999999999999999999999999874 24 4555678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=292.24 Aligned_cols=197 Identities=26% Similarity=0.381 Sum_probs=170.6
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDI 951 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~ 951 (1156)
+...+|++|++.|++||.+||+|||||||||||-+|+|+.. +.+|+|.+.|.+... ..+.+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 56789999999999999999999999999999999999887 568999999998643 123468999999999
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
+.|++|..||+.....++.... .+......+.++.+||.+-.+.+. .+|||||+|||+||||++..|+|||-
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999999998876322 223445678899999987666553 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||.+||..+...|.+++-.+.+ .|.|.|++||||. ....|||.+-|.. |+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 999999999999999999988764 5999999999986 5788999999986 5654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=330.76 Aligned_cols=205 Identities=25% Similarity=0.362 Sum_probs=170.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|||+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 3899999999999999999999999999999999999998 999999999875432 2356999999863 35568
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++....+... .+....++.+++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999988654321100 011124567889999987777655
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++... .+++|+.++|+..++.+.||+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999987653 2455566788888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=327.11 Aligned_cols=205 Identities=33% Similarity=0.511 Sum_probs=170.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 4999999999999999999999999999999999999988 9999999988754322 356999999988878899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.++....+. .. + +....++.+++.+||.+..++.+ .
T Consensus 93 v~e~l~~~~~~~~~-~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 133 (258)
T PRK13548 93 VEEVVAMGRAPHGL-SR-A--------------------------------EDDALVAAALAQVDLAHLAGRDY-----P 133 (258)
T ss_pred HHHHHHhhhcccCC-Cc-H--------------------------------HHHHHHHHHHHHcCCHhHhcCCc-----c
Confidence 99999886422110 00 0 01123566788999987666655 4
Q ss_pred CCChhHHHHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 323 GISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~------~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+..+ .+||.++|+..++.+++|+|+
T Consensus 134 ~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~ 212 (258)
T PRK13548 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLAARYADRIV 212 (258)
T ss_pred cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhcCEEE
Confidence 69999999999999999 59999999999999999999999999998763334 455567788889999999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001108 397 LLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++++.|+++++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 213 LLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999999987764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=342.56 Aligned_cols=194 Identities=23% Similarity=0.376 Sum_probs=168.4
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCCCCCCCCH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 9999999999999999999999999999999876 468999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
+||+.|+.... ...+.++.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12234456889999999988777763 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999998765 899999999987 57788999999986 688888874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=326.76 Aligned_cols=220 Identities=22% Similarity=0.295 Sum_probs=172.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.+
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765332 23589999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++....... +...... +. +... ....+....++.+++.+||.+..+..+
T Consensus 96 tv~enl~~~~~~~~~~---~~~~~~~------~~-~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 96 TVIENLLVAQHQQLKT---GLFSGLL------KT-PAFR---------RAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred cHHHHHHHhhhccccc---hhhhhhc------cc-cccc---------cchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 9999999864311000 0000000 00 0000 000011234567888999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ ..+++||.++|+..++.++||++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998765 32455666788889999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 231 ~i~~~~~~~~~~ 242 (255)
T PRK11300 231 TPLANGTPEEIR 242 (255)
T ss_pred eEEecCCHHHHh
Confidence 999999988763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=326.06 Aligned_cols=215 Identities=26% Similarity=0.300 Sum_probs=174.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899998874 2469999999999999999999999999999999999632 1 12479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.+.++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87532 234567999999988877 899999988654321 1122233456788899988753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++||+||+.+|++|||||||+|||+.++..++++|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=325.67 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=176.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467899988773 246899999999999999999999999999999999975421 2579999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.+||++|++.+++ .|++||+.|....... ......++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 233567999999998887 8999999987543311 122344556788999998753 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||+|||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999876 689999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 6 688888874
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=323.90 Aligned_cols=210 Identities=23% Similarity=0.346 Sum_probs=170.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988754332 24699999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.++..... ..+...... ...+....++++++.+|+++..++.+
T Consensus 93 tv~~nl~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (242)
T TIGR03411 93 TVFENLELALPRDK--SVFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADRLA----- 141 (242)
T ss_pred CHHHHHHHhhhccc--ccccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999988643110 000000000 00011234677889999987666554
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.. + .+||.++|+..++.++||+|++|++|
T Consensus 142 ~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998753 3 45556788888999999999999999
Q ss_pred eEEEEcChhHH
Q 001108 402 QIVYQGPRELV 412 (1156)
Q Consensus 402 ~iv~~G~~~~~ 412 (1156)
++++.|+.+++
T Consensus 219 ~~~~~~~~~~~ 229 (242)
T TIGR03411 219 SVLAEGSLDQV 229 (242)
T ss_pred eEEeeCCHHHH
Confidence 99999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=341.58 Aligned_cols=190 Identities=23% Similarity=0.379 Sum_probs=166.6
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCCCCCCCCH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 568999999977532 1235679999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
+||+.|+.. ...++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112356789999999988777763 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999998765 899999999986 57889999999986 688888874
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=328.85 Aligned_cols=215 Identities=23% Similarity=0.319 Sum_probs=172.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999998 999999999875432 2457999999864 67888
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
|+++|+.|.....+... .+....++.+++.+||.+..++.+
T Consensus 100 ~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 99999988754321100 001123566788999987666544
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||+|++.+|+++||||||+|||+.++..+.+.|+++....+.|+ +.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti-iivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI-ISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEecCchHHhc-CCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754334454 446666677765 9999999999
Q ss_pred eEEEEcChhHHHH---HHHhcCCCCC
Q 001108 402 QIVYQGPRELVLE---FFASMGFRCP 424 (1156)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p 424 (1156)
++++.|+++++.+ .+...|+++|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999987643 3334444443
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=325.31 Aligned_cols=215 Identities=21% Similarity=0.290 Sum_probs=175.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..... +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 477899988874 235899999999999999999999999999999999964321 2579999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 234567999999988877 8999999987543311 122334566788888888753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4899999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 688888763
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=326.72 Aligned_cols=219 Identities=19% Similarity=0.247 Sum_probs=175.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478999998774 24699999999999999999999999999999999997541 1 1479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.+||++|++.+++. ||+||+.|....+. ....++..+.++++++.+++.+........ .+.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHT-QAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhC-Ccc
Confidence 87531 2345679999999888875 99999988654321 112233445678889999885421111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
+||||||||++||++|+.+|+||||||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999864 799999999987 47789999999986 78
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 8888874
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=330.50 Aligned_cols=203 Identities=27% Similarity=0.395 Sum_probs=168.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC----ccceEEEEcCCCC-CCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~~ 240 (1156)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 3999999999999999999999999999999999999998 999999999875432 2357999999864 4677
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
.||+||+.|+....+... .+....++++++.+||.+..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~---- 134 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPP----------------------------------IEIRKRVDRALAEIGLEKYRHRSP---- 134 (274)
T ss_pred chHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCc----
Confidence 899999998754321100 001124567788999987777655
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++ ..+|+|++|++
T Consensus 135 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 -KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998754 3 44555567777777 56999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=330.31 Aligned_cols=204 Identities=23% Similarity=0.349 Sum_probs=166.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEcCCCC-C
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDN-H 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~~~~~~yv~Q~d~-~ 237 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 4999999999999999999999999999999999999998 999999999875421 2356999999852 3
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (1156)
+...||+||+.|.....+... .+....++.+++.+||.. ..+..
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (280)
T PRK13649 98 LFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN- 142 (280)
T ss_pred hccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC-
Confidence 345799999988653321100 001123566788899963 44444
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
++.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++||.++|+..++.+++|+++
T Consensus 143 ----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 143 ----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEEE
Confidence 456999999999999999999999999999999999999999999998754 3 4455557788888999999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001108 397 LLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 217 VLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=326.14 Aligned_cols=205 Identities=20% Similarity=0.307 Sum_probs=165.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 48999999999999999999999999999999999987510 1289999999886432 1245799999988777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1156)
+ +||+||+.|+.+..+... + +....++.+++.+|+. +..++
T Consensus 106 ~-~tv~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 106 P-MSIYDNVAYGPRIHGANK--K--------------------------------DLDGVVENALRSAALWDETSDRLKS 150 (258)
T ss_pred c-ccHHHHHHHHHHHcCCCH--H--------------------------------HHHHHHHHHHHHcCCCcchhhhhcC
Confidence 7 899999998754322100 0 0012345677888874 22333
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+++|+
T Consensus 151 -----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~-~tiiivsH~~~~~~~~~d~ 222 (258)
T PRK14268 151 -----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK--KD-YTIVIVTHNMQQAARISDY 222 (258)
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--hC-CEEEEEECCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 24 5556678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|++++.|+++++.
T Consensus 223 i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 223 TGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988763
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=326.51 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=168.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc----------------CccceEE
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------------VPQRTAA 229 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~----------------~~~~~~~ 229 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 4999999999999999999999999999999999999988 99999999876421 1135799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 001108 230 YISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1156)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1156)
||+|++.+++.+||+||+.++.. ..+.. . .+....+.++++.+||
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl 141 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------------------------------QEARERAVKYLAKVGI 141 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCC-H---------------------------------HHHHHHHHHHHHHcCC
Confidence 99999988999999999987542 11100 0 0011235677889999
Q ss_pred cccc-cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 309 DVCA-DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 309 ~~~~-dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
.+.. +. ....|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. . +.+|+.++|+..+
T Consensus 142 ~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~~ 214 (257)
T PRK10619 142 DERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMGF 214 (257)
T ss_pred ChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHH
Confidence 7643 43 3457999999999999999999999999999999999999999999998754 3 4555667888889
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
+..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 215 ARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999999988764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=325.51 Aligned_cols=218 Identities=18% Similarity=0.243 Sum_probs=173.7
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEcCcc
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISGYP 933 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g~~ 933 (1156)
+++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... . +..|+|.++|.+
T Consensus 7 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 7 SVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred EeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 5678877763 24699999999999999999999999999999999997541 1 358999999987
Q ss_pred CCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 934 KKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 934 ~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
+.. ...++.++|++|++.+++. |++||+.+....+. .....+..++.++++++.+++.+........ .+..|
T Consensus 74 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~L 150 (251)
T PRK14244 74 VYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFEL 150 (251)
T ss_pred hHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhC
Confidence 532 1245679999999888775 99999988643331 1112233445678899999986521111111 13579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~ 227 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIV 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999985 4899999999987 47788999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 228 ~~~~~ 232 (251)
T PRK14244 228 EYNTT 232 (251)
T ss_pred EeCCH
Confidence 88764
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=359.03 Aligned_cols=122 Identities=24% Similarity=0.302 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 001108 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 1031 (1156)
Q Consensus 956 ~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p---~illL 1031 (1156)
+||.|++.|...+.. .....+.++.++|... .+.. +..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 789999988654321 1123578999999753 3443 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
||||+|||+.....+++.|+++.++|.|||+++|+++ ..+.+|+++.|. +||++++.|+.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999999999888999999999985 346899999995 57899999974
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=323.72 Aligned_cols=200 Identities=25% Similarity=0.398 Sum_probs=165.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 4899999999999999999999999999999999999998 999999998875432 2467999999877775 69
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccccccccc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (1156)
|+||+.++....+ . ....++.+++.+||+ +..++ .+
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR-----DV 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 9999987532210 0 001245678889996 34443 34
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||+|++.+|+++||||||+|||+.++..+.+.|+++....+ ++|+.++|+..++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN-LTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 57999999999999999999999999999999999999999999998764334 45556788888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
+++..|++.++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=312.89 Aligned_cols=190 Identities=49% Similarity=0.849 Sum_probs=162.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC--CCCeEEEEEEEcCc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 932 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~ 932 (1156)
.++++|+++.++.... ...+.+|+|+||+|++|++++|+||||||||||+++|+|.. . +..|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 4788999988852100 01246999999999999999999999999999999999986 5 56899999998
Q ss_pred cCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 933 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 933 ~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8765445677999999998888999999997643110 399999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986457788999999986 6777654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=324.72 Aligned_cols=219 Identities=23% Similarity=0.313 Sum_probs=175.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 367899988773 246899999999999999999999999999999999975421 2589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+..... .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNK-PGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhC-Chh
Confidence 87532 123567999999998887 899999988654321 112233445678889998886421111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
+||||||||++||+||+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 47788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14262 223 LIEYGPT 229 (250)
T ss_pred EEEecCH
Confidence 8888864
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=335.13 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=168.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++.++
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998631 01289999999998532 2356799999988766
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
..||+|||.|+....+... .+ .....+...++.++|.+..++.++.
T Consensus 176 -~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~~ 221 (329)
T PRK14257 176 -EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLDK 221 (329)
T ss_pred -CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhhC
Confidence 5899999998753321100 00 0111244566777776555566654
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
....|||||||||+||||++.+|+||+|||||+|||+.+...+.++|+++.. + .+|+.++|....+.+.+|+|++|
T Consensus 222 -~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 222 -AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred -CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 4557999999999999999999999999999999999999999999998643 3 45666788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 298 ~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 298 YQGWIEEAGETKTIF 312 (329)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999874
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=334.43 Aligned_cols=222 Identities=18% Similarity=0.215 Sum_probs=179.2
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 930 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 930 (1156)
..++++|+++.++. +...+|+||||+|++||++||+||||||||||+++|+|.... .+..|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46899999988852 124689999999999999999999999999999999997531 2458999999
Q ss_pred CccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
|.++.. ...++.++||||++.+++ .|++||+.|+..... ....+..++.+.++++.++|.+-.+..++.. +
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 998742 234567999999998875 799999998643221 1112223445678889988754322333333 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|+++.+ ++|||++||++. .+.+.||++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999875 799999999986 46778999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
+++..|+.
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999885
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=319.66 Aligned_cols=195 Identities=24% Similarity=0.335 Sum_probs=163.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 4999999999999999999999999999999999999988 999999999875432 2357999999988889
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.+.....+... ++....++.+++.+||.+..++.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP--- 135 (222)
T ss_pred cccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc---
Confidence 9999999988754322100 001123456788899987666544
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++...+|+|++|+
T Consensus 136 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 136 --IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3 4556668888899999999999999
Q ss_pred CCeEE
Q 001108 400 DGQIV 404 (1156)
Q Consensus 400 ~G~iv 404 (1156)
+|+++
T Consensus 212 ~G~i~ 216 (222)
T PRK10908 212 DGHLH 216 (222)
T ss_pred CCEEc
Confidence 99985
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=330.56 Aligned_cols=216 Identities=24% Similarity=0.303 Sum_probs=180.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++.. ....+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47899999887421 12358999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999974 566789999998765432 123344456788999999998877765 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999864 4 46999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8874
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=326.20 Aligned_cols=216 Identities=21% Similarity=0.286 Sum_probs=177.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC-e--EEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~--~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..... + ..|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899998874 246899999999999999999999999999999999975422 2 479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+....+. .......++.+.++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234457999999998887 899999988654332 1122334456788899988843 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999997 5888999999998
Q ss_pred c----CcEEEEecCC
Q 001108 1083 R----GGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~----Gg~~~~~g~~ 1093 (1156)
. .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 4 4899999875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=327.23 Aligned_cols=206 Identities=26% Similarity=0.337 Sum_probs=169.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCC--C
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (1156)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999998 999999999876432 235699999986 4
Q ss_pred CCCCCCHHHHHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccc
Q 001108 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1156)
+++.+||+||+.+..... +.. ..+....++.+++.+||. ...+.
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLD----------------------------------ESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhC
Confidence 667899999998754211 000 000112356788899995 45554
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
. ++.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.... +++||.++|+...+.+++|+
T Consensus 147 ~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 L-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhcE
Confidence 4 34699999999999999999999999999999999999999999999876532 44566678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=294.65 Aligned_cols=206 Identities=26% Similarity=0.393 Sum_probs=177.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+|+|||+.|.+|+.++++||||||||||||+++|+.+|. .|+|.+||.+++.- ...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45899999999999999999999999999999999999998 99999999987653 34568999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
+|++|+.++.|.++. .+ ..++...+...||.+..+.. +-.|
T Consensus 93 dNvafgL~l~Gi~k~-------~R---------------------------~~~a~q~l~~VgL~~~~~~~-----i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QR---------------------------REIAHQMLALVGLEGAEHKY-----IWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HH---------------------------HHHHHHHHHHhCcccccccc-----eEee
Confidence 999999999886432 11 23466788899999776544 4579
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc--CCe
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~--~G~ 402 (1156)
||||||||.|||||..+|++|+||||+.+||.-++.++.+.|-++.+..++ -++.++|+..|+.-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk-~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK-QVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC-eEEEEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999888875554 45558999999999999999998 589
Q ss_pred EEEEcChhHHHHH
Q 001108 403 IVYQGPRELVLEF 415 (1156)
Q Consensus 403 iv~~G~~~~~~~~ 415 (1156)
|+..=+++--..|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9988777644433
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=319.22 Aligned_cols=209 Identities=23% Similarity=0.341 Sum_probs=174.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.+... .+.+.+|+|+||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5788888876310 012579999999999999999999999999999999999865 56899999998753
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ...++.++|++|++.+++.+|+.||+.+...... ....++..+.+.++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 2 1245679999999999888999999998754321 123344556788999999998777665 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
+|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||+++|+++ +.+.||++++|++|
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g 217 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999876 5899999999985 45889999999864
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=325.46 Aligned_cols=221 Identities=20% Similarity=0.261 Sum_probs=178.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ +..+|+|+||++++|+++||+|+||||||||+++|+|...+. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999998874 235899999999999999999999999999999999986531 1369999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+....... ....+..+.+.++++.+++.+..+...+.+ +.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHKS-AL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCC-cc
Confidence 77521 234567999999988887 8999999876433211 122333456788999998854222122211 45
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 1084 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G- 1084 (1156)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++. +|+|||++||+++ ++.+.||++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999864 4899999999987 578899999999874
Q ss_pred ---cEEEEecCC
Q 001108 1085 ---GQEIYVGPL 1093 (1156)
Q Consensus 1085 ---g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 799999875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=323.62 Aligned_cols=203 Identities=26% Similarity=0.341 Sum_probs=167.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC------c---CccceEEEEcCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------F---VPQRTAAYISQHDN 236 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~------~---~~~~~~~yv~Q~d~ 236 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 4999999999999999999999999999999999999988 9999999987631 1 12357999999998
Q ss_pred CCCCCCHHHHHHHH-hhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 237 HIGEMTVRETLAFS-ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
+++.+||+||+.+. ....+... .+....++.+++.+||+...+..
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 99999999999753 22111100 00112356778899998766655
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+ +.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. .+ ++++.++|+..++.+++|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TG-ITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999998753 34 45566788888999999999
Q ss_pred EEEcCCeEEEEcChhHH
Q 001108 396 ILLSDGQIVYQGPRELV 412 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1156)
++|.+|++++.|+++++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=325.25 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=174.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--CeEEEEEEEcC
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISG 931 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g 931 (1156)
..++++|+++.++ +.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+..|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3588999998762 2489999999999999999999999999999999998653 11689999999
Q ss_pred ccCChhcc-cceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc---ccccccCCCCC
Q 001108 932 YPKKQETF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP---LRQSLVGLPGV 1005 (1156)
Q Consensus 932 ~~~~~~~~-~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~~~~~~~ 1005 (1156)
.++..... ++.++|++|++. +.+..|+.+++.+.+..... .. ..+.++++++.+++.+ ..+.. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87643222 356999999974 44668999998765432211 11 2356788999999976 23443 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..||||||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999986 47788999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 688988874
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=319.40 Aligned_cols=205 Identities=28% Similarity=0.343 Sum_probs=171.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|++..++.+||+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 4999999999999999999999999999999999999998 999999999876533 246799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.++....+... . .....++.+++.+||++..++.+ ..|
T Consensus 91 ~nl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (232)
T cd03300 91 ENIAFGLRLKKLPK--A--------------------------------EIKERVAEALDLVQLEGYANRKP-----SQL 131 (232)
T ss_pred HHHHHHHHhcCCCH--H--------------------------------HHHHHHHHHHHHcCCchhhcCCh-----hhC
Confidence 99988754322100 0 01123567888999987776554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++....+.| |+.++|+..++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~t-iii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGIT-FVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533445 445677778899999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (232)
T cd03300 211 QIGTPEEIY 219 (232)
T ss_pred ecCCHHHHH
Confidence 999887663
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=326.64 Aligned_cols=204 Identities=28% Similarity=0.397 Sum_probs=169.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc--C---ccceEEEEcCCCC-CCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V---PQRTAAYISQHDN-HIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (1156)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... . .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 4899999999999999999999999999999999999998 99999999987421 1 2467999999853 345
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.|+....+. .+ .+....+..+++.+||.+..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL-SK---------------------------------EEVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCC-CH---------------------------------HHHHHHHHHHHHHCCCchhhcCChh--
Confidence 67999999876422111 00 0011235678899999877776554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.++||+|++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999998764 3 4556667888889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=327.24 Aligned_cols=204 Identities=27% Similarity=0.373 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC--c---CccceEEEEcCCCC-CCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++||+|++. .++
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 3899999999999999999999999999999999999998 9999999998742 1 12357999999864 345
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
..|+.||+.+.....+... .+....++.+++.+||.+..++.+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPI--- 134 (271)
T ss_pred cccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc---
Confidence 6789999988643321100 001123566788899987766554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++.+++|++++|+
T Consensus 135 --~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 135 --QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998764 34 456667888899999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=319.61 Aligned_cols=197 Identities=27% Similarity=0.332 Sum_probs=162.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5999999999999999999999999999999999999998 9999999998765432 24699999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.+.....+.. . .+....++.+++.+||.+..+..+
T Consensus 101 ~~~tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 144 (228)
T PRK10584 101 PTLNALENVELPALLRGES-S---------------------------------RQSRNGAKALLEQLGLGKRLDHLP-- 144 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCCHhHhhCCh--
Confidence 9999999998865332110 0 001124567888999987666554
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..||||||||++||++|+.+|++|||||||+|||+.+...+.+.|++++...+.| |+.++|+..++ +.+|++++|
T Consensus 145 ---~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT-LILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999876533444 45566776776 559999999
Q ss_pred cCCeEEEE
Q 001108 399 SDGQIVYQ 406 (1156)
Q Consensus 399 ~~G~iv~~ 406 (1156)
++|+++++
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=316.80 Aligned_cols=202 Identities=19% Similarity=0.282 Sum_probs=154.4
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.|..+-.+||+|.|+ +.++++++++|-|.--..+||+||||.||||||++|.|... +..|+..-+.
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKnh 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKNH 648 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhccc
Confidence 344677889998885 45679999999999999999999999999999999999776 4456554221
Q ss_pred ccCChhcccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 932 YPKKQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 932 ~~~~~~~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
+-.+|+.-|... +...-|.-|.|.-.. + .+. +.....|-.+||...+++.- +..||
T Consensus 649 --------rL~iG~FdQh~~E~L~~Eetp~EyLqr~F----N--lpy----q~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 649 --------RLRIGWFDQHANEALNGEETPVEYLQRKF----N--LPY----QEARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred --------eeeeechhhhhHHhhccccCHHHHHHHhc----C--CCh----HHHHHHhhhhhhhhccceEe----eeecC
Confidence 224788777543 334557667664221 1 122 22456778888888777653 56799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||-||++|-.-++.|+||||||||++||.++...+-+.|+++ ...||+++||-.+ |.+--+.++++.+.|.--.
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999877 4589999999775 6676788899887664444
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|.+
T Consensus 783 dGdF 786 (807)
T KOG0066|consen 783 DGDF 786 (807)
T ss_pred cccH
Confidence 4544
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=329.40 Aligned_cols=208 Identities=26% Similarity=0.342 Sum_probs=168.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++||+|++. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 4899999999999999999999999999999999999987212399999999876432 2357999999864 67789
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|..+..+.. .++....++.+++.+||....++.+
T Consensus 101 tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSEP----- 141 (282)
T ss_pred CHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 9999998865332110 0011224567889999987666544
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++....+.| |+.++|+..++ ..||++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-vli~tH~~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999999876533444 55566777777 579999999999
Q ss_pred eEEEEcChhHHHH
Q 001108 402 QIVYQGPRELVLE 414 (1156)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1156)
++++.|+++++..
T Consensus 220 ~i~~~g~~~~~~~ 232 (282)
T PRK13640 220 KLLAQGSPVEIFS 232 (282)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988753
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=367.98 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=108.2
Q ss_pred CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHh---cCCC
Q 001108 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1027 (1156)
Q Consensus 952 ~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL~---~~p~ 1027 (1156)
.+...||.|+|.++..-......+.++..+.+ ++++.++|..+ .+.. +..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45568999999887653221112223444555 58888999775 4554 3579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
+|+|||||+|||+.+...+++.|+++.++|.|||+++|+++. + +.+|++++|. .||+++..|+.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 999999999999999999999999998889999999999863 4 8999999996 36899999975
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=319.10 Aligned_cols=202 Identities=25% Similarity=0.310 Sum_probs=182.3
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEeccCCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHS 953 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~ 953 (1156)
..-++|+||+|+.||++.|||-||||||||+++|.++.. +..|+|.++|.++.. ..+++.++.|+|+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 456899999999999999999999999999999999887 578999999987542 12345799999999999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001108 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1156)
Q Consensus 954 ~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDE 1033 (1156)
|+.||.||..|+..++ .++++++++++.++++.+||.++.++++ .+|||||||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 4567889999999999999999999884 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1034 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
|+|+|||--+..+++-|.++.++ .+|||++|||.+ |.+..-||+.+|+ +|+++..|++.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 99999999999999999888654 899999999998 6889999999997 58999999863
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=326.66 Aligned_cols=217 Identities=22% Similarity=0.253 Sum_probs=177.6
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEE
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITI 929 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i 929 (1156)
...++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.+
T Consensus 23 ~~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 23 QTALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred CcEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 34689999998874 24689999999999999999999999999999999998542 136899999
Q ss_pred cCccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----cccccc
Q 001108 930 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLV 1000 (1156)
Q Consensus 930 ~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~ 1000 (1156)
+|.++.. ..+++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 165 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN- 165 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC-
Confidence 9987642 2345679999999988875 99999988654321 1112233456788899988864 22322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
+..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ +.|||++||+++ ++.+.||++++
T Consensus 166 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 239 (272)
T PRK14236 166 ----AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAF 239 (272)
T ss_pred ----cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEE
Confidence 357999999999999999999999999999999999999999999999975 799999999986 47788999999
Q ss_pred EecCcEEEEecCC
Q 001108 1081 MKRGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~~Gg~~~~~g~~ 1093 (1156)
|++ |++++.|+.
T Consensus 240 l~~-G~i~~~g~~ 251 (272)
T PRK14236 240 MYM-GKLVEYGDT 251 (272)
T ss_pred EEC-CEEEecCCH
Confidence 986 688888874
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=325.54 Aligned_cols=215 Identities=24% Similarity=0.261 Sum_probs=175.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc-
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 933 (1156)
.++++|+++.++ ++.+|+|+||+|++|+++||+|+||||||||+++|+|... +..|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478999998874 2368999999999999999999999999999999999876 468999999986
Q ss_pred ----CCh---hc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccc
Q 001108 934 ----KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 999 (1156)
Q Consensus 934 ----~~~---~~----~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 999 (1156)
+.. .. .++.+||++|++. +.+.+|+.||+.+...... .....+.+..+.++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 432 11 2346999999974 5677899999976432211 1122234556788999999963 44544
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeE
Q 001108 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1000 ~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++||+++ .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 466789999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 689998874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=360.50 Aligned_cols=212 Identities=25% Similarity=0.365 Sum_probs=177.2
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++||+|+|+. ++.+|+|+|++|++|+.+||+|+||||||||+++|+|... +.+|+|.+||.
T Consensus 471 ~~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~ 536 (708)
T TIGR01193 471 NGDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGF 536 (708)
T ss_pred CCcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCE
Confidence 346999999999851 2358999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~ 1002 (1156)
++.+ ..+++.+|||+|++.+++ .|++|||.++.. ++.+ ++.++++++..++.+.. |+.+|.
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecC
Confidence 8643 456778999999998876 499999987521 1222 23467777777775433 445555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. ..+||||||||++|||||+++|+||+||||||+||+++++.+++.|+++ +|+|+|+++|+++ ..+.+|++++|+
T Consensus 608 ~-G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~ 682 (708)
T TIGR01193 608 E-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD 682 (708)
T ss_pred C-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE
Confidence 3 4679999999999999999999999999999999999999999999985 4899999999986 467899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 683 ~-G~i~~~G~~ 692 (708)
T TIGR01193 683 H-GKIIEQGSH 692 (708)
T ss_pred C-CEEEEECCH
Confidence 6 789998873
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=323.63 Aligned_cols=219 Identities=22% Similarity=0.245 Sum_probs=175.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888888774 246999999999999999999999999999999999976521 3589999999
Q ss_pred ccCC----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 932 YPKK----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 932 ~~~~----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
.++. ....++.++|++|++.+++ .||.||+.+...... ....+...+.+.++++.+++.+........ .+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 7753 1234567999999998887 899999987643321 111233345677888888875321111111 1357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 699999999987 57888999999986 688
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 888874
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=340.59 Aligned_cols=211 Identities=27% Similarity=0.423 Sum_probs=176.5
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.+..++|+||.++|. +++++|+||||+|++||.+||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345799999999985 23469999999999999999999999999999999998654 489999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVG 1001 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~ 1001 (1156)
.+++. ...|+.+|||||+..++. -||.+|+.|+. +..+. ++|-++.+..++.+.- .+.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASD----EEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCH----HHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 98654 567889999999888765 69999999863 33333 3456666776765533 34466
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
+.| ..|||||||||+||||++++|+|+++|||||.||.++.+.+++.+++. ..|+|+|++.|+.+ ..+.||+|++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEE
Confidence 654 569999999999999999999999999999999999999999999984 35899999999964 67899999999
Q ss_pred ecCcEEEEecC
Q 001108 1082 KRGGQEIYVGP 1092 (1156)
Q Consensus 1082 ~~Gg~~~~~g~ 1092 (1156)
++ |++...|+
T Consensus 559 ~n-G~v~e~gt 568 (591)
T KOG0057|consen 559 DN-GTVKEYGT 568 (591)
T ss_pred EC-CeeEEecc
Confidence 97 56777776
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=322.84 Aligned_cols=212 Identities=24% Similarity=0.288 Sum_probs=168.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 4899999999999999999999999999999999998741 012899999999875432 24679999999888899
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+||+||+.++.+..+..... .+....++.+++.+||.+..... -+..
T Consensus 97 ~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~~~ 143 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSK--------------------------------KELQERVRWALEKAQLWDEVKDR-LDAP 143 (250)
T ss_pred CcHHHHHHHHHHhccccCCH--------------------------------HHHHHHHHHHHHHcCCCcchhhh-hcCC
Confidence 99999999875432110000 00112356678888886421111 1233
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+.+|+|++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KD-MTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999874 24 4566678888889999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14247 221 GQIVEWGPTREVF 233 (250)
T ss_pred CeEEEECCHHHHH
Confidence 9999999988764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=317.31 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=172.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+++||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899988763 2359999999999999999999999999999999999876 4689999999876
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.....++.++|++|++.+++.+|++||+.+....+. . ..++.++++++.++|.+..+..+ ..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999988888999999988654321 1 12345678899999987776653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 5888999999886
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=318.07 Aligned_cols=196 Identities=26% Similarity=0.341 Sum_probs=166.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++.+||+|
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 4999999999999999999999999999999999999998 999999998765322 357999999988899999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.+.....+.. ...+..+++.+||++..|..+ ..||
T Consensus 90 ~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS 126 (223)
T TIGR03740 90 NLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKA-----KQFS 126 (223)
T ss_pred HHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhH-----hhCC
Confidence 998765332100 012456778899987666544 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.. .+.+ |+.++|+..++.+.+|+|++|++|++++
T Consensus 127 ~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGIT-VILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCE-EEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999998754 3444 5557777888999999999999999999
Q ss_pred EcChh
Q 001108 406 QGPRE 410 (1156)
Q Consensus 406 ~G~~~ 410 (1156)
.|++.
T Consensus 205 ~~~~~ 209 (223)
T TIGR03740 205 QGKIN 209 (223)
T ss_pred ecChh
Confidence 99865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=357.55 Aligned_cols=218 Identities=26% Similarity=0.328 Sum_probs=183.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378899988873 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
... ..++.+||++|++.+++.+||+||+.|+...+.. ...+.++.++.+.++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCC
Confidence 321 1245699999999889999999999886432210 11223334566889999999988777664 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.||++++|++ |+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 47789999999986 68888
Q ss_pred ecCCC
Q 001108 1090 VGPLG 1094 (1156)
Q Consensus 1090 ~g~~~ 1094 (1156)
.|+..
T Consensus 222 ~~~~~ 226 (501)
T PRK10762 222 EREVA 226 (501)
T ss_pred ecCcC
Confidence 88764
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=358.32 Aligned_cols=210 Identities=26% Similarity=0.388 Sum_probs=176.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++||+|+|+. .++.+|+|+|++|++||.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46999999999862 12468999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+++ ..+++.+|||+|++.+++ .|++|||.++. ++.+ ++.++++++..++.+.. ++.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 653 456788999999998875 69999998641 2222 34467788888876543 3445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|++ .++|+|++||+++ ....||++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 367999999999999999999999999999999999999999999986 4899999999986 4677999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 799999874
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=322.07 Aligned_cols=212 Identities=26% Similarity=0.331 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... +..++|++|++.+++
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 4999999999999999999999999999999999995 576 9999999998755332 234899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 318 (1156)
.+|++|++.+.......... .... ...+....++.+++.+||+. ..++.++
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~------------------~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 142 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARG------------------EEPL---------DLLDFLKLLKAKLALLGMDEEFLNRSVN- 142 (243)
T ss_pred CcCHHHHHHHHHHHhhcccc------------------cccc---------cHHHHHHHHHHHHHHcCCchhhcccccc-
Confidence 99999999886532110000 0000 00011234677889999973 4554432
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh-cCeEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~-~D~iil 397 (1156)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++||.++|+..++... +|++++
T Consensus 143 ---~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i~~ 217 (243)
T TIGR01978 143 ---EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYVHV 217 (243)
T ss_pred ---cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeEEE
Confidence 14999999999999999999999999999999999999999999998753 34 4555577888888888 899999
Q ss_pred EcCCeEEEEcChhHHH
Q 001108 398 LSDGQIVYQGPRELVL 413 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1156)
|++|++++.|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 218 LLDGRIVKSGDVELAK 233 (243)
T ss_pred EeCCEEEEecCHHHhc
Confidence 9999999999987653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=321.79 Aligned_cols=201 Identities=24% Similarity=0.316 Sum_probs=166.3
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC--eEEEEEEEcCccCChhcc-cceEEEeccCCC--CCCCCC
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 957 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~q~~~--~~~~~T 957 (1156)
+|+||||+|++|++++|+||||||||||+++|+|...+. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999986520 168999999987654322 357999999984 556789
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC---cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN---PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~---~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP 1034 (1156)
+.|++.+....... .....++.++++++.+++. +..+.. +..|||||||||+|||||+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999876433211 1233456688999999997 344444 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1035 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|+|||+.++..+++.|+++.++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999987 57788999999986 688888764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=322.77 Aligned_cols=216 Identities=23% Similarity=0.277 Sum_probs=174.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCe---EEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~---~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|...+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467888888773 2469999999999999999999999999999999999864322 379999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ..+++.++|++|++.+++.+|++||+.+...... ....+...+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87532 2345579999999999998999999987643321 1122333455667777776642 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999987 4777899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=323.51 Aligned_cols=212 Identities=21% Similarity=0.314 Sum_probs=167.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCC--Cc---CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMD--EF---VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~--~~---~~~~~~~yv~Q~d~~~ 238 (1156)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ ...+|+|+++|+++. .. ..++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 4999999999999999999999999999999999998762 013899999999875 21 1245799999999899
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.++....+.....+ +....++++++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKK--------------------------------ELDERVEWALKKAALWDEVKDRL-N 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHH--------------------------------HHHHHHHHHHHHcCCccchhhhh-c
Confidence 99999999998754321100000 01123456677888743211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.....|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+||.++|+..++.++||+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 3 45566788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=330.96 Aligned_cols=205 Identities=20% Similarity=0.295 Sum_probs=166.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC----c----CccceEEEEcCCCC-
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----F----VPQRTAAYISQHDN- 236 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~----~----~~~~~~~yv~Q~d~- 236 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 4999999999999999999999999999999999999998 9999999988642 1 12457999999863
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1156)
.+...||+||+.|+....+.. . .+....++.+++.++|+ ...++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~-~---------------------------------~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN-K---------------------------------QEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCCChhHhcCC
Confidence 233569999999865322110 0 00112346678889995 455544
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++||.++|+..++.++||+|
T Consensus 148 ~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 P-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEE
Confidence 3 4699999999999999999999999999999999999999999999876533 445556788888999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=323.63 Aligned_cols=207 Identities=22% Similarity=0.315 Sum_probs=164.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+ +|+|.++|+++... ..++.++|++|++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 49999999999999999999999999999999999864 34 89999999887531 1245799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++ .||+||+.|+....+.... + .....++.+++.+||.+...+.
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDK-A--------------------------------YLAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhhHH
Confidence 7777 5999999987543221100 0 0012345567778875422222
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
. ++.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+++|+|
T Consensus 143 ~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 143 L-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--AR-YTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CeEEEEEecHHHHHHhCCEE
Confidence 2 23456799999999999999999999999999999999999999999999873 24 45555778888999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 219 AFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=316.05 Aligned_cols=195 Identities=24% Similarity=0.366 Sum_probs=162.9
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999998 9999999998755432 367999999998899999999998
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
++..... ... . +....++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~-~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KLT-----A----------------------------EDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred ccccccc-Ccc-----H----------------------------HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7642110 000 0 01123567888999987766654 4699999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEc
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1156)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++.... +.+|+.++|+..++.++||+|++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999876433 445555888889999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=315.30 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=165.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 46778887763 2469999999999999999999999999999999999876 46899999998754
Q ss_pred h--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
. ..+++.++|++|++.+++.+|+.||+.+....+.. ..++.++++++.++|.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP------GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc------cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 23456789999999888999999999887543211 1235678899999998776665 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
||++||+||+++|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++. +.+.-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 99999999999999999999999999999999999999987779999999999863 54433566554
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=323.34 Aligned_cols=219 Identities=19% Similarity=0.229 Sum_probs=177.4
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITIS 930 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~ 930 (1156)
..+..+++++++. ++.+|+|+||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 4567777776653 35799999999999999999999999999999999998642 1 258999999
Q ss_pred CccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001108 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
|.++.. ..+++.++|++|++.++ .+|++||+.+....+. . ....++.++++++.+++.+......+. .+
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987532 23456799999998877 5999999998765432 1 123345688899999986432222221 24
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe---
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK--- 1082 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~--- 1082 (1156)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ ++.+.||++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999985 4799999999987 4778999999997
Q ss_pred ----cCcEEEEecCC
Q 001108 1083 ----RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ----~Gg~~~~~g~~ 1093 (1156)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 46899999874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=358.50 Aligned_cols=218 Identities=25% Similarity=0.302 Sum_probs=182.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 378899988873 2469999999999999999999999999999999999875 4689999999876
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhh----CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLR----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
... ..++.+||++|++.+++.+||+||+.++.... .....+.++.++.+.++++.++|.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 431 12346999999998899999999998753211 1001122344567889999999988777664 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
+|||||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 69999999999999999999999999999999999999999999999888999999999986 47788999999986 68
Q ss_pred EEEecCCC
Q 001108 1087 EIYVGPLG 1094 (1156)
Q Consensus 1087 ~~~~g~~~ 1094 (1156)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 88988754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=322.84 Aligned_cols=219 Identities=20% Similarity=0.238 Sum_probs=174.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.++++|+++.+. ++.+|+|+||+|++|+++||+||||||||||+++|+|...+. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 477889988774 245999999999999999999999999999999999976521 2369999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 87532 2345679999999988874 999999987543321 11222345567788888875321111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.++|+++. +|+|||++||+++ ++.+.||++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999987 47788999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 8888874
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=362.35 Aligned_cols=256 Identities=23% Similarity=0.333 Sum_probs=194.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.....+|+.++++.+.+. . +....+.+...++++|+++.++.
T Consensus 284 ~~~~~~~~~ri~~~l~~~~~~-----~---~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 328 (544)
T TIGR01842 284 FSGARQAYKRLNELLANYPSR-----D---PAMPLPEPEGHLSVENVTIVPPG--------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHHhCCccc-----c---CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 477888889998888765441 0 01112223457999999998742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
.+.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 329 -----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 400 (544)
T TIGR01842 329 -----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQD 400 (544)
T ss_pred -----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCC
Confidence 1134899999999999999999999999999999999999998 9999999999876543 4689999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++ .|++||+.+... ....+.+.+.++.. ..++.++ .|++..||
T Consensus 401 ~~lf~-~ti~~Ni~~~~~----~~~~~~~~~~~~~~---------------------------~~~~~i~--~l~~gl~t 446 (544)
T TIGR01842 401 VELFP-GTVAENIARFGE----NADPEKIIEAAKLA---------------------------GVHELIL--RLPDGYDT 446 (544)
T ss_pred ccccc-ccHHHHHhccCC----CCCHHHHHHHHHHh---------------------------ChHHHHH--hCcccccc
Confidence 87765 599999985421 11111112111110 1122333 35667789
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..||||||||++||||++++|++++|||||||||+.++..+.+.|+++.. .++|+|+ ++|... ..+.||+
T Consensus 447 ~~~~~g-~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~-ith~~~-~~~~~d~ 522 (544)
T TIGR01842 447 VIGPGG-ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVV-ITHRPS-LLGCVDK 522 (544)
T ss_pred ccCCCc-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEE-EeCCHH-HHHhCCE
Confidence 998754 56999999999999999999999999999999999999999999987642 3456555 445444 5678999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++.+
T Consensus 523 i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 523 ILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEECCEEEeeCCHHHHhh
Confidence 99999999999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=326.04 Aligned_cols=209 Identities=23% Similarity=0.352 Sum_probs=170.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
++|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 4999999999999999999999999999999999999988 999999998865432 2357999999888889999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|.||+.++.... .... .. . . ......++.+++.+||++..++.++
T Consensus 102 v~e~l~~~~~~~-~~~~--------------~~-~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 146 (265)
T PRK10575 102 VRELVAIGRYPW-HGAL--------------GR-F-G-------------AADREKVEEAISLVGLKPLAHRLVD----- 146 (265)
T ss_pred HHHHHHhCcccc-cccc--------------cC-C-C-------------HHHHHHHHHHHHHcCCHHHhcCCcc-----
Confidence 999998753210 0000 00 0 0 0011235678889999876666554
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+ ++|+.++|+..++.+++|+|++|++|+
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~-~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG-LTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999998765334 455567888889999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
+++.|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999987653
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=317.72 Aligned_cols=193 Identities=26% Similarity=0.347 Sum_probs=160.2
Q ss_pred cCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCC
Q 001108 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 878 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 957 (1156)
++++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+... ..+...+.+.+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~t 100 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELT 100 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCc
Confidence 345789999999999999999999999999999999999876 568999999976421 111233456799
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg 1037 (1156)
|+||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|
T Consensus 101 v~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 101 GRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999988754331 223344556788999999988777653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999998777899999999986 46778999999986 6777654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=325.75 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=170.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 4999999999999999999999999999999999999998 9999999998754322 356999999988888999
Q ss_pred HHHHHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 243 VRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 243 V~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
|+||+.++..-. ...... .+.....++.+++.+||++..++.+
T Consensus 98 v~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRW-------------------------------RKEDEEAVTKAMQATGITHLADQSV----- 141 (265)
T ss_pred HHHHHHhCcccccccccCC-------------------------------CHHHHHHHHHHHHHcCCHHHhcCCc-----
Confidence 999998753110 000000 0001123567888999987666544
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.... +++||.++|+..++.+++|+|++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999876432 455566788888999999999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=343.14 Aligned_cols=213 Identities=26% Similarity=0.423 Sum_probs=180.6
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.+..+..+|++|.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 4556667799999862 2379999999999999999999999999999999999877 4689999999
Q ss_pred ccCC---hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccc------ccCC
Q 001108 932 YPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS------LVGL 1002 (1156)
Q Consensus 932 ~~~~---~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~------~~~~ 1002 (1156)
.+.. ...++++++||+|++.+++ -|++||+.++. ++.+ ++.+.++++..+|.++.+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 4568889999999998876 59999998852 1222 3457888888888876654 3333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..+|||||+|||++||||+++++++++||||++||.++.+.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4578999999999999999999999999999999999999999999999976 599999999975 567899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 6 689998874
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=317.13 Aligned_cols=224 Identities=23% Similarity=0.326 Sum_probs=182.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC---CCeEEEEEEEcCc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGY 932 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~g~ 932 (1156)
++.+|++-++.... +...+++||||++++||++||+|.||||||||.++|.|... ....+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 46778876665431 23579999999999999999999999999999999999764 2345689999998
Q ss_pred cCC---hh----cccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCC
Q 001108 933 PKK---QE----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003 (1156)
Q Consensus 933 ~~~---~~----~~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~ 1003 (1156)
++- .. .+.+.++|++|++. +.|.+||.+.+.-......... .+++.++++.++|+.++|.+-....-..
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y- 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY- 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-
Confidence 642 22 12357999999974 6788999887765554432211 3455677889999999998754333333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.+|||||||||.||.||+.+|++||.||||++||...++.|+++|+++.+ .|.|+|++|||+.. +.+.||||.||.
T Consensus 151 -PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY 228 (316)
T COG0444 151 -PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY 228 (316)
T ss_pred -CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE
Confidence 357999999999999999999999999999999999999999999999986 69999999999985 889999999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
. |++|+.|+.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 799999985
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=339.94 Aligned_cols=195 Identities=24% Similarity=0.360 Sum_probs=168.7
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCCCCCCCC
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1156)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999886431 12467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.|+.+.. ....++.+++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998864200 0113567788999987776554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999876533 4556668888999999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999874
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=314.62 Aligned_cols=195 Identities=27% Similarity=0.333 Sum_probs=166.3
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5677877663 2468999999999999999999999999999999999876 468999999977532
Q ss_pred --hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 937 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
..+++.++|++|++.+++.+|++||+.+.... . .++.++++++.+++.+..++. +..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHH
Confidence 23456799999999888899999999875311 1 234578899999998776665 3569999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||++. ++.+.+++++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998777999999999986 577888999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=333.17 Aligned_cols=217 Identities=18% Similarity=0.192 Sum_probs=171.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCcCc-------cceEEEEcCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (1156)
..+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 459999999999999999999999999999999999986311 128999999998765432 246999999864
Q ss_pred --CCCCCCHHHHHHHHhhhcCC-CchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 237 --HIGEMTVRETLAFSARCQGV-GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
+.+.+||.+++.+....... +.... . ..+....+.++|+.+||.+..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~---~--------------------------~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQ---R--------------------------FGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccc---c--------------------------HHHHHHHHHHHHHHCCCCChHH
Confidence 67889999999764321100 00000 0 0011234577899999975321
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
+-+..+..|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++.. ..+.+||.++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCC
Confidence 12344567999999999999999999999999999999999999999999999765 335567778999999999999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001108 394 DIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998774
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=318.79 Aligned_cols=204 Identities=27% Similarity=0.419 Sum_probs=171.2
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 9999999998765332 467999999988899999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.++....+... .+....+.++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9988653221100 001123456788899987777655 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+||+|++.+|++++|||||+|||+.++.++.+.|++++...+. +|+.++|+..++.+++|+|++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~-tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987653344 45556778888999999999999999999
Q ss_pred EcChhHHH
Q 001108 406 QGPRELVL 413 (1156)
Q Consensus 406 ~G~~~~~~ 413 (1156)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=318.84 Aligned_cols=201 Identities=23% Similarity=0.400 Sum_probs=168.0
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999998 9999999998754322 357999999998999999999998
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
++.... .... . .....++.+++.+||++..++.+. .|||||
T Consensus 94 ~~~~~~-~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNPG-LKLN-----A----------------------------AQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred cccccc-cCCC-----H----------------------------HHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 753210 0000 0 011235678899999877776554 699999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcC
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1156)
||||+||++++.+|+++||||||+|||+.++..+.+.|+++.+..+ ++|+.++|+..++.+++|+|++|.+|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ-LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998765334 445557888889999999999999999999999
Q ss_pred hhHHH
Q 001108 409 RELVL 413 (1156)
Q Consensus 409 ~~~~~ 413 (1156)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=325.24 Aligned_cols=215 Identities=24% Similarity=0.320 Sum_probs=171.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--------ccceEEEEcCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--------PQRTAAYISQHDNH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--------~~~~~~yv~Q~d~~ 237 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|++.+
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 4999999999999999999999999999999999999875223699999998864321 13569999999888
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++..... . ..... ... ...+....++.+++.+||++..|..+
T Consensus 98 ~~~~tv~e~l~~~~~~~~--~-------~~~~~--~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~- 150 (262)
T PRK09984 98 VNRLSVLENVLIGALGST--P-------FWRTC--FSW---------------FTREQKQRALQALTRVGMVHFAHQRV- 150 (262)
T ss_pred ccCCcHHHHHHhhhcccc--c-------chhhh--ccc---------------ccHHHHHHHHHHHHHcCCHHHHhCCc-
Confidence 999999999987642100 0 00000 000 00011234677899999987766654
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++.. +++||.++|+..++.+++|+|++
T Consensus 151 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 151 ----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred ----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999876533 45566678888889999999999
Q ss_pred EcCCeEEEEcChhHH
Q 001108 398 LSDGQIVYQGPRELV 412 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (1156)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999998764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=325.13 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=174.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998874 2469999999999999999999999999999999999642 1 13689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ..+++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.. ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87632 1345679999999988874 99999987643221 1112233455778888888752 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 6 689998874
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=327.28 Aligned_cols=215 Identities=20% Similarity=0.270 Sum_probs=174.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.+.++++++.++ +..+|+|+||+|++||+++|+||||||||||+++|+|... + .+..|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999998874 2358999999999999999999999999999999999642 1 02689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC----cccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~~~ 1002 (1156)
.++.. ..+++.+||++|++.+++. ||+||+.|....+.. .+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988874 999999986543211 12223345677888888874 223332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999987 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=327.01 Aligned_cols=218 Identities=22% Similarity=0.391 Sum_probs=175.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ +++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 578999998873 12469999999999999999999999999999999999876 5689999999876
Q ss_pred ChhcccceEEEeccCCCCC--CCCCHHHHHHHHHHhhC-CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 935 KQETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.....++.++|++|++.+. ...++++++.+...... .........++.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4332334699999997653 23478888865421100 001111233456788999999988777654 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
||||++||+||+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 477889999766 4 7899988
Q ss_pred CCC
Q 001108 1092 PLG 1094 (1156)
Q Consensus 1092 ~~~ 1094 (1156)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 754
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=316.16 Aligned_cols=194 Identities=31% Similarity=0.459 Sum_probs=159.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1156)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 35999999999999999999999999999999999999998 999999998875432 2357999999864 4678
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+||+||+.++....+... .+....++.+++.+||++..+..+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999988653221100 001123566788999987666544
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|+..++..+||+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998765 3 45566678888899999999999999
Q ss_pred Ce
Q 001108 401 GQ 402 (1156)
Q Consensus 401 G~ 402 (1156)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=323.19 Aligned_cols=208 Identities=22% Similarity=0.310 Sum_probs=166.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~-----~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++| + +|+|+++|.++... ..++.++|++|++
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV---TGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---ceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 499999999999999999999999999999999999874 5 89999999887531 1246799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++ .||+||+.|+....+..... .+....++.+++.+||.+.....
T Consensus 110 ~~~~-~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 156 (267)
T PRK14235 110 NPFP-KSIYENVAYGPRIHGLARSK--------------------------------AELDEIVETSLRKAGLWEEVKDR 156 (267)
T ss_pred CCCC-CcHHHHHHHHHHhcccccch--------------------------------HHHHHHHHHHHHHcCCchhhhHH
Confidence 7777 49999999875432210000 00112356678888886422111
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
. +..++.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++.+ + .+|+.++|+..++.+++|++
T Consensus 157 ~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v 232 (267)
T PRK14235 157 L-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRT 232 (267)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEE
Confidence 1 233457999999999999999999999999999999999999999999998743 3 45555778888999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|+++.+|+.+++.
T Consensus 233 ~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 233 AFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=321.85 Aligned_cols=215 Identities=25% Similarity=0.264 Sum_probs=175.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..... +..|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478899988774 246999999999999999999999999999999999974321 1479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.++|++|++.+++ .||+||+.|....+.. ......++.+.++++.+++.+ ..+..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87642 234567999999998887 4999999987544321 122334456788888888753 22232
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 689999999986 4677899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 6 688888874
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=323.87 Aligned_cols=208 Identities=26% Similarity=0.400 Sum_probs=169.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 5999999999999999999999999999999999999988 999999998765432 2356999999988888899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|.||+.|+..... ... ... ..+....++++++.+||++..++.+ .
T Consensus 93 v~~~i~~~~~~~~--~~~----------------~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 137 (255)
T PRK11231 93 VRELVAYGRSPWL--SLW----------------GRL------------SAEDNARVNQAMEQTRINHLADRRL-----T 137 (255)
T ss_pred HHHHHHhccchhh--hhc----------------cCC------------CHHHHHHHHHHHHHcCCHHHHcCCc-----c
Confidence 9999988631000 000 000 0001123567788999987666654 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||+|++.+|++|||||||+|||+.+...+.+.|+++.. . +++|+.++|+..++.+++|++++|++|+
T Consensus 138 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 138 DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-Q-GKTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999998754 3 4455667888889999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
+++.|+.+++.
T Consensus 216 i~~~~~~~~~~ 226 (255)
T PRK11231 216 VMAQGTPEEVM 226 (255)
T ss_pred EEEEcCHHHhc
Confidence 99999987753
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=321.97 Aligned_cols=230 Identities=20% Similarity=0.273 Sum_probs=180.0
Q ss_pred CCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcH
Q 001108 112 IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191 (1156)
Q Consensus 112 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 191 (1156)
.+.+...++++||++.+. .+++|+|+|+++++|++++|+|||||||
T Consensus 14 ~~~~~~~l~~~nl~~~~~----------------------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGK 59 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYG----------------------------------KKEAIKGIDMQFEKNKITALIGPSGSGK 59 (267)
T ss_pred cCCCCeEEEEeeEEEEEC----------------------------------CeeeEeeeEEEEcCCCEEEEECCCCCCH
Confidence 344556799999998762 1249999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhH
Q 001108 192 TTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLT 264 (1156)
Q Consensus 192 STLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 264 (1156)
||||++|+|.++|. ...+|+|.++|.++... ..++.++||+|++.+++ .||+||+.++....+....
T Consensus 60 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~----- 133 (267)
T PRK14237 60 STYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDK----- 133 (267)
T ss_pred HHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCH-----
Confidence 99999999998631 01289999999987532 12457999999887776 6999999987532211000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCcc
Q 001108 265 ELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344 (1156)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~v 344 (1156)
.+....+..+++.++|.++.++.. +..++.||||||||++|||+|+.+|++
T Consensus 134 ----------------------------~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~l 184 (267)
T PRK14237 134 ----------------------------KVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDI 184 (267)
T ss_pred ----------------------------HHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 001123456788888864332222 245668999999999999999999999
Q ss_pred ceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 345 llLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
++|||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.++||+|++|++|++++.|+++++.
T Consensus 185 llLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 185 LLMDEPASALDPISTMQLEETMFELK--KN-YTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999873 34 45566778888999999999999999999999998763
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=324.57 Aligned_cols=219 Identities=23% Similarity=0.280 Sum_probs=177.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.+.++|++++++ ++.+|+||||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 478999998884 24699999999999999999999999999999999997642 14689999999
Q ss_pred ccCCh----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 932 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 932 ~~~~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++..+.+.++++.+++.+..+..... .+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSD-SPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhC-Cccc
Confidence 87532 234567999999988887 899999987643221 123334445567889999986432111111 1457
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 47788999999986 689
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 998874
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=330.72 Aligned_cols=253 Identities=24% Similarity=0.339 Sum_probs=197.8
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHhhcCCC-CCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCC
Q 001108 82 QRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPS 160 (1156)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 160 (1156)
..-+|+.++..+...+ +.++.+...+. .....|.|+|+++.+++
T Consensus 230 ltdme~mfdLl~~~~~-----v~d~pda~~L~~~~~g~v~F~~V~F~y~~------------------------------ 274 (497)
T COG5265 230 LTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDP------------------------------ 274 (497)
T ss_pred hhhHHHHHHhhccchh-----hccCCCCccccccccceEEEEEEEeeccc------------------------------
Confidence 3344555555554444 44554444443 34567999999999864
Q ss_pred CcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCC
Q 001108 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNH 237 (1156)
Q Consensus 161 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~ 237 (1156)
.+++|+++|+++++|++++++||+|+||||++++|-++++++ +|.|+++|+++.+.. .++.||.|||+.++
T Consensus 275 ---~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtvL 348 (497)
T COG5265 275 ---RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL 348 (497)
T ss_pred ---cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCccccee
Confidence 235999999999999999999999999999999999999998 999999999986543 35789999996555
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
| +-|+..|+.|+. +....+....+++..+. ... +..|++++||.||
T Consensus 349 F-NDti~yni~ygr----~~at~eev~aaa~~aqi---------------------------~~f--i~~lP~gy~t~Vg 394 (497)
T COG5265 349 F-NDTIAYNIKYGR----PDATAEEVGAAAEAAQI---------------------------HDF--IQSLPEGYDTGVG 394 (497)
T ss_pred h-hhhHHHHHhccC----ccccHHHHHHHHHHhhh---------------------------hHH--HHhCchhhhcccc
Confidence 5 569999999874 22222322222222111 111 3358999999999
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+++.+ |||||||||+|||+++.+|+||+|||.||+||+.|...|...|+..+ .++|+++.. |+..+.--+|.|+|
T Consensus 395 erglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlvia--hrlsti~~adeiiv 469 (497)
T COG5265 395 ERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIA--HRLSTIIDADEIIV 469 (497)
T ss_pred hheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEe--ehhhhccCCceEEE
Confidence 99997 99999999999999999999999999999999999999999999876 345555433 45667778999999
Q ss_pred EcCCeEEEEcChhHHHH
Q 001108 398 LSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1156)
|++|+|++.|++++++.
T Consensus 470 l~~g~i~erg~h~~ll~ 486 (497)
T COG5265 470 LDNGRIVERGTHEELLA 486 (497)
T ss_pred eeCCEEEecCcHHHHHH
Confidence 99999999999999876
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=323.93 Aligned_cols=216 Identities=19% Similarity=0.231 Sum_probs=175.1
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCC---eEEEEEEE
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 929 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i 929 (1156)
+..+.++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..... +..|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34689999998874 246999999999999999999999999999999999975321 24799999
Q ss_pred cCccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----cccccc
Q 001108 930 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLV 1000 (1156)
Q Consensus 930 ~g~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~ 1000 (1156)
+|.++.. ..+++.++|++|++.+++. ||.||+.+....+. .. ...++.+.++++.+++.. ..+..
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9987531 2345679999999888764 99999988643321 11 122344677788888742 22322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.||++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999987 47889999999
Q ss_pred Ee--------cCcEEEEecCC
Q 001108 1081 MK--------RGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~--------~Gg~~~~~g~~ 1093 (1156)
|+ +.|++++.|+.
T Consensus 233 l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 233 FNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred EecccccccccCceEEEeCCH
Confidence 97 25899999985
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=318.05 Aligned_cols=205 Identities=27% Similarity=0.410 Sum_probs=170.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++.+|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 4999999999999999999999999999999999999988 9999999998765333 36799999998888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.+.....+... . .....++++++.+++....++.+ +.|
T Consensus 91 enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHPK--A--------------------------------KIKARVEELLELVQLEGLGDRYP-----NQL 131 (237)
T ss_pred HHHHhHHHhcCCCH--H--------------------------------HHHHHHHHHHHHcCCHhHhhCCh-----hhC
Confidence 99988654321100 0 00123466788899976666544 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
|||||||++||++|+.+|++++|||||+|||..+...+.+.|+++.. ..+.+|+.++|...++.+++|+|++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 32344455677778899999999999999999
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999988764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=322.48 Aligned_cols=229 Identities=18% Similarity=0.255 Sum_probs=177.6
Q ss_pred CCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHH
Q 001108 113 DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKT 192 (1156)
Q Consensus 113 ~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKS 192 (1156)
+.|...++++|+++.+.. ..+|+|+|++|++|++++|+||||||||
T Consensus 8 ~~~~~~l~~~~l~~~~~~----------------------------------~~il~~isl~i~~Ge~~~i~G~nGsGKS 53 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYGK----------------------------------FHALKNINLDIAKNQVTAFIGPSGCGKS 53 (260)
T ss_pred cCCCceEEEEEEEEEeCC----------------------------------eEEeeceeEEEcCCCEEEEECCCCCCHH
Confidence 456777899999987621 2489999999999999999999999999
Q ss_pred HHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHH
Q 001108 193 TLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTE 265 (1156)
Q Consensus 193 TLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 265 (1156)
|||++|+|.++ |....+|+|.++|.++... ..++.++|++|++.+++ .||+||+.++.........
T Consensus 54 TLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~------ 126 (260)
T PRK10744 54 TLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSR------ 126 (260)
T ss_pred HHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCH------
Confidence 99999999986 2101289999999887421 12467999999887776 8999999886532210000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccc
Q 001108 266 LARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345 (1156)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vl 345 (1156)
.+....++.+++.+||........ +.....|||||||||+||++|+.+|++|
T Consensus 127 ---------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~ll 178 (260)
T PRK10744 127 ---------------------------AEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVL 178 (260)
T ss_pred ---------------------------HHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 001123566788888743211111 2334579999999999999999999999
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 346 lLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
||||||+|||+.++..+.+.|+++. .+ ++||.++|+..++.+++|++++|++|+++..|+.+++.
T Consensus 179 lLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 179 LLDEPCSALDPISTGRIEELITELK--QD-YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999874 34 45666778888899999999999999999999988764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=321.16 Aligned_cols=215 Identities=24% Similarity=0.318 Sum_probs=174.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1156)
.+.++|++++++ .+.+|+|+||+|++||++||+|+||||||||+++|+|...+ . +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478899998874 24699999999999999999999999999999999997641 1 3589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 224567999999988776 799999987643321 1112233456788899988842 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4799999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 6 688888764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=355.32 Aligned_cols=211 Identities=21% Similarity=0.308 Sum_probs=180.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999998874 2469999999999999999999999999999999999875 4689999999875
Q ss_pred Chh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
... . .++.+||++|++.+++.+||+||+.|.... ....++.+.++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 421 1 224689999999999999999999875311 1233456889999999987777664 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999986 47788999999986 688898
Q ss_pred cCCC
Q 001108 1091 GPLG 1094 (1156)
Q Consensus 1091 g~~~ 1094 (1156)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 8754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=314.05 Aligned_cols=199 Identities=21% Similarity=0.348 Sum_probs=165.0
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 357999999999999999999999999999999999998 999999999875432 2467999999998999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.+..... .... . +....++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~-~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPG-LKLN-----A----------------------------EQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhcc-CCcc-----H----------------------------HHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 998754211 0000 0 00123566788999987666544 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.. ..+++|+.++|+..++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999998764 334555667888889999999999999999998
Q ss_pred EcC
Q 001108 406 QGP 408 (1156)
Q Consensus 406 ~G~ 408 (1156)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=322.71 Aligned_cols=207 Identities=29% Similarity=0.426 Sum_probs=169.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 346999999987788899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.++..... ... . .+ ..+....++.+++.+||.+..++.+ .
T Consensus 92 v~e~l~~~~~~~~---------~~~------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 136 (256)
T TIGR03873 92 VRDVVALGRIPHR---------SLW------A-GD--------------SPHDAAVVDRALARTELSHLADRDM-----S 136 (256)
T ss_pred HHHHHHhcchhhh---------hhc------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCc-----c
Confidence 9999988531000 000 0 00 0001124567788999977666554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|+..++.+++|+|++|++|+
T Consensus 137 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (256)
T TIGR03873 137 TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHVVVLDGGR 214 (256)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 6999999999999999999999999999999999999999999998753 3 4456667888889999999999999999
Q ss_pred EEEEcChhHH
Q 001108 403 IVYQGPRELV 412 (1156)
Q Consensus 403 iv~~G~~~~~ 412 (1156)
+++.|+.+++
T Consensus 215 i~~~g~~~~~ 224 (256)
T TIGR03873 215 VVAAGPPREV 224 (256)
T ss_pred EEEecCHHHh
Confidence 9999998775
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=316.07 Aligned_cols=194 Identities=23% Similarity=0.385 Sum_probs=161.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~ 240 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 4999999999999999999999999999999999999988 99999999887421 124679999999888889
Q ss_pred CCHHHHHHHHhh-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.++.. .++... .+....++.+++.+||++..++.+
T Consensus 91 ~t~~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 133 (213)
T cd03262 91 LTVLENITLAPIKVKGMSK----------------------------------AEAEERALELLEKVGLADKADAYP--- 133 (213)
T ss_pred CcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhhCc---
Confidence 999999988642 111000 001123566788899987666554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.. .+ ++||.++|+..++.+++|+|++|+
T Consensus 134 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d~i~~l~ 209 (213)
T cd03262 134 --AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVADRVIFMD 209 (213)
T ss_pred --cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998764 34 445557888899999999999999
Q ss_pred CCeE
Q 001108 400 DGQI 403 (1156)
Q Consensus 400 ~G~i 403 (1156)
+|++
T Consensus 210 ~g~i 213 (213)
T cd03262 210 DGRI 213 (213)
T ss_pred CCcC
Confidence 9974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.13 Aligned_cols=204 Identities=23% Similarity=0.286 Sum_probs=168.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCC-CCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 4999999999999999999999999999999999999998 999999999875432 2467999999863 67789
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||.||+.++....+.. + .+....++.+++.+||....++.+
T Consensus 98 tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 138 (277)
T PRK13642 98 TVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVNMLDFKTREP----- 138 (277)
T ss_pred CHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 9999998865322110 0 001124567788899987666544
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++....+.| |+.++|+..++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-iil~sH~~~~~~-~~d~i~~l~~G 216 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT-VLSITHDLDEAA-SSDRILVMKAG 216 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHH-hCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999876532444 555777878875 69999999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (277)
T PRK13642 217 EIIKEAAPSELF 228 (277)
T ss_pred EEEEeCCHHHHh
Confidence 999999998875
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=325.37 Aligned_cols=213 Identities=23% Similarity=0.282 Sum_probs=173.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.++++++++.+. ++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999998874 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.++|++|++.+++. ||+||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999888775 99999988654432 111 23456888999998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE-E
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-M 1081 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~-l 1081 (1156)
+..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++ |
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999986 46778999764 5
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
+ .|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 4788888874
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=316.61 Aligned_cols=200 Identities=28% Similarity=0.440 Sum_probs=160.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCC--CCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1156)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 35999999999999999999999999999999999999998 999999998764 2356799999987653 3489
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.++...... ...... .+....++.+++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~~--~~~~~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 131 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRRLS----------------------------KADKAKVDEALERVGLSELADRQI-----G 131 (213)
T ss_pred HHHHHHhccccccc--cccCCC----------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 99999886421100 000000 001124567888999987666554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++||.++|+..++.+++|+|++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999998764 3 445666788888999999999999886
Q ss_pred EEEEc
Q 001108 403 IVYQG 407 (1156)
Q Consensus 403 iv~~G 407 (1156)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=319.73 Aligned_cols=215 Identities=24% Similarity=0.315 Sum_probs=173.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--CC-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899988774 2469999999999999999999999999999999999743 11 2479999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 1002 (1156)
.++.. ...++.+||++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999988887 6999999886543321 112222345677888887642 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 589999999987 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 688888764
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=318.59 Aligned_cols=207 Identities=24% Similarity=0.307 Sum_probs=167.1
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCceeEEEEcCccCCCcCc-cceEEEEcCCCC--CCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN--HIG 239 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1156)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999988 6 9999999998765433 257999999874 556
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+|+.|++.+.....+... .+....++.+++.+||++.. ...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~--~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPE--EVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchH--HHHhC
Confidence 7899999987643221100 00112456788999997420 11123
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++... .+++|+.++|+..++..++|+|++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34569999999999999999999999999999999999999999999987653 34455567788889999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|+++..|+++++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=353.87 Aligned_cols=219 Identities=22% Similarity=0.342 Sum_probs=180.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56788888773 24699999999999999999999999999999999998653235899999998764
Q ss_pred hh----cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCC
Q 001108 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~LS 1009 (1156)
.. ..++.+||++|++.+++.+||+||+.+....+... ....+..++.++++++.+++.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 31 12356999999998889999999998864332111 122334456788999999997654 333 34799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 47788999999986 68888
Q ss_pred ecCCC
Q 001108 1090 VGPLG 1094 (1156)
Q Consensus 1090 ~g~~~ 1094 (1156)
.|+..
T Consensus 222 ~~~~~ 226 (500)
T TIGR02633 222 TKDMS 226 (500)
T ss_pred ecCcc
Confidence 88764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=323.39 Aligned_cols=207 Identities=22% Similarity=0.259 Sum_probs=169.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCC--CCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN--HIG 239 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1156)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 45999999999999999999999999999999999999998 9999999988753221 246999999864 567
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1156)
.+||.+++.+..+....... .+....++.+++.+||. ...++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEP---------------------------------EQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 88999999886543210000 00112356788999994 5555443
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++.+.. +++||.++|+..++..+||++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 4699999999999999999999999999999999999999999999876533 445556788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=317.80 Aligned_cols=207 Identities=23% Similarity=0.353 Sum_probs=169.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478999998773 2469999999999999999999999999999999999865 5689999999765
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.++|++|++.+++ .|++||+.+....+.. . ..++.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 224567899999988876 5999999886443321 1 1234567899999995 345544 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.|||+++|+++. + +.||++++|++.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 48999999999863 4 57999999964443333
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=336.99 Aligned_cols=199 Identities=25% Similarity=0.413 Sum_probs=169.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCCCCCCCC
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1156)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999998 99999999887432 12467999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.|+.+... . . +....++++++.+||++..+..+ .
T Consensus 92 v~enl~~~~~~~~--~-----~-----------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P-----S-----------------------------ERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h-----h-----------------------------HHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998753210 0 0 01123567889999987777554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999876533 4455667888899999999999999999
Q ss_pred EEEEcChhHHH
Q 001108 403 IVYQGPRELVL 413 (1156)
Q Consensus 403 iv~~G~~~~~~ 413 (1156)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999998774
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=319.49 Aligned_cols=209 Identities=19% Similarity=0.275 Sum_probs=165.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK---LDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~---~~~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|. +++. ..+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 499999999999999999999999999999999997 3331 12899999999875421 23579999999877
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++ .||+||+.++.+..+.... + .....++++++.+||.+...+..
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKDN-A--------------------------------FIRQRVEETLKGAALWDEVKDKL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCCcchhhhh-
Confidence 76 6999999887543211000 0 01123566788888864322222
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++||.++|+..++.+.||+|++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhCCEEEE
Confidence 23455799999999999999999999999999999999999999999999873 34 4555578888899999999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001108 398 LSDGQIVYQGPRELVL 413 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1156)
|++|++++.|+++++.
T Consensus 218 l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 218 FYMGEMVEYDDTKKIF 233 (250)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999998874
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=370.73 Aligned_cols=257 Identities=24% Similarity=0.393 Sum_probs=196.3
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.+..++|+.++++.+++. .. .+....+.....++|+||++.+..
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~-----~~-~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 467 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEP-----RS-AGLAALPELRGAITFENIRFRYAP--------------------------- 467 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCc-----cC-CCCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 567888899998888776551 00 011111222457999999999742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
..+.+|+|+|++++||+.++|+|+||||||||+++|+|.++|+ +|+|++||+++++... ++.++||+|+
T Consensus 468 -----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 468 -----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQE 539 (694)
T ss_pred -----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccC
Confidence 1124899999999999999999999999999999999999998 9999999999877654 4789999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.|++|||.++.. ....+.+.++++.. + .++.+ -.|+.+.||
T Consensus 540 ~~lf-~~ti~eNi~~~~~----~~~~~~i~~a~~~~---~------------------------l~~~i--~~lp~gl~t 585 (694)
T TIGR01846 540 NVLF-SRSIRDNIALCNP----GAPFEHVIHAAKLA---G------------------------AHDFI--SELPQGYNT 585 (694)
T ss_pred Ceeh-hhhHHHHHhcCCC----CCCHHHHHHHHHHc---C------------------------hHHHH--HhCcCccCc
Confidence 6555 5799999987531 11122222222111 0 11122 246778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ .+||||||||++|||||+.+|++++||||||+||+.++..+.+.|++.. .+.|+|+ ++|.. +....||+
T Consensus 586 ~i~~~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~~-~~~~~~d~ 660 (694)
T TIGR01846 586 EVGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVII-IAHRL-STVRACDR 660 (694)
T ss_pred EecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEE-EeCCh-HHHHhCCE
Confidence 999865 5799999999999999999999999999999999999999999998863 3455555 55554 45567999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++++
T Consensus 661 ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 661 IIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999998865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=320.96 Aligned_cols=211 Identities=22% Similarity=0.336 Sum_probs=166.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 48999999999999999999999999999999999986410 1289999999886421 1245799999998889
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.++....+.... ......++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 999999999887543211000 001123566778888742111111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ + ++||.++|+..++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998742 3 45556788888999999999999
Q ss_pred c------CCeEEEEcChhHHH
Q 001108 399 S------DGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~------~G~iv~~G~~~~~~ 413 (1156)
+ +|++++.|+++++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 7 79999999988764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=322.55 Aligned_cols=224 Identities=25% Similarity=0.330 Sum_probs=178.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++... ..+. ..++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67889988774100 0000 013569999999999999999999999999999999999865 56899999998754
Q ss_pred h------hcccceEEEeccCC--CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~--~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
. ...++.++|++|++ .+.+..|+.|++.+..... ...........++++++.+++. ...+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12356799999997 3567789999987653211 1123334455788999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.||+|||||++||+||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 47778999999985 6
Q ss_pred EEEEecCCC
Q 001108 1086 QEIYVGPLG 1094 (1156)
Q Consensus 1086 ~~~~~g~~~ 1094 (1156)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 899998753
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=361.53 Aligned_cols=256 Identities=21% Similarity=0.298 Sum_probs=192.6
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.+......+|+.++++.+++. .. .....+....+++|+|+++.+..
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~-----~~--~~~~~~~~~~~I~~~~v~~~y~~--------------------------- 325 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVV-----KD--GSEPVPEGRGELDVNIRQFTYPQ--------------------------- 325 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cC--CCCCCCCCCCcEEEEEEEEECCC---------------------------
Confidence 456677788888777655431 00 00011112346999999998732
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
.+..+|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|+
T Consensus 326 -----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 326 -----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred -----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 1124899999999999999999999999999999999999998 9999999998876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+|. .|++|||.++.. ....+.+.++.+. .++ +. ....|+++.||
T Consensus 398 ~~lf~-~ti~~Ni~~~~~----~~~~~~~~~~~~~---~~l------------------------~~--~i~~lp~gl~t 443 (569)
T PRK10789 398 PFLFS-DTVANNIALGRP----DATQQEIEHVARL---ASV------------------------HD--DILRLPQGYDT 443 (569)
T ss_pred Ceecc-ccHHHHHhcCCC----CCCHHHHHHHHHH---cCC------------------------HH--HHHhCcCcccc
Confidence 76665 699999987631 1111111111111 000 00 12357788899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..||||||||++|||+++.+|++++|||||++||+.++..+.+.|+++. .++|+|++. |.. +....+|+
T Consensus 444 ~~~~~g-~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~it-H~~-~~~~~~d~ 518 (569)
T PRK10789 444 EVGERG-VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISA-HRL-SALTEASE 518 (569)
T ss_pred eecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEe-cch-hHHHcCCE
Confidence 999864 4699999999999999999999999999999999999999999998753 456666644 443 45677999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++.+|+++++++
T Consensus 519 i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998864
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=353.45 Aligned_cols=216 Identities=27% Similarity=0.337 Sum_probs=180.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 478899988874 2469999999999999999999999999999999999875 4689999999875
Q ss_pred Ch----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 935 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 935 ~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
.. ..+++.+||++|++.+++.+||+||+.+.............+.++.+.++++.++|.+..+.. +.+|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 32 123567999999998899999999998853211111122334456788999999998766655 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
|||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999987 47788999999986 577766
Q ss_pred cC
Q 001108 1091 GP 1092 (1156)
Q Consensus 1091 g~ 1092 (1156)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 54
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=318.60 Aligned_cols=210 Identities=20% Similarity=0.325 Sum_probs=165.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCcC-----ccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 4899999999999999999999999999999999998751 013899999999875321 245799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.|.....+.... + +....++.+++.+||........ +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14270 98 P-MSIYDNVAYGPRIHGIKDK-K--------------------------------ELDKIVEWALKKAALWDEVKDDL-K 142 (251)
T ss_pred C-CcHHHHHHhHHHhcCCCcH-H--------------------------------HHHHHHHHHHHHcCCchhhhhHh-h
Confidence 6 8999999987543221000 0 01123455677887742111111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
...+.|||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++.. + .+|+.++|+..++.+.||+|++|
T Consensus 143 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 3 44555778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 220 LMGDLIEFNKTEKIF 234 (251)
T ss_pred ECCeEEEeCCHHHHh
Confidence 999999999998864
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=318.11 Aligned_cols=202 Identities=27% Similarity=0.325 Sum_probs=165.9
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHH
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1156)
|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999998 9999999998765332 358999999889999999999
Q ss_pred HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChh
Q 001108 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1156)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1156)
.++......+.. ..+....++.+++.+||++..++.+ ..||||
T Consensus 76 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDLS--------------------------------KSERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcccCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 886321000000 0001123567888999987766655 469999
Q ss_pred HHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEc
Q 001108 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1156)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1156)
|||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++.+++|+|++|++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH-RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 9999999999999999999999999999999999999999876533 445566788888999999999999999999998
Q ss_pred ChhHH
Q 001108 408 PRELV 412 (1156)
Q Consensus 408 ~~~~~ 412 (1156)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 66543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=354.58 Aligned_cols=213 Identities=27% Similarity=0.409 Sum_probs=177.4
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
+..++++||+|+|+. +++.+|+|+|++|+||+++||+|+||||||||+++|+|... +.+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 357999999999852 22458999999999999999999999999999999999876 56899999999
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~ 1002 (1156)
++++ ..+++.+|||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++.+.. |+.++.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8654 456778999999988876 69999998641 2222 23466777777765542 444554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. ..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ..+.||++++|+
T Consensus 590 ~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 K-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 3 46899999999999999999999999999999999999999999999884 5899999999986 456799999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 666 ~-G~i~~~g~~ 675 (694)
T TIGR01846 666 K-GQIAESGRH 675 (694)
T ss_pred C-CEEEEeCCH
Confidence 6 799999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=365.56 Aligned_cols=210 Identities=24% Similarity=0.401 Sum_probs=175.8
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++|+||++.++ +++.+|+|+|++|+||+++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 4699999987553 1246899999999999999999999999999999999976 3 48999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~ 1003 (1156)
+.+ ..+++.++||+|++.++. -|++|||.++. ++.+ ++.++++++..++.+. .|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 653 456788999999998876 59999998852 2233 2456777777776653 35556655
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
| ..||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 3 5799999999999999999999999999999999999999999999885 5899999999985 5678999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 689988873
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=318.30 Aligned_cols=211 Identities=21% Similarity=0.307 Sum_probs=167.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+...+|+|.++|.++... ..++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 49999999999999999999999999999999999986 3111289999999887432 1246799999998889
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.++.+..+.... + +....++.+++.+|+........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNR-S--------------------------------EADEIVESSLKRVALWDEVKDRL-K 143 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 999999999876532210000 0 01123566778888754211111 1
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++.. + ++||.++|+..++.++||++++|
T Consensus 144 ~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEEE
Confidence 23557999999999999999999999999999999999999999999998753 3 45566778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++..|+++++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 221 YMGDLVECGETKKIF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=323.21 Aligned_cols=210 Identities=25% Similarity=0.395 Sum_probs=162.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. +++.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehH
Confidence 357788877641 12458999999999999999999999999999999999875 46899999998753
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHH-----HHHHHHHHc--CCCcccccccCCCCC
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELV--ELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~-----~v~~~l~~l--~l~~~~~~~~~~~~~ 1005 (1156)
. ..+++.+||++|++.+++ .||.||+.+... ........+ ..++.++.+ ++....+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----G 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----C
Confidence 2 234567999999987764 699999987421 111111100 112233333 233222222 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++. + +.||++++|++ |
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~v~~l~~-G 212 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADRIIVMEK-G 212 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999986 48999999999863 4 57999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 213 ~i~~~~~~ 220 (237)
T cd03252 213 RIVEQGSH 220 (237)
T ss_pred EEEEEcCH
Confidence 88888874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=319.88 Aligned_cols=206 Identities=25% Similarity=0.382 Sum_probs=167.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc-----CCCcCc-------cceEEEEcC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 4999999999999999999999999999999999999998 9999999987 554322 246999999
Q ss_pred CC--CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-
Q 001108 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (1156)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (1156)
++ .+++.+|+.||+.+.....+... . .+....++++++.+|+..
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGARH-Y--------------------------------GDIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccCc-H--------------------------------HHHHHHHHHHHHHcCCChh
Confidence 86 35777899999976432111000 0 001123567788999963
Q ss_pred cccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
..++. +..|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++.. ..+.+||.++|+..++.+
T Consensus 144 ~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 144 RIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHH
Confidence 44443 346999999999999999999999999999999999999999999998765 334566668888899999
Q ss_pred hcCeEEEEcCCeEEEEcChhHHH
Q 001108 391 LFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 391 ~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988763
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=362.88 Aligned_cols=257 Identities=23% Similarity=0.366 Sum_probs=194.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++.+...+|+.++++.+++. .. .....+.....++++||++.++.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 342 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEK-----DT--GTRAIERARGDVEFRNVTFRYPG--------------------------- 342 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CC--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 567788888888877655441 00 00011112346999999999742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
....+|+|+|+++++|+.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 343 -----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 343 -----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred -----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 1124899999999999999999999999999999999999998 9999999998876543 4679999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+. +++.|++|||.++..- ....+.+.++++. .+ .++.+ -.|++..||
T Consensus 415 ~~-lf~~Ti~~Ni~~~~~~---~~~~~~i~~~l~~---~~------------------------l~~~i--~~lp~gldt 461 (571)
T TIGR02203 415 VV-LFNDTIANNIAYGRTE---QADRAEIERALAA---AY------------------------AQDFV--DKLPLGLDT 461 (571)
T ss_pred cc-cccccHHHHHhcCCCC---CCCHHHHHHHHHH---cC------------------------hHHHH--HhCcCcccc
Confidence 75 5567999999876310 0111112221111 00 11111 236778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+.+ +.||||||||++|||+++.+|+|++||||||+||+.++..|.+.|++.. .++|+|+. +|+ +...+.||+
T Consensus 462 ~i~~~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIii-tH~-~~~~~~~D~ 536 (571)
T TIGR02203 462 PIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVI-AHR-LSTIEKADR 536 (571)
T ss_pred eecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEE-ehh-hHHHHhCCE
Confidence 999874 4799999999999999999999999999999999999999999998753 34565554 444 366789999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++..|+++++++
T Consensus 537 ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999998864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=361.16 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=165.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+| +.|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccc-ccc
Confidence 3899999999999999999999999999999999999998 9999999999877653 46899999987655 579
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
++|||.++.. ....+.+.++.+.. -.+..++ .|++..||.+|+.+ +
T Consensus 425 i~~Ni~~~~~----~~~d~~i~~al~~~---------------------------~l~~~i~--~lp~gldt~i~~~g-~ 470 (588)
T PRK13657 425 IEDNIRVGRP----DATDEEMRAAAERA---------------------------QAHDFIE--RKPDGYDTVVGERG-R 470 (588)
T ss_pred HHHHHhcCCC----CCCHHHHHHHHHHh---------------------------CHHHHHH--hCcccccchhcCCC-C
Confidence 9999988631 11111122211110 0111122 36778899999864 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.||||||||++|||+|+++|+|++||||||+||+.++..|.+.|++.. .++|+|+ ++|.. +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIi-itHr~-~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFI-IAHRL-STVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEE-EEecH-HHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999998753 3456555 44443 5678899999999999
Q ss_pred EEEEcChhHHHH
Q 001108 403 IVYQGPRELVLE 414 (1156)
Q Consensus 403 iv~~G~~~~~~~ 414 (1156)
++..|+++++++
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999998864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=322.54 Aligned_cols=215 Identities=21% Similarity=0.216 Sum_probs=173.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999998874 2358999999999999999999999999999999999753 1 13689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC----cccccccCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 1002 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~~~ 1002 (1156)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ....+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87631 234567999999988877 599999998654321 111222344567777777542 222322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 4778899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |++++.|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=321.53 Aligned_cols=218 Identities=19% Similarity=0.240 Sum_probs=173.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1156)
.+.++|++++++ +..+|+|+||+|++||++||+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478999998874 24689999999999999999999999999999999997431 1 2579999999
Q ss_pred ccCC-----hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++. ....++.++|++|++.+++ .|++||+.+....+. .. ...++.+.++++.+++.+..+..... .+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQ-SGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcC-Ccc
Confidence 8652 1234567999999988877 599999988654321 11 12334566778888774311111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec---
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 1083 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~--- 1083 (1156)
.||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999875 589999999987 58899999999982
Q ss_pred -----CcEEEEecCC
Q 001108 1084 -----GGQEIYVGPL 1093 (1156)
Q Consensus 1084 -----Gg~~~~~g~~ 1093 (1156)
.|++++.|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4799999874
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=317.99 Aligned_cols=202 Identities=23% Similarity=0.273 Sum_probs=165.4
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCceeEEEEcCccCCCcCc-cceEEEEcCCCC--CCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN--HIG 239 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1156)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|.++..... ++.++||+|++. +.+
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 89999999999999999999999999999999999988 6 9999999998754322 257999999864 446
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc---cccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV---CADTMV 316 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~v 316 (1156)
..|+.+++.+.+...+... ....+..+++.+||.+ ..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-- 136 (254)
T PRK10418 95 LHTMHTHARETCLALGKPA------------------------------------DDATLTAALEAVGLENAARVLKL-- 136 (254)
T ss_pred cccHHHHHHHHHHHcCCCh------------------------------------HHHHHHHHHHHcCCCChhhhhhc--
Confidence 6899999876543221100 0023466788899875 2333
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
....|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.+.+|+++
T Consensus 137 ---~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~ 212 (254)
T PRK10418 137 ---YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVA 212 (254)
T ss_pred ---CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEE
Confidence 34579999999999999999999999999999999999999999999987653 34556667888888999999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001108 397 LLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1156)
+|++|++++.|+.+++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 213 VMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEECCEEEEecCHHHHh
Confidence 99999999999988764
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=302.68 Aligned_cols=168 Identities=27% Similarity=0.417 Sum_probs=149.0
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ...+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 5678877763 2358999999999999999999999999999999999865 468999999987543
Q ss_pred --hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 937 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
..+++.++|++|++.+++.+|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999863 8999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877999999999986 477789999999875
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=319.59 Aligned_cols=210 Identities=20% Similarity=0.315 Sum_probs=164.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+...+|+|+++|.++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 48999999999999999999999999999999999986 3212389999999987431 1245799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+. ||+||+.|+....+..... +....++.+++.+|+.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNKK---------------------------------KLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCHH---------------------------------HHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 9999998865332110000 01123455677788753211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
...+.|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++. .+ .+||.++|+..++.+++|+|++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--EK-YTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEEcCHHHHHHhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999874 24 45555777888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998764
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=309.26 Aligned_cols=179 Identities=26% Similarity=0.332 Sum_probs=150.7
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-----hcccceEEEeccCCC-CC
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HS 953 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~~-~~ 953 (1156)
++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3469999999999999999999999999999999999876 468999999987531 123567999999973 23
Q ss_pred CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001108 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1156)
Q Consensus 954 ~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDE 1033 (1156)
...||+||+.+..... ..+.++..+.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999999865432 1233344556889999999988777653 5699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
||+|||+.++..+++.|+++.++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=324.90 Aligned_cols=210 Identities=19% Similarity=0.275 Sum_probs=173.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +...+|+||||+|++||++||+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999988842 12358999999999999999999999999999999999864 369999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCC------CCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------PGV 1005 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~------~~~ 1005 (1156)
.. ...++.++||+|++.+++ .|++||+.+... .. ++.++++++.++|.+..+..++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345567999999999887 599999963211 11 23567888999998766654331 123
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||+|||||++|||||+.+|+||+|||||+|||+.+...+++.|+++. +++|||+++|+++ .+ ..||++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 5899999999985 34 46999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 99999985
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=317.26 Aligned_cols=208 Identities=19% Similarity=0.275 Sum_probs=166.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++ |+ +|+|+++|+++.... .++.++|++|++.+++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 49999999999999999999999999999999999975 45 899999999876532 2457999999987776
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.||+||+.++...++..... ......++.+++.+||........ ++
T Consensus 93 -~tv~eni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~ 138 (246)
T PRK14269 93 -KSIYENISYAPKLHGMIKNK--------------------------------DEEEALVVDCLQKVGLFEEVKDKL-KQ 138 (246)
T ss_pred -ccHHHHhhhHHhhcCcccCh--------------------------------HHHHHHHHHHHHHcCCChhhhHHh-cC
Confidence 69999999865332210000 001123456788888853221111 23
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+++|+|++|+
T Consensus 139 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~ 215 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--HN-LSMIMVTHNMQQGKRVADYTAFFH 215 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CC-CEEEEEecCHHHHHhhCcEEEEEE
Confidence 456799999999999999999999999999999999999999999999864 24 456667888899999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (246)
T PRK14269 216 LGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=351.79 Aligned_cols=205 Identities=25% Similarity=0.336 Sum_probs=172.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCCCCCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFV 956 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~~~~~~~ 956 (1156)
+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 569999999999999999999999999999999999876 468999999987542 12345699999999888899
Q ss_pred CHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001108 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1156)
Q Consensus 957 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs 1036 (1156)
||+||+.+..........+.++..+.++++++.+++.+..+..+ ..|||||||||+||+||+.+|++|||||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123334457889999999987766653 5699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLA 219 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChh
Confidence 99999999999999999888999999999986 47788999999986 6899988754
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=319.70 Aligned_cols=215 Identities=26% Similarity=0.279 Sum_probs=173.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc-
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 933 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 933 (1156)
.+.++|+++.++ +..+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 377889988774 2358999999999999999999999999999999999876 468999999876
Q ss_pred ----CCh---hc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccc
Q 001108 934 ----KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 999 (1156)
Q Consensus 934 ----~~~---~~----~~~~~gyv~q~~~--~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 999 (1156)
+.. .. .++.++|++|++. +.+.+|+.||+.+....... .......+.++++++.+++.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGA--RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 11 2346899999975 34567899998754321110 111233466788999999963 55554
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeE
Q 001108 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1000 ~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998654 899999999986 477789999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99986 688888874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=390.83 Aligned_cols=257 Identities=19% Similarity=0.229 Sum_probs=196.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHh-hcCCC-CC-cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRID-RVGID-LP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1156)
.+....++||+.++++.++|.- ...+ ....+ -| ..+|+|+||++.|..
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~~-----~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1249 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEAP-----LVIENNRPPPGWPSSGSIKFEDVVLRYRP------------------------ 1249 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCccc-----ccccCCCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 3677788999998887665510 0000 00011 12 357999999999842
Q ss_pred hhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEE
Q 001108 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1156)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv 231 (1156)
...++|+|+|++|+|||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++.+... |+.++||
T Consensus 1250 --------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1250 --------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred --------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEE
Confidence 1124999999999999999999999999999999999999998 9999999999987654 5789999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
||++.+|. .||||||.++.. ...+.+.+++++. ++ +.. +-.|+.+
T Consensus 1319 pQdp~LF~-GTIreNLd~~~~-----~tdeei~~Al~~a---~l------------------------~~~--I~~lp~G 1363 (1622)
T PLN03130 1319 PQAPVLFS-GTVRFNLDPFNE-----HNDADLWESLERA---HL------------------------KDV--IRRNSLG 1363 (1622)
T ss_pred CCCCcccc-ccHHHHhCcCCC-----CCHHHHHHHHHHc---Cc------------------------HHH--HHhCccc
Confidence 99887665 699999986421 1122223332221 10 111 2246788
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
.||.||+.+. .||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++| +|++.|.. ++...
T Consensus 1364 Ldt~Vge~G~-nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~T-vI~IAHRL-~tI~~ 1438 (1622)
T PLN03130 1364 LDAEVSEAGE-NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCT-MLIIAHRL-NTIID 1438 (1622)
T ss_pred cCccccCCCC-CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCE-EEEEeCCh-HHHHh
Confidence 8999998655 699999999999999999999999999999999999999999999753 3444 45566654 45566
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
||+|++|++|+|+++|+++++++
T Consensus 1439 ~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1439 CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999874
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=317.85 Aligned_cols=210 Identities=21% Similarity=0.342 Sum_probs=165.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 4899999999999999999999999999999999998741 01289999999887532 1246799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.++....+.... + .....+++.++.+|+....+.. .+
T Consensus 97 ~-~tv~e~l~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 141 (250)
T PRK14262 97 P-MSIYDNVAFGPRIHGVKSK-H--------------------------------KLDRIVEESLKKAALWDEVKSE-LN 141 (250)
T ss_pred c-ccHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCCchhHHH-Hh
Confidence 7 8999999987533211000 0 0012245567777775321111 23
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.. + ++|+.++|+..++.+++|+|++|
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEEE
Confidence 44567999999999999999999999999999999999999999999998742 4 45666778888899999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++..|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 219 YRGELIEYGPTREIV 233 (250)
T ss_pred ECCEEEEecCHHHHH
Confidence 999999999988764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=317.59 Aligned_cols=220 Identities=24% Similarity=0.306 Sum_probs=175.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++++++.++ ++.+|+||||+|++||++||+|+||||||||+++|+|.....+..|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478899988773 2469999999999999999999999999999999999621125689999999875
Q ss_pred Chh---cccc-eEEEeccCCCCCCCCCHHHHHHHHHHhhCC----CCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 935 KQE---TFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLS----PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~~---~~~~-~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
... ...+ .++|++|++.+++.+|+.+++.+....... ......+..+.+.++++.+++. ...+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999998875432110 1111223345678889999986 34454422
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~G 1084 (1156)
..||||||||++||+||+.+|+||+|||||+|||+.++..++++|+++.++|+|||++||+++. +... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-
Confidence 2499999999999999999999999999999999999999999999988779999999999863 5455 899999975
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 799999875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=350.92 Aligned_cols=212 Identities=27% Similarity=0.429 Sum_probs=178.6
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++|+||+|+|+. +++.+|+|+|++|+|||++||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46999999999952 12468999999999999999999999999999999999876 568999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+++ ..+++.++||+|++.+++ .|++|||.++. ++.+ ++.++++++.+++.+.. |+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 654 456788999999998876 59999998751 2222 34467778887776543 4445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
...||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||+++ ..+.||++++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999886 4899999999986 4678999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 799999873
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=298.29 Aligned_cols=206 Identities=25% Similarity=0.384 Sum_probs=179.8
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCC
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 955 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~ 955 (1156)
+.+.+|++||.+|++|.+++|+|||||||||||.+++++.. ..+|+|+++|.++.. ...++.++..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 45789999999999999999999999999999999998765 568999999988643 4466777888898888888
Q ss_pred CCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001108 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1156)
Q Consensus 956 ~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPT 1035 (1156)
+||+|-+.|+..-..... ..++.+..++++++.++|.++.|+.. .+||||||||.-||+.|+.+.+.++||||-
T Consensus 90 lTV~dLv~FGRfPYSqGR-lt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPYSQGR-LTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcccCCC-CchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 999999999854332222 33556778999999999999999884 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCCC
Q 001108 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~~ 1094 (1156)
++||...+..+|+.||+++++ |+|||++.||.++ .-.++|+++.|++ |++++.|+..
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~ 221 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPD 221 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHH
Confidence 999999999999999999876 9999999999885 5567899999986 7999999964
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=317.33 Aligned_cols=210 Identities=21% Similarity=0.348 Sum_probs=164.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++||+|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 48999999999999999999999999999999999853 4212389999999887431 1246799999988777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.++....+.... + .....++.+++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK-Q--------------------------------VLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 8999999987543221000 0 00123455677777643211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.+.||+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998743 3 45666788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=311.44 Aligned_cols=197 Identities=28% Similarity=0.378 Sum_probs=164.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++..++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67788887763 2469999999999999999999999999999999999865 46899999997653
Q ss_pred hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001108 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 1015 (1156)
....++.++|++|++.+++.+|+.||+.+....+. .. .+.+.++++.++|.+..+..+ ..||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22255678999999888888999999987654321 11 234788999999987665543 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
++||+||+.+|++|+|||||+|||+.+...+++.|+++.++|+|||++||++. ++. . |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999999999999999999999999999998778999999999986 343 3 8887774
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=320.93 Aligned_cols=206 Identities=21% Similarity=0.323 Sum_probs=162.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+ +|+|.++|.++... ..++.++|++|++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 49999999999999999999999999999999999987 35 89999999876421 1235699999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++ .||+||+.+++...+... + ....++.+++.+++.......
T Consensus 104 ~l~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 104 NPFP-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ccch-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhh
Confidence 8777 599999998764332100 0 001234456666664211111
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
. +..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .+ .+||.++|+..++.++||++
T Consensus 148 ~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i 223 (269)
T PRK14259 148 L-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK--KN-FTIVIVTHNMQQAVRVSDMT 223 (269)
T ss_pred h-CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEE
Confidence 1 23445799999999999999999999999999999999999999999999874 23 45666788889999999999
Q ss_pred EEEcC-----------CeEEEEcChhHHHH
Q 001108 396 ILLSD-----------GQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~-----------G~iv~~G~~~~~~~ 414 (1156)
++|++ |++++.|+++++.+
T Consensus 224 ~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 224 AFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEeccccccccccccceEEEeCCHHHHHh
Confidence 99996 67899999988753
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=358.13 Aligned_cols=257 Identities=22% Similarity=0.348 Sum_probs=189.7
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++.+.+++ ..+..+....+.+..+++|+||++.++.
T Consensus 299 ~~~~~~~~~ri~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 346 (585)
T TIGR01192 299 IFEARAKLEDFFDLEDSVFQ-----REEPADAPELPNVKGAVEFRHITFEFAN--------------------------- 346 (585)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCccCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 34566677777776655433 1000000011122346999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+ .++|+|+|+++++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|+
T Consensus 347 ---~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 347 ---S---SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQD 417 (585)
T ss_pred ---C---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccC
Confidence 1 13899999999999999999999999999999999999998 9999999998876543 4689999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.++ +.|++|||.++.. ....+.+.++++.. + .+.. ...+++..||
T Consensus 418 ~~lf-~~ti~~Ni~~~~~----~~~~~~~~~a~~~~---~------------------------~~~~--i~~l~~g~~t 463 (585)
T TIGR01192 418 AGLF-NRSIRENIRLGRE----GATDEEVYEAAKAA---A------------------------AHDF--ILKRSNGYDT 463 (585)
T ss_pred CccC-cccHHHHHhcCCC----CCCHHHHHHHHHHh---C------------------------cHHH--HHhccccccc
Confidence 7666 5799999988631 11111111111110 0 0111 2246677789
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++.. .++|+|+ ++|..+.+ ..||+
T Consensus 464 ~~~~~~-~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~-isH~~~~~-~~~d~ 538 (585)
T TIGR01192 464 LVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFI-IAHRLSTV-RNADL 538 (585)
T ss_pred hhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEE-EEcChHHH-HcCCE
Confidence 998764 4699999999999999999999999999999999999999999998753 3456555 55555444 67999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++..|+++++.+
T Consensus 539 i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 539 VLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred EEEEECCEEEEECCHHHHHH
Confidence 99999999999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=316.18 Aligned_cols=210 Identities=26% Similarity=0.406 Sum_probs=168.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. .++.+|+|+||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEh
Confidence 3678888877631 12458999999999999999999999999999999999865 4689999999865
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccC------CCCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGV 1005 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~------~~~~ 1005 (1156)
.. ...++.++|++|++.+++ .|+.||+.+... ... +..+.++++.+++.+..+..+. ...+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 224557999999998776 699999976421 111 2345678888888776665431 0123
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||+++. .+.+|++++|++ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~--~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL--LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH--HHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999998764 899999999863 479999999986 5
Q ss_pred EEEEec
Q 001108 1086 QEIYVG 1091 (1156)
Q Consensus 1086 ~~~~~g 1091 (1156)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 776543
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=317.44 Aligned_cols=219 Identities=21% Similarity=0.267 Sum_probs=175.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--C-CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1156)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367888888763 2469999999999999999999999999999999999743 1 12589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 1006 (1156)
.++.. ...++.++|++|++.+++. |+.||+.+...... ....+...+.+.++++.+++.+........ .+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87532 2345679999999988874 99999987643221 112233456678889999885422111121 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||+|||||++|||||+.+|+||+|||||+|||+.++..+.++|+++. +|+|||+++|++. ++.+.+|++++|.+ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 799999999999999999999999999999999999999999999985 4899999999987 58888999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9998874
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=312.79 Aligned_cols=173 Identities=24% Similarity=0.295 Sum_probs=136.9
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
|.==.++|..||+++++||||-||||+.++|+|..+ +.+|. ..+ -.++|=||--.--...||++.|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~~-------~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EED-------LKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Ccc-------ceEeecceeecCCCCCcHHHHHH
Confidence 444456788999999999999999999999999776 44565 111 13678888655556789999775
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~ 1043 (1156)
-...-+... .-...++++-++|+++.++.+ .+|||||.|||+||.+|.++.++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 432211111 123467889999999998875 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1044 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1044 ~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
-.+-+.||+... .++|.+++-||..+ +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999875 48899999999864 555678888875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=305.06 Aligned_cols=170 Identities=41% Similarity=0.673 Sum_probs=147.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
..+|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 45999999999999999999999999999999999999 887 9999999998765334577999999988889999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
++||+.++.++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999764210 0
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh-hhHHhhcCeEEEEcCC
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA-PETYDLFDDIILLSDG 401 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~-~~~~~~~D~iilL~~G 401 (1156)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+.|+|+ ++|+. .++.+.+|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 4999999999999999999999999999999999999999999998754 3555555 55555 4788999999999999
Q ss_pred eEEEEc
Q 001108 402 QIVYQG 407 (1156)
Q Consensus 402 ~iv~~G 407 (1156)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=318.04 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=167.4
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
+|+||||+|++|++++|+|+||||||||+++|+|... .+|+|.++|.++.. ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999863 37999999987542 22345689999998888889999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEe
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1032 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~-------~p~illLD 1032 (1156)
||+.+.... ....+...+.++++++.++|.+..++. +..||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112233355688999999998766665 35699999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999986 47889999999986 688888875
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=315.86 Aligned_cols=210 Identities=22% Similarity=0.351 Sum_probs=163.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 489999999999999999999999999999999998753 111389999999987531 1245799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.++....+.... + .....++.+++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-K--------------------------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999987543321000 0 00123445566776642211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. .+. +|+.++|+..++.+.+|+|++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~-tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KDY-TIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCC-eEEEEEeCHHHHHhhCCEEEEE
Confidence 3345799999999999999999999999999999999999999999999873 244 4555778888899999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=317.23 Aligned_cols=207 Identities=18% Similarity=0.282 Sum_probs=162.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+ +|+|.++|.++... ..++.++|++|++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 49999999999999999999999999999999999864 45 89999999987532 1245799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1156)
.+++. ||+||+.++....+.... . ..+..+...++.+++.......
T Consensus 112 ~~~~~-tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAGERRK-----S----------------------------VLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcCCCcH-----H----------------------------HHHHHHHHHHHHcCCCcchHHH
Confidence 77774 999999886432210000 0 0011234456667764211111
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
. +..+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.. + ++|+.++|+..++.+++|+|
T Consensus 158 ~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 158 L-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred H-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCEE
Confidence 1 234457999999999999999999999999999999999999999999998743 3 45666778888899999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+.+++.
T Consensus 234 ~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=308.07 Aligned_cols=194 Identities=24% Similarity=0.300 Sum_probs=161.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 5677777663 3569999999999999999999999999999999999865 468999999987532
Q ss_pred --hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 937 --~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
..+++.++|++|++.+++.+|+.||+.+....+. . + ++.+.++++.+++.+..+..+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2244678999999888888999999987654331 1 1 235788999999987776653 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
|++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++. ++ .+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cc--cceEEee
Confidence 999999999999999999999999999999999999998778999999999975 22 3566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=303.32 Aligned_cols=171 Identities=29% Similarity=0.428 Sum_probs=150.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35678877763 2469999999999999999999999999999999999865 46899999998753
Q ss_pred h-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001108 936 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1156)
Q Consensus 936 ~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 1010 (1156)
. ..+++.++|++|++.+++..|++||+.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23456799999999888889999987542 899
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++|
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999877 899999999986 466789999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=316.97 Aligned_cols=218 Identities=21% Similarity=0.238 Sum_probs=175.8
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--C-eEEEEEE
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNIT 928 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~ 928 (1156)
++..++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ + +.+|+|.
T Consensus 13 ~~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~ 79 (265)
T PRK14252 13 TQQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII 79 (265)
T ss_pred CCceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE
Confidence 344689999998874 24699999999999999999999999999999999997642 1 2689999
Q ss_pred EcCccCC-------hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccc
Q 001108 929 ISGYPKK-------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQ 997 (1156)
Q Consensus 929 i~g~~~~-------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~ 997 (1156)
++|.+.. ...+++.+||++|++.+++. |++||+.+....... ......++.+.++++.+++.+ ..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 80 LHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred EcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 9987642 12345679999999988875 999999876533211 111223456778888888742 223
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 998 ~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||+
T Consensus 157 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 157 DL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 32 357999999999999999999999999999999999999999999999865 699999999986 47789999
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|++ |+++..|+.
T Consensus 230 i~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 230 TAYMYM-GELIEFGAT 244 (265)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 788888874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=318.97 Aligned_cols=212 Identities=28% Similarity=0.381 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCceeEEEEcCccCCCcCc---cceEEEEcCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNH 237 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~ 237 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++..
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 4999999999999999999999999999999999999874 1137999999998754322 3468999998776
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.++......... .. ..+....++.+++.+||+...++.
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~--~~----------------------------~~~~~~~~~~~l~~~~l~~~~~~~-- 142 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAG--AL----------------------------THRDGEIAWQALALAGATALVGRD-- 142 (272)
T ss_pred CCCCcHHHHHhhcccccccccc--cC----------------------------CHHHHHHHHHHHHHcCcHhhhcCC--
Confidence 6779999999885321000000 00 000112456788899998665544
Q ss_pred ccccCCCChhHHHHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 001108 318 DEMIRGISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~---------~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1156)
+..|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++....+ ++|+.++|+..++
T Consensus 143 ---~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH~~~~~ 218 (272)
T PRK13547 143 ---VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLA 218 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHH
Confidence 3469999999999999999 59999999999999999999999999998765324 4555577888889
Q ss_pred HhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 389 ~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+++|++++|++|++++.|+++++.
T Consensus 219 ~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 219 ARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHhCCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999999987763
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=316.49 Aligned_cols=216 Identities=22% Similarity=0.297 Sum_probs=173.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC--Ce--EEEEEEEc
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGNITIS 930 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~--~~G~i~i~ 930 (1156)
.+.+++++++++ ++.+|+||||+|.+||+++|+|+||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 378889988773 34689999999999999999999999999999999997642 11 22555565
Q ss_pred CccCC---hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCCC
Q 001108 931 GYPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLP 1003 (1156)
Q Consensus 931 g~~~~---~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~~ 1003 (1156)
|.+.. ....++.++|++|++.+++.+|++||+.+...... ....++.++.+.++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 65542 22345679999999999889999999998743321 1122344466888999999864 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 699999999986 46788999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 688888874
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=319.77 Aligned_cols=210 Identities=25% Similarity=0.335 Sum_probs=163.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++. .+..+|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhh
Confidence 356778777641 11358999999999999999999999999999999999876 46899999997653
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHH-----HHHHHHHHc--CCCcccccccCCCCC
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELV--ELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~-----~v~~~l~~l--~l~~~~~~~~~~~~~ 1005 (1156)
. ...++.++|++|++.+++ .||+||+.+.... .......+ .+++.++.+ ++....+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 234567999999988776 6999999875321 11111111 133444444 444443332 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||+|||||++||+||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.||++++|++ |
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G 212 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-G 212 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-C
Confidence 5799999999999999999999999999999999999999999999986 4899999999986 35 45999999987 5
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 213 ~i~~~~~~ 220 (234)
T cd03251 213 KIVERGTH 220 (234)
T ss_pred eEeeeCCH
Confidence 78887763
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=389.66 Aligned_cols=257 Identities=19% Similarity=0.245 Sum_probs=195.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhh-cCC-CCC-cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDR-VGI-DLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1156)
.+....++||+.++.+.++|.- ..... ... .-| ..+|+|+||++.|..
T Consensus 1196 ~~~~~~s~eRi~e~~~~~~e~~-----~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~------------------------ 1246 (1495)
T PLN03232 1196 AENSLNSVERVGNYIDLPSEAT-----AIIENNRPVSGWPSRGSIKFEDVHLRYRP------------------------ 1246 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCcccc-----ccccCCCCCCCCCCCCcEEEEEEEEEECC------------------------
Confidence 4566788899999887665510 00000 001 112 357999999999842
Q ss_pred hhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEE
Q 001108 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1156)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv 231 (1156)
...++|+|+|++|+|||.+||+||+|||||||+++|.|.++|+ +|+|.+||.++.+... ++.++||
T Consensus 1247 --------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232 1247 --------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred --------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEE
Confidence 1124999999999999999999999999999999999999998 9999999999877654 5789999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 001108 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1156)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1156)
||++.+|. .||||||.++.. ...+.+.++.++ .++ +.. +-.+++.
T Consensus 1316 pQdp~LF~-gTIr~NL~~~~~-----~sdeei~~al~~---a~l------------------------~~~--I~~lp~G 1360 (1495)
T PLN03232 1316 PQSPVLFS-GTVRFNIDPFSE-----HNDADLWEALER---AHI------------------------KDV--IDRNPFG 1360 (1495)
T ss_pred CCCCeeeC-ccHHHHcCCCCC-----CCHHHHHHHHHH---cCC------------------------HHH--HHhCcCC
Confidence 99887765 699999976421 111222222221 111 111 1246778
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
.||.||+.+. +||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++| +|++.|.. ++...
T Consensus 1361 Ldt~v~e~G~-~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~T-vI~IAHRl-~ti~~ 1435 (1495)
T PLN03232 1361 LDAEVSEGGE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCT-MLVIAHRL-NTIID 1435 (1495)
T ss_pred CCceecCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCE-EEEEeCCH-HHHHh
Confidence 8999998655 699999999999999999999999999999999999999999998752 3445 44566655 55666
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
||+|++|++|++++.|+++++++
T Consensus 1436 ~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1436 CDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999874
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=315.56 Aligned_cols=219 Identities=26% Similarity=0.302 Sum_probs=170.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.++ ++.+|+|+||+|++|+++||+|+||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788888774 24699999999999999999999999999999999997421156899999998754
Q ss_pred hh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHH-hhCC-C--CCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001108 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAW-LRLS-P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1156)
Q Consensus 936 ~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~-lr~~-~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 1006 (1156)
.. . .++.++|++|++.+++.+|+.+++.+... ++.. . ........+.++++++.+++. +..+..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 23468999999988887887776543211 1100 0 011223345678889999884 3444432 12
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1085 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~Gg 1085 (1156)
.||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||++||+++. +... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEEC-C
Confidence 699999999999999999999999999999999999999999999998778999999999863 5454 799999975 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 88998874
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=315.11 Aligned_cols=207 Identities=24% Similarity=0.345 Sum_probs=163.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 49999999999999999999999999999999999987631 1379999999887531 1245799999999899
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1156)
+.+|++||+.++....+.... +. ....++..++.+++. +..++
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~-~~--------------------------------~~~~~~~~l~~~~l~~~l~~~~~~ 144 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDR-DH--------------------------------LMEVAERSLRGAALWDEVKDRLKT 144 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCH-HH--------------------------------HHHHHHHHHHHcCcchhhhhhhcC
Confidence 999999999876532211000 00 011223344455543 22333
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.++.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.+.+|+
T Consensus 145 -----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~ 216 (252)
T PRK14272 145 -----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK--KV-TTIIIVTHNMHQAARVSDT 216 (252)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 24 5556678888899999999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|++++.|+++++.
T Consensus 217 i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 217 TSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=311.80 Aligned_cols=210 Identities=23% Similarity=0.274 Sum_probs=166.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc--Cc-
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS--GY- 932 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~--g~- 932 (1156)
++++|+++.++.... ...++.+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888887742100 0012469999999999999999999999999999999999865 457999998 42
Q ss_pred -cCCh---hc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCC
Q 001108 933 -PKKQ---ET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLP 1003 (1156)
Q Consensus 933 -~~~~---~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~ 1003 (1156)
+... .. .++.+||++|++.+++.+||+|++.+..... ........+.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 2346899999999999999999998864332 12233345567889999999753 3433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+.+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+...||+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 4579999999999999999999999999999999999999999999999877999999999975 3556899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=316.06 Aligned_cols=205 Identities=27% Similarity=0.413 Sum_probs=157.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++ ..|
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~t 91 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRS 91 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cch
Confidence 4899999999999999999999999999999999999998 999999998765432 245799999987665 579
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc--CCcccccccccccc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (1156)
|+||+.+... . ...+...+... . ...+..++.+ +++...+ ..
T Consensus 92 v~~nl~~~~~--~--~~~~~~~~~~~---~------------------------~~~~~~l~~l~~~~~~~~~-----~~ 135 (237)
T cd03252 92 IRDNIALADP--G--MSMERVIEAAK---L------------------------AGAHDFISELPEGYDTIVG-----EQ 135 (237)
T ss_pred HHHHhhccCC--C--CCHHHHHHHHH---H------------------------cCcHHHHHhCcccccchhh-----cC
Confidence 9999987532 1 11111111000 0 0112234444 3433333 34
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
+..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+.| |+.++|+..++ ..||++++|++
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~t-iii~sH~~~~~-~~~d~v~~l~~ 211 (237)
T cd03252 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRT-VIIIAHRLSTV-KNADRIIVMEK 211 (237)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCCHHHH-HhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999874 3445 55566776777 46999999999
Q ss_pred CeEEEEcChhHHHH
Q 001108 401 GQIVYQGPRELVLE 414 (1156)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1156)
|++++.|+++++.+
T Consensus 212 G~i~~~~~~~~~~~ 225 (237)
T cd03252 212 GRIVEQGSHDELLA 225 (237)
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=331.66 Aligned_cols=228 Identities=25% Similarity=0.365 Sum_probs=193.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
-++.++++.+++ ..++|+||||++++||++||||.||||||||+|+|+|... +.+|+|.++|.+.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 467888877663 4679999999999999999999999999999999999876 6789999999876
Q ss_pred Ch----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhC-CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 935 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. .....-++.|+|+..+.|++||.||+.++...+. ..-++.+...+...++|+.+++....+..+ .+||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCC
Confidence 42 2344568999999999999999999998766544 234566777888999999999863355554 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
.||||.|.|||||..+++||+||||||.|+......+.+.++++.++|.+||++||.++ ++++.|||+.+|++ |+.+-
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 89999999999987 68888
Q ss_pred ecCC-C-CcchhHHHHH
Q 001108 1090 VGPL-G-RHSCHLISYF 1104 (1156)
Q Consensus 1090 ~g~~-~-~~~~~~~~~f 1104 (1156)
.++. + ....+++...
T Consensus 226 ~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 226 TRPTAAETSEDELVRLM 242 (500)
T ss_pred ecccccCCCHHHHHHHh
Confidence 7773 3 3334555554
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=317.55 Aligned_cols=210 Identities=21% Similarity=0.316 Sum_probs=164.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+.+++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998740 01289999999987531 1246799999998878
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+. ||+||+.+.....+.... + .....++++++.+++.....+.. +
T Consensus 119 ~~-tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 163 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINNR-R--------------------------------VLDEAVERSLRGAALWDEVKDRL-H 163 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCcH-H--------------------------------HHHHHHHHHHHHcCCChhHHHHh-h
Confidence 75 999999887543321000 0 00112455677777753211122 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.....|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|++++. +. +|+.++|+..++.+.+|+|++|
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~-tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KY-TIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC-eEEEEeCCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 34 4555778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 241 ~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 241 YMGKLVEYGDTDTLF 255 (272)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988763
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=317.69 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=167.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCcC----ccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~~----~~~~~~yv~Q~d~~~~ 239 (1156)
++|+|+|++|++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 35 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~ 114 (276)
T PRK14271 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP 114 (276)
T ss_pred EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence 4999999999999999999999999999999999998751 012899999998875431 2467999999887777
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.++......... .+....+..+++.+||....++.. +.
T Consensus 115 -~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~~ 159 (276)
T PRK14271 115 -MSIMDNVLAGVRAHKLVPR---------------------------------KEFRGVAQARLTEVGLWDAVKDRL-SD 159 (276)
T ss_pred -ccHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhHh-hC
Confidence 8999999886432110000 001123455677888865432222 23
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++.. . .+||.++|+..++.+++|++++|+
T Consensus 160 ~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l~ 236 (276)
T PRK14271 160 SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALFF 236 (276)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4557999999999999999999999999999999999999999999998753 3 456667888899999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 237 ~G~i~~~g~~~~~~ 250 (276)
T PRK14271 237 DGRLVEEGPTEQLF 250 (276)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999998874
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=314.82 Aligned_cols=210 Identities=20% Similarity=0.330 Sum_probs=163.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 49999999999999999999999999999999999986 2111289999999886431 1245799999988777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ .||+||+.++....+.... + .....++.+++.++|........ +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14251 98 P-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDNL-D 142 (251)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHHh-c
Confidence 5 7999999886533211100 0 00123455677778742110111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.....||||||||++|||+|+.+|+++||||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.+++|+|++|
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK--HQ-YTFIMVTHNLQQAGRISDQTAFL 219 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH--cC-CeEEEEECCHHHHHhhcCEEEEE
Confidence 3445799999999999999999999999999999999999999999999874 23 45666788888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++..|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 220 MNGDLIEAGPTEEMF 234 (251)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=317.75 Aligned_cols=211 Identities=25% Similarity=0.375 Sum_probs=165.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. .+.+|+|+||+|++|++++|+|||||||||||++|+|... +..|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 4678899887741 2358999999999999999999999999999999999876 4689999999765
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccccc-C-----CCCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-G-----LPGV 1005 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-~-----~~~~ 1005 (1156)
.. ..+++.++|++|++.+++. |++||+.+... ... ...+.+.++.+++.+..+... | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999887775 99999986521 111 122344555555543332221 0 0114
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeC-C
Confidence 6799999999999999999999999999999999999999999999985 58999999999863 4 56999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 78887763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=319.44 Aligned_cols=210 Identities=28% Similarity=0.402 Sum_probs=161.8
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh
Q 001108 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1156)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1156)
+++|+++.++.. +++.+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 567787766311 12458999999999999999999999999999999999865 468999999977532
Q ss_pred ---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCCCCCC
Q 001108 937 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLPGVS 1006 (1156)
Q Consensus 937 ---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~~~~~~~ 1006 (1156)
...++.++|++|++.+++ .||+||+.+....+ ..+ .+++.++..++.+..+.. ... .+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVGE-RGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeecc-CCc
Confidence 223456999999988776 69999998753211 111 122333333332221111 111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++ +.||++++|++ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999987 7999999999986 34 48999999987 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 8888764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=360.34 Aligned_cols=213 Identities=28% Similarity=0.435 Sum_probs=178.7
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
....++|+||+|.|+. ++.+|+|+||+++|||++||+||||||||||++.|.|... +.+|+|.+||
T Consensus 325 ~~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg 390 (567)
T COG1132 325 TIGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDG 390 (567)
T ss_pred CCCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECC
Confidence 3456999999999962 3569999999999999999999999999999999999876 4689999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-------ccccccC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVG 1001 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~~ 1001 (1156)
.++++ ...++.++||+|++.++. -||+||+.++. ++.++ +.++++++..++.+ -.|+.+|
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vg 460 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATD----EEIEEALKLANAHEFIANLPDGYDTIVG 460 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhChHHHHHhCcccccceec
Confidence 88654 456788999999999887 89999999862 22233 34555555554433 3577777
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
.. +..||||||||++|||||+++|+||+||||||+||+++...|++.++++. +|+|+|+++|+++. ...+|++++|
T Consensus 461 e~-G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl 536 (567)
T COG1132 461 ER-GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVL 536 (567)
T ss_pred CC-CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEE
Confidence 43 46799999999999999999999999999999999999999999999876 67999999999863 4559999999
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
++ |+++..|+.
T Consensus 537 ~~-G~i~e~G~h 547 (567)
T COG1132 537 DN-GRIVERGTH 547 (567)
T ss_pred EC-CEEEEecCH
Confidence 97 579999974
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=357.93 Aligned_cols=211 Identities=22% Similarity=0.353 Sum_probs=179.0
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++|++|.|+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.+||.
T Consensus 338 ~~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~ 403 (592)
T PRK10790 338 SGRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGR 403 (592)
T ss_pred CCeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCE
Confidence 346999999999851 1358999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~ 1002 (1156)
++++ ..+++.++||+|++.+++. |++|||.++. +.+ ++.++++++.+++.+.. |+.+|.
T Consensus 404 ~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 404 PLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccC
Confidence 8653 4567889999999999875 9999998852 122 34578888888877543 344554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. ...||||||||++|||||+++|+||+||||||+||+++++.|++.|+++.+ ++|||++||+++ ....||++++|+
T Consensus 473 ~-g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~ 548 (592)
T PRK10790 473 Q-GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH 548 (592)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE
Confidence 3 357999999999999999999999999999999999999999999998864 699999999985 567799999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 549 ~-G~i~~~G~~ 558 (592)
T PRK10790 549 R-GQAVEQGTH 558 (592)
T ss_pred C-CEEEEEcCH
Confidence 5 799999884
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.81 Aligned_cols=203 Identities=21% Similarity=0.353 Sum_probs=162.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCc-----CccceEEEEcCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|..+ |+ +|+|.++|.++... ..++.++||+|++
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 38999999999999999999999999999999999854 35 99999999886432 1245799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----cc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VC 311 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 311 (1156)
.+++ .||+||+.|+....+.... + .....+..+++.+|+. +.
T Consensus 130 ~l~~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~l~~~ 175 (286)
T PRK14275 130 NPFP-KSIFDNIAYGPRLHGINDK-----K----------------------------QLEEIVEKSLRKAALWDEVSDR 175 (286)
T ss_pred CCCc-cCHHHHHHhHHHhcCCCcH-----H----------------------------HHHHHHHHHHHHhCCccchhhH
Confidence 7777 4999999987543211000 0 0012244556677763 22
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
.+ ..+..|||||||||+||+||+.+|++|||||||+|||+.+...+.+.|+++.. + .+||.++|+..++.++
T Consensus 176 ~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tvIivsH~~~~~~~~ 247 (286)
T PRK14275 176 LD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--S-YTIMIVTHNMQQASRV 247 (286)
T ss_pred hh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHh
Confidence 23 33457999999999999999999999999999999999999999999998742 3 4566678888999999
Q ss_pred cCeEEEEcCCeEEEEcChhHHH
Q 001108 392 FDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
+|++++|++|++++.|+++++.
T Consensus 248 ~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 248 SDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=314.78 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=163.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCC-c---CccceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDE-F---VPQRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~-~---~~~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|.++.. . ..++.++|++|++.+++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP 96 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence 49999999999999999999999999999999999987520 128999999987642 1 12457999999988787
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.||+||+.++....+.... + .....++..++.+|+.+...... +.
T Consensus 97 -~tv~~~l~~~~~~~~~~~~-~--------------------------------~~~~~~~~~~~~~~l~~~~~~~~-~~ 141 (249)
T PRK14253 97 -MSIYENVAYGLRAQGIKDK-K--------------------------------VLDEVVERSLRGAALWDEVKDRL-KS 141 (249)
T ss_pred -ccHHHHHHhHHHhcCCCch-H--------------------------------HHHHHHHHHHHHcCCchhhhHHh-hc
Confidence 8999999887533211000 0 00112344566667643221111 23
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
....|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+.+|++++|+
T Consensus 142 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l~ 218 (249)
T PRK14253 142 HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFFL 218 (249)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEEE
Confidence 3457999999999999999999999999999999999999999999998753 3 455667788889999999999999
Q ss_pred CCeEEEEcChhHH
Q 001108 400 DGQIVYQGPRELV 412 (1156)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1156)
+|++++.|+.+++
T Consensus 219 ~G~i~~~g~~~~~ 231 (249)
T PRK14253 219 MGELVEHDDTQVI 231 (249)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998765
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=314.29 Aligned_cols=211 Identities=21% Similarity=0.323 Sum_probs=165.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCcC-----ccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1156)
++|+|+||++++|++++|+||||||||||+++|+|..+ |....+|+|+++|.++.... .++.++|++|++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 98 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccc
Confidence 49999999999999999999999999999999999976 21112899999998764321 246799999998777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+. ||+||+.++....+.....+ +....++.+++.+||.+...+.+ +
T Consensus 99 ~~-tv~~ni~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (251)
T PRK14244 99 PK-SIYDNVAYGPKLHGLAKNKK--------------------------------KLDEIVEKSLTSVGLWEELGDRL-K 144 (251)
T ss_pred cC-CHHHHHHHHHHhcCCCCCHH--------------------------------HHHHHHHHHHHHcCCCchhhhHh-h
Confidence 75 99999988643221100000 01123456788889865322222 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++. .+ .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 145 DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KN-FTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhcCEEEEE
Confidence 3445799999999999999999999999999999999999999999999863 34 45556778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 222 QSGRIVEYNTTQEIF 236 (251)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=314.99 Aligned_cols=212 Identities=22% Similarity=0.291 Sum_probs=167.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 48999999999999999999999999999999999998741 2479999999886321 1245699999988777
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ +||+||+.++....+.... .+....+..+++.+++.+..+... +
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 145 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRPK---------------------------------LEIDDIVESALKDADLWDEIKHKI-H 145 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCcchhhhHh-c
Confidence 7 8999999886432211000 000123456777888754222112 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++...+ ++||.++|+..++.++||+|++|
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~-~tiiivsH~~~~i~~~~d~i~~l 224 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE-LTMVIVSHNLHQVSRLSDFTAFF 224 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhcCEEEEE
Confidence 34557999999999999999999999999999999999999999999998754334 45555788889999999999999
Q ss_pred cC-----CeEEEEcChhHHH
Q 001108 399 SD-----GQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~-----G~iv~~G~~~~~~ 413 (1156)
++ |+++++|+++++.
T Consensus 225 ~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 225 KGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred ccCCCcCceEEEeCCHHHHH
Confidence 99 9999999999874
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=318.99 Aligned_cols=198 Identities=23% Similarity=0.228 Sum_probs=159.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++ . +|+|.++|.++.... .++.++||+|++.+++ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 38999999999999999999999999999999999997 5 899999999876543 2467999999988876 59
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC-------ccccccc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-------DVCADTM 315 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt~ 315 (1156)
|++|+.+... ...+.. ...++.+|| +...+|.
T Consensus 93 v~~nl~~~~~-----~~~~~~------------------------------------~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGK-----WSDEEI------------------------------------WKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccC-----CCHHHH------------------------------------HHHHHHcCCHHHHHhCcccccce
Confidence 9999963211 011111 112223333 4456777
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
+++ ....||||||||++|||||+.+|+|++|||||++||+.+...+.+.|++.. . +++||.++|....+. .+|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~-~~tii~isH~~~~i~-~~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--A-DCTVILSEHRIEAML-ECQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--C-CCEEEEEECCHHHHH-hCCEE
Confidence 766 456799999999999999999999999999999999999999999999752 3 345566777776665 59999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999865
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=313.94 Aligned_cols=210 Identities=21% Similarity=0.304 Sum_probs=164.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCc-----CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+|+|+++++|++++|+||||||||||+++|+|..++. ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 4999999999999999999999999999999999987531 11389999999987543 1245799999998887
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+ .||+||+.|+.+..+.... . .....+..+++.++|.+...+.. +
T Consensus 100 ~-~tv~eni~~~~~~~~~~~~----~-----------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 144 (253)
T PRK14261 100 P-KSIYENVAYGPRIHGEKNK----K-----------------------------TLDTIVEKSLKGAALWDEVKDRL-H 144 (253)
T ss_pred c-ccHHHHHHhhHHhcCCCCH----H-----------------------------HHHHHHHHHHHHhcCchhhHHHh-h
Confidence 7 4999999987543221000 0 00122445566777643211111 2
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
...+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.. + .+|+.++|+..++.+.+|++++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998753 3 45555778888999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001108 399 SDGQIVYQGPRELVL 413 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1156)
++|+++..|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 222 YLGKLIEFDKTTQIF 236 (253)
T ss_pred ECCEEEEcCCHHHHH
Confidence 999999999988763
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=315.07 Aligned_cols=198 Identities=24% Similarity=0.328 Sum_probs=166.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ ++.+|+++||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 478899988874 2469999999999999999999999999999999999876 46899999872
Q ss_pred ChhcccceEEEeccCCCCCCC--CCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~--~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
..++|++|++.+++. .|+.+++.+. .... ++.+.++++.+++.+..+.. +..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHH
Confidence 358999999877665 4777776432 1111 23467899999998877765 35699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|+ + ++++.|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999987 4778899999995 4 588888
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 203 ~~ 204 (251)
T PRK09544 203 TP 204 (251)
T ss_pred CH
Confidence 75
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=357.83 Aligned_cols=259 Identities=24% Similarity=0.387 Sum_probs=190.9
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCC-cceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1156)
.++.+..++|+.+.++.+.+. ....+....+.+ ...++|+||++.++..
T Consensus 301 ~~~~~~~~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------------------- 350 (576)
T TIGR02204 301 LQRAAGAAERLIELLQAEPDI-----KAPAHPKTLPVPLRGEIEFEQVNFAYPAR------------------------- 350 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCcC-----CCCCCCccCCcCCCceEEEEEEEEECCCC-------------------------
Confidence 456777788887777654320 000000011112 2359999999997420
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcC
Q 001108 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1156)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q 233 (1156)
..+.+|+|+|++++|||.++|+||||||||||+++|+|.++|. +|+|.+||.++++... ++.++||+|
T Consensus 351 ------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 351 ------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred ------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 1135999999999999999999999999999999999999998 9999999999876654 467999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 001108 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1156)
++. +++.|++|||.++... ...+.+.++.+. .+ ..+.++ .+++..|
T Consensus 422 ~~~-lf~~Ti~~Ni~~~~~~----~~~~~~~~~l~~---~~------------------------l~~~i~--~l~~gl~ 467 (576)
T TIGR02204 422 DPV-LFAASVMENIRYGRPD----ATDEEVEAAARA---AH------------------------AHEFIS--ALPEGYD 467 (576)
T ss_pred CCc-cccccHHHHHhcCCCC----CCHHHHHHHHHH---cC------------------------cHHHHH--hCCCCCC
Confidence 765 5567999999875311 111111111111 00 011222 3566778
Q ss_pred ccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC
Q 001108 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1156)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1156)
|.+|+.+ ..||||||||++|||+++++|++++||||||+||+.++..+++.|+++. .++|+|+ ++|.. +....+|
T Consensus 468 t~i~~~g-~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~Ii-itH~~-~~~~~~d 542 (576)
T TIGR02204 468 TYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLI-IAHRL-ATVLKAD 542 (576)
T ss_pred ceeCCCC-CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCC
Confidence 9999864 4699999999999999999999999999999999999999999998863 3455555 55554 5567899
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001108 394 DIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+|++|++|+++..|+++++.+
T Consensus 543 ~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 543 RIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred EEEEEECCEEEeeecHHHHHH
Confidence 999999999999999988754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.33 Aligned_cols=221 Identities=23% Similarity=0.287 Sum_probs=174.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC---CeEEEEEEEcC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1156)
.+.++|+++.++ ++.+|+++||+|++||+++|+|+|||||||||++|+|...+ .+..|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999998874 24699999999999999999999999999999999997541 24689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC---------CCC-hHHHHHHHHHHHHHcCCCccc
Q 001108 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP---------EVD-SETRKMFIDEVMELVELNPLR 996 (1156)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~l~~~~ 996 (1156)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 223467999999988777 59999999865322100 011 122345678899999885322
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 997 ~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
...... .+..||||||||++||+||+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|+++ .+.+.||
T Consensus 191 ~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcC-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 111111 1457999999999999999999999999999999999999999999999876 589999999987 4778899
Q ss_pred eEE-EEecCcEEEEecCC
Q 001108 1077 ELF-LMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1077 ~v~-~l~~Gg~~~~~g~~ 1093 (1156)
+++ +|++ |++++.|+.
T Consensus 268 ~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLTG-GELVEYDDT 284 (305)
T ss_pred EEEEEecC-CEEEEeCCH
Confidence 975 5664 799999874
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=313.64 Aligned_cols=206 Identities=26% Similarity=0.370 Sum_probs=164.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc-----CCCcCc-------cceEEEEcC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 3899999999999999999999999999999999999998 9999999976 543221 245899999
Q ss_pred CCC--CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-
Q 001108 234 HDN--HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (1156)
Q Consensus 234 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (1156)
++. ..+.+|+.||+.+....... .... +....++.+++.+|+..
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~--------------------------------~~~~~~~~~l~~l~l~~~ 140 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIGA-RHYG--------------------------------NIRAAAHDWLEEVEIDPT 140 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhcc-cchH--------------------------------HHHHHHHHHHHHcCCChh
Confidence 864 45667999999764311100 0000 01123567888999963
Q ss_pred cccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
..++. ++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++... .+.+||.++|+..++.+
T Consensus 141 ~~~~~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 141 RIDDL-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD-LGLAVIIVTHDLGVARL 214 (253)
T ss_pred hhhcC-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence 44544 4569999999999999999999999999999999999999999999987543 34455557888899999
Q ss_pred hcCeEEEEcCCeEEEEcChhHHH
Q 001108 391 LFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 391 ~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
.+|++++|++|++++.|+.+++.
T Consensus 215 ~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 215 LAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred hcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1156 | ||||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 6e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 6e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 8e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 8e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-06 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 7e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 8e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 9e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 9e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 4e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 6e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 9e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 7e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 7e-04 |
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1156 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-16 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-22 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-16 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-16 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 5e-22 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-09 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 6e-15 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-10 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-10 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-15 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 7e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 9e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-06 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-12 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-10 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 2e-04 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 7e-10 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-05 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 7e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 6e-04 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-06 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 3e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-07 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 5e-05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 8e-06 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 8e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 3e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 5e-05 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 6e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-06 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 7e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 8e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-05 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 4e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 7e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-PKKQETFA 940
L G+S G + L+G +GAGKTT + +++ + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R Y + + E L F A S + E ++ E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1060 VVCTIH 1065
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 55/259 (21%), Positives = 90/259 (34%), Gaps = 65/259 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--- 221
ILK +S I+ G + L+GP +GKTT L ++ + P+ SG VT G ++ E
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 222 -------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
++P+ AY M E L F A
Sbjct: 85 EVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYAS------------------ 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
E + + ++ GL + + S G +++
Sbjct: 119 ----------------SSSEIEEMVERATEIAGL-----GEKIKDRVSTYSKGMVRKLLI 157
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393
++ P L +DE ++GLD ++ L+Q G ++ E L D
Sbjct: 158 ARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCD 214
Query: 394 DIILLSDGQIVYQG-PREL 411
I L+ +G IV G EL
Sbjct: 215 RIALIHNGTIVETGTVEEL 233
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 41/239 (17%)
Query: 867 MPEEMKVQGVL---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 921
M + + V+ + + + L ++ G + A++G +G GK+TL+D+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 922 YITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLF------SAWLRLSPEV 974
I + G+ Q SPF ++ + +L + + +
Sbjct: 61 KIE--------------VYQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSH- 104
Query: 975 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
D + + ++ + L L + + LS QR+ + IA + + +I +DEP
Sbjct: 105 DYQV----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEP 155
Query: 1035 TSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
TS LD IV+ + + TVV T HQP+ + ++ L+ + G
Sbjct: 156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 36/254 (14%), Positives = 80/254 (31%), Gaps = 63/254 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ + ++ + G + +LG GK+TLL L G P G +
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
++ ++ Q + +V + + G ++
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM------------------------GRST------HI 95
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA- 344
A + L L L A +SGGQ++ + ++ A+A
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--LQPAPETYDLFDDIILL 398
+ +DE ++ LD + +++ L + T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 399 SDGQIVYQGPRELV 412
+ + R ++
Sbjct: 203 NKQNFKFGETRNIL 216
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 2e-22
Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETFA 940
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
+I + + I +++ + L A L K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK-- 130
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1059
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1060 VVCTIHQPSIDIFEAFDELFLMKRG 1084
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 39/255 (15%), Positives = 77/255 (30%), Gaps = 66/255 (25%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S +L+ ++ I+ G + GP GKTTLL ++ L P G + YNG +
Sbjct: 17 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 73
Query: 220 DE------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ F+P+ +++V + L A GV + +
Sbjct: 74 TKVKGKIFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------- 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
L+ + + + +S G +RV
Sbjct: 119 -----------------------------LESVEVLDLKKK------LGELSQGTIRRVQ 143
Query: 334 TGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
++ + +D+ +D + +++ + I G +IS + E
Sbjct: 144 LASTLLVNAEI-YVLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIIS----SREELSYC 197
Query: 393 DDIILLSDGQIVYQG 407
D L
Sbjct: 198 DVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 5e-22
Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFA 940
L +SG R G + L+G +GAGK+TL+ +AG G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
Y Q ++ L + +E +++V + L+
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRST 124
Query: 1001 GLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 125 -----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 1054 VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
G +V + H D+ +L+K G
Sbjct: 180 SQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 52/265 (19%), Positives = 84/265 (31%), Gaps = 74/265 (27%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG + G++ + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV--------TT 334
+ L LD +SGG+ +RV T
Sbjct: 106 LLNDVAGA---------------LALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL--- 391
+ L L +DE LD + + L G A++ +DL
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSA--LSQQGLAIVMSS------HDLNHT 196
Query: 392 ---FDDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 197 LRHAHRAWLLKGGKMLASGRREEVL 221
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 8e-20
Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 35/224 (15%)
Query: 847 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV------LLNGVSGAFRPGVLTALM 900
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 901 GVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958
G +G GKTTL+ +LAG + G + +S P+K + F
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPGTVRQLF--- 434
Query: 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 1018
++ + F +V++ + ++ + V LS + +R+ I
Sbjct: 435 FKKI-----------RGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 1019 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1061
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 7e-14
Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT---ISGYPKKQETFARISGYC 946
RPG + L+G +G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 947 EQND---IHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
E + I +V I + L ++ E + +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1059 TVV 1061
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 40/264 (15%), Positives = 76/264 (28%), Gaps = 77/264 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--------KVSGTVTYNGH 217
+ +PG++ L+G GK+T L LAGK P L + G
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 218 DMDEFVP-----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
++ + A Q+ ++I ++ + + + ++ R K
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKRYIKI 208
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
++ + ++ L SGG+ +R
Sbjct: 209 LQLEN--------------------VLKRDIEKL------------------SGGELQRF 230
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SL 381
+G + DE S+ LD +R + VI S+
Sbjct: 231 -----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS-LL-APTKYVICVEHDLSV 283
Query: 382 LQPAPETYDLFDDIILLSDGQIVY 405
L L D + ++ VY
Sbjct: 284 LD------YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 40/220 (18%), Positives = 67/220 (30%), Gaps = 57/220 (25%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K + +L G + +++G +GKTTL+ LAG L P G
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+P+ + Q TVR+ R + + +
Sbjct: 410 ---IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR-----------GQFLNPQFQTDV---- 451
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+K L +D D V +SGG+ +RV +
Sbjct: 452 -----------------------VKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
PA +DE S LDS +R+ +++
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRR-FILHNKKTAF 522
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 3e-19
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 32/244 (13%)
Query: 824 GQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK--- 880
G S + E + K + F P+ + F ++ VD+ E V+ K
Sbjct: 309 GIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYG 368
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 938
L G R G + ++G +G GKTT + +LAG T G + ++T++ K Q
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ-- 424
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
I T+YE L S + + E+++ + + L
Sbjct: 425 --YIK--------AEYEGTVYE--LLS-----KIDSSKLNSNFYKTELLKPLGIIDLYDR 467
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1057
V LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++
Sbjct: 468 NV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522
Query: 1058 RTVV 1061
+T +
Sbjct: 523 KTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-13
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK-- 935
+ + G++ ++G +G GKTT + +LAG+ + + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
Q F R+ + + +V + + L +VD + +EV++ +EL +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENV 221
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 1056 TGRTVV 1061
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 7e-13
Identities = 64/296 (21%), Positives = 99/296 (33%), Gaps = 84/296 (28%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
K L+ G I+ G + ++GP GKTT + LAG +PT G V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-- 417
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
T AY Q+ E TV E L+ ++L +
Sbjct: 418 --------TVAYKPQYIKAEYEGTVYELLSKIDS-----------SKLNSNFYKTEL--- 455
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
LK LG+ D V D +SGG+ +RV +
Sbjct: 456 ------------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLF----- 392
+ A +DE S LD + +R + N TA V+ +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYV 538
Query: 393 -DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
D +I+ +G+ G L R+G+ FL +T R+D
Sbjct: 539 SDRLIVF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 40/218 (18%), Positives = 69/218 (31%), Gaps = 66/218 (30%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEF 222
+ ++K G + ++GP +GKTT + LAG+L P L S +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 223 VPQRTAAYI--------SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
Q+ + + + G E+L ++ K
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAV-------------KGKVRELLKKVDEVGKF-- 209
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ +K L L+ V D + +SGG+ +RV
Sbjct: 210 -------------------------EEVVKELELE-----NVLDRELHQLSGGELQRV-- 237
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLR 367
+ AL F DE S+ LD ++ +R
Sbjct: 238 ---AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 3e-19
Identities = 63/260 (24%), Positives = 95/260 (36%), Gaps = 55/260 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
TILK +S I G +L G +GKTTLL L T SGTV G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
++S + V + + S + +G Y+ + + R
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIG-VYQDIDDEIR---------- 139
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
A + LK++G+ A I +S G+K+RV M
Sbjct: 140 --------NEAHQ----------LLKLVGMSAKAQQY-----IGYLSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393
+ AL L +DE + GLD +++ L A+I + E F
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS 231
Query: 394 DIILLSDGQIVYQGPRELVL 413
I+LL DGQ + QG E +L
Sbjct: 232 KILLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETF 939
+L +S G L G++GAGKTTL+++L T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 940 ------ARISGYCEQNDIH---SPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVME 988
I G+ + + + ++ + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
LV ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 1049 TVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + ++ H +I F ++ L+K G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 59/288 (20%), Positives = 106/288 (36%), Gaps = 74/288 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK ++ IK G +T +LG GK+TL G L P+ SG + ++ +D ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + DN + +V + ++F A + E+ +R A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
LK G++ D +S GQKKRV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
A+A L +DE + GLD +I+ L + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADFLQE 435
D++ ++ +G+++ QG + V E + R P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 6e-15
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 939
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 940 ARIS---GYCEQNDIHSP---FV--TIYESLLFSAWLRLSPE---VDSETRKMFIDEVME 988
++ G Q+ P ++Y+ + F + + + +D ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFG------AVNMKLPEDEIRKRVDNALK 129
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
+ L+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 130 RTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 1049 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + G T++ H + D +F+MK G
Sbjct: 185 LLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 4e-18
Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 43/212 (20%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFARISGYCEQND 950
G ++G +G+GKTTL+ ++G G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 951 IHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG----- 1004
VT+ + + L + + D +E+++ + L
Sbjct: 82 EAYEIGVTVNDIVYLY--EEL--------KGLDRDLFLEMLKA-------LKLGEEILRR 124
Query: 1005 -VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILV 181
Query: 1064 IHQPSIDIFEAF---DELFLMKRGGQEIYVGP 1092
H ++ + G +
Sbjct: 182 TH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 47/288 (16%), Positives = 89/288 (30%), Gaps = 83/288 (28%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
K L++++ + G ++LGP SGKTTLL A++G L P SG + NG +
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGME 66
Query: 219 MDEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + Y + + + +TV + + +G+ R+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDLF----- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
E LK L L + + +S GQ V
Sbjct: 109 ---------------LEM-------LKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-- 390
ALA + +DE +D++ I +++ ++ T++
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVISRYIKE-YGK---EGILV-------THELD 186
Query: 391 ----LFDDIILLSDGQIVYQG--PREL----VLEFFASMGFRCPKRKG 428
+ G + EL ++E +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 5e-18
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G + G + ++G +G GKTT + +LAG T G I ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
I T+YE L S + + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYE--LLS-----KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1060
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1061 V 1061
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK--QETFARISGY 945
+ G++ ++G +G GK+T + +LAG+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 946 CEQNDIH----SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
+I +V + + + L + D + ++EV++ +EL + + +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREI- 156
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 64/292 (21%), Positives = 101/292 (34%), Gaps = 78/292 (26%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K L+ G IK G + ++GP GKTT + LAG +PT G + ++
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA 350
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ PQ YI E TV E L+ ++L +
Sbjct: 351 --YKPQ----YIKAD----YEGTVYELLSKIDA-----------SKLNSNFYKTEL---- 385
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
LK LG+ D V + +SGG+ +RV ++
Sbjct: 386 -----------------------LKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLFDDIIL- 397
A +DE S LD + +R + N TA V+ D+++
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE------------HDVLMI 465
Query: 398 --LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
+SD +V++G E A R+G+ FL +T R+D
Sbjct: 466 DYVSDRLMVFEG--EPGKYGRALPPM--GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 57/331 (17%), Positives = 100/331 (30%), Gaps = 99/331 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEF 222
+ V+K G + ++GP +GK+T + LAG+L P L S +E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPQRTAAYI--------SQHDNHIGEMT---VRETLAFSARCQGVGTRYEMLTELARREK 271
Q+ + I + V E L + + +L K
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------KKADETGKLEEVVK 144
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A ++ + + ++ L SGG+ +R
Sbjct: 145 ALELEN--------------------VLEREIQHL------------------SGGELQR 166
Query: 332 VTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------S 380
V + AL F DE S+ LD +R+ G +V+ +
Sbjct: 167 V-----AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR--LSEEGKSVLVVEHDLA 219
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY------QGPRELVLEFFAS------MGFRCPKRKG 428
+L L D I ++ VY +G R + EF + FR P
Sbjct: 220 VLD------YLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR-PYEIK 272
Query: 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQ 459
+ V ++ + K Y ++
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLE 303
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 1e-17
Identities = 107/738 (14%), Positives = 212/738 (28%), Gaps = 214/738 (28%)
Query: 121 YEHLNVEAEAFLASNA------LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGV 174
+ H++ E +F+ + +D+ + + I SK+ I+ V
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 175 IKPGRL-TLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVPQRTAAY 230
RL LL S + + + L L M T Y
Sbjct: 62 SGTLRLFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM------TRMY 112
Query: 231 ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY-MKAIA 289
I Q D + V F+ V +R + +L R+ ++P ++ + +
Sbjct: 113 IEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS- 161
Query: 290 TEGQEANVITDYYLK-VLGLDVCADTMVGDEMIRGI---SGGQKKRVTTGEMMVGPALAL 345
G K + LDVC V +M I + E ++ L
Sbjct: 162 --G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQKL 205
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL---QPAPETYDLFDDIILLSDGQ 402
+D + T + + + I+S A + L +P + ++ + +
Sbjct: 206 LYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAK 257
Query: 403 IVYQGPRELVLEFFASMGFRCP-----KRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVT 457
+ C + K V DFL T H T
Sbjct: 258 AW------------NAFNLSCKILLTTRFKQVTDFLSAAT-TTHISL--DHHSMTL---T 299
Query: 458 VQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMK 517
E + + + D P + ++ L+ + E ++ ++
Sbjct: 300 PDEVKSLLLKY-LDCRPQDL---PREVLTTNPRRLSI----IA--ESIRDGLAT------ 343
Query: 518 RNSFVYIF--KLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSE 575
+++ ++ KL I
Sbjct: 344 WDNWKHVNCDKLTTI--------------------------------------------- 358
Query: 576 ISMTIAKL-PVFYKQR--DFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSN 632
I ++ L P Y++ FPP A IP L + +W + V N
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTILLSL-IWFDVIKSDVMVVVN 409
Query: 633 AGRFFKQYALLLGVNQMAS----ALFRFIAVTGRNMVV--ANTFGSFALLVLLSLGGFIL 686
+Y+L+ + ++ +++ + V N + + + I
Sbjct: 410 ---KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 687 SREDIKKWWKWAYWCSPLTY----AQNAIVANEF----LGHSW--KKFTQDSSETLG--- 733
D Y+ S + + ++ F L + +K DS+
Sbjct: 467 PYLD-------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 734 ----VQVLKS-RGFFA-HEYWYWLGLGALFGFVL-----LLNFAYT----LALTFLDPFE 778
+Q LK + + ++ Y + A+ F+ L+ YT +AL
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA----- 574
Query: 779 KPRAVITEEIESNEQDDR 796
I E E+++Q R
Sbjct: 575 -EDEAIFE--EAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 5e-14
Identities = 93/600 (15%), Positives = 170/600 (28%), Gaps = 195/600 (32%)
Query: 58 KGILTTSRGEANEVD-VYNLGLQERQ--RLIDKLVKVTDVDNERFL---LK-----LKNR 106
K IL+ E+D + RL L+ + ++F+ L+ L +
Sbjct: 43 KSILSKE-----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 107 IDRVGIDLPKVEVRY-EHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHL 165
I + Y E + N F K+ + + L LR + L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDR------LYNDNQVFAKYNVSRLQPYLK-LR------QAL 144
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTL------------------------------- 194
L+ V+ + G SGKT +
Sbjct: 145 LELRPAKNVL-------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 195 ----LLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH---------DNHIGEM 241
L L ++DP + N + + N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----- 252
Query: 242 TVR--ETL-AFSARCQG-VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
V+ + AF+ C+ + TR++ +T+ I D T + ++
Sbjct: 253 -VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDEVKSL 306
Query: 298 ITDYYLKVLGLDVCADTMVGD---EMIRGISGGQKKRVTTGEMMVGP-ALALFMDEISTG 353
+ LK L D E++ P L++ + I G
Sbjct: 307 L----LKYLDCR------PQDLPREVLTT----------------NPRRLSIIAESIRDG 340
Query: 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD------------- 400
L + ++ VNC + I S +++L+PA E +FD + +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESS---LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 401 GQIVYQGPRELVLEFFA-SMGFRCPKRK--GVADFLQEVTSRKDQR-------------- 443
++ +V + S+ + PK + E+ + +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 444 --------------QYWA-----HKEKPYRFVTVQEFAEAFQSFH-VGQKISDELRTPFD 483
QY+ H + + F F F + QKI + T ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWN 515
Query: 484 KSKSHRAALTT-ETYGVGKRELLKANISRELL-------LMKRNSFVYIFK---LIQIAF 532
S S L + Y K + + E L L K + K L++IA
Sbjct: 516 ASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 2e-13
Identities = 100/669 (14%), Positives = 196/669 (29%), Gaps = 212/669 (31%)
Query: 401 GQIVYQGPRELVLEFFASM--GFRCPKRKGVADFLQEVTSRKD--------------QRQ 444
G+ YQ ++++ F + F C K V D + + S+++ R
Sbjct: 12 GEHQYQY-KDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 445 YWAHKEKPYRFVTVQEFAEAFQSFHVG---QKISDELRTPFDKSKSHRAALTTETYGVGK 501
+W K VQ+F E + I E R P ++ T Y + +
Sbjct: 68 FWTLLSKQEE--MVQKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTRMY-IEQ 115
Query: 502 RELL--------KANISRELLLMK-RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552
R+ L K N+SR +K R + + +L V + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGV-------------- 158
Query: 553 DGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA----YAIPSWILK 608
G +G T+ A+ + + DF+ F W P +L+
Sbjct: 159 -LG--SGKTWVALDVCLSYKVQ-------------CKMDFKIF--WLNLKNCNSPETVLE 200
Query: 609 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 668
+ Y + + + R + L ++ + + L R + ++ N
Sbjct: 201 MLQKL----------LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLL----KSKPYEN 245
Query: 669 TFGSFALLVLLSLGGFILSREDIKKWWKWAYW---CSPLTYAQNAIVAN---------EF 716
LLVL +++ W + C L + V +
Sbjct: 246 -----CLLVL----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 717 LGHSWKKFTQDSSETLGVQVLKS------------------------RGFFAH-EYWYWL 751
L H T D ++L ++ L R A + W +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 752 GLGALFGFVLLLNFAYTLALTFLDP------------FEK----PRAVIT---EEIESNE 792
L +L L+P F P +++ ++ ++
Sbjct: 351 NCDKL-------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 793 QDDRIGGNVQLSTLGGSSNHNTRS--GSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP 850
+ + S + +T S +++ + + +L + + K
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT----- 458
Query: 851 FEPHSLT---FDEVVYS--------VDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA- 898
F+ L D+ YS ++ PE M ++V L+ FR L
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-----LFRMVFLD-----FR--FLEQK 506
Query: 899 --LMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
+ ++++ L + YI N Y + E+N I S +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKY 564
Query: 956 VTIYESLLF 964
+ L
Sbjct: 565 TDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 3e-12
Identities = 95/603 (15%), Positives = 166/603 (27%), Gaps = 208/603 (34%)
Query: 39 EEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNER 98
EE L+ Y L I T R + +Y ++R RL + DN+
Sbjct: 84 EEVLR-------INYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYN--------DNQV 125
Query: 99 FLLKLKNRIDRVGIDLPKVEVRYEHL-NVEAEAF-------------LASNALPSF---I 141
F K + R L + L + +A + S+
Sbjct: 126 FA---KYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 142 KFYTNIF----------EDILN-----YLRIIP---SKKRHLTILKDVSGVIKPGRLTLL 183
K IF E +L +I P S+ H + +K I+ LL
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 184 LGPPSSGKTTLLLALAGKLD---------------PTLKVSGTVTYNGHDMDEFVPQRTA 228
P + LL+ L L +T + +F+ T
Sbjct: 239 KSKP--YENCLLV-----LLNVQNAKAWNAFNLSCKIL-----LTTRFKQVTDFLSAATT 286
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
+IS + + +T E + + + R + L + P + I
Sbjct: 287 THISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDL-----PREVLTTNP-----RRLSII 333
Query: 289 ATEGQEANVITDYYLKVLG------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
A ++ D + V ++ + + E +K
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD--------R 377
Query: 343 LALFMDE--ISTGL--------DSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETY- 389
L++F I T L S +VN L + SL+ QP T
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTIS 427
Query: 390 --DLFDDIILLSDG------QIV--YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSR 439
++ ++ + + IV Y P+ F +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKT---------------------FDSDDLIP 466
Query: 440 KDQRQYWA-----HKEKPYRFVTVQEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALT 493
QY+ H + + F F F + QKI + T ++ S S L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQ 525
Query: 494 T-ETYG------VGKRELL-----------KANISR-------ELLLMKRNSFVYIFKLI 528
+ Y K E L + N+ + LM + ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Query: 529 QIA 531
Q+
Sbjct: 586 QVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 4e-09
Identities = 71/358 (19%), Positives = 111/358 (31%), Gaps = 115/358 (32%)
Query: 21 WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQE 80
N + AF+ S + IL T+R D +
Sbjct: 254 QNAKAWNAFNLSCK-------------------------ILLTTR-FKQVTDFLSAATTT 287
Query: 81 RQRLIDKLVKVTDVDNERFLLK-LKNRIDRVGIDLPKVEV-------------------- 119
L + +T + + LLK L R DLP+ EV
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPR-EVLTTNPRRLSIIAESIRDGLA 342
Query: 120 ---RYEHLNVEA-----EAFLASNALPS--FIKFYTN--IFEDILNYLRIIPSKKRHLTI 167
++H+N + E+ L N L + K + +F + IP+ L++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAH----IPTIL--LSL 394
Query: 168 L------KDVSGVI-KPGRLTLLLGPPSSGKTT---LLLALAGKLD--PTLKVSGTVTYN 215
+ DV V+ K + +L+ P + + L L KL+ L S YN
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 216 ---GHDMDEFVPQRTAAYISQHDNHIG------EMTVRET--------LAF--------S 250
D D+ +P Y +HIG E R T F S
Sbjct: 455 IPKTFDSDDLIPPYLDQYFY---SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIAT--EGQEANVITDYYLKVL 306
G+ L +L + K DP + + AI E N+I Y +L
Sbjct: 512 TAWNASGSILNTLQQL-KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 1e-08
Identities = 63/428 (14%), Positives = 118/428 (27%), Gaps = 132/428 (30%)
Query: 773 FLDPFEK----------PRAVIT-EEIES-NEQDDRIGGNVQLSTLGGSSNHNTRSGSTD 820
F D F P+++++ EEI+ D + G ++L S +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 821 DIRGQ-----------QSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPE 869
++ + S+ R + F Y+V +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---------YNVSRLQ 135
Query: 870 EMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGNI- 927
L L+ L RP + GV G+GKT + +DV K + I
Sbjct: 136 PYLK---LRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 928 --TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 985
+ C + T+ E L ++ P S + +
Sbjct: 186 WLNL--------------KNCNSPE------TVLEMLQ-KLLYQIDPNWTSRSDHSSNIK 224
Query: 986 VMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVEL--VANPSIIFMDEPTSGLDARA 1042
+ ++ ++ L L L ++ + L + L V N + +
Sbjct: 225 ----LRIHSIQAELRRL-----LKSKPYENCLLV---LLNVQNAKAW------NAFNLSC 266
Query: 1043 AAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDE-----LFL----MKRGG---QEIY 1089
++ T R V + T H L L + + +
Sbjct: 267 KILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 1090 VGPLGRHSCHLISYFEAIPGVQKIKDGYNPATW-------------MLEVSAASQELALG 1136
P +S I+DG ATW ++E S E A
Sbjct: 325 TNPR------RLSIIAE-----SIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPA-- 369
Query: 1137 IDFTEHYK 1144
++ + +
Sbjct: 370 -EYRKMFD 376
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 5e-17
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 939
L +G + G + ++G +G GKTT +L G G +T I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
+ T+ + +L + + T F +EV + + L+ L +S
Sbjct: 341 P------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
V + LS + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 1060 VVCTI 1064
V I
Sbjct: 438 VTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 1e-11
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 23/185 (12%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGY------ 945
+ + ++G +G GKTT++ +LAG + N K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 946 -----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
E +H Y S + + + DEV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEI--LTKIDERGKKDEVKELLNMTNLWN--- 133
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+ LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 134 --KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 1061 VCTIH 1065
+ H
Sbjct: 191 IVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 54/298 (18%), Positives = 92/298 (30%), Gaps = 88/298 (29%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
KK L +G K G + +LGP GKTT L G++ G+VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+Y Q I P+
Sbjct: 333 ---------SYKPQR----------------------------------------IFPNY 343
Query: 280 DIDVYM---KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
D V A ++ + K L L ++ V D +SGG+ +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLF--- 392
+ A +D+ S+ LD + + +++ +I +DL
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSIHD 450
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
D II+ G+ G + + G+ +FL+E VT R+D
Sbjct: 451 YIADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 8e-10
Identities = 49/338 (14%), Positives = 100/338 (29%), Gaps = 95/338 (28%)
Query: 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYN-------GHD 218
K K + +LG GKTT+L LAG++ P + V + G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 219 M-----DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ + + + + Q+ + + GT E+LT++ R K
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKKD 120
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
+K ++ + + +L SGG +R+
Sbjct: 121 EVKELLNM--------------TNLWNKDANIL------------------SGGGLQRL- 147
Query: 334 TGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLL 382
+V +L D+ S+ LD + +R+ + VI +L
Sbjct: 148 ----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVL 200
Query: 383 QPAPETYDLFDDIILLSDGQIVY----------QGPRELVLEFFASMGFRCPKRKGVADF 432
L D I ++ VY G + + + + + +
Sbjct: 201 D------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDE-IKFM 253
Query: 433 LQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHV 470
L+EV+ + + + +F +
Sbjct: 254 LKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA 291
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 39/241 (16%)
Query: 855 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 912
+ V ++ P E K L VS G + G +G+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 913 VLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWLR 969
++AG T +G++ G KK R G Q F +++ + F+
Sbjct: 52 IVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA---- 103
Query: 970 LSPE---VDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELV 1023
+ D + + + + ME V L+ + P LS +++R+ IA +V
Sbjct: 104 --VKNFYPDRDPVPL-VKKAMEFVGLDFDSFKDRV----P--FFLSGGEKRRVAIASVIV 154
Query: 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083
P I+ +DEP GLD ++R V G+TV+ H + D + ++++
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK 213
Query: 1084 G 1084
G
Sbjct: 214 G 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 73/260 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L++VS VI G L+ G SGK+TLL +AG ++PT SG V Y+G + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 228 AAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
Q+ ++ V + +AF+ + + K A
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPLVKKA------------- 120
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG-----ISGGQKKRVTTGEMMVGP 341
++ +GLD + + +SGG+K+RV
Sbjct: 121 ----------------MEFVGLDF--------DSFKDRVPFFLSGGEKRRV--------- 147
Query: 342 ALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
A+A L +DE GLD ++ + + G VI + +
Sbjct: 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHV 205
Query: 393 DDIILLSDGQIVYQG-PREL 411
D +++L G+ V+ G E
Sbjct: 206 DRVVVLEKGKKVFDGTRMEF 225
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 936
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 937 ------ETFARISGYCEQNDIH------------SPFVTIYESLLFSAWLRLSPEVDSET 978
TF Q + ES L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 979 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ +++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1039 DARAAAIVMRTVRNTVDTGRTVV 1061
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 7e-12
Identities = 52/212 (24%), Positives = 76/212 (35%), Gaps = 41/212 (19%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L G V + D+ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y I Q + EMTV E L C G + + ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
M A + L+ L L D G+ +SGGQ K V E
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+M P + + MDE G+ I N + +
Sbjct: 168 LMTNPKM-IVMDEPIAGVAPGLAHDIFNHVLE 198
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 9e-13
Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 35/202 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPKKQETFA 940
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 941 RISGYCEQNDIHSPFVTIYESLL--FSAW------LRLSPEVDSETRKMFIDEVMELVEL 992
R N FV + L+ +A + + E ++ L+
Sbjct: 80 R-------NR-KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKER----GEYLLSE 127
Query: 993 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+GL LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 128 -------LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 1048 RTVRNTVDTGRTVVCTIHQPSI 1069
+ G ++V H+ +
Sbjct: 181 DIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 1e-06
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 58/252 (23%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDE 221
R ILK +S +K G ++G SGK+TLL L G LD PT G V G ++D
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT---EGKVFLEGKEVDY 70
Query: 222 FVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+ + ++ Q I E+T E + G + +E+
Sbjct: 71 TNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK-------EAKERG-- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ L LGL D + +SGG+++RV
Sbjct: 122 ------------------EYL-------LSELGL---GDKL--SRKPYELSGGEQQRVAI 151
Query: 335 GEMMV-GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ P L LF DE TG LDS+ T ++++ + I+ GT+++ ++ E +L
Sbjct: 152 ARALANEPIL-LFADE-PTGNLDSANTKRVMDIFLK-IN-EGGTSIV-MVTHERELAELT 206
Query: 393 DDIILLSDGQIV 404
+ + DG++V
Sbjct: 207 HRTLEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPK 934
E+ + L V+ + G ++MG SG+GK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 935 KQETFAR---ISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
+ T R I G+ Q N I P +T E++ + + E R+ E +++
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 990 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
EL + P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 1050 VRN-TVDTGRTVVCTIHQPSI 1069
++ + G+TVV H ++
Sbjct: 188 LKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 59/253 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFV 223
+ LK+V+ IK G ++GP SGK+T +L + G LD PT G V + ++
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKPT---EGEVYIDNIKTNDLD 73
Query: 224 PQRTAAY-------ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ Q N I +T E + ++ ++ E+
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL-------IFKYRGAMSGEER----- 121
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG---DEMIRGISGGQKKRVT 333
+ A E LK+ L + +++ SGGQ++RV
Sbjct: 122 ---------RKRALE----------CLKMAEL---EERFANHKPNQL----SGGQQQRVA 155
Query: 334 TGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
+ P + + D+ T LDS T +I+ L++ ++ G V+ ++
Sbjct: 156 IARALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIV 404
+ II L DG++
Sbjct: 212 GERIIYLKDGEVE 224
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 65/278 (23%), Positives = 102/278 (36%), Gaps = 88/278 (31%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVP- 224
IL+ +S + PG + ++GP SGK+TL LAG+ +V GTV + G D+ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTELARREKAAGIKPD 278
R I +AF Q GV ++ + T L G +
Sbjct: 93 DRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRVT 333
D + +L + ++++ G SGG+KKR
Sbjct: 135 DRFDFQDLMEEK------------IALLKMP--------EDLLTRSVNVGFSGGEKKRND 174
Query: 334 TGEMMV-GPALALFMDEISTGLDSSTTFQI---------VNCLRQNIHINSGTAVIS--- 380
+M V P L + +DE +GLD I VN LR +++
Sbjct: 175 ILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVTHYQ 224
Query: 381 -LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L +P D + +L G+IV G LV +
Sbjct: 225 RILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 68/205 (33%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 931
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G + G
Sbjct: 31 EDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 932 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--- 971
YP E I G V+ F L+ +
Sbjct: 88 ALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQF---F---LQTALNA 124
Query: 972 -------PEVDSETRKMFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVE 1021
+D + ++E + L+++ L +S+ VG G G ++KR I
Sbjct: 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQM 178
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIV 1046
V P + +DE SGLD A +V
Sbjct: 179 AVLEPELCILDESDSGLDIDALKVV 203
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 58/227 (25%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 935
L G++ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 936 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
QE FA TI E++ + E++ +
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT---------------TIAENIRYGREDVTMDEIEKAVK 501
Query: 980 KMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
+ + +M+L P + +LVG G LS Q++R+ IA LV NP I+ +DE TS
Sbjct: 502 EANAYDFIMKL----PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
LD + A+V + GRT + H+ S + A D + G
Sbjct: 557 LDTESEAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 937 ETFARISGYCEQNDIHS--PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
+ Q I S P + +I E++ + R+ + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEAN 1149
Query: 992 LNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
++ SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1045 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+V + + GRT + H+ S I A D + +++ G
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 6e-10
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
LLN + + G +G GK+TLM +A + G+P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----------GFPTQEE--CRT 497
Query: 943 SGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
Y E + D ++ + + E T++ I + + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+ D++ ++GP +GK+TL+ L G+L PT SG V + +
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN--------C 736
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
AYI QH E + +T + + + R++ + ++A + D + K
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPS-----EYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 287 AIATEGQEANVI 298
EG +
Sbjct: 792 IFKIEGTPRRIA 803
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 7e-10
Identities = 68/279 (24%), Positives = 107/279 (38%), Gaps = 94/279 (33%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVP- 224
ILK V+ V+ G + L+GP +GK+TL LAG P V G + +G ++ E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGENILELSPD 75
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTEL-ARREKAAGIKP 277
+R + LAF Q GV + L A+ +
Sbjct: 76 ERARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKLGR------ 111
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRV 332
+ + + + L++L D + + G SGG+KKR
Sbjct: 112 EVGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRN 152
Query: 333 TTGEM-MVGPALALFMDEISTGLDSSTTFQI---------VNCLRQNIHINSGTAVIS-- 380
++ ++ P A+ +DE +GLD I VN +R N G VI+
Sbjct: 153 EILQLLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHY 202
Query: 381 --LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L QP D + ++ DG++V G EL LE
Sbjct: 203 QRILNYIQP--------DKVHVMMDGRVVATGGPELALE 233
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 51/193 (26%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---------- 931
L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDE 76
Query: 932 -----------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 980
YP E + G VTI L + +L EV
Sbjct: 77 RARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREVGVAEFW 119
Query: 981 MFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
+ + +EL++ + L + L G G G ++KR I LV P+ +DE SG
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEGFSG--G----EKKRNEILQLLVLEPTYAVLDETDSG 173
Query: 1038 LDARAAAIVMRTV 1050
LD A +V R V
Sbjct: 174 LDIDALKVVARGV 186
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 7e-10
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 54/213 (25%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 930
D V+L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 931 GYPKKQETFA---RISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMF 982
G+ R G Q +++L + + +P + E
Sbjct: 70 GHDLALADPNWLRRQVGVVLQ-----------DNVLLNRSIIDNISLANPGMSVE----- 113
Query: 983 IDEVMELVEL-------NPLRQ---SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
+V+ +L + LR+ ++VG G LS QR+R+ IA LV NP I+ D
Sbjct: 114 --KVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFD 170
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
E TS LD + ++MR + GRTV+ H
Sbjct: 171 EATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 89/267 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL +++ IK G + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + Q DN + ++ + ++ + P ++
Sbjct: 80 WLRRQVGVVLQ-DNVLLNRSIIDNISLA-------------------------NPGMSVE 113
Query: 283 VYMKAIATEGQEANV---ITD----YYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVT 333
+ A + A I++ Y +T+VG+ +G SGGQ++R+
Sbjct: 114 KVIYAA----KLAGAHDFISELREGY-----------NTIVGE---QGAGLSGGQRQRI- 154
Query: 334 TGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----S 380
A+A L DE ++ LD + I+ + I +I S
Sbjct: 155 --------AIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS 205
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
++ A D II++ G+IV QG
Sbjct: 206 TVKNA-------DRIIVMEKGKIVEQG 225
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 40/219 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L VS PG AL+G SGAGK+T++ D+ +G I I G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 937 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VM 987
T A G Q ND TI +++ + + EV++ + I + +M
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174
Query: 988 ELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
P ++ VG G+ LS +++R+ IA ++ P II +DE TS LD +
Sbjct: 175 AF----PEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
++ V RT + H+ S + A D++ ++K G
Sbjct: 230 QASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 39/242 (16%)
Query: 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
++ F +V +S + L ++ G AL+G +G+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 915 AGRKTGGY-ITGNITISGYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFS 965
R Y G+I I G + I G Q N+ TI ++L+
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG 116
Query: 966 AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELV 1023
EV T+ + + + L P + ++VG G+ LS +R+R+ IA L+
Sbjct: 117 KLDATDEEVIKATKSAQLYDFIEAL----PKKWDTIVGNKGMK-LSGGERQRIAIARCLL 171
Query: 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083
+P I+ DE TS LD++ + + V + + RT++ H+ S I A + + L+ +
Sbjct: 172 KDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNK 228
Query: 1084 GG 1085
G
Sbjct: 229 GK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 313 DTMVGDEMIRGI--SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQN 369
DT+VG+ +G+ SGG+++R+ ++ P + + DE ++ LDS T + + +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVE-D 200
Query: 370 IHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ N +I S + A + IILL+ G+IV +G
Sbjct: 201 LRKNRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 65/308 (21%), Positives = 102/308 (33%), Gaps = 120/308 (38%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L ++ I G L ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ AY+ Q I ++RE + F G + E
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLE------------------------- 93
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
YY V + CA T +G+ +G+ SGGQK+RV
Sbjct: 94 ------------EPYYRSV--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV 136
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAV--- 378
+LA LF D +S +D+ I N + + + T +
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 379 --ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
+S L D II++S G+I G + +L + A+FL+
Sbjct: 187 HSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTY 229
Query: 437 TSRKDQRQ 444
S
Sbjct: 230 ASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 942 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 996
++ Y Q ++ ++ E++LF + + + V++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 997 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 1050
++ +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 1051 -RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +T + H + D + +M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L +S +P + A G SG GK+T+ AG ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 937 ETFA----RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSP-EVDSETRKMFIDE-VM 987
+ +I G+ Q+ + TI E+L + + ++ F V
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 988 ELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
+ + LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 124 NMPDQLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1047 MRTVRNTVDTGRTVV 1061
+ + +++ GRT +
Sbjct: 179 QKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 58/251 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL+D+S +P + GP GK+T+ L PT +G +T +G +D +
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73
Query: 226 -RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG-IKPDPDID 282
R+ ++SQ D+ I T+RE L + G T ++ ++ A ++ PD
Sbjct: 74 WRSQIGFVSQ-DSAIMAGTIRENLTYGLE--GDYTDEDLW-QVLDLAFARSFVENMPD-- 127
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVG 340
L +T VG+ RG+ SGGQ++R+ +
Sbjct: 128 ------------------------QL----NTEVGE---RGVKISGGQRQRLAIARAFLR 156
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDII 396
L +DE + LDS + + L ++ T VI S + A D I
Sbjct: 157 NPKILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLSTIVDA-------DKIY 208
Query: 397 LLSDGQIVYQG 407
+ GQI G
Sbjct: 209 FIEKGQITGSG 219
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 60/295 (20%), Positives = 101/295 (34%), Gaps = 100/295 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---F 222
+L D+S + PG + ++G GKTTLL LAG P SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+P +R Y+ Q H +TV +A+ T + +R +A
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEAM- 122
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
L++ G+ A +SGGQ++R
Sbjct: 123 ----------------------------LELTGISELA-----GRYPHELSGGQQQRA-- 147
Query: 335 GEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385
ALA + +DE + LD QI + +G + + +
Sbjct: 148 -------ALARALAPDPELILLDEPFSALDEQLRRQIREDMIA-ALRANGKSAVFV---- 195
Query: 386 PETYD------LFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++D D I ++ G+I+ P EL +R P A F+
Sbjct: 196 --SHDREEALQYADRIAVMKQGRILQTASPHEL---------YRQPADLDAALFI 239
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
LN +S + PG + ++G SG GKTTL+ LAG + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 941 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R GY Q P +T+Y ++ + R + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 999 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 898 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSP 954
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014
+++Y ++ + LR V+ + R + E+ E + + L + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDAR 1041
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 75/183 (40%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQ------HD 235
LLGP +GK+ L +AG + P G V NG D+ P +R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEA 295
++V +A+ G R E RR +
Sbjct: 85 -----LSVYRNIAY-------GLRNVERVERDRRVREM---------------------- 110
Query: 296 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA---------LF 346
+ LG+ + D +SGG+++RV ALA L
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRV---------ALARALVIQPRLLL 149
Query: 347 MDE 349
+DE
Sbjct: 150 LDE 152
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+K + + G++ L+G +GKTT L A+AG + G + +NG D+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFSAR-CQGVGTRYEMLTEL-----ARREKAA 273
A + + E+TV E L A++ + +G+ E + L R ++
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 274 G 274
G
Sbjct: 138 G 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 8e-06
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
+ + G+ G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 936 QETFARISGYCEQNDIHSP-----F--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 988
I+ P F +T+YE+L+ A+ R D E K ++ +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 989 LV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
L L + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1048 RTVRNTVDTGRTV 1060
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 47/197 (23%), Positives = 71/197 (36%), Gaps = 67/197 (34%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
++ VS I+ G + LLGP SGKTT+L +AG PT G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 QRTAAYISQHD---NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R + Q+ H MTV + ++F R + V E+ R +
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL-------- 129
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
L+ + L+ + +SGGQ++RV
Sbjct: 130 ---------------------LRFMRLE-----SYANRFPHELSGGQQQRV--------- 154
Query: 342 ALA---------LFMDE 349
ALA L DE
Sbjct: 155 ALARALAPRPQVLLFDE 171
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
R G QN +T+Y+++ F + P+ + + R + E++ + L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 114/272 (41%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G + ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ + I T++E + F G Y+
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYD------------------------- 96
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
Y V + C + ++G+ GI SGGQ+ R+
Sbjct: 97 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 139
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVI-- 379
+LA L LD T +I +C+ + + I
Sbjct: 140 ---------SLARAVYKDADLYLLDSPFGY-LDVLTEKEIFESCVCKLMA---NKTRILV 186
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
L+ A D I++L +G + G
Sbjct: 187 TSKMEHLKKA-------DKILILHEGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 942 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
IS +C Q ++ TI E+++F + V++ +L
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 999 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +T + + ++ + D++ ++ G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 45/213 (21%), Positives = 73/213 (34%), Gaps = 63/213 (29%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 935
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 936 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
QE F R + E++ + + E +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGLTRTPTMEEITAVA 130
Query: 980 KM-----FIDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033
FI P + VG G LS QR+ + +A L+ P ++ +D
Sbjct: 131 MESGAHDFI---SGF----PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDN 182
Query: 1034 PTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1065
TS LDA V R + + RTV+
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 57/273 (20%), Positives = 95/273 (34%), Gaps = 98/273 (35%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L+ ++ + PG++T L+GP SGK+T+ L PT G V +G + ++
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHH 89
Query: 226 ---RTAAYISQHDNHIGE-----MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
A + Q E + RE +A+ T E+ A
Sbjct: 90 YLHTQVAAVGQ------EPLLFGRSFRENIAYG--LTRTPTMEEI-------TAVA---- 130
Query: 278 DPDIDVYMKAIATEGQEANV---ITD----YYLKVLGLDVCADTMVGDEMIRGI--SGGQ 328
E+ I+ Y DT VG+ G SGGQ
Sbjct: 131 ---------------MESGAHDFISGFPQGY-----------DTEVGE---TGNQLSGGQ 161
Query: 329 KKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
++ V ALA L +D ++ LD+ ++ L ++ S T ++
Sbjct: 162 RQAV---------ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 380 -----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
SL + A I+ L +G + QG
Sbjct: 213 ITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 58/302 (19%), Positives = 102/302 (33%), Gaps = 89/302 (29%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
R + L +VS + G++ ++G +GK+TL+ + PT G+V +G +
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 91
Query: 219 MDEFVPQRTAAY------ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ I QH N + TV +A + +
Sbjct: 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 144
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
+ L ++GL D+ + +SGGQK+RV
Sbjct: 145 TEL---------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 172
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGT----------- 376
+ ALA L D+ ++ LD +TT I+ L+ IN
Sbjct: 173 A-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILLITHEM 224
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
V+ + D + ++S+G+++ Q V E F+ PK F+Q
Sbjct: 225 DVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQST 267
Query: 437 TS 438
Sbjct: 268 LH 269
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 941 RIS-GYCEQ--NDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 995
R G Q N + S T++ ++ L L P+ + + R V EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELDNTPKDEVKRR------VTELLSL--- 150
Query: 996 RQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
VGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 ----VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 30/195 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV--------SWD 85
Query: 944 GYCEQNDIHSPFVTIY-ESLLFSAWLR--LSP---EVDSETRKMFIDEVMELVELNPLRQ 997
+ F I + +FS R L P D E I +V + V L + +
Sbjct: 86 SITLE-QWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE-----IWKVADEVGLRSVIE 139
Query: 998 SLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
G + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 140 QFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLK 199
Query: 1052 NTVDTGRTVVCTIHQ 1066
TV+ +
Sbjct: 200 QAF-ADCTVILCEAR 213
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 50/273 (18%), Positives = 93/273 (34%), Gaps = 115/273 (42%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G + ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ ++ I T++E + +G Y+
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYD------------------------- 125
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
Y V + C + ++G+ GI SGGQ+ R+
Sbjct: 126 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 168
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVI-- 379
+LA L LD T +I +C+ + + + I
Sbjct: 169 ---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLM---ANKTRILV 215
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP 408
L+ A D I++L +G + G
Sbjct: 216 TSKMEHLKKA-------DKILILHEGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 42/213 (19%), Positives = 88/213 (41%), Gaps = 44/213 (20%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 942 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 996
IS +C Q + ++ TI E+++ ++ D V++ +L +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEY----RYRSVIKACQLEEDISK 144
Query: 997 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +T + + ++ + D++ ++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 57/191 (29%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 930
+++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 931 GYPKK---------------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--- 972
G+ K Q+ S T+ E++L R +
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG---RPTATDE 445
Query: 973 EVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030
EV + + +M L P + VG GV LS Q++RL+IA + NP I+
Sbjct: 446 EVVEAAKMANAHDFIMNL----PQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 500
Query: 1031 MDEPTSGLDAR 1041
+DE TS LD
Sbjct: 501 LDEATSALDLE 511
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 76/200 (38%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L ++S ++ G ++LGP +GKT L +AG P SG + +G D+ + P
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 225 QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ A++ Q H M V++ L F R + + ++
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI----------KDPKRVL----- 109
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ + L ++ + D +SGG+++RV
Sbjct: 110 ---------------DT-------ARDLKIE-----HLLDRNPLTLSGGEQQRV------ 136
Query: 339 VGPALA---------LFMDE 349
ALA L +DE
Sbjct: 137 ---ALARALVTNPKILLLDE 153
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSL 999
+ QN P + + ++L F +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 1000 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 38/179 (21%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGNITIS 930
K+V L+ V+ G ++G SGAGKTT M ++AG + G + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 931 GYPKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
P+ ++ F Q P +T +E++ F + + R ++EV
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 988 ELVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
++++++ + R+ LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 48/285 (16%), Positives = 94/285 (32%), Gaps = 86/285 (30%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L +V+ I+ G +LGP +GKTT + +AG P+ +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 226 RTAAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
D IG +T E +AF +
Sbjct: 76 IVPP----EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM------------------- 112
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
+I ++ +A K+L + V + R +SG Q++RV
Sbjct: 113 -SKEEIRKRVEEVA--------------KILDI-----HHVLNHFPRELSGAQQQRVALA 152
Query: 336 EMMVGPALALFMDEISTGLDS----STTFQIVNCLRQNIHINSGTAVISLLQPAPETYD- 390
+V L +DE + LD+ S + + + G ++ + ++D
Sbjct: 153 RALVKDPSLLLLDEPFSNLDARMRDSARALV-----KEVQSRLGVTLLVV------SHDP 201
Query: 391 -----LFDDIILLSDGQI--------VYQGPREL-VLEFFASMGF 421
+ D + +L G++ +Y P + V +
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE 246
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 39/182 (21%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 930
++K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 931 GYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKM 981
G+ + R Q ND TI ++ ++A + E ++ R+
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAAEGEYTREQIEQAARQA 457
Query: 982 FIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
E + + P +++G G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 458 HAMEFIENM----PQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 1040 AR 1041
Sbjct: 513 TE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 937 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKMFIDE-V 986
T A Q ND T+ ++ ++ S E ++ R + + +
Sbjct: 410 YTLASLRNQVALVSQNVHLFND------TVANNIAYARTEEYSREQIEEAARMAYAMDFI 463
Query: 987 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
++ +++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 464 NKM----DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 1008 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1062 CTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090
H ++ +A D + + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 932
LN ++ + G AL+G SG+GK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 933 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 988
PK + F QN P +T+Y+++ F LR +P + + + + EV +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAK 119
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 1046
++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 120 MLHIDKL---LNRYP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE--- 171
Query: 1047 MRT 1049
+R
Sbjct: 172 VRA 174
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 63/195 (32%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +++ IK G LLGP SGK+TLL +AG PT SG + ++ D+ E P+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
R + Q H MTV + +AF + P
Sbjct: 74 DRNVGLVFQNWALYPH------MTVYKNIAFPLELRKA--------------------PR 107
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI----RGISGGQKKRVTT 334
+ID ++ +A K+L + D+++ +SGGQ++RV
Sbjct: 108 EEIDKKVREVA--------------KMLHI---------DKLLNRYPWQLSGGQQQRVAI 144
Query: 335 GEMMVGPALALFMDE 349
+V L +DE
Sbjct: 145 ARALVKEPEVLLLDE 159
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQE---TFARISGYCEQ 948
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008
+ P +T+YE++ F ++ P+ + + R + EL+++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QL 142
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1049
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 44/188 (23%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 932
K+ ++GVS + G AL+G SG GKTT + +LAG T G I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDI 70
Query: 933 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 988
PK +E F QN P +T++E++ F R + + E R + E+
Sbjct: 71 PPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIAR 119
Query: 989 LVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 1041
+ ++ L Q LS Q++R+ +A LV P ++ DEP S LDA R
Sbjct: 120 KLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 1042 AAAIVMRT 1049
MR
Sbjct: 170 MI---MRA 174
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1073
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1074 AFDELFLMKRGGQEIYVGPLG 1094
A D + I +
Sbjct: 128 AADHV---------IRISLEN 139
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1156 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.89 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.88 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.86 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.84 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.83 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.83 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.81 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.81 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.79 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.79 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.77 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.76 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.75 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.75 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.75 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.74 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.74 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.74 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.72 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.72 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.72 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.71 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.7 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.68 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.67 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.66 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.66 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.65 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.65 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.64 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.64 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.62 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.62 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.62 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.61 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.61 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.61 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.59 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.58 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.57 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.56 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.55 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.55 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.55 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.54 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.53 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.53 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.52 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.52 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.52 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.51 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.51 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.5 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.5 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.49 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.49 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.49 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.48 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.47 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.47 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.47 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.46 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.46 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.46 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.45 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.45 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.42 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.42 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.41 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.41 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.4 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.39 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.38 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.37 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.33 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.33 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.32 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.31 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.3 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.3 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.3 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.29 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.29 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.29 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.28 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.28 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.27 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.25 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.25 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.25 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.24 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.23 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.22 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.21 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.21 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.21 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.21 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.2 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.18 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.16 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.16 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.16 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.14 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.13 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.13 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.13 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.12 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.11 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.1 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.09 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.09 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.08 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.08 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.07 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.07 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.06 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.04 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.01 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.0 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.0 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.98 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.97 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.97 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.97 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.96 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.96 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.95 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.94 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.92 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.89 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.88 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.87 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.85 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.84 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.83 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.8 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.79 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.78 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.77 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.72 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.71 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.7 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.67 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.65 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.65 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.64 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.64 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.61 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.6 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.59 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.59 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.59 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.58 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.56 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.54 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.52 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.49 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.48 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.47 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.46 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.44 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.42 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.38 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.38 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.36 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.35 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.35 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.32 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.32 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.31 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.31 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.3 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.28 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.26 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.24 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.24 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.22 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.18 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.15 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.05 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.05 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.05 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.01 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.99 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.97 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.93 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.93 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.91 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.9 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.89 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.88 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.87 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.86 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.84 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.82 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.76 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.74 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.72 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.7 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.64 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.63 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.62 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.62 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.61 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.59 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.57 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.53 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.5 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.5 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.49 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.49 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.48 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.48 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.47 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.43 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.41 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.38 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.38 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.34 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.32 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.32 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.31 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.31 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.3 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.3 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.29 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.25 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.25 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.24 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.24 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.22 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.21 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.21 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.2 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.18 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.15 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.11 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.07 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.04 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.04 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.0 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.98 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.97 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.96 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.96 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.95 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.95 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.91 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.87 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.85 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.79 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.79 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.73 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.73 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.7 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.69 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.67 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.66 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.65 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.63 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.6 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.59 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.55 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.54 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.54 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.53 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.53 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.52 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.46 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.45 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.44 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.43 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.41 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.39 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.39 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.37 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.37 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.34 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.32 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.3 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.29 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.21 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.21 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.18 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.18 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.14 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.12 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.08 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.05 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.05 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.03 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.0 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.0 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.99 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.97 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.96 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.93 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.9 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.88 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.87 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.87 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.87 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.85 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.85 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.82 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.79 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.78 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.78 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.75 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.71 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.71 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.7 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.63 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.61 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.6 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.58 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.57 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.54 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.51 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.49 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.44 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.43 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.43 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.42 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.39 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.38 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.34 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.28 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.27 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.26 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.25 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.2 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.04 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.03 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.02 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.96 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.9 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.88 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.86 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.78 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.76 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.75 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.75 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.72 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.7 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.68 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.68 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.68 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.65 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.64 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.61 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.59 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.59 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.57 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.55 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.54 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.51 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.49 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.49 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.48 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.45 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.34 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.33 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.32 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.27 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.17 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.15 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.15 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.13 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.12 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.12 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.1 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.09 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.07 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.06 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.02 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 93.97 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-76 Score=780.98 Aligned_cols=216 Identities=26% Similarity=0.377 Sum_probs=182.8
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
.+.++|+||+|+|+.. ++.++|+||||+|+|||++||+||||||||||+++|.|... +.+|+|.|||.
T Consensus 1074 ~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGS 1141 (1321)
T ss_dssp CCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTE
T ss_pred CCeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCE
Confidence 4579999999999642 12458999999999999999999999999999999999876 56899999999
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~ 1002 (1156)
+++. ..+++.++||||++.++. -|++|||.|+. .+.+.+ ++.++++++..++.+. .|+.+|.
T Consensus 1142 di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGD 1213 (1321)
T ss_dssp ETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETT
T ss_pred EhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC---CCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecC
Confidence 8764 457788999999999886 59999998752 112222 3457888998887654 4556665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
.| .+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|||+++|+++. ...||+|++|+
T Consensus 1214 ~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld 1289 (1321)
T 4f4c_A 1214 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS 1289 (1321)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEES
T ss_pred CC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEE
Confidence 43 5799999999999999999999999999999999999999999999875 58999999999874 57899999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 1290 ~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1290 N-GTIIEKGTH 1299 (1321)
T ss_dssp S-SSEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999984
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-71 Score=731.01 Aligned_cols=216 Identities=25% Similarity=0.357 Sum_probs=176.1
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++||++.|+..+ +..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 1028 ~g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSS
T ss_pred CCcEEEEEEEEECCCCC----------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCE
Confidence 35699999999986321 2358999999999999999999999999999999999876 56899999999
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~ 1002 (1156)
++.. ...++.+|||||++.+++ .||+||+.++... ...+. +.++++++..++.+. .|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCH----HHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 8754 345677999999997764 7999999875321 11222 335556666665443 3445555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. +..|||||||||+|||||+++|+||+|||||||||+.+++.|++.|++. .+|+|||+++|+++. + ..||++++|+
T Consensus 1168 ~-G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 K-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred C-CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 4 4579999999999999999999999999999999999999999999886 459999999999974 4 6699999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 1244 ~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1244 N-GKVKEHGTH 1253 (1284)
T ss_dssp T-BEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999984
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=558.98 Aligned_cols=201 Identities=23% Similarity=0.291 Sum_probs=166.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE-----
Confidence 477888876653 1 25899999999999999999999999999999999876 45687765
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.+.+||++|+....+.+||.|++.+...... ...+.++++++.+++.+..++.+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2358999999887788999998865311110 11345788999999988887764 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1092 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~-Gg~~~~~g~ 1092 (1156)
||+||+||+.+|+||||||||+|||+.++..++++|++++ +.|.|||+++||+. .+...||++++|+. .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999986 47788999999973 266777887
Q ss_pred CC
Q 001108 1093 LG 1094 (1156)
Q Consensus 1093 ~~ 1094 (1156)
..
T Consensus 558 p~ 559 (607)
T 3bk7_A 558 PM 559 (607)
T ss_dssp CE
T ss_pred HH
Confidence 63
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=553.73 Aligned_cols=201 Identities=24% Similarity=0.290 Sum_probs=165.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|... +..|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 477888876653 1 36899999999999999999999999999999999865 45687764
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
...+||++|+....+.+||.|++......... ..+.++++++.+++.+..++.+ ..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 23589999998877889999987653111110 1245778899999987777664 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1092 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~-Gg~~~~~g~ 1092 (1156)
||+||++|+.+|++|||||||+|||+.++..|+++|++++ +.|.|||++|||++ ++...||++++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9999999999999999999999999999999999999986 45999999999987 47789999999984 267778888
Q ss_pred CC
Q 001108 1093 LG 1094 (1156)
Q Consensus 1093 ~~ 1094 (1156)
..
T Consensus 488 ~~ 489 (538)
T 1yqt_A 488 PM 489 (538)
T ss_dssp CE
T ss_pred HH
Confidence 63
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=561.87 Aligned_cols=183 Identities=22% Similarity=0.282 Sum_probs=147.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCC-CCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV~ 244 (1156)
.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. .+++.+||.
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~ 514 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVL 514 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBHH
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcHH
Confidence 59999999999999999999999999999999995 222 3333211 12478999974 678899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccccccccCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRG 323 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~ 323 (1156)
|++.+ ...+ . ...++.+++.+||+ +..+..++ .
T Consensus 515 e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~ 548 (986)
T 2iw3_A 515 DFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS-----A 548 (986)
T ss_dssp HHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----G
T ss_pred HHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----c
Confidence 99975 1111 0 01356678899995 55665554 5
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ . +++||.++|+..++.++||+|++|.+|++
T Consensus 549 LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 999999999999999999999999999999999999999999986 3 44556688999999999999999999999
Q ss_pred E-EEcChhHHH
Q 001108 404 V-YQGPRELVL 413 (1156)
Q Consensus 404 v-~~G~~~~~~ 413 (1156)
+ +.|+++++.
T Consensus 624 v~~~G~~~e~~ 634 (986)
T 2iw3_A 624 RKYKGNFTEFV 634 (986)
T ss_dssp EEEESCHHHHH
T ss_pred ecCCCCHHHHH
Confidence 6 789887653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=541.95 Aligned_cols=215 Identities=20% Similarity=0.226 Sum_probs=168.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+++++++..+. + ..|+++|++|++||++||+||||||||||+++|+|... +.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe--
Confidence 466777776553 1 35788899999999999999999999999999999876 45799987652
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.++|++|+......+||+|++.+..... .. . ....++++++.++|.+..++.+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDA--LS-T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSST--TC-T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------eeEeechhcccccCCCHHHHHHHhhhhc--cc-h---hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 4799999877777899999998742111 00 1 1234678899999988887764 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEecC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGP 1092 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~G-g~~~~~g~ 1092 (1156)
||+|||||+.+|+||||||||+|||+.++..|+++|+++++ .|.|||++|||++ ++...||++++|+.+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5999999999987 477889999999842 34444554
Q ss_pred CCCcchhHHHHHHh
Q 001108 1093 LGRHSCHLISYFEA 1106 (1156)
Q Consensus 1093 ~~~~~~~~~~~f~~ 1106 (1156)
...-...+..|+..
T Consensus 472 ~~~~~~~~~~~~~~ 485 (538)
T 3ozx_A 472 PVTLKTGMNEFLRE 485 (538)
T ss_dssp CEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 42222233444443
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=551.38 Aligned_cols=213 Identities=23% Similarity=0.288 Sum_probs=135.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCC----ceeEEEEcCccC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTLK----VSGTVTYNGHDM 219 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~nG~~~ 219 (1156)
.++|+|||++|++|++++|+||||||||||| +++.|...|+.. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 888888777521 256777777654
Q ss_pred CCcCccceEEEEcCCCC-------------------CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCC
Q 001108 220 DEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280 (1156)
Q Consensus 220 ~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 280 (1156)
... +++.++||+|... .++.+||+||+.+.......... .+..+.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~----~~~~~~----------- 174 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKE----AQIARL----------- 174 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhh----hHHHHH-----------
Confidence 332 2345566665432 24678999999874322100000 000000
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHHHHcCCccc-ccccccccccCCCChhHHHHHHHHHHHhcCCc--cceeecCCCCCCHH
Q 001108 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSS 357 (1156)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~--vllLDEptsgLD~~ 357 (1156)
...+.... -.+++.+||.+. .|..+ ..|||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 175 ----------~~~~~~~~-~~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 175 ----------ILREIRDR-LGFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp --------------CHHH-HHHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ----------HHHHHHHH-HHHHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00000111 235888999764 45544 4699999999999999999988 99999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE------cCCeEEEEcChhHH
Q 001108 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELV 412 (1156)
Q Consensus 358 ~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~ 412 (1156)
++.++++.|+++.. . +.+||.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 239 ~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 239 DNDRLIATLKSMRD-L-GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GHHHHHHHHHHHHH-T-TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 99999999999854 3 45566688887754 569999999 89999999998765
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-54 Score=531.38 Aligned_cols=188 Identities=19% Similarity=0.183 Sum_probs=154.7
Q ss_pred EEeeeeeEEEeCC-----eEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCC
Q 001108 882 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 956 (1156)
Q Consensus 882 ~~L~~vs~~i~~G-----e~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~ 956 (1156)
.+++++||++++| |++||+||||||||||+++|+|... +.+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------cc----CCcEEEecccccccCCc
Confidence 4788999999888 7899999999999999999999876 335541 11 23589999987766678
Q ss_pred CHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001108 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1156)
Q Consensus 957 Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs 1036 (1156)
||+|++... .+. ... ....++++++.++|.+..+..+ ..|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 221 111 1245678999999998888774 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEecCCC
Q 001108 1037 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPLG 1094 (1156)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G-g~~~~~g~~~ 1094 (1156)
|||+.++..++++|+++. +.|.|||++|||++ ++...|||+++|+.+ |+++..|++.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChH
Confidence 999999999999999986 45999999999987 477889999999852 7888888864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=397.63 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=190.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+.. .+...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 58999999988632 123579999999999999999999999999999999999876 5689999999886
Q ss_pred Chh------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~~~------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
... ..++.+|||+|++.+++.+||+||+.|+...+. .+.++.+++++++++.++|.+..++.+ .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 235679999999999999999999999876542 345667788999999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||+|||||+.+|+||||||||||||+.++..|+++|+++.+ .|+|||++||+++ .+.+.||++++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999975 4999999999987 47788999999986 799
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999974
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=375.63 Aligned_cols=219 Identities=23% Similarity=0.344 Sum_probs=184.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+... ....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~~---------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCC---------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 57899998885211 12469999999999999999999999999999999999876 56899999998764
Q ss_pred hhc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-ccccCCCCCCC
Q 001108 936 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSG 1007 (1156)
Q Consensus 936 ~~~-------~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~ 1007 (1156)
... .++.+||++|++.+++.+||+||+.++...+.......++..+.+.++++.++|.+.. +.. +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 311 1345999999999999999999999986654322344556677889999999998743 555 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ +.+.||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4588999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..++.
T Consensus 223 i~~~~~~ 229 (235)
T 3tif_A 223 VEREEKL 229 (235)
T ss_dssp EEEEEEC
T ss_pred EEEEcCh
Confidence 8888765
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=392.27 Aligned_cols=223 Identities=22% Similarity=0.325 Sum_probs=191.9
Q ss_pred eEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 001108 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1156)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1156)
-++++||++.+.. ++....+|+|||++|++|++++|+|||||||||||++
T Consensus 24 mi~v~~ls~~y~~------------------------------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~ 73 (366)
T 3tui_C 24 MIKLSNITKVFHQ------------------------------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC 73 (366)
T ss_dssp CEEEEEEEEEEEC------------------------------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHH
T ss_pred eEEEEeEEEEeCC------------------------------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHH
Confidence 4899999998842 1133569999999999999999999999999999999
Q ss_pred HhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHH
Q 001108 198 LAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (1156)
Q Consensus 198 L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 271 (1156)
|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+++.+||+||+.|+.+..+...
T Consensus 74 i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~------------- 137 (366)
T 3tui_C 74 VNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK------------- 137 (366)
T ss_dssp HHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCH-------------
T ss_pred HhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCH-------------
Confidence 99999998 9999999999876542 3579999999999999999999999876543211
Q ss_pred hcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCC
Q 001108 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (1156)
Q Consensus 272 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEpt 351 (1156)
.+...+++++|+.+||.+.++..+ ..|||||||||+|||||+.+|++|||||||
T Consensus 138 ---------------------~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPT 191 (366)
T 3tui_C 138 ---------------------DEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQAT 191 (366)
T ss_dssp ---------------------HHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred ---------------------HHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 112235678899999998777655 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001108 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 352 sgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1156)
||||+.++..|++.|+++.+.. +.+|+.++|+..++.++||+|++|++|++++.|+++++.
T Consensus 192 s~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 192 SALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999986543 455666889999999999999999999999999999875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=382.95 Aligned_cols=215 Identities=25% Similarity=0.384 Sum_probs=185.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 488999999884 22459999999999999999999999999999999999876 5689999999887
Q ss_pred C--h---hcccceEEEeccCCC-CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 K--Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~--~---~~~~~~~gyv~q~~~-~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
. . ..+++.+|||+|++. .+..+||+||+.|+...+ ..+.++.+++++++++.++|.++.+..+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 2 234567999999863 344789999999987543 2345666778999999999998888774 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||+|||||+.+|+||||||||+|||+.++..++++|+++. ++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 47788999999986 799
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
++.|+.
T Consensus 223 ~~~g~~ 228 (275)
T 3gfo_A 223 ILQGNP 228 (275)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999985
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=394.18 Aligned_cols=214 Identities=25% Similarity=0.374 Sum_probs=190.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|. +..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 378899998873 3579999999999999999999999999999999999877 5689999999886
Q ss_pred Chh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
... ..++.+|||+|++.++|.+||+||+.|+...+. .+.++.+++++++++.++|.++.++.+ .+||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHH
Confidence 532 234679999999999999999999999876652 355667788999999999999888774 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|+||||||||||||+..+..+++.|+++.++ |.|||++|||++ ++..+||++++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999755 999999999986 58889999999986 79999997
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 218 ~ 218 (381)
T 3rlf_A 218 P 218 (381)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-42 Score=370.13 Aligned_cols=212 Identities=22% Similarity=0.280 Sum_probs=182.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378899998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Chh------cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 935 KQE------TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~------~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
... .+ ++.+||++|++.+++.+||+||+.|+...+. ...++.++.++++++.++|.+..+..+ .+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 421 12 2569999999999999999999998765432 233445567899999999998877764 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++. + +.||++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999998779999999999753 4 88999999986 688
Q ss_pred EEecC
Q 001108 1088 IYVGP 1092 (1156)
Q Consensus 1088 ~~~g~ 1092 (1156)
++.|+
T Consensus 218 ~~~g~ 222 (224)
T 2pcj_A 218 VGEIT 222 (224)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88875
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=376.87 Aligned_cols=214 Identities=25% Similarity=0.348 Sum_probs=184.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 388999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred C--h---hcccceEEEeccCCCCCCCCCHHHHHHHHH-HhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 K--Q---ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~--~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
. . ..+++.+|||+|++.+++.+||+||+.|+. ..+ ....++.++.++++++.++|.+..++.+ .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123567999999999999999999999864 322 1233445667899999999998877764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 46778999999986 6888
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=392.80 Aligned_cols=214 Identities=25% Similarity=0.401 Sum_probs=187.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|. +..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378899998873 3579999999999999999999999999999999999877 5689999999875
Q ss_pred ----Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 935 ----KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ----~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
.. ...++.+|||+|++.++|.+||+||+.|+...+. ...++.+++++++++.++|.++.++.+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 2345679999999999999999999999765432 234556778999999999999888874 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|.|||++|||++ ++..+||++++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887764 56999999999986 58889999999986 7999
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
..|+.
T Consensus 219 ~~g~~ 223 (359)
T 3fvq_A 219 QTASP 223 (359)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 99985
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=377.27 Aligned_cols=214 Identities=20% Similarity=0.254 Sum_probs=184.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Ch----------------hcccceEEEeccCCCCCCCCCHHHHHHHHH-HhhCCCCCChHHHHHHHHHHHHHcCCCcc-c
Q 001108 935 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPL-R 996 (1156)
Q Consensus 935 ~~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~ 996 (1156)
.. ..+++.+|||+|++.+++.+||+||+.|+. ..+ ..+.++.++.++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123457999999999999999999999864 322 22334456678999999999887 7
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 997 ~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
++.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||
T Consensus 148 ~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 7664 469999999999999999999999999999999999999999999999877999999999986 4677899
Q ss_pred eEEEEecCcEEEEecCC
Q 001108 1077 ELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1077 ~v~~l~~Gg~~~~~g~~ 1093 (1156)
++++|++ |+++..|+.
T Consensus 222 ~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 222 HVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEEET-TEEEEEECH
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999986 689988874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=390.01 Aligned_cols=207 Identities=24% Similarity=0.355 Sum_probs=181.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1156)
..+|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999876554 3679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+|||.|+.+..+... .+.+.+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 999999876543211 112235678899999998777554 46
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998865434 5556689999999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998754
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=388.25 Aligned_cols=207 Identities=23% Similarity=0.366 Sum_probs=178.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccC----CCcCc-cceEEEEcCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DEFVP-QRTAAYISQHDNHIG 239 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~----~~~~~-~~~~~yv~Q~d~~~~ 239 (1156)
..+|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..+++
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 35999999999999999999999999999999999999998 99999999987 22222 467999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.|+.+.++... .+...+++++++.+||.+..|..+
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~--- 136 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYP--- 136 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCG---
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCCh---
Confidence 9999999999875543211 011235678899999998777655
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. ++++|.++|+..++..+||+|++|+
T Consensus 137 --~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 137 --HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 4699999999999999999999999999999999999999999888776543 5566668999999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998753
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=424.65 Aligned_cols=196 Identities=26% Similarity=0.387 Sum_probs=146.0
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHH---------hhhcCCCC--C--CeEE------EEEEEcCccCChhc-----
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYIT------GNITISGYPKKQET----- 938 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl---------~~L~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 938 (1156)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + .... +-+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 48999999999999999999999999997 33433211 1 1222 23555554431100
Q ss_pred ---------------------------------------ccceEEEeccCCCCCC-------------------------
Q 001108 939 ---------------------------------------FARISGYCEQNDIHSP------------------------- 954 (1156)
Q Consensus 939 ---------------------------------------~~~~~gyv~q~~~~~~------------------------- 954 (1156)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777666554
Q ss_pred -------CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-
Q 001108 955 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 1026 (1156)
Q Consensus 955 -------~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p- 1026 (1156)
.+||.|++.|.... .....+.++|+.++|.... .+.+ +..|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 36788888775321 1234567889999996532 2222 3579999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1027 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1027 --~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
+||||||||+|||+.+...|++.|++++++|.|||+++|+++ ....||++++|. +||++++.|+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999988999999999975 457799999994 57899999985
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=373.22 Aligned_cols=214 Identities=23% Similarity=0.320 Sum_probs=185.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|. ++.+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 488999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Ch--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
.. ...++.+||++|++.+++.+||+||+.|....+. ...++.++.++++++.++|.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998765442 233344567889999999998887764 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986 36667999999986 68888886
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=375.49 Aligned_cols=217 Identities=25% Similarity=0.286 Sum_probs=184.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 478999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Chh----cccceEEEeccCCCCCCCCCHHHHHHHHHHh-hCCC---------CCChHHHHHHHHHHHHHcCCCccccccc
Q 001108 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSP---------EVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1156)
Q Consensus 935 ~~~----~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 1000 (1156)
... ..++.+||++|++.+++.+||+||+.|+... +... ....++.++.++++++.++|.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345699999999888899999999986532 1110 0122344567899999999998887764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999997 46778999999
Q ss_pred EecCcEEEEecCC
Q 001108 1081 MKRGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~~Gg~~~~~g~~ 1093 (1156)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 986 688888875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=386.28 Aligned_cols=257 Identities=21% Similarity=0.324 Sum_probs=194.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.|...+.++|++++++..++ ..+.......+.+...|+|+||++.+..
T Consensus 18 ~~~~~~~~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~vs~~y~~--------------------------- 65 (306)
T 3nh6_A 18 GSHMFIDMENMFDLLKEETE-----VKDLPGAGPLRFQKGRIEFENVHFSYAD--------------------------- 65 (306)
T ss_dssp -CCTTCCHHHHHHHHHHHHS-----CCCCTTCBCCCCSSCCEEEEEEEEESST---------------------------
T ss_pred HHHHHHHHHHHHHHHhCCcc-----ccccccccccCCCCCeEEEEEEEEEcCC---------------------------
Confidence 45566777888877654433 1111111222334567999999988621
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||.++..... ++.++||+|+
T Consensus 66 ------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~ 136 (306)
T 3nh6_A 66 ------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQD 136 (306)
T ss_dssp ------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSS
T ss_pred ------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecC
Confidence 134999999999999999999999999999999999999998 9999999999877643 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| ..||+|||.|+.... ..+...++.+. .+ ....+ ..++...+|
T Consensus 137 ~~lf-~~Tv~eNi~~~~~~~----~~~~~~~~~~~---~~------------------------l~~~i--~~lp~gl~t 182 (306)
T 3nh6_A 137 TVLF-NDTIADNIRYGRVTA----GNDEVEAAAQA---AG------------------------IHDAI--MAFPEGYRT 182 (306)
T ss_dssp CCCC-SEEHHHHHHTTSTTC----CHHHHHHHHHH---HT------------------------CHHHH--HHSTTGGGC
T ss_pred CccC-cccHHHHHHhhcccC----CHHHHHHHHHH---hC------------------------cHHHH--Hhccchhhh
Confidence 8776 569999999875321 11111111111 00 01111 135567789
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++. .++|+| .++|....+.. ||+
T Consensus 183 ~~~~~g-~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~Tvi-~itH~l~~~~~-aD~ 257 (306)
T 3nh6_A 183 QVGERG-LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--ANRTTI-VVAHRLSTVVN-ADQ 257 (306)
T ss_dssp EESTTS-BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTSEEE-EECCSHHHHHT-CSE
T ss_pred HhcCCc-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEE-EEEcChHHHHc-CCE
Confidence 998754 4699999999999999999999999999999999999999999999864 345554 57788777765 999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+|++.|+++++++
T Consensus 258 i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 258 ILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-41 Score=364.89 Aligned_cols=207 Identities=23% Similarity=0.275 Sum_probs=170.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1156)
..+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999998 9999999998876543 2359999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc-cccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA-DTMV 316 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 316 (1156)
++.+||+||+.++......+... ..+....+.++++.+||.+.. +..
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~- 142 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMS-------------------------------GEERRKRALECLKMAELEERFANHK- 142 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCC-------------------------------HHHHHHHHHHHHHHTTCCGGGTTCC-
T ss_pred CCCCcHHHHHHHHHHhhhccCCC-------------------------------HHHHHHHHHHHHHHCCCChhhhhCC-
Confidence 99999999999986543111000 001123456788999997643 544
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+ |.++|+.. +.++||+|+
T Consensus 143 ----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tv-i~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 143 ----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTV-VVVTHDIN-VARFGERII 216 (235)
T ss_dssp ----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE-EEECSCHH-HHTTSSEEE
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEE-EEEcCCHH-HHHhCCEEE
Confidence 456999999999999999999999999999999999999999999999865435554 55677776 568999999
Q ss_pred EEcCCeEEEEcChhHH
Q 001108 397 LLSDGQIVYQGPRELV 412 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1156)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=413.99 Aligned_cols=195 Identities=29% Similarity=0.363 Sum_probs=149.1
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc-C-C--------CCCC---eEEE------EEEEcCccCChhc-----
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G-R--------KTGG---YITG------NITISGYPKKQET----- 938 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g-~--------~~~~---~~~G------~i~i~g~~~~~~~----- 938 (1156)
.|+|||++|++|+++||+|+||||||||+++|. | . ...| ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 499999999999999999999999999999864 1 0 0112 2334 5888887753100
Q ss_pred -----------------ccceEEEeccCCCCC----------------------C-------------------------
Q 001108 939 -----------------FARISGYCEQNDIHS----------------------P------------------------- 954 (1156)
Q Consensus 939 -----------------~~~~~gyv~q~~~~~----------------------~------------------------- 954 (1156)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 123457887754321 1
Q ss_pred -------CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001108 955 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1026 (1156)
Q Consensus 955 -------~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p 1026 (1156)
.+||.|++.|.... .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFASI-------PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCSC-------HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhcc-------hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 35788887764211 11 223568999999986 44544 3579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1027 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1027 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.||++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 357899999995 46899998874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=367.63 Aligned_cols=213 Identities=22% Similarity=0.325 Sum_probs=181.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 478999998873 3569999999999999999999999999999999999876 5689999999876
Q ss_pred Chh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCC
Q 001108 935 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LS 1009 (1156)
... . .++.+||++|++.+++.+||+||+.|+.... ...++.++.++++++.++ |.+..++. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 431 1 2345999999999999999999999864211 122344566788999995 88777765 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999878999999999986 47788999999986 68888
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=385.29 Aligned_cols=215 Identities=24% Similarity=0.367 Sum_probs=187.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+ +++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 588999988772 12348999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ...++.+|||+|+..+++.+||+||+.|+...+. .+.++.+++++++++.++|.++.++.+ .+||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 2345679999999999999999999999876542 344556678999999999999888774 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..+||++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998754 999999999986 57789999999986 79999887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=385.23 Aligned_cols=213 Identities=26% Similarity=0.382 Sum_probs=186.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67889988773 3469999999999999999999999999999999999876 56899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.+|||+|+..+++.+||+||+.|+...+. .+.++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999999865542 234556678999999999999888774 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998654 999999999986 57789999999986 689998875
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=385.49 Aligned_cols=213 Identities=24% Similarity=0.345 Sum_probs=185.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67899988873 3579999999999999999999999999999999999876 56899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999975433 1223344567899999999999888774 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999986 57789999999986 689999875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=373.35 Aligned_cols=213 Identities=24% Similarity=0.320 Sum_probs=184.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.+. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 588999998873 3579999999999999999999999999999999999876 4589999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 1011 (1156)
.. ...++.+||++|++.+++.+||+||+.|+.... .....++.++++++.++|.+..++.+ .+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 53 234567999999999888899999999875432 11233567889999999998888764 469999
Q ss_pred HHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1012 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1012 qrqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
|||||+|||||+. +|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 47778999999986
Q ss_pred cEEEEecCCC
Q 001108 1085 GQEIYVGPLG 1094 (1156)
Q Consensus 1085 g~~~~~g~~~ 1094 (1156)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 7999999853
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=385.80 Aligned_cols=213 Identities=26% Similarity=0.340 Sum_probs=186.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 77899988873 3579999999999999999999999999999999999876 56899999998753
Q ss_pred h-------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 936 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 936 ~-------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
. ...++.+|||+|+..+++.+||+||+.|+...+. .+.++.+++++++++.++|.++.++.+ .+|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 1234679999999999999999999999876542 344556678999999999999888764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..+||++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998754 999999999986 57789999999986 799
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
+..|+.
T Consensus 219 ~~~g~~ 224 (372)
T 1g29_1 219 QQVGSP 224 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 999875
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=381.35 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=178.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++++||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVF 93 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHH
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 5999999999999999999999999999999999999998 9999999999876544 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+.. + .+...+++++++.+||++..+..+ ..|
T Consensus 94 eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 134 (359)
T 2yyz_A 94 ENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDRKP-----TQL 134 (359)
T ss_dssp HHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred HHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 9999986543210 0 011235678899999998777655 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|+++
T Consensus 135 SgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865434 45555789999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 214 ~~g~~~~l~~ 223 (359)
T 2yyz_A 214 QYGTPDEVYD 223 (359)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9999998753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=369.11 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=177.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
.++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 35999999999999999999999999999999999999998 9999999999876543 35699999998888899
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+...... .+....++.+++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999999987643210 0012346778999999887776554
Q ss_pred CCCChhHHHHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 322 RGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
.|||||||||+|||||+. +|++|||||||+|||+.++..+++.|+++.+ .++.+|+.++|+..++.++||+|
T Consensus 141 -~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp -GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHHHCSEE
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHHhCCEE
Confidence 699999999999999999 9999999999999999999999999999865 45556677899999999999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001108 396 ILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1156)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998874
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=372.13 Aligned_cols=206 Identities=25% Similarity=0.331 Sum_probs=174.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-----CccceEEEEcCCC-CCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD-NHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-----~~~~~~~yv~Q~d-~~~~ 239 (1156)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 4999999999999999999999999999999999999998 99999999987421 1246799999985 3455
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
.+||+||+.|+....+... .+...+++++++.+||.+..+..++
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 142 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPTH-- 142 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc--
Confidence 8999999999876543210 0112346778999999987776554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+..+ ++||.++|+..++.++||+|++|+
T Consensus 143 ---~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 143 ---CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG-ITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC-CEEEEEESCCSSGGGGCSEEEEEE
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999999863344 455567889999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999998754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=364.80 Aligned_cols=205 Identities=20% Similarity=0.340 Sum_probs=174.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC--CcC---ccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~--~~~---~~~~~~yv~Q~d~~~~~ 240 (1156)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++. ... .++.++||+|++.+++.
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~ 114 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTT
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCC
Confidence 4999999999999999999999999999999999999998 999999999874 111 13569999999989999
Q ss_pred CCHHHHHHHHh-hhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 001108 241 MTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1156)
+||+||+.|+. +..+... .+....++.+++.+||.+..+..++
T Consensus 115 ~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 158 (263)
T 2olj_A 115 MTVLNNITLAPMKVRKWPR----------------------------------EKAEAKAMELLDKVGLKDKAHAYPD-- 158 (263)
T ss_dssp SCHHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG--
T ss_pred CCHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCChh--
Confidence 99999999964 3322100 0012346778999999887776554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++||.++|+..++.++||+|++|+
T Consensus 159 ---~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 233 (263)
T 2olj_A 159 ---SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-E-GMTMVVVTHEMGFAREVGDRVLFMD 233 (263)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999998865 3 4556668899999999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 234 ~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 234 GGYIIEEGKPEDLFD 248 (263)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=381.06 Aligned_cols=206 Identities=27% Similarity=0.394 Sum_probs=178.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHH
Confidence 5999999999999999999999999999999999999998 9999999999866544 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+.++... .+...+++++++.+||.+..+..+ ..|
T Consensus 94 eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 134 (362)
T 2it1_A 94 KNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQL 134 (362)
T ss_dssp HHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hhC
Confidence 99999875442110 011235678899999988777554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++|+++
T Consensus 135 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEIL 213 (362)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865434 44555789999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 214 ~~g~~~~~~~ 223 (362)
T 2it1_A 214 QVGTPDEVYY 223 (362)
T ss_dssp EEECHHHHHH
T ss_pred EEcCHHHHHh
Confidence 9999998753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=358.59 Aligned_cols=199 Identities=26% Similarity=0.352 Sum_probs=168.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-------cceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 5999999999999999999999999999999999999998 9999999998865432 15699999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.|+....+... .+....++.+++.+||.+..+..++
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 139 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKPY- 139 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG-
T ss_pred CCCCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh-
Confidence 99999999999765432110 0012246778999999887776554
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+. +. +|+.++|+...+ ++||+|++|
T Consensus 140 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~-tvi~vtHd~~~~-~~~d~v~~l 212 (224)
T 2pcj_A 140 ----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GT-SIVMVTHERELA-ELTHRTLEM 212 (224)
T ss_dssp ----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC-EEEEECSCHHHH-TTSSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC-EEEEEcCCHHHH-HhCCEEEEE
Confidence 69999999999999999999999999999999999999999999988653 44 455577777776 899999999
Q ss_pred cCCeEEEEcCh
Q 001108 399 SDGQIVYQGPR 409 (1156)
Q Consensus 399 ~~G~iv~~G~~ 409 (1156)
++|++++.|++
T Consensus 213 ~~G~i~~~g~~ 223 (224)
T 2pcj_A 213 KDGKVVGEITR 223 (224)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCEEEEEeee
Confidence 99999999864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=384.99 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=180.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++.+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 78999998873 3569999999999999999999999999999999999876 56899999998764
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..+|.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999975433 2344556678999999999999888764 579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..+||++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998755 999999999986 57789999999986 689998875
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=366.51 Aligned_cols=205 Identities=23% Similarity=0.325 Sum_probs=173.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC----------cC------ccceEE
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------FV------PQRTAA 229 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~----------~~------~~~~~~ 229 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.++
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcceE
Confidence 4999999999999999999999999999999999999998 9999999998751 11 135699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 001108 230 YISQHDNHIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1156)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1156)
||+|++.+++.+||+||+.|+. ...+... .+....++.+++.+||
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L 142 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVGI 142 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTTC
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCC
Confidence 9999999999999999999864 3222100 0012346778999999
Q ss_pred ccc-ccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 309 DVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 309 ~~~-~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
.+. .+..++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .+ ++||.++|+..+
T Consensus 143 ~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g-~tvi~vtHd~~~ 215 (262)
T 1b0u_A 143 DERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGF 215 (262)
T ss_dssp CHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHHH
T ss_pred CchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHH
Confidence 887 776554 6999999999999999999999999999999999999999999998865 34 445557889999
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+..+||+|++|++|++++.|+++++..
T Consensus 216 ~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 216 ARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999988753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=380.55 Aligned_cols=206 Identities=26% Similarity=0.374 Sum_probs=177.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC------cCc-cceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------FVP-QRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~------~~~-~~~~~yv~Q~d~~~ 238 (1156)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.+|||+|+..++
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~ 93 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCccC
Confidence 5999999999999999999999999999999999999998 9999999988754 322 46799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+++||+||+.|+.+..+... .+...+++++++.+||.+..+..+
T Consensus 94 ~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-- 137 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP-- 137 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG--
T ss_pred CCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCc--
Confidence 99999999999875543210 011235678899999988777554
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
..|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|
T Consensus 138 ---~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl 213 (372)
T 1g29_1 138 ---RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAVM 213 (372)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEE
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998765434 45555789999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
++|+++..|+++++..
T Consensus 214 ~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 214 NRGVLQQVGSPDEVYD 229 (372)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred eCCEEEEeCCHHHHHh
Confidence 9999999999998753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=385.26 Aligned_cols=213 Identities=27% Similarity=0.375 Sum_probs=185.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceE--EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~--~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
++++|++++|. ++. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67899998874 123 8999999999999999999999999999999999876 568999999987
Q ss_pred CCh------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 934 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 934 ~~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
+.. ...++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.+ .+
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 234567999999999999999999999976443 2344556678999999999999888774 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998654 999999999986 57889999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|+.
T Consensus 219 i~~~g~~ 225 (353)
T 1oxx_K 219 LVQVGKP 225 (353)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9998875
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=378.56 Aligned_cols=206 Identities=26% Similarity=0.393 Sum_probs=178.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..+++.+||+
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999999865443 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+... .+...+++++++.+||.+..+..+ ..|
T Consensus 106 eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~L 146 (355)
T 1z47_A 106 DNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFP-----HEL 146 (355)
T ss_dssp HHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----ccC
Confidence 99999875542210 011235678899999998777554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++|+++
T Consensus 147 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865434 45555889999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 226 ~~g~~~~l~~ 235 (355)
T 1z47_A 226 QFGTPEEVYE 235 (355)
T ss_dssp EEECHHHHHH
T ss_pred EEcCHHHHHh
Confidence 9999998753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=380.55 Aligned_cols=206 Identities=25% Similarity=0.353 Sum_probs=171.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++++||+
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 101 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 101 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 4999999999999999999999999999999999999998 9999999999876544 46799999999999999999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.+..+... .+...+++++++.+||.+..+..+ ..|
T Consensus 102 eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 142 (372)
T 1v43_A 102 ENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQL 142 (372)
T ss_dssp HHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TTC
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-----hhC
Confidence 99999864432110 011235678899999998777554 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++|+++
T Consensus 143 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865434 45555789999999999999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 222 ~~g~~~~l~~ 231 (372)
T 1v43_A 222 QIGSPTEVYL 231 (372)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9999998743
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=377.49 Aligned_cols=201 Identities=24% Similarity=0.362 Sum_probs=176.2
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 899999999999999999999999999999999999998 9999999998865433 467999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.|+.+..+... . .+++++++.+||++..|..+ ..||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999865432110 0 23567899999998777655 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+|||||+.+|++|||||||||||+.++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999886543 4455568899999999999999999999999
Q ss_pred EcChhHHH
Q 001108 406 QGPRELVL 413 (1156)
Q Consensus 406 ~G~~~~~~ 413 (1156)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999874
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=411.70 Aligned_cols=106 Identities=25% Similarity=0.360 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001108 981 MFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056 (1156)
Q Consensus 981 ~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~---p~illLDEPTsgLD~~~~~~i~~~l~~~~~~ 1056 (1156)
+.+.++++.++|... .+.. +..|||||||||+||++|+.+ |+||||||||+|||+.+...|+++|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 457889999999864 3443 357999999999999999996 6999999999999999999999999999888
Q ss_pred CCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1057 GRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1057 g~tvi~~~H~~~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
|.|||+++|+++. + +.||++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~~-i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQV-V-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHHH-H-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHHH-H-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9999999999753 4 8899999995 46899998874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=361.55 Aligned_cols=205 Identities=25% Similarity=0.322 Sum_probs=174.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 105 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875421 23579999999989999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|+....+... .+....++.+++.+||.+..+..++ .
T Consensus 106 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 146 (256)
T 1vpl_A 106 IEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS-----T 146 (256)
T ss_dssp HHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----G
T ss_pred HHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-----h
Confidence 999998754332110 0011245678999999987776554 6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|+..++..+||+|++|++|++
T Consensus 147 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNGTI 224 (256)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3 45555678888999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
++.|+++++.+
T Consensus 225 ~~~g~~~~~~~ 235 (256)
T 1vpl_A 225 VETGTVEELKE 235 (256)
T ss_dssp EEEEEHHHHHH
T ss_pred EEecCHHHHHH
Confidence 99999988754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=378.82 Aligned_cols=205 Identities=20% Similarity=0.288 Sum_probs=177.1
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC-----cC-ccceEEEEcCCCCCCCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE-----FV-PQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 240 (1156)
+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+|||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 899999999999999999999999999999999999998 9999999988754 22 24689999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+||+||+.|+.+..+... .+...+++++++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCCh----
Confidence 999999999875432110 011235678899999998777655
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ +++|.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998865434 4455578999999999999999999
Q ss_pred CeEEEEcChhHHHH
Q 001108 401 GQIVYQGPRELVLE 414 (1156)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1156)
|+++..|+++++..
T Consensus 217 G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 217 GKLVQVGKPEDLYD 230 (353)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998753
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=362.71 Aligned_cols=218 Identities=26% Similarity=0.286 Sum_probs=175.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+ ++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 78899998873 35699999999999999999999999999999999997211267899999998764
Q ss_pred hh---cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCC-CcccccccCCCCCCC-CC
Q 001108 936 QE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLVGLPGVSG-LS 1009 (1156)
Q Consensus 936 ~~---~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l-~~~~~~~~~~~~~~~-LS 1009 (1156)
.. .. ++.++|++|++.+++.+||+||+.+.............+..+.++++++.++| .+..++.+ .. ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 12 33589999999999999999999986532111112233445678899999999 47777663 45 99
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++. +... ||++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999997679999999999873 5555 599999986 6899
Q ss_pred EecCC
Q 001108 1089 YVGPL 1093 (1156)
Q Consensus 1089 ~~g~~ 1093 (1156)
+.|+.
T Consensus 224 ~~g~~ 228 (250)
T 2d2e_A 224 ATGGP 228 (250)
T ss_dssp EEESH
T ss_pred EEeCH
Confidence 88874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=379.48 Aligned_cols=209 Identities=21% Similarity=0.287 Sum_probs=182.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|. ++ +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 56788887763 34 8999999999999999999999999999999999876 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ...++.+|||+|+..+++.+||+||+.|+...+.. ... ++++++++.++|.++.++.+ .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998765432 111 56889999999999888774 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|||||||||||+.++..+++.|+++.+ .|.|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999986 57789999999986 688888874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=357.62 Aligned_cols=203 Identities=23% Similarity=0.336 Sum_probs=170.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l 96 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998865432 24599999999899999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcC-Ccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDEM 320 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~~ 320 (1156)
||+||+.|+.... .. . + +....++.+++.++ |.+..+..+
T Consensus 97 tv~enl~~~~~~~-~~-~-~--------------------------------~~~~~~~~~l~~~~~l~~~~~~~~---- 137 (240)
T 1ji0_A 97 TVYENLMMGAYNR-KD-K-E--------------------------------GIKRDLEWIFSLFPRLKERLKQLG---- 137 (240)
T ss_dssp BHHHHHHGGGTTC-CC-S-S--------------------------------HHHHHHHHHHHHCHHHHTTTTSBS----
T ss_pred cHHHHHHHhhhcC-CC-H-H--------------------------------HHHHHHHHHHHHcccHhhHhcCCh----
Confidence 9999999864211 00 0 0 01123456788884 876666544
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .+.| |+.++|+..++.++||+|++|++
T Consensus 138 -~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-vi~vtHd~~~~~~~~d~v~~l~~ 214 (240)
T 1ji0_A 138 -GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTT-ILLVEQNALGALKVAHYGYVLET 214 (240)
T ss_dssp -SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCC-EEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCE-EEEEecCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998764 4444 55578888899999999999999
Q ss_pred CeEEEEcChhHHH
Q 001108 401 GQIVYQGPRELVL 413 (1156)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1156)
|++++.|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 215 GQIVLEGKASELL 227 (240)
T ss_dssp TEEEEEEEHHHHH
T ss_pred CEEEEEcCHHHHh
Confidence 9999999988764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=363.65 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=173.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998865432 34699999998889999
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
||+||+.|+......+. ...... ..... ...+....++++++.+||++..+..++
T Consensus 98 tv~enl~~~~~~~~~~~----~~~~~~----~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 152 (257)
T 1g6h_A 98 TVLENLLIGEICPGESP----LNSLFY----KKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG---- 152 (257)
T ss_dssp BHHHHHHGGGTSTTSCH----HHHHHH----CSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG----
T ss_pred cHHHHHHHHHhhhccCc----cccccc----ccccC-------------CHHHHHHHHHHHHHHcCCchhhCCCch----
Confidence 99999998753200000 000000 00000 000112346778999999887776654
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +++||.++|+..++.++||+|++|++|
T Consensus 153 -~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~~G 229 (257)
T 1g6h_A 153 -ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFNG 229 (257)
T ss_dssp -GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999998864 3 445556788888999999999999999
Q ss_pred eEEEEcChhH
Q 001108 402 QIVYQGPREL 411 (1156)
Q Consensus 402 ~iv~~G~~~~ 411 (1156)
++++.|++++
T Consensus 230 ~i~~~g~~~~ 239 (257)
T 1g6h_A 230 QIIAEGRGEE 239 (257)
T ss_dssp EEEEEEESHH
T ss_pred EEEEEeCHHH
Confidence 9999999888
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=366.66 Aligned_cols=217 Identities=22% Similarity=0.325 Sum_probs=180.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+... ...+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 67889998874100 001579999999999999999999999999999999999876 56899999998875
Q ss_pred hhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHH
Q 001108 936 QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~~~~~~~~LSgGq 1012 (1156)
...+++.+||++|++ ..++.+||+||+.|+.... ...++.+++++++++.++|. +..++.+ .+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 434456799999995 4566799999999864322 11112245678999999998 8777764 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999987 36678999999986 68888876
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=369.11 Aligned_cols=220 Identities=22% Similarity=0.349 Sum_probs=180.3
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
....++++|+++.|+ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 18 ~~~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g 82 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFG 82 (279)
T ss_dssp -CEEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECC
Confidence 334589999998873 3569999999999999999999999999999999999876 5689999999
Q ss_pred ccCC--h---hcccceEEEeccCCCCC--CCCCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCC
Q 001108 932 YPKK--Q---ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003 (1156)
Q Consensus 932 ~~~~--~---~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~ 1003 (1156)
.++. . ..+++.+||++|++.+. +.+||+||+.|+...... .....++.++.++++++.++|.+..++.+
T Consensus 83 ~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 159 (279)
T 2ihy_A 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI--- 159 (279)
T ss_dssp BCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG---
T ss_pred EEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh---
Confidence 8764 2 23456799999987543 356999999875321100 00112334567889999999988887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCcHHHHHhcCeEEEE
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~i~~~~d~v~~l 1081 (1156)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|| |++||+++ ++.+.||++++|
T Consensus 160 --~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l 236 (279)
T 2ihy_A 160 --GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLL 236 (279)
T ss_dssp --GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999997669999 99999987 466789999999
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
++ |++++.|+.
T Consensus 237 ~~-G~i~~~g~~ 247 (279)
T 2ihy_A 237 KD-GQSIQQGAV 247 (279)
T ss_dssp ET-TEEEEEEEH
T ss_pred EC-CEEEEECCH
Confidence 86 689988874
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=358.92 Aligned_cols=208 Identities=20% Similarity=0.303 Sum_probs=177.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+ + +|+||||+|++ |++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788888873 1 49999999999 9999999999999999999999876 56899999998764
Q ss_pred h-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ...++.+||++|++.+++.+||+||+.|+...+ .....++.++++++.++|.+..++.+ .+|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 223467999999999999999999999864322 11222567889999999998877764 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999986 47788999999986 688888874
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=356.42 Aligned_cols=202 Identities=22% Similarity=0.309 Sum_probs=172.3
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+|+|||+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999998 999999999875432 2467999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.|+....+. .. ....++.+++.+||.+..+..++ .||
T Consensus 90 nl~~~~~~~~~-------~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER-------VE-----------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLS 128 (240)
T ss_dssp HHHTTCTTSCH-------HH-----------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSC
T ss_pred HHHHHHHHcCC-------ch-----------------------------HHHHHHHHHHHcCCHHHhcCChh-----hCC
Confidence 99987533210 00 01245678899999887776554 699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+ +.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tv-i~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI-LHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE-EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998765334554 447888889999999999999999999
Q ss_pred EcChhHHHH
Q 001108 406 QGPRELVLE 414 (1156)
Q Consensus 406 ~G~~~~~~~ 414 (1156)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=358.74 Aligned_cols=220 Identities=25% Similarity=0.303 Sum_probs=180.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|. ++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 589999998873 3579999999999999999999999999999999999742226789999999876
Q ss_pred Ch---hcc-cceEEEeccCCCCCCCCCHHHHHHHHHH-hh---CCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001108 935 KQ---ETF-ARISGYCEQNDIHSPFVTIYESLLFSAW-LR---LSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1156)
Q Consensus 935 ~~---~~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~-lr---~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 1005 (1156)
.. ... ++.+||++|++.+++.+||.|++.+... ++ .....+.++.++.++++++.++|. ...+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 42 112 2348999999999999999999987542 21 111223344456789999999996 46665532
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-~d~v~~l~~G 1084 (1156)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++. +... ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEEC-
Confidence 2499999999999999999999999999999999999999999999987679999999999863 4444 899999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 241 G~i~~~g~~ 249 (267)
T 2zu0_C 241 GRIVKSGDF 249 (267)
T ss_dssp TEEEEEECT
T ss_pred CEEEEEcCH
Confidence 689998875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=366.45 Aligned_cols=213 Identities=24% Similarity=0.331 Sum_probs=177.0
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.+..++++||+++|+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 50 ~~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G 115 (306)
T 3nh6_A 50 QKGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDG 115 (306)
T ss_dssp SSCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECC
Confidence 345799999999984 13469999999999999999999999999999999999876 5689999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVG 1001 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~~ 1001 (1156)
.++.. ..+++.+|||+|++.+++ .||+|||.|+... .. .+.++++++.+++.+..+ ..++
T Consensus 116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~ 185 (306)
T 3nh6_A 116 QDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185 (306)
T ss_dssp EETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEES
T ss_pred EEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhc
Confidence 98754 345677999999998875 6999999986321 11 234667777777765433 3344
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
.. +..|||||||||+|||||+.+|+||||||||||||+.++..|++.|+++. +++|||+++|+++. + ..||++++|
T Consensus 186 ~~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~-~-~~aD~i~vl 261 (306)
T 3nh6_A 186 ER-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-V-VNADQILVI 261 (306)
T ss_dssp TT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHH-H-HTCSEEEEE
T ss_pred CC-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHH-H-HcCCEEEEE
Confidence 43 35799999999999999999999999999999999999999999999986 47999999999863 4 559999999
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
++ |+++..|+.
T Consensus 262 ~~-G~iv~~G~~ 272 (306)
T 3nh6_A 262 KD-GCIVERGRH 272 (306)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEEEECCH
Confidence 86 799999984
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=354.10 Aligned_cols=207 Identities=22% Similarity=0.346 Sum_probs=174.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE------
Confidence 3788999988730 2469999999999999999999999999999999999876 4689997
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.++.+||++|++.+++.+||+||+.|+....... .......++.++++++.++|.+..++.+ .+||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 2356999999999988999999999864322110 0112334567899999999998877764 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ .+...||++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999776 999999999986 46688999999987 56 88876
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 212 ~ 212 (253)
T 2nq2_C 212 T 212 (253)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=352.96 Aligned_cols=212 Identities=26% Similarity=0.421 Sum_probs=175.4
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|++++|+. +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 46899999988731 13469999999999999999999999999999999999876 468999999987
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-------~~~ 1003 (1156)
+.. ..+++.+||++|++.+++ .||+||+.|+. .... ++.++++++.+++.+..+... +.+
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC-----TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 643 234567999999998876 69999998752 1111 234677888888876655432 222
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999995 69999999999863 4 56999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 688888874
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=353.72 Aligned_cols=193 Identities=21% Similarity=0.349 Sum_probs=168.2
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
+|+||||+|++||+++|+||||||||||+++|+|... +. |+|.++|.+... ..+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 6999999999999999999999999999999999876 56 999999987632 23456799999999988899999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC-------EEEEe
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1032 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~-------illLD 1032 (1156)
||+.|+.. . ... ++.++++++.++|.+..++.+ ..||||||||++|||||+.+|+ +||||
T Consensus 92 e~l~~~~~-~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH-D---KTR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS-S---TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc-c---CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 1 111 456789999999998877764 4699999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999777999999999986 46688999999986 688888864
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=354.63 Aligned_cols=205 Identities=27% Similarity=0.396 Sum_probs=172.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCC-CCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1156)
+.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 45999999999999999999999999999999999999998 999999998875332346799999985 56778999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc--cccccccccccc
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMVGDEMI 321 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 321 (1156)
+||+.|+.... ... .+....++.+++.+||. +..+..+
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 000 00112456789999998 7777655
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +.+||.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-L-GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998765 3 445555788888888999999999999
Q ss_pred eEEEEcChhHHHH
Q 001108 402 QIVYQGPRELVLE 414 (1156)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1156)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=349.22 Aligned_cols=197 Identities=20% Similarity=0.272 Sum_probs=169.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+ + .+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 588999998873 3 69999999999999999999999999999999999876 5689999999876
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
. ..++.+||++|++.+++.+||+||+.|+...+.. . . + ++.++++++.++|.+. +.. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~--~-~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K--V-N-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C--C-C-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c--h-H-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 5 3466799999999999999999999987654321 1 1 1 3557889999999877 655 3579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
||+||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...+|+++++
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 999999999999999999999999999999999999999766899999999997 466677887755
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=359.40 Aligned_cols=214 Identities=21% Similarity=0.287 Sum_probs=172.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+.. +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 58999999887420 01358999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHH-----HHHHHHHHHHHc--CCCcccccccCCCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET-----RKMFIDEVMELV--ELNPLRQSLVGLPG 1004 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~-----~~~~v~~~l~~l--~l~~~~~~~~~~~~ 1004 (1156)
.. ..+++.+|||+|++.+++ .||+||+.|+.... ...+. ....++++++.+ ++....+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 234567999999998887 59999998853211 11011 122345667777 666665555
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.+ +|+|||++||+++ ..+.||++++|++
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999864 4999999999975 3456999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 688888874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=355.81 Aligned_cols=208 Identities=28% Similarity=0.313 Sum_probs=168.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC--CcC---ccceEEEEcCCCCCC--
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHI-- 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~--~~~---~~~~~~yv~Q~d~~~-- 238 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQ 111 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSC
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccC
Confidence 4999999999999999999999999999999999999998 999999999875 322 245799999986432
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+||+.|+..... + .+.. + ..+....++.+++.+||.+..+..++
T Consensus 112 ~~ltv~enl~~~~~~~~-~-~~~~--------------~--------------~~~~~~~~~~~l~~~gl~~~~~~~~~- 160 (279)
T 2ihy_A 112 EGERVIDVVISGAFKSI-G-VYQD--------------I--------------DDEIRNEAHQLLKLVGMSAKAQQYIG- 160 (279)
T ss_dssp TTSBHHHHHHTTC-------------------------C--------------CHHHHHHHHHHHHHTTCGGGTTSBGG-
T ss_pred CCCCHHHHHHhhhhhcc-c-cccC--------------C--------------cHHHHHHHHHHHHHcCChhHhcCChh-
Confidence 35699999998632100 0 0000 0 00112346778999999887776654
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEE-EEEecChhhHHhhcCeEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV-ISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~i-i~i~q~~~~~~~~~D~iil 397 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++... +.|+. |.++|+..++.++||+|++
T Consensus 161 ----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 161 ----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILL 235 (279)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEE
T ss_pred ----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999988654 55551 5578888899999999999
Q ss_pred EcCCeEEEEcChhHH
Q 001108 398 LSDGQIVYQGPRELV 412 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (1156)
|++|++++.|+++++
T Consensus 236 l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 236 LKDGQSIQQGAVEDI 250 (279)
T ss_dssp EETTEEEEEEEHHHH
T ss_pred EECCEEEEECCHHHH
Confidence 999999999998876
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=346.98 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=160.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
..+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 35999999999999999999999999999999999999998 9999999998865432 357999999987775 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-------cccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-------CADT 314 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~dt 314 (1156)
||+||+.|+.. . ...+ .++.+++.+|+.+ ..++
T Consensus 98 tv~enl~~~~~--~--~~~~------------------------------------~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--G--MSVE------------------------------------KVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--T--CCHH------------------------------------HHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--C--CCHH------------------------------------HHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987531 0 0000 1122334444433 2344
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+.| ||.++|+...+ ..||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~t-viivtH~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSE-EEEECSSGGGG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCE-EEEEeCCHHHH-HhCCE
Confidence 4443 356799999999999999999999999999999999999999999999873 3445 45567776666 45999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001108 395 IILLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1156)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=347.65 Aligned_cols=204 Identities=23% Similarity=0.292 Sum_probs=162.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
.+|+|||+++++|++++|+|||||||||||++|+|. ++|+ +|+|.++|.++..... ++.++||+|++.+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 599999999999999999999999999999999998 6776 9999999998865432 234899999999999
Q ss_pred CCCHHHHHHHHhhh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC-ccccccccc
Q 001108 240 EMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVG 317 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg 317 (1156)
.+||+||+.|+... .+.... ..+....++.+++.+|| .+..++.+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~- 140 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVG--------------------------------VAEFWTKVKKALELLDWDESYLSRYL- 140 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCC--------------------------------HHHHHHHHHHHHHHHTCCGGGGGSBT-
T ss_pred CCCHHHHHHHHHHhhccccCC--------------------------------HHHHHHHHHHHHHHcCCChhHhcCCc-
Confidence 99999999986521 110000 00112345678999999 46666554
Q ss_pred ccccCC-CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh-cCeE
Q 001108 318 DEMIRG-ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDI 395 (1156)
Q Consensus 318 ~~~~~~-LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~-~D~i 395 (1156)
.. |||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.. . +++||.++|+..++..+ ||+|
T Consensus 141 ----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 141 ----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDKV 214 (250)
T ss_dssp ----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSEE
T ss_pred ----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCEE
Confidence 35 999999999999999999999999999999999999999999998743 3 45556678888888887 5999
Q ss_pred EEEcCCeEEEEcChhH
Q 001108 396 ILLSDGQIVYQGPREL 411 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (1156)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-39 Score=393.61 Aligned_cols=258 Identities=23% Similarity=0.401 Sum_probs=197.6
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.+++ ..+..+....+....+++++||++.+..
T Consensus 304 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 351 (578)
T 4a82_A 304 LTQSFASMDRVFQLIDEDYD-----IKNGVGAQPIEIKQGRIDIDHVSFQYND--------------------------- 351 (578)
T ss_dssp HHHHHHHHHHHHHHHTCCCS-----SCCCTTCCCCCCCSCCEEEEEEEECSCS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----ccCCCCccccCCCCCeEEEEEEEEEcCC---------------------------
Confidence 56778888999988876654 1111111112233467999999988631
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 352 -----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 423 (578)
T 4a82_A 352 -----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQD 423 (578)
T ss_dssp -----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSS
T ss_pred -----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCC
Confidence 1234899999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++. ||+||+.|+... ...+...++++. .++ +.. ...+++..||
T Consensus 424 ~~l~~~-tv~eni~~~~~~----~~~~~~~~~~~~---~~~------------------------~~~--~~~lp~g~~t 469 (578)
T 4a82_A 424 NILFSD-TVKENILLGRPT----ATDEEVVEAAKM---ANA------------------------HDF--IMNLPQGYDT 469 (578)
T ss_dssp CCCCSS-BHHHHHGGGCSS----CCHHHHHHHHHH---TTC------------------------HHH--HHTSTTGGGC
T ss_pred CccCcc-cHHHHHhcCCCC----CCHHHHHHHHHH---hCc------------------------HHH--HHhCcchhhh
Confidence 877754 999999886421 111112222111 100 011 2357778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .|||||||||+|||||+.+|++++|||||||||+.++..+.+.|+++. .++|+|+ ++|+...+ +.||+
T Consensus 470 ~~~~~g~-~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~ 544 (578)
T 4a82_A 470 EVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLI-VAHRLSTI-THADK 544 (578)
T ss_dssp BCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEE-ECSSGGGT-TTCSE
T ss_pred hhccCCC-cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCE
Confidence 9997654 699999999999999999999999999999999999999999998763 3455544 67776665 56999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++.+
T Consensus 545 i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 545 IVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999865
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=351.13 Aligned_cols=209 Identities=22% Similarity=0.370 Sum_probs=164.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
..+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 35899999999999999999999999999999999999998 9999999998754332 357999999987776 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc--CCccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDE 319 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (1156)
||+|||.|+.... .. .+...+... ...++.+++.+ ||....+.
T Consensus 108 tv~enl~~~~~~~--~~-~~~~~~~~~---------------------------~~~~~~~l~~l~~gl~~~~~~----- 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-MEEITAVAM---------------------------ESGAHDFISGFPQGYDTEVGE----- 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HHHHHHHHH---------------------------HHTCHHHHHHSTTGGGSBCCG-----
T ss_pred cHHHHHhhhcccC--Ch-HHHHHHHHH---------------------------HHhHHHHHHhhhcchhhhhcC-----
Confidence 9999999864211 10 010111000 01234566777 66554443
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.... +++||.++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 345799999999999999999999999999999999999999999999864322 445555788877765 599999999
Q ss_pred CCeEEEEcChhHHHH
Q 001108 400 DGQIVYQGPRELVLE 414 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1156)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=351.88 Aligned_cols=210 Identities=27% Similarity=0.403 Sum_probs=173.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 57888888773 12358999999999999999999999999999999999876 45899999998764
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCCCC
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-------GLPGV 1005 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-------~~~~~ 1005 (1156)
. ..+++.+||++|++.+++ .||+||+.|+.. .... ++.++++++.+++.+..+... +.+ +
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~-~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccC-c
Confidence 3 234567999999998877 599999987521 1112 234678899999987765542 222 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++. +|+|||++||+++ ..+.||++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999987 6999999999975 3456999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88887764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=340.46 Aligned_cols=196 Identities=16% Similarity=0.227 Sum_probs=164.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+|
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~e 85 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVLD 85 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHHH
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHHH
Confidence 5999999999999999999999999999999999999998 999982 356999999998888999999
Q ss_pred HHHHHhhhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 246 TLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 246 ~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
|+.|+.... +...... .+....++.+++.+||.+..+..+ ..|
T Consensus 86 nl~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPK-------------------------------SHDYQVAMQALDYLNLTHLAKREF-----TSL 129 (253)
T ss_dssp HHHGGGGGGSCTTCCCC-------------------------------HHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred HHHHhhhhhcccccCCC-------------------------------HHHHHHHHHHHHHcCChHHhcCCh-----hhC
Confidence 999874321 1000000 001124577899999988777654 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ ..+++||.++|+..++.++||+|++|++|+ +
T Consensus 130 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~ 207 (253)
T 2nq2_C 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F 207 (253)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSCCEEEEEESCHHHHHHHCSEEEEEETTE-E
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E
Confidence 99999999999999999999999999999999999999999998765 324455667889899999999999999999 9
Q ss_pred EEcChhHH
Q 001108 405 YQGPRELV 412 (1156)
Q Consensus 405 ~~G~~~~~ 412 (1156)
+.|+++++
T Consensus 208 ~~g~~~~~ 215 (253)
T 2nq2_C 208 KFGETRNI 215 (253)
T ss_dssp EEEEHHHH
T ss_pred ecCCHHHH
Confidence 99998876
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=390.43 Aligned_cols=258 Identities=22% Similarity=0.329 Sum_probs=195.5
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++..++ ..+.......+.+...++++||++.+..
T Consensus 306 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 353 (587)
T 3qf4_A 306 IVRASASAKRVLEVLNEKPA-----IEEADNALALPNVEGSVSFENVEFRYFE--------------------------- 353 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-----CCCCTTCBCCSCCCCCEEEEEEEECSSS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----cCCCCCccccCCCCCcEEEEEEEEEcCC---------------------------
Confidence 45677788888887765543 1111111112233457999999988631
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 354 -----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~ 425 (587)
T 3qf4_A 354 -----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQE 425 (587)
T ss_dssp -----SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSS
T ss_pred -----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCC
Confidence 1234899999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++ .||+||+.|+... ...+...+..+ ..++ +.. ...|++..||
T Consensus 426 ~~lf~-~tv~eni~~~~~~----~~~~~~~~~~~---~~~~------------------------~~~--i~~l~~g~~~ 471 (587)
T 3qf4_A 426 TVLFS-GTIKENLKWGRED----ATDDEIVEAAK---IAQI------------------------HDF--IISLPEGYDS 471 (587)
T ss_dssp CCCCS-EEHHHHHTTTCSS----CCHHHHHHHHH---HTTC------------------------HHH--HHTSSSGGGC
T ss_pred CcCcC-ccHHHHHhccCCC----CCHHHHHHHHH---HhCc------------------------HHH--HHhcccchhh
Confidence 87775 5999999886421 11111111111 1110 111 2357778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .|||||||||+|||||+.+|++|+||||||+||+.++..|.+.|+++. .++|+ +.++|+...+ ..||+
T Consensus 472 ~~~~~~~-~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tv-i~itH~l~~~-~~~d~ 546 (587)
T 3qf4_A 472 RVERGGR-NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTT-FIITQKIPTA-LLADK 546 (587)
T ss_dssp EECSSSC-SSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEE-EEEESCHHHH-TTSSE
T ss_pred HhcCCCC-CcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEE-EEEecChHHH-HhCCE
Confidence 9987654 699999999999999999999999999999999999999999998863 34454 4467776654 68999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++.+
T Consensus 547 i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 547 ILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999875
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=345.02 Aligned_cols=220 Identities=24% Similarity=0.286 Sum_probs=171.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1156)
++|+|||++|++|++++|+|||||||||||++|+|.. +|+ +|+|.++|.++..... ++.++||+|++.+++
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 4999999999999999999999999999999999984 566 9999999998754432 234999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccccc
Q 001108 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (1156)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1156)
.+||+|++.+...... . ..+. +... ..+....++++++.+||+ ...+..++
T Consensus 111 ~~tv~e~~~~~~~~~~-------------~--~~~~-~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~~- 162 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVR-------------S--YRGQ-ETLD-----------RFDFQDLMEEKIALLKMPEDLLTRSVN- 162 (267)
T ss_dssp TCBHHHHHHHHHHHHH-------------H--GGGC-CCCC-----------HHHHHHHHHHHHHHTTCCTTTTTSBTT-
T ss_pred cccHHHHHHHHHHhhh-------------h--hhcc-ccCC-----------HHHHHHHHHHHHHHcCCChhHhcCCcc-
Confidence 9999999987541100 0 0000 0000 001123467789999996 45554432
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh-cCeEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~-~D~iil 397 (1156)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.. . +++||.++|+..++..+ ||+|++
T Consensus 163 ---~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~~ 237 (267)
T 2zu0_C 163 ---VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVHV 237 (267)
T ss_dssp ---TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEEE
T ss_pred ---cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEEE
Confidence 14999999999999999999999999999999999999999999988642 3 45566678888887776 899999
Q ss_pred EcCCeEEEEcChhHHHHHHHhcCCC
Q 001108 398 LSDGQIVYQGPRELVLEFFASMGFR 422 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~ 422 (1156)
|++|++++.|+++++.. ++..||.
T Consensus 238 l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 238 LYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EECCEEEEEcCHHHHhh-hhhcchh
Confidence 99999999999988753 4455543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=342.41 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=172.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+.. ...+.+|+||||+|+ |+++||+||||||||||+++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5788898887410 011569999999999 9999999999999999999999986 4 5899999998754
Q ss_pred hhcccceEE-EeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHH
Q 001108 936 QETFARISG-YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 936 ~~~~~~~~g-yv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqr 1013 (1156)
....++.+| |++|++.+ .+||+||+.+...++ ... ++.++++++.++|. +..++.+ .+||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211145689 99999877 899999999876443 111 34578899999998 8777664 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC-eEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d-~v~~l~~Gg~~~~~g~ 1092 (1156)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |||++||+++ .+.+.|| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998853 9999999986 3667899 9999986 68888887
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=344.25 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=170.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.|+.. ..+.+|+||||+|++|+++||+||||||||||+++|+|... + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 48899999887421 01358999999999999999999999999999999999875 4 79999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001108 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLPG 1004 (1156)
Q Consensus 935 ~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~ 1004 (1156)
.. ..+++.+||++|++.+++ .||+||+.|+.. ... ++.+.++++.+++.+.. ++..+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998876 699999987421 111 23456777777775543 2222222
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.||++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 8999999999873 3 56999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 688888874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=339.93 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=165.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEE-EEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (1156)
+.+|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ ||+|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 359999999999 9999999999999999999999999 98 999999998864321246799 99998766 8999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccccccccC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (1156)
+||+.|+..... . ....++.+++.+||. +..+..+ .
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999998653210 0 012356778899998 7766554 4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcC-eEEEEcCC
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD-DIILLSDG 401 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D-~iilL~~G 401 (1156)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++. . +|+.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~--tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K--EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S--EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C--cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998742 2 55667888888899999 99999999
Q ss_pred eEEEEcChhHHH
Q 001108 402 QIVYQGPRELVL 413 (1156)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1156)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=344.33 Aligned_cols=201 Identities=23% Similarity=0.343 Sum_probs=163.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++ .|
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~t 91 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-cc
Confidence 4899999999999999999999999999999999999998 999999999876533 2467999999987776 59
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc-------cc
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD-------TM 315 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-------t~ 315 (1156)
|+||+.|+.... .. ...++.+++.+|+.+..+ +.
T Consensus 92 v~enl~~~~~~~---~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~~ 132 (243)
T 1mv5_A 92 IRENLTYGLEGD---YT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNTE 132 (243)
T ss_dssp HHHHTTSCTTSC---SC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGCE
T ss_pred HHHHHhhhccCC---CC------------------------------------HHHHHHHHHHhChHHHHHhCccchhch
Confidence 999998753110 00 011344566677765443 33
Q ss_pred ccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+.| ||.++|+...+ ..||+|
T Consensus 133 ~~~-~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~t-vi~vtH~~~~~-~~~d~v 207 (243)
T 1mv5_A 133 VGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRT-TLVIAHRLSTI-VDADKI 207 (243)
T ss_dssp EST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSE-EEEECCSHHHH-HHCSEE
T ss_pred hcc-CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCChHHH-HhCCEE
Confidence 433 356799999999999999999999999999999999999999999999874 3445 45567776665 569999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
++|++|++++.|+++++..
T Consensus 208 ~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 208 YFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEETTEECCCSCHHHHHH
T ss_pred EEEECCEEEEeCCHHHHHh
Confidence 9999999999999988754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=337.71 Aligned_cols=196 Identities=23% Similarity=0.335 Sum_probs=167.9
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (1156)
+|+|+|+.+++|++++|+|||||||||||++|+|.++| .|+|.++|.++..... ++.++||+|++.+++.+||
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----CeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 89999999999999999999999999999999999987 2999999998754332 3569999999888999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|+.. ... . ...++.+++.+||.+..+..+ ..
T Consensus 91 ~e~l~~~~~-~~~----~----------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (249)
T 2qi9_C 91 WHYLTLHQH-DKT----R----------------------------------TELLNDVAGALALDDKLGRST-----NQ 126 (249)
T ss_dssp HHHHHTTCS-STT----C----------------------------------HHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHHhhc-cCC----c----------------------------------HHHHHHHHHHcCChhHhcCCh-----hh
Confidence 999987521 100 0 123566788999988777554 46
Q ss_pred CChhHHHHHHHHHHHhcCCc-------cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 324 ISGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~-------vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
|||||||||+||+||+.+|+ +|||||||+|||+.++..+++.|+++.+ . +++||.++|+...+.+++|+++
T Consensus 127 LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~d~v~ 204 (249)
T 2qi9_C 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-Q-GLAIVMSSHDLNHTLRHAHRAW 204 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999 9999999999999999999999998764 3 4455668889899999999999
Q ss_pred EEcCCeEEEEcChhHH
Q 001108 397 LLSDGQIVYQGPRELV 412 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1156)
+|++|++++.|+++++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 205 LLKGGKMLASGRREEV 220 (249)
T ss_dssp EEETTEEEEEEEHHHH
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998876
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=338.76 Aligned_cols=200 Identities=22% Similarity=0.320 Sum_probs=160.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
.++|+|||+++++|++++|+|||||||||||++|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 3589999999999999999999999999999999999874 7999999998754332 367999999987775 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-------CCcccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLDVCADT 314 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (1156)
||+||+.|+.. . ...+. +...++.+ ++++..||
T Consensus 108 tv~enl~~~~~-~---~~~~~------------------------------------~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL-D---ATDEE------------------------------------VIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT-T---CCHHH------------------------------------HHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC-C---CCHHH------------------------------------HHHHHHHhCCHHHHHhccccccc
Confidence 99999988531 0 00000 11122222 45666777
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+.| ||.++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~t-viivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRT-LIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSE-EEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCE-EEEEcCCHHHH-HhCCE
Confidence 7764 356799999999999999999999999999999999999999999999874 3444 55567776665 46999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=386.97 Aligned_cols=256 Identities=23% Similarity=0.352 Sum_probs=195.4
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.+++. +.......+.+..+++++||++.+..
T Consensus 320 ~~~~~~s~~ri~~~l~~~~~~------~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 366 (598)
T 3qf4_B 320 IQMALASAERIFEILDLEEEK------DDPDAVELREVRGEIEFKNVWFSYDK--------------------------- 366 (598)
T ss_dssp HHHHHHHHHHHHHHTTSCCCC------CCSSCCCCCSCCCCEEEEEEECCSSS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC------CCCCCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 567788899999988766541 10111112223457999999987621
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
..++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 367 ------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~ 437 (598)
T 3qf4_B 367 ------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQD 437 (598)
T ss_dssp ------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTT
T ss_pred ------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCC
Confidence 124899999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.++ +.||+||+.++... ...+...++.+ ..+ .+.. .-.+++..||
T Consensus 438 ~~lf-~~tv~eni~~~~~~----~~~~~~~~~~~---~~~------------------------~~~~--~~~~~~g~~t 483 (598)
T 3qf4_B 438 TILF-STTVKENLKYGNPG----ATDEEIKEAAK---LTH------------------------SDHF--IKHLPEGYET 483 (598)
T ss_dssp CCCC-SSBHHHHHHSSSTT----CCTTHHHHHTT---TTT------------------------CHHH--HHTSTTGGGC
T ss_pred Cccc-cccHHHHHhcCCCC----CCHHHHHHHHH---HhC------------------------CHHH--HHhccccccc
Confidence 8766 46999999986321 11111111110 000 0111 2246778899
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+. .|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|+ ++|+...+ ..||+
T Consensus 484 ~~~~~g~-~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~~-~~~d~ 558 (598)
T 3qf4_B 484 VLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSII-IAHRLNTI-KNADL 558 (598)
T ss_dssp BCHHHHT-TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEE-ESCCTTHH-HHCSE
T ss_pred hhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HcCCE
Confidence 9997654 699999999999999999999999999999999999999999999863 3455554 66666655 55999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+++++|+++++.+
T Consensus 559 i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 559 IIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEEECSSSEEECSCHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999865
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=377.48 Aligned_cols=257 Identities=23% Similarity=0.378 Sum_probs=193.8
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.+++. .+ .....+.....++++||++.+..
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 353 (582)
T 3b5x_A 308 FQRGMAACQTLFGLMDLETER-----DN--GKYEAERVNGEVDVKDVTFTYQG--------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcC-----CC--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 567888899999888766541 10 01111112356999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
...++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 354 -----~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b5x_A 354 -----KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQN 425 (582)
T ss_pred -----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCC
Confidence 0134899999999999999999999999999999999999998 9999999998865432 4679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++ .||+||+.|+.. . ....+...++.+. .+ .+..++ .+++..||
T Consensus 426 ~~l~~-~tv~eni~~~~~-~--~~~~~~~~~~~~~---~~------------------------l~~~~~--~~p~g~~t 472 (582)
T 3b5x_A 426 VHLFN-DTIANNIAYAAE-G--EYTREQIEQAARQ---AH------------------------AMEFIE--NMPQGLDT 472 (582)
T ss_pred Ccccc-ccHHHHHhccCC-C--CCCHHHHHHHHHH---CC------------------------CHHHHH--hCcccccc
Confidence 87776 599999998641 0 1111111111110 00 011111 34567789
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|+ ++|+...+ +.||+
T Consensus 473 ~~~~~~-~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGENG-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLV-IAHRLSTI-EQADE 547 (582)
T ss_pred hhcCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEE-EecCHHHH-HhCCE
Confidence 998764 5799999999999999999999999999999999999999999999864 3455555 56665554 57999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998854
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=359.01 Aligned_cols=199 Identities=24% Similarity=0.243 Sum_probs=161.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1156)
..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 348999999999999999999999999999999999987 6 8999999999877654 368999999988876 6
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc-------
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT------- 314 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 314 (1156)
||+||+.+... .. ...++.+++.+||.+..+.
T Consensus 109 tv~enl~~~~~-----~~------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----HS------------------------------------DQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----SC------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----cC------------------------------------HHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964211 00 0123445667777654443
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+++. ...|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++. .+ +++|.++|+. +....||+
T Consensus 148 ~i~~~-g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~-~tvi~vtHd~-e~~~~aDr 222 (390)
T 3gd7_A 148 VLVDG-GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--AD-CTVILCEARI-EAMLECDQ 222 (390)
T ss_dssp EECTT-TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TT-SCEEEECSSS-GGGTTCSE
T ss_pred ccccc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CC-CEEEEEEcCH-HHHHhCCE
Confidence 33332 23599999999999999999999999999999999999999999998742 33 4455567775 56678999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|+|++.|+++++..
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998854
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=359.11 Aligned_cols=211 Identities=20% Similarity=0.282 Sum_probs=176.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|++++|+. ++..+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 46899999998842 23468999999999999999999999999999999999864 57999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCC------CC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------PG 1004 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~------~~ 1004 (1156)
+.. ..+++.+|||+|++.+++ +||+||+.+.. .. .++.++++++.++|.++.++.+.. ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 653 234577999999999987 69999996421 11 134578899999998877766431 11
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
...|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .|+|||+++|+++ ....||++++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~- 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE- 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-
Confidence 23499999999999999999999999999999999999999999999864 5899999999975 4567999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (390)
T 3gd7_A 229 NKVRQYDSI 237 (390)
T ss_dssp TEEEEESSH
T ss_pred CEEEEECCH
Confidence 799999975
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=377.19 Aligned_cols=257 Identities=22% Similarity=0.377 Sum_probs=192.1
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.++....++|+.++++.+++. .+ .....+.....++++||++.+..
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 353 (582)
T 3b60_A 308 FQRGMAACQTLFAILDSEQEK-----DE--GKRVIDRATGDLEFRNVTFTYPG--------------------------- 353 (582)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC-----CC--CCBCCSCCCCCEEEEEEEECSSS---------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCc-----cC--CCCCCCCCCCcEEEEEEEEEcCC---------------------------
Confidence 456777888888777655430 00 01111112346999999987621
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+ .+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 354 ---~--~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b60_A 354 ---R--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQN 425 (582)
T ss_dssp ---S--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSS
T ss_pred ---C--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccC
Confidence 1 134899999999999999999999999999999999999998 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+++ .||+||+.|+.. . ....+...++.+ ..+ .+..++ .+++..||
T Consensus 426 ~~l~~-~tv~eni~~~~~-~--~~~~~~~~~~l~---~~~------------------------l~~~~~--~~p~g~~~ 472 (582)
T 3b60_A 426 VHLFN-DTVANNIAYART-E--EYSREQIEEAAR---MAY------------------------AMDFIN--KMDNGLDT 472 (582)
T ss_dssp CCCCS-SBHHHHHHTTTT-S--CCCHHHHHHHHH---TTT------------------------CHHHHH--HSTTGGGS
T ss_pred CcCCC-CCHHHHHhccCC-C--CCCHHHHHHHHH---HcC------------------------CHHHHH--hccccccc
Confidence 88776 599999998641 0 111111111111 000 011111 24567889
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.+|+.+ ..|||||||||+|||||+.+|++++||||||+||+.++..+.+.|+++. .++|+|+ ++|+...+ +.||+
T Consensus 473 ~~~~~~-~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~-itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTTS-CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEE-ECSCGGGT-TTCSE
T ss_pred cccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-EeccHHHH-HhCCE
Confidence 998764 5799999999999999999999999999999999999999999999874 3455544 66666554 57999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=416.53 Aligned_cols=261 Identities=20% Similarity=0.298 Sum_probs=201.0
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1156)
.+......+|+.++++..++ ..+............+|+|+||++.|..
T Consensus 1041 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~g~I~f~nVsf~Y~~--------------------------- 1088 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRKISK-----IDSLSLAGEKKKLYGKVIFKNVRFAYPE--------------------------- 1088 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-----SCTTCCCSBCCCCCCCEEEEEEEECCTT---------------------------
T ss_pred HHHHHHHHHHHHHHhhCccc-----CCCccCCCCCCCCCCeEEEEEEEEeCCC---------------------------
Confidence 45677788888887766554 1111111112223458999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCC
Q 001108 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1156)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1156)
+...++|+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|++||+++.+... |+.++||||+
T Consensus 1089 ----~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qd 1161 (1321)
T 4f4c_A 1089 ----RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQE 1161 (1321)
T ss_dssp ----SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSS
T ss_pred ----CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCC
Confidence 12345999999999999999999999999999999999999998 9999999999988764 5789999998
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+| +.||||||.|+..-. ....+.+.++++.. ++ +.. +-.|+++.||
T Consensus 1162 p~LF-~gTIreNI~~gld~~--~~sd~ei~~Al~~a---~l------------------------~~~--I~~Lp~GldT 1209 (1321)
T 4f4c_A 1162 PTLF-DCSIAENIIYGLDPS--SVTMAQVEEAARLA---NI------------------------HNF--IAELPEGFET 1209 (1321)
T ss_dssp CCCC-SEEHHHHHSSSSCTT--TSCHHHHHHHHHHT---TC------------------------HHH--HHTSTTTTCS
T ss_pred CEee-CccHHHHHhccCCCC--CCCHHHHHHHHHHh---CC------------------------hHH--HHcCcCCCCC
Confidence 7666 569999998874211 11222233332221 11 011 2368899999
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.||+++. +||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|+ +.| +..+...||+
T Consensus 1210 ~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~-IAH-RLsTi~~aD~ 1284 (1321)
T 4f4c_A 1210 RVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIV-IAH-RLNTVMNADC 1284 (1321)
T ss_dssp EETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEE-ECS-SSSTTTTCSE
T ss_pred EecCCCc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEE-ecc-CHHHHHhCCE
Confidence 9998765 599999999999999999999999999999999999999999998743 3445444 555 4567788999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001108 395 IILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1156)
|+||++|+|+++|+|+++++
T Consensus 1285 I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1285 IAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEESSSSEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999986
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=331.88 Aligned_cols=200 Identities=22% Similarity=0.331 Sum_probs=160.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.++. +++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4789999988741 12458999999999999999999999999999999999876 5689999998
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCC
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~ 1007 (1156)
.+||++|++.+++. ||+||+.|+.. ... ..++++++.+++.+..+. .++.+ +..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 38999999988875 99999987521 111 123345555555433222 22222 468
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++. .+.||++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~--~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH--LKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH--HHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH--HHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 48999999999753 356999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8888874
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=328.43 Aligned_cols=188 Identities=19% Similarity=0.265 Sum_probs=155.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 5999999999999999999999999999999999999998 999999998875 34577999999998999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.|+....+. .. + ...++.+++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~~----------------------------------~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-KV----------------------------------N-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-CC----------------------------------C-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-ch----------------------------------H-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99987543211 00 0 1235667889999865 543 45699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. .+.| |+.++|+..++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t-iiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGI-VIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSE-EEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCE-EEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999998764 3444 455677888888888887644 4444
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=357.19 Aligned_cols=214 Identities=23% Similarity=0.314 Sum_probs=178.3
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++|++++|+. +++.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 405 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGH 405 (582)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCE
Confidence 346999999999852 11458999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~~~ 1002 (1156)
++.. ..+++.+|||+|++.+++ .||+||+.++.. +..+ ++.++++++.+++.+..+.. +|.
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 7643 345678999999998887 499999998531 1112 34578889998887655443 343
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. +.+||||||||++|||||+++|+||+|||||||||+.+++.+++.|+++.+ |+|||+++|+++ ..+.||++++|+
T Consensus 477 ~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~ 552 (582)
T 3b5x_A 477 N-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVD 552 (582)
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEE
Confidence 3 467999999999999999999999999999999999999999999999864 999999999986 346799999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 553 ~-G~i~~~g~~ 562 (582)
T 3b5x_A 553 E-GEIIERGRH 562 (582)
T ss_pred C-CEEEEECCH
Confidence 6 689998874
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=327.40 Aligned_cols=196 Identities=21% Similarity=0.312 Sum_probs=151.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 35899999999999999999999999999999999999998 99999998 39999999887774 999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.... . ....+.. +..+ .+..++. ++...++.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~~---~~~~------------------------l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSVI---KACQ------------------------LEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHHH---HHTT------------------------CHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHHH---HHhC------------------------cHHHHHh--CcccccccccC-CCCcC
Confidence 9999863210 0 0000000 0000 0111222 23334555654 35679
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L-~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
||||||||+|||||+.+|+++||||||+|||+.++..+++.+ +++. .+. +|+.++|+...+ ..||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~-tvi~vtH~~~~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANK-TRILVTSKMEHL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTS-EEEEECCCHHHH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCC-EEEEEcCChHHH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999864 4432 234 455567777666 46999999999999
Q ss_pred EEEcChhHHH
Q 001108 404 VYQGPRELVL 413 (1156)
Q Consensus 404 v~~G~~~~~~ 413 (1156)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=330.34 Aligned_cols=199 Identities=23% Similarity=0.395 Sum_probs=157.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|+++.|+. +++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 788999988741 12458999999999999999999999999999999999876 6789999998
Q ss_pred hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC------ccc-ccccCCCCCCCC
Q 001108 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PLR-QSLVGLPGVSGL 1008 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~------~~~-~~~~~~~~~~~L 1008 (1156)
.+||++|++.+ +.+||+||+.|+... ..+ ..+++++.+++. +.. +...+.+ +..|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP----YYRSVIQACALLPDLEILPSGDRTEIGEK-GVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT----HHHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH----HHHHHHHHHhhHHHHHhccccccccccCC-CCCC
Confidence 28999999864 578999999875321 111 123344444432 211 1112222 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999874 3 57999999986 6
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
+++..|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 88888874
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=353.42 Aligned_cols=213 Identities=22% Similarity=0.305 Sum_probs=177.8
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++++|++++|+. +++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 46999999998841 11358999999999999999999999999999999999876 568999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------SLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~~~~ 1003 (1156)
+.. ..+++.+|||+|++.+++ .||+||+.++.. ...+ ++.++++++.+++.+..+ +.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 653 335567999999999887 499999998531 1122 245788888888876543 334443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+.+||||||||++|||||+++|+||+|||||||||+.+++.+++.|+++.+ |+|||+++|+++. .+.||++++|++
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~ 553 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED 553 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999864 9999999999873 467999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b60_A 554 -GIIVERGTH 562 (582)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEecCH
Confidence 689998874
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=364.75 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=174.2
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
...++++|++++|+. ++.+|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 352 ~~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCE
Confidence 347999999998851 2358999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~~~ 1002 (1156)
++.. ..+++.+|||+|++.+++ .||+||+.++. +..+. +.++++++.+++.+..+.. +|.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN-----PGATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS-----TTCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8653 345678999999998875 59999998752 11222 2356667766665544333 222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. +.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++. + +.||++++|+
T Consensus 488 ~-g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~ 563 (598)
T 3qf4_B 488 N-GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLR 563 (598)
T ss_dssp H-HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEEC
T ss_pred C-CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 1 24799999999999999999999999999999999999999999999985 59999999999974 4 5699999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 564 ~-G~i~~~g~~ 573 (598)
T 3qf4_B 564 D-GEIVEMGKH 573 (598)
T ss_dssp S-SSEEECSCH
T ss_pred C-CEEEEECCH
Confidence 6 689999874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=330.46 Aligned_cols=195 Identities=25% Similarity=0.340 Sum_probs=151.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+|
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~e 84 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLRE 84 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHHH
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHHH
Confidence 4899999999999999999999999999999999999998 99999998 3999999875 56899999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC-cccccccccccccCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGI 324 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~L 324 (1156)
|+.|+.... . +...++. +. ..+++.+++ +...+|.++ +.+..|
T Consensus 85 nl~~~~~~~---~--~~~~~~~---~~---------------------------~~l~~~~~~~~~~~~~~~~-~~~~~L 128 (237)
T 2cbz_A 85 NILFGCQLE---E--PYYRSVI---QA---------------------------CALLPDLEILPSGDRTEIG-EKGVNL 128 (237)
T ss_dssp HHHTTSCCC---T--THHHHHH---HH---------------------------TTCHHHHTTSTTGGGSEES-TTSBCC
T ss_pred HhhCccccC---H--HHHHHHH---HH---------------------------HhhHHHHHhcccccccccc-CCCCCC
Confidence 999864211 0 0000000 00 001222332 223344554 345689
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHH---HHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR---QNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~---~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+ .+. .+ ++||.++|+...+ ..||+|++|++|
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~-~tviivtH~~~~~-~~~d~v~~l~~G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KN-KTRILVTHSMSYL-PQVDVIIVMSGG 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TT-SEEEEECSCSTTG-GGSSEEEEEETT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CC-CEEEEEecChHHH-HhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999884 321 23 4455567776665 579999999999
Q ss_pred eEEEEcChhHHHH
Q 001108 402 QIVYQGPRELVLE 414 (1156)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1156)
++++.|+++++..
T Consensus 205 ~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 205 KISEMGSYQELLA 217 (237)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEeCCHHHHhh
Confidence 9999999988754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=368.65 Aligned_cols=214 Identities=21% Similarity=0.301 Sum_probs=176.0
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
.+..++++|++++|+. +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 338 ~~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g 404 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDE 404 (587)
T ss_dssp CCCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESS
T ss_pred CCCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECC
Confidence 3457999999999852 23458999999999999999999999999999999999876 5689999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVG 1001 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~ 1001 (1156)
.++.. ..+++.+|||+|++.+++. ||+||+.++. +..+. +.++++++..++.+. .++.++
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR-----EDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC-----SSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC-----CCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 98754 3456779999999988864 9999998752 11222 234556666665443 234444
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
.. +.+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +|+|||+++|+++ ....||++++|
T Consensus 475 ~~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl 550 (587)
T 3qf4_A 475 RG-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVL 550 (587)
T ss_dssp SS-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEE
T ss_pred CC-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEE
Confidence 43 45799999999999999999999999999999999999999999999974 5899999999986 35689999999
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
++ |+++..|+.
T Consensus 551 ~~-G~i~~~g~~ 561 (587)
T 3qf4_A 551 HE-GKVAGFGTH 561 (587)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEEEECCH
Confidence 86 799999985
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=369.16 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=176.4
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc
Q 001108 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1156)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1156)
+..++++|++++|+. ++..+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 457999999998852 12458999999999999999999999999999999999876 56899999998
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001108 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1156)
Q Consensus 933 ~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~ 1002 (1156)
++.. ...++.+|||+|++.+++. ||+||+.++. +... ++.+.++++.+++.+.. ++.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC-----CCCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 8653 3456679999999988875 9999998752 1122 23466777777765433 333443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1003 ~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
. +.+||||||||++|||||+++|+||+|||||||||+.++..+++.++++. +|+|+|+++|+++. .+.||++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE
Confidence 3 35799999999999999999999999999999999999999999999885 58999999999874 46799999998
Q ss_pred cCcEEEEecCC
Q 001108 1083 RGGQEIYVGPL 1093 (1156)
Q Consensus 1083 ~Gg~~~~~g~~ 1093 (1156)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999984
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=322.75 Aligned_cols=195 Identities=23% Similarity=0.351 Sum_probs=148.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|+++.. +.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 57888887641 248999999999999999999999999999999999876 6789999988
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCC
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS-------LVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~ 1007 (1156)
.+||++|++.+++. ||+||+. +. . ... ..+.++++.+++.+..+. ..+.. +..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 38999999988874 9999997 31 1 111 123445566666443222 12221 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 4554 5899999999975 3457999999986 68
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 8888874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=384.17 Aligned_cols=260 Identities=19% Similarity=0.353 Sum_probs=195.7
Q ss_pred hHhhHHHHHHhhhccccchHHHHHHHHHHHhhcCC--CCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhh
Q 001108 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI--DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1156)
.++.....+|+.++++..++ .... ...+. +....+++|+||++.+..
T Consensus 994 ~~~~~~a~~ri~~~l~~~~~-----~~~~-~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 1042 (1284)
T 3g5u_A 994 YAKATVSASHIIRIIEKTPE-----IDSY-STQGLKPNMLEGNVQFSGVVFNYPT------------------------- 1042 (1284)
T ss_dssp STHHHHHHHHHHHHHHSCCS-----SSSC-CSSCCCTTTTSCCEEEEEEEBCCSC-------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----cccc-ccccccccCCCCcEEEEEEEEECCC-------------------------
Confidence 45667777888777665443 1000 00111 122457999999988732
Q ss_pred hhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEc
Q 001108 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1156)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~ 232 (1156)
+...++|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+
T Consensus 1043 ------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~ 1113 (1284)
T 3g5u_A 1043 ------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVS 1113 (1284)
T ss_dssp ------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEE
T ss_pred ------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEEC
Confidence 11235899999999999999999999999999999999999998 9999999999876543 46799999
Q ss_pred CCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
|++.++ +.||+|||.++..... ...+.+.+..+.. + .+.. .-.+++.+
T Consensus 1114 Q~~~l~-~~ti~eNi~~~~~~~~--~~~~~i~~~~~~~---~------------------------~~~~--i~~l~~gl 1161 (1284)
T 3g5u_A 1114 QEPILF-DCSIAENIAYGDNSRV--VSYEEIVRAAKEA---N------------------------IHQF--IDSLPDKY 1161 (1284)
T ss_dssp SSCCCC-SSBHHHHHTCCCSSCC--CCHHHHHHHHHHH---T------------------------CHHH--HSSTTTGG
T ss_pred CCCccc-cccHHHHHhccCCCCC--CCHHHHHHHHHHh---C------------------------cHHH--HHhCcccc
Confidence 988655 6799999988642211 1111122211111 0 0111 23578889
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
||.||+.+. .|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. .++| ++.++|+...+ ..|
T Consensus 1162 dt~vge~G~-~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~t-vi~isH~l~~i-~~~ 1236 (1284)
T 3g5u_A 1162 NTRVGDKGT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRT-CIVIAHRLSTI-QNA 1236 (1284)
T ss_dssp GCBCSTTSC-SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSC-EEEECSCTTGG-GSC
T ss_pred ccccCCCCC-ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCE-EEEEecCHHHH-HcC
Confidence 999997654 699999999999999999999999999999999999999999998742 3444 55577887776 569
Q ss_pred CeEEEEcCCeEEEEcChhHHHH
Q 001108 393 DDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
|+|++|++|+++++|+++++++
T Consensus 1237 dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1237 DLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp SEEEEEETBEEEEEECHHHHHH
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=317.58 Aligned_cols=195 Identities=21% Similarity=0.300 Sum_probs=147.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 3899999999999999999999999999999999999998 99999998 3999999987777 59999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+. +... .. ....+. .+..+ .+..++. ++...++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~~~---~~~~~------------------------l~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSV---IKACQ------------------------LEEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHH---HHHTT------------------------CHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHH---HHHhC------------------------hHHHHHh--ccccccchhcC-ccCcCC
Confidence 997 4211 00 000000 00000 0111222 23334555553 356799
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L-~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
|||||||+|||||+.+|++|||||||+|||+.++..+++.+ +++. .+ .+||.++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~-~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--AN-KTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TT-SEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CC-CEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 23 4555577777665 569999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
+.|+++++..
T Consensus 238 ~~g~~~~l~~ 247 (290)
T 2bbs_A 238 FYGTFSELQN 247 (290)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHhh
Confidence 9999988753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=321.75 Aligned_cols=191 Identities=27% Similarity=0.303 Sum_probs=161.3
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 688999999999999999999999999999999999998 899976 2369999999877788999998
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+.+..... .. ....++.+++.+||.+..+..++ .|||
T Consensus 438 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHHH-----------HH---------------------------CHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 86531000 00 01235667899999877776554 5999
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~--G~iv 404 (1156)
||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..+ .+|+.++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999865334 4556688999999999999999986 8889
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-31 Score=318.34 Aligned_cols=191 Identities=27% Similarity=0.301 Sum_probs=159.9
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++||+|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 688999999999999999999999999999999999998 899975 2369999998877788999988
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+....... .. ....++.+++.+||.+..+..++ .|||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDREVN-----ELSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSBGG-----GCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 76431100 00 01234567888999876666554 6999
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~--G~iv 404 (1156)
||||||+||++|+.+|++|||||||+|||..++..|++.|++++...+ .+|+.++|+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999999999999999999999999999999999999998764334 4555688999999999999999986 7899
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=312.73 Aligned_cols=192 Identities=19% Similarity=0.197 Sum_probs=158.6
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+....+.+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 577788999999999999999999999999999999998 999997653 58999998766778999999
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+.+.... .... ....++.+++.+||.+..+..++ .|||
T Consensus 351 l~~~~~~--~~~~-----------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 388 (538)
T 3ozx_A 351 LENASKD--ALST-----------------------------------SSWFFEEVTKRLNLHRLLESNVN-----DLSG 388 (538)
T ss_dssp HHHHCSS--TTCT-----------------------------------TSHHHHHTTTTTTGGGCTTSBGG-----GCCH
T ss_pred HHHhhhh--ccch-----------------------------------hHHHHHHHHHHcCCHHHhcCChh-----hCCH
Confidence 9874210 0000 01134567788899877776554 6999
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC--CeEE
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~--G~iv 404 (1156)
||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++. .+++|+.++|+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998764 355566689999999999999999986 6667
Q ss_pred EEcChhHHH
Q 001108 405 YQGPRELVL 413 (1156)
Q Consensus 405 ~~G~~~~~~ 413 (1156)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=309.52 Aligned_cols=192 Identities=24% Similarity=0.240 Sum_probs=158.7
Q ss_pred eEeeceeEEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCC
Q 001108 166 TILKDVSGVIKPG-----RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 166 ~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1156)
.+++|+|+++.+| |+++|+|||||||||||++|+|+++|+ +|+. + .+..++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 4789999999999 779999999999999999999999998 7752 1 13469999998776777
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
.||+|++.... .+... ....++.+++.+||.+.++..+
T Consensus 428 ~tv~e~~~~~~--~~~~~------------------------------------~~~~~~~~l~~l~l~~~~~~~~---- 465 (608)
T 3j16_B 428 GTVRQLFFKKI--RGQFL------------------------------------NPQFQTDVVKPLRIDDIIDQEV---- 465 (608)
T ss_dssp SBHHHHHHHHC--SSTTT------------------------------------SHHHHHHTHHHHTSTTTSSSBS----
T ss_pred ccHHHHHHHHh--hcccc------------------------------------cHHHHHHHHHHcCChhhhcCCh----
Confidence 89999875422 11000 0113456788999988777655
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++....+ .+|+.++|+..++..++|+|++|++
T Consensus 466 -~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g-~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 466 -QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK-KTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp -SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEECEE
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998765444 4555689999999999999999986
Q ss_pred --CeEEEEcChhHHHH
Q 001108 401 --GQIVYQGPRELVLE 414 (1156)
Q Consensus 401 --G~iv~~G~~~~~~~ 414 (1156)
|+++..|++++++.
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=317.29 Aligned_cols=193 Identities=21% Similarity=0.268 Sum_probs=157.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+...|+++.|+ ++.+|+||||+|++|+++||+|||||||||||++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 466678887773 3579999999999999999999999999999999994 111 34433
Q ss_pred ChhcccceEEEeccCC-CCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 001108 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~-~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGq 1012 (1156)
... ..++|++|+. .+++.+||.|++.+ ... .. +++++++++.+++. +..++.+ ..|||||
T Consensus 492 ~~~---~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QEE---CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TTT---SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred ccc---eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 211 2368999874 66788999999975 111 11 45688999999995 5666664 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Eec
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1091 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~-~~g 1091 (1156)
|||++||++|+.+|+||||||||+|||+.++..+++.|++ .|+|||++||++. .+.+.||++++|++ |+++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999997 5899999999986 47788999999986 5665 778
Q ss_pred CC
Q 001108 1092 PL 1093 (1156)
Q Consensus 1092 ~~ 1093 (1156)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 74
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=315.99 Aligned_cols=203 Identities=22% Similarity=0.295 Sum_probs=132.9
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHH---------------------hhhcCCCCC--CeE---EEEEEEcCccCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---TGNITISGYPKK 935 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl---------------------~~L~g~~~~--~~~---~G~i~i~g~~~~ 935 (1156)
.+|+||||+|++||++||+||||||||||+ +++.|...+ +.+ .+.|.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 479999999999999999999999999997 566654332 112 356777776543
Q ss_pred hhcccceEEEeccCCCC-------------------CCCCCHHHHHHHHHHhhCCCCCChHHHHH------HHHHHHHHc
Q 001108 936 QETFARISGYCEQNDIH-------------------SPFVTIYESLLFSAWLRLSPEVDSETRKM------FIDEVMELV 990 (1156)
Q Consensus 936 ~~~~~~~~gyv~q~~~~-------------------~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~------~v~~~l~~l 990 (1156)
.. .++.+||++|...+ ++.+||+||+.+...+..... .....+. ...++++.+
T Consensus 112 ~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 112 RN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHT
T ss_pred cc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHHc
Confidence 21 22335555554332 356799999987533221110 0000000 112358888
Q ss_pred CCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 001108 991 ELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067 (1156)
Q Consensus 991 ~l~~~-~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1067 (1156)
+|.+. .++.+ ..|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|+++.++|.|||+|+||+
T Consensus 190 gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 190 GLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 88764 45553 4699999999999999999998 9999999999999999999999999988899999999997
Q ss_pred cHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 001108 1068 SIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1156)
Q Consensus 1068 ~~~i~~~~d~v~~l~-----~Gg~~~~~g~~ 1093 (1156)
+ ....||++++|. ++|++++.|+.
T Consensus 265 ~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 265 D--TMLAADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp H--HHHHCSEEEEECSSSGGGCCSEEEEECH
T ss_pred H--HHhhCCEEEEecccccccCCEEEEecCH
Confidence 5 456799999993 35799999985
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-30 Score=316.40 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=114.2
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHH
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~ 967 (1156)
++.+++|++++|+|+||||||||+++++|.... .|+ +.+.|++|++. ..+.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~----- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA----- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH-----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH-----
Confidence 348999999999999999999999999985321 121 12455666531 1222221
Q ss_pred hhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----H
Q 001108 968 LRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1042 (1156)
Q Consensus 968 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~-----~ 1042 (1156)
.+.. .+ +++ +...++..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 329 ~~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 329 YSWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp HTTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred HHcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 1111 11 112 2234555555443 3469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCC----------cHHHHHhcCeEEEEecC
Q 001108 1043 AAIVMRTVRNTVDTGRTVVCTIHQP----------SIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1043 ~~~i~~~l~~~~~~g~tvi~~~H~~----------~~~i~~~~d~v~~l~~G 1084 (1156)
+..+.++++.+++.|.|||+++|+. . .+...+|++++|.+|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEE
Confidence 9999999999988899999999997 3 355689999999874
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=273.05 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001108 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374 (1156)
Q Consensus 298 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~ 374 (1156)
.+..+|+.+||... .+| .....|||||||||.||++|+.+| ++|||||||+|||+.+...|++.|+++.. .+
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 35667889999642 223 344579999999999999999865 79999999999999999999999998864 34
Q ss_pred CeEEEEEecChhhHHhhcCeEEEE------cCCeEEEEcChhHHHH
Q 001108 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 375 ~t~ii~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~~ 414 (1156)
.| ||.++|+...+ ..||+|++| ++|+|+++|+++++.+
T Consensus 859 ~T-VIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 859 NT-VIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CE-EEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CE-EEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 44 55578888665 569999999 8999999999999853
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-25 Score=274.08 Aligned_cols=107 Identities=25% Similarity=0.275 Sum_probs=90.2
Q ss_pred HHHHHHHcCCcc-cccccccccccCCCChhHHHHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001108 299 TDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374 (1156)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~ 374 (1156)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|||||||+|||+.+...|++.|+++.. .+
T Consensus 825 ~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 898 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NG 898 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 356789999976 44444 4469999999999999999764 99999999999999999999999998864 34
Q ss_pred CeEEEEEecChhhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001108 375 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1156)
Q Consensus 375 ~t~ii~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~ 413 (1156)
.+||.++|+..++ ..||+|++| .+|++++.|+++++.
T Consensus 899 -~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 899 -DTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp -CEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred -CEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 4555678888775 689999999 789999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=271.68 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCccc-ccccccccccCCCChhHHHHHHHHHHHhcC---CccceeecCCCCCCHHHHHHHHHHHHHHHHhc
Q 001108 298 ITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 373 (1156)
Q Consensus 298 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~al~~~---p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~ 373 (1156)
.+..+|+.+||... .+. .+..|||||||||.||++|+.+ |++|||||||+|||+.+...|++.|++++. .
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 45778999999763 333 3457999999999999999996 799999999999999999999999998864 3
Q ss_pred CCeEEEEEecChhhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001108 374 SGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1156)
Q Consensus 374 ~~t~ii~i~q~~~~~~~~~D~iilL------~~G~iv~~G~~~~~~ 413 (1156)
+.+||.++|+..++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 45556688898888 889999999 799999999999874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=257.12 Aligned_cols=203 Identities=17% Similarity=0.148 Sum_probs=140.0
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC------------------------------------CeEEE
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITG 925 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~------------------------------------~~~~G 925 (1156)
.+|++++++|.+| +++|+|||||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 9999999999999999999553211 01157
Q ss_pred EEEEcCccCChhc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhhC-----------------------CCCCC---
Q 001108 926 NITISGYPKKQET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRL-----------------------SPEVD--- 975 (1156)
Q Consensus 926 ~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~-----------------------~~~~~--- 975 (1156)
.+.+||.+..... ....+++++|++.+... +..+...|.-+... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999998876422 22348999998776532 44444333211100 00000
Q ss_pred -------------------------------hHHHHHHHHHHHHHcCCCccc----------------cc---ccCCC--
Q 001108 976 -------------------------------SETRKMFIDEVMELVELNPLR----------------QS---LVGLP-- 1003 (1156)
Q Consensus 976 -------------------------------~~~~~~~v~~~l~~l~l~~~~----------------~~---~~~~~-- 1003 (1156)
.+.....+.+.++.+++.... +. .....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 001123345556666654310 00 01000
Q ss_pred ----CCCC-CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 1004 ----GVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 1004 ----~~~~-LSgGqrqrl~iA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
.+.. ||||||||++||++|+.+| ++|||||||+|||+.++..|.+.|+++. +|+|||+|||++. +.+.||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 0112 6999999999999999999 9999999999999999999999999997 6999999999974 568899
Q ss_pred eEEEE----ecCcEEEEe
Q 001108 1077 ELFLM----KRGGQEIYV 1090 (1156)
Q Consensus 1077 ~v~~l----~~Gg~~~~~ 1090 (1156)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 65 455443
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-27 Score=278.44 Aligned_cols=196 Identities=14% Similarity=0.062 Sum_probs=148.3
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEE-E-EEEcCccCChhcccceEEEeccCCC---CCCCCCHH
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQNDI---HSPFVTIY 959 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~q~~~---~~~~~Tv~ 959 (1156)
.++|+++++|++++|+||||||||||+++|+|... +..| + |.++|. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 37999999999999999999999999999999875 4578 8 999982 2456899999874 44567999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1033 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~a--L~~~p~i----llLDE 1033 (1156)
||+ |+....... .. ++.+.++++.+++.+..+ ...|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 654321111 00 122455677778876654 24699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--H---HHHHhcCe-----EEEEecCcEEEEecCCCC----cch
Q 001108 1034 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGQEIYVGPLGR----HSC 1098 (1156)
Q Consensus 1034 -PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~i~~~~d~-----v~~l~~Gg~~~~~g~~~~----~~~ 1098 (1156)
||++||+. ...+.++++++ |.|+|+++|+.+ . .+..++|+ +++|++.|+++ .|+... ...
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 66666666543 789999999987 3 34578899 99998345666 776431 123
Q ss_pred hHHHHHHh
Q 001108 1099 HLISYFEA 1106 (1156)
Q Consensus 1099 ~~~~~f~~ 1106 (1156)
.+.+||..
T Consensus 343 ~i~~~f~g 350 (460)
T 2npi_A 343 SIREYFYG 350 (460)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 45567754
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-26 Score=274.91 Aligned_cols=186 Identities=10% Similarity=0.043 Sum_probs=142.9
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee-E-EEEcCccCCCcCccceEEEEcCCCC---CCCCCCH
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-T-VTYNGHDMDEFVPQRTAAYISQHDN---HIGEMTV 243 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~nG~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 243 (1156)
.++|+.+++|++++|+||||||||||+++|+|.+.|+ +| + |.+||. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999887 99 9 999982 3567999999873 4566899
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+ |+..... +.. .. ..+..+++.+||.+..+ ...
T Consensus 200 ~eni-~~~~~~~-~~~-----------~~------------------------~~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTS-GAT-----------LL------------------------HNKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp TCTT-CSCBCBS-SCC-----------SS------------------------CCBCCEECCCCSSSGGG-------CHH
T ss_pred hhhh-ccccccc-Ccc-----------hH------------------------HHHHHHHHHhCCCcccc-------hhh
Confidence 9998 7643210 000 00 00122355678876554 346
Q ss_pred CChhHHHHHHHHHH--HhcCCcc----ceeec-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh-----hHHhh
Q 001108 324 ISGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP-----ETYDL 391 (1156)
Q Consensus 324 LSGGqrqRvsia~a--l~~~p~v----llLDE-ptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~-----~~~~~ 391 (1156)
|||||||||+||++ |+.+|++ ||||| ||++||+. ...|.+.+++ .+.++|+++|++.+ ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 4455555543 35566665555441 66689
Q ss_pred cCe-----EEEEc-CCeEEEEcChhHHH
Q 001108 392 FDD-----IILLS-DGQIVYQGPRELVL 413 (1156)
Q Consensus 392 ~D~-----iilL~-~G~iv~~G~~~~~~ 413 (1156)
+|+ |++|. +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987663
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=245.93 Aligned_cols=236 Identities=15% Similarity=0.136 Sum_probs=147.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------------------CCce
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----------------------------------LKVS 209 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~~ 209 (1156)
..+|+++++.+.+| +++|+|||||||||||++|.+...+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34799999999999 99999999999999999997665420 0116
Q ss_pred eEEEEcCccCCCcCc----cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-----CchhhHhHHHHHHHHhcCCCCCC-
Q 001108 210 GTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GTRYEMLTELARREKAAGIKPDP- 279 (1156)
Q Consensus 210 G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~- 279 (1156)
|++.+||.+++.... ...+++++|++.++. .+..+...|--..... ...+....+..+..... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 889999998764222 234899999875543 3666555542211100 00000011111100000 00000
Q ss_pred ----------ChHHHHHHHhh-----------hhhhhHHHHHHHHHHcCCcccc----------------cc---cccc-
Q 001108 280 ----------DIDVYMKAIAT-----------EGQEANVITDYYLKVLGLDVCA----------------DT---MVGD- 318 (1156)
Q Consensus 280 ----------d~~~~~~~~~~-----------~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 318 (1156)
.++.+.+.... ........+...++.++++... +. .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 01111111000 1112233456667777765411 00 1111
Q ss_pred -----cccCC-CChhHHHHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 319 -----EMIRG-ISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 319 -----~~~~~-LSGGqrqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
..++. |||||||||+||++|+.+| ++|||||||+|||+.+...|.+.|+++. .+.++ |.++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~v-i~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQV-LVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEE-EEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEE-EEEeCcH-HHHh
Confidence 11222 6999999999999999999 9999999999999999999999999875 24454 4467775 6678
Q ss_pred hcCeEEEE----cCCeEEEEc
Q 001108 391 LFDDIILL----SDGQIVYQG 407 (1156)
Q Consensus 391 ~~D~iilL----~~G~iv~~G 407 (1156)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-26 Score=242.42 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=98.0
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHH
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
++.+|+|| ++|++++|+||||||||||+++|+|. . +.+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 34578886 89999999999999999999999998 5 33454421101111112356799999975 4
Q ss_pred HHH-HHHH----HhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001108 960 ESL-LFSA----WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1156)
Q Consensus 960 e~l-~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP 1034 (1156)
||+ .+.. .+... .. .+.++++++. + | |||||++|||||+.+|+|||||||
T Consensus 77 enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ---CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 554 2311 11110 01 1234455543 2 2 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
|+| ++..+++.|+++ ++|+||| +||+++
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999 888999999988 6799999 999975
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=232.19 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 1005 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3579999999999999999 799999999999999999999999999999888999999999975 46789999
Q ss_pred EEEecCcEEE
Q 001108 1079 FLMKRGGQEI 1088 (1156)
Q Consensus 1079 ~~l~~Gg~~~ 1088 (1156)
++|++ |+++
T Consensus 355 ~~l~~-G~i~ 363 (365)
T 3qf7_A 355 LRITG-GVVV 363 (365)
T ss_dssp EEEET-TEEC
T ss_pred EEEEC-CEEE
Confidence 99986 5664
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-23 Score=216.07 Aligned_cols=150 Identities=13% Similarity=0.178 Sum_probs=104.2
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCC-CCCHHHHHHH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLF 964 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~-~~Tv~e~l~~ 964 (1156)
||||++++||+++|+||||||||||++++.+-.. . +++ .. ..|+++|++.... .-++++.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------ISS-----DF---CRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EEH-----HH---HHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ecc-----HH---HHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764211 1 111 11 1266777643210 0011121111
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH---
Q 001108 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1041 (1156)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~--- 1041 (1156)
.. +.....+.....+.. ...|+|||||++||++|+.+|++|+|||||++||+.
T Consensus 65 -----------------~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11 122233444444432 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 1042 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1042 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
....+++.|+++.++|.|||+++|+++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 668899999888777999999999974 3444444
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=224.14 Aligned_cols=85 Identities=22% Similarity=0.227 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE--E
Q 001108 1006 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL--F 1079 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v--~ 1079 (1156)
..||+|||||++||++|+ .+|++|+|||||++||+.....+++.|+++. +|.|||+|||++. +.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 579999999999999997 6889999999999999999999999999984 5899999999964 57889986 7
Q ss_pred EEecCcEEEEecCC
Q 001108 1080 LMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1080 ~l~~Gg~~~~~g~~ 1093 (1156)
+|.+|...+.....
T Consensus 295 ~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 295 TMVNGVSAIVPVEV 308 (322)
T ss_dssp EESSSCEEEEECCC
T ss_pred EEeCCEEEEEEEEc
Confidence 88887777766654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-21 Score=221.43 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=72.1
Q ss_pred cccCCCChhHHHHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 319 EMIRGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~------~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
+.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.. .+.| |+.++|+... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~t-vi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKV-IVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSE-EEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCE-EEEEecchHH-HHhC
Confidence 456679999999999999999 79999999999999999999999999998753 3444 5557777765 7889
Q ss_pred CeEEEEcCCeEEE
Q 001108 393 DDIILLSDGQIVY 405 (1156)
Q Consensus 393 D~iilL~~G~iv~ 405 (1156)
|+|++|.+|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999974
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-23 Score=221.91 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=95.9
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
..+.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 345689996 89999999999999999999999999 886 777732101111112346799999965
Q ss_pred HHHHH-HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 243 VRETL-AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 243 V~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
+||+ .|..... ... . ... + ...++.+++. |
T Consensus 76 -~enl~~~~~~~~---------~~~---~---~~~-~-----------------~~~~~~~l~~-g-------------- 106 (208)
T 3b85_A 76 -NEKIDPYLRPLH---------DAL---R---DMV-E-----------------PEVIPKLMEA-G-------------- 106 (208)
T ss_dssp -----CTTTHHHH---------HHH---T---TTS-C-----------------TTHHHHHHHT-T--------------
T ss_pred -HHHHHHHHHHHH---------HHH---H---Hhc-c-----------------HHHHHHHHHh-C--------------
Confidence 6666 3321000 000 0 000 0 0122333332 2
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1156)
| ||||||+|||||+.+|++|||||||+| ++..+++.|+++ . . +++|+ ++|+..++
T Consensus 107 --l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 --I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-F-GSKMV-VTGDITQV 161 (208)
T ss_dssp --S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-T-TCEEE-EEEC----
T ss_pred --C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-C-CCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888899999875 2 3 45566 77776544
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-23 Score=244.65 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=135.5
Q ss_pred EEeeeeeEEEeCCe--------------------EEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccc
Q 001108 882 VLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 941 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge--------------------~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~ 941 (1156)
.+|++||+++++|+ ++||+||||||||||+|+|+|... +.+|.|.++|.+.. +
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t-----~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT-----M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----e
Confidence 47999999999999 999999999999999999999865 35788888886542 1
Q ss_pred eEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHH
Q 001108 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIA 1019 (1156)
Q Consensus 942 ~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~iA 1019 (1156)
.+|++|++ .++.+|+.|++.++. . +..++++++.+++.+..... .||+| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHHH
Confidence 27899985 567889888775531 0 12367889999987653322 28999 99999999
Q ss_pred HHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCcH-HHHHhcCeEE
Q 001108 1020 VELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDELF 1079 (1156)
Q Consensus 1020 ~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~i~~~~d~v~ 1079 (1156)
++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+- ++.+++|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999884 32 3678899998762 3677788875
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=214.75 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=69.2
Q ss_pred cCCCChhHHHHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE-
Q 001108 321 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI- 395 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i- 395 (1156)
+..|||||||||+||++|+ .+|++++|||||++||+.....+.+.|+++. .+.+ |+.++|. .++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~-vi~~tH~-~~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQ-FIVITHN-KIVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSE-EEEECCC-TTGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCe-EEEEECC-HHHHhhCceEE
Confidence 4579999999999999997 6899999999999999999999999999863 3444 4546666 5788999987
Q ss_pred -EEEcCCeE-EEEcChhHH
Q 001108 396 -ILLSDGQI-VYQGPRELV 412 (1156)
Q Consensus 396 -ilL~~G~i-v~~G~~~~~ 412 (1156)
++|.+|.. +.....++.
T Consensus 293 ~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEESSSCEEEEECCC---
T ss_pred EEEEeCCEEEEEEEEcchh
Confidence 88888855 444555443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-22 Score=236.16 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=131.8
Q ss_pred ceEeeceeEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc
Q 001108 165 LTILKDVSGVIKPGR--------------------LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~ 224 (1156)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|+++|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 468999999999999 99999999999999999999999998 999999997643
Q ss_pred cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHH
Q 001108 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1156)
Q Consensus 225 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1156)
+ .+|++|++ .++.+|+.||+.++.. + ..++.+++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHHH
Confidence 1 27899974 5778899988754310 0 01355677
Q ss_pred HcCCcccccccccccccCCCChh--HHHHHHHHHHHhc----------CCccceeecCCCCCCHHHHHHHHHHHHHHHH-
Q 001108 305 VLGLDVCADTMVGDEMIRGISGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371 (1156)
Q Consensus 305 ~lgL~~~~dt~vg~~~~~~LSGG--qrqRvsia~al~~----------~p~vllLDEptsgLD~~~~~~i~~~L~~~~~- 371 (1156)
.++|.+.. .. .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++++.|+++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887542 21 22 9999 9999999999999 9999999999999999999999999988752
Q ss_pred ---hc---CCeEEEEEecChhh--HHhhcCeEE
Q 001108 372 ---IN---SGTAVISLLQPAPE--TYDLFDDII 396 (1156)
Q Consensus 372 ---~~---~~t~ii~i~q~~~~--~~~~~D~ii 396 (1156)
.. ..++|+..+|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 22 23555444554544 666666663
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-21 Score=200.82 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~ 972 (1156)
.++|+||||||||||+++|+|... |.++|++... ...++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 689999999999999999999653 2223322111 02345689999975 222222 1 11100
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHH
Q 001108 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1045 (1156)
Q Consensus 973 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~a-----L~~~p~illLDE--PTsgLD~~~~~~ 1045 (1156)
. -.+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 --~----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --T----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --C----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --C----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 00122222 24699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1046 VMRTVRNTVDTGRTVVCTIH---QPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1046 i~~~l~~~~~~g~tvi~~~H---~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9988875 4777888886 544 35667776 4566666544
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-24 Score=227.33 Aligned_cols=183 Identities=12% Similarity=0.049 Sum_probs=118.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
..+++| .+|++|++++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 457888 6899999999999999999999999999753 233333333332221 12356899999887777777777
Q ss_pred HHHHHHHhhCC---CCCChHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001108 961 SLLFSAWLRLS---PEVDSETRKMFIDEV------MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1156)
Q Consensus 961 ~l~~~~~lr~~---~~~~~~~~~~~v~~~------l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illL 1031 (1156)
++.+......+ ...+.++.++.+++. ++.+++...++... ..|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHH
Confidence 65322111100 011233344445554 44445544444442 3466 88999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1032 DEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1032 DEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++...||++++|.+.|
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 9999998 78899999999999874 5899999999987 5888999999986544
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-23 Score=232.95 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=116.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGTT
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHHH
Confidence 4899999999999999999999999999999999997 4887 356778665554 58886
Q ss_pred -HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 246 -TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 246 -~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||.|.... . + .+...++.+ |++..| | ..|
T Consensus 172 ~ni~~~~~~-----~-~------------------------------------~~~~~i~~~-L~~gld---g----~~L 201 (305)
T 2v9p_A 172 TRAALVDDA-----T-H------------------------------------ACWRYFDTY-LRNALD---G----YPV 201 (305)
T ss_dssp CSCEEEEEE-----C-H------------------------------------HHHHHHHHT-TTGGGG---T----CCE
T ss_pred HhhccCccc-----c-H------------------------------------HHHHHHHHH-hHccCC---c----cCc
Confidence 77653110 0 0 011223333 454444 2 369
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||| |||++.+|+||| ||+||+.+...|.. + + |..++...+|+| +|++|+++
T Consensus 202 SgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------t-H~~~~~~~aD~i-vl~~G~iv 256 (305)
T 2v9p_A 202 SIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------H-SRVQTFRFEQPC-TDESGEQP 256 (305)
T ss_dssp ECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------T-TTEEEEECCCCC-CCC---CC
T ss_pred CHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------h-CCHHHHHhCCEE-EEeCCEEE
Confidence 9999999 999999999999 99999999887752 1 2 234456789999 99999999
Q ss_pred EEcChhHHHHHHHhc
Q 001108 405 YQGPRELVLEFFASM 419 (1156)
Q Consensus 405 ~~G~~~~~~~~f~~~ 419 (1156)
+.|+++++..+|.++
T Consensus 257 ~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 257 FNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred EeCCHHHHHHHHHHH
Confidence 999999996666553
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-20 Score=195.70 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=54.4
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~----------------~~~~i~~~L~~~~~~~~~t~ii~i~q~~~ 386 (1156)
..||||||||+||++++.+|++++|||||++||+. ....+.+.|+++.. .+.|+| .++|+..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-~g~tvi-~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-EGFRYV-YILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-HTCSEE-EEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-cCCcEE-EEeCCHH
Confidence 36999999999999999999999999999999999 55888888887755 355544 4677777
Q ss_pred hHHh
Q 001108 387 ETYD 390 (1156)
Q Consensus 387 ~~~~ 390 (1156)
++.+
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6643
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-21 Score=198.44 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=101.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1156)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 22334321 1111102246789999964 222222 00 00
Q ss_pred hhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHH--
Q 001108 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM-- 337 (1156)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~a-- 337 (1156)
+... +..++ +.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~~-~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLVG-SYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEET-TEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--ccccc-ccccCcCHHHHHHHHHHhhcc
Confidence 0000 01122 2344699999999999996
Q ss_pred ---HhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe--cChhhHHhhcCeEEEEcCCeEEE
Q 001108 338 ---MVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 338 ---l~~~p~vllLDE--ptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~--q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
++.+|++++||| ||++||+.....+.+.+++ .+.++|+++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999998888864 3455777775 788888889998 5566654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-20 Score=212.92 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=118.8
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cc--cceEEEeccCCC-CC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 953 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~ 953 (1156)
++.+|+++++|++++|+||||||||||+++|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457889999999999999999999999999999754 3468999999876431 12 235899999988 88
Q ss_pred CCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEE
Q 001108 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1031 (1156)
Q Consensus 954 ~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illL 1031 (1156)
+.+|++|++.+... +. .+ ..+++.+++.+..+..+ .+|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~~---~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-EG---YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-TT---CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-cC---Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 11 10 13456677766665553 3589 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1066 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1066 (1156)
| ||+|||+.... +++. ..|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999988652 3443 358999999994
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-21 Score=210.33 Aligned_cols=148 Identities=13% Similarity=0.112 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~ 975 (1156)
.+||+||||||||||+|+|+|... +..|+|.++|.+......++.+||++|++.+++.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999765 4689999999877555556789999999999999999999988754321 111
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001108 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1156)
Q Consensus 976 ~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1055 (1156)
. +.+.+.++ ....+... ..||||||||++|||+++. ++||||||.|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12233332 22333332 3699999999999999875 999999999999987 344555555
Q ss_pred CCCEEEEEecCCc
Q 001108 1056 TGRTVVCTIHQPS 1068 (1156)
Q Consensus 1056 ~g~tvi~~~H~~~ 1068 (1156)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999754
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-20 Score=206.56 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=127.1
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------c--cceEEEEcCCCC-C
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P--QRTAAYISQHDN-H 237 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~--~~~~~yv~Q~d~-~ 237 (1156)
++++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++.... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999999887 899999998865431 1 236899999988 8
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~~-----------------------d-------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-CC-----------------------c-------------------chHHhcCCCCcchhHHH-
Confidence 8899999999876421 00 0 00233456665555444
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hh
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP---------AP 386 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~---------~~ 386 (1156)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +++.+..+.++|+ ++|- ..
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 3589 999999999999999 99999 99999987542 3333223455555 4552 23
Q ss_pred hHHhhcCeEEEEcCCeE
Q 001108 387 ETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 387 ~~~~~~D~iilL~~G~i 403 (1156)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 34456678888888864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-20 Score=204.74 Aligned_cols=145 Identities=12% Similarity=0.175 Sum_probs=88.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1156)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++.....++.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999998 99999999987655556789999999999999999999998754321100
Q ss_pred hhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHh
Q 001108 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339 (1156)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~ 339 (1156)
.+.+. ..+. ....+.. ...|||||||||++||+++
T Consensus 80 ~~~i~------------------------------------~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEPIE------------------------------------KYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHHHH------------------------------------HHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCE
T ss_pred HHHHH------------------------------------HHHH----HHHHhhh-----HHhcCcccchhhhhheeee
Confidence 00000 0000 1111222 2359999999999999987
Q ss_pred cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 001108 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382 (1156)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~ 382 (1156)
. ++|||||+.|||+.. .+ .++.+.. . .++|++++
T Consensus 115 ~---lllldep~~gL~~lD-~~---~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD-LE---FMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp E---EEEECCCSSSCCHHH-HH---HHHHHHT-T-SEEEEEET
T ss_pred e---eEEEecCCCcCCHHH-HH---HHHHHHh-c-CcEEEEEe
Confidence 5 999999999999987 33 3444332 2 55555443
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=196.21 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred ccccC-CCChhHHHHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 318 DEMIR-GISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 318 ~~~~~-~LSGGqrqRvsia~al~---------~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
+..++ .+|||||||++||++|+ ++|+||||||||++||+..+..+++.|+++ . .++|+++|. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44566 79999999999999999 899999999999999999999999999763 2 566667774 33
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHH
Q 001108 388 TYDLFDDIILLSDGQIVYQGPRELV 412 (1156)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~ 412 (1156)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-22 Score=228.24 Aligned_cols=170 Identities=12% Similarity=0.129 Sum_probs=122.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++||++.|+ ..+|++||++|++|+++||+||||||||||+++|+|.. .|.|
T Consensus 101 ~i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I------- 154 (305)
T 2v9p_A 101 FFNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV------- 154 (305)
T ss_dssp HHHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE-------
T ss_pred eEEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE-------
Confidence 367788887763 13799999999999999999999999999999999965 3555
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHH-HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e-~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
++|++|++.++. .|++| |+.|.. +.+. .+++.++.+ |.+..+ +..||||||
T Consensus 155 --------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqk 206 (305)
T 2v9p_A 155 --------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRK 206 (305)
T ss_dssp --------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCS
T ss_pred --------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHH
Confidence 345677766554 36665 665521 1111 244555553 333223 246999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|| ||||+++|+||| ||+||+.++..|+. .+|+++ .++.+|++ +|++ |++++.|+.
T Consensus 207 QR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~ 261 (305)
T 2v9p_A 207 HK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD 261 (305)
T ss_dssp SC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred HH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH
Confidence 99 999999999999 99999999988762 189876 45789999 8875 788888874
Q ss_pred CCcchhHHHHHHhC
Q 001108 1094 GRHSCHLISYFEAI 1107 (1156)
Q Consensus 1094 ~~~~~~~~~~f~~~ 1107 (1156)
.++..+|..+
T Consensus 262 ----~el~~~y~~l 271 (305)
T 2v9p_A 262 ----ADWKSFFVRL 271 (305)
T ss_dssp ----HHHHHHHHHS
T ss_pred ----HHHHHHHHHH
Confidence 3444555554
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-20 Score=210.84 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=119.6
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cc--cceEEEeccCCC-CCC
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 954 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~~ 954 (1156)
..+|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999754 2368999999876431 12 245899999988 888
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEe
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1032 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illLD 1032 (1156)
..|++|++.+... + . .+ ..+++.+++.+..+..+ .+|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~--~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-G--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-T--CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-C--CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987642 1 1 11 12456677776665553 3588 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1066 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1066 (1156)
||+|||+.+.. +++. ..|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999988653 3343 348999999994
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=190.24 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=69.3
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 1005 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1005 ~~~LSgGqrq------rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||| |+++|++|+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||++. +.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 3579999999 677888888999999999999999999999999999998777899999999964 67899999
Q ss_pred EEEec
Q 001108 1079 FLMKR 1083 (1156)
Q Consensus 1079 ~~l~~ 1083 (1156)
+.|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99863
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-19 Score=206.86 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=103.7
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-cccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
+++++|+.+++|++++|+||||||||||+++|+|... +.+|.|.++|.+.-.. ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 6899999999999999999999999999999999865 3479999998642110 0112222221
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+ |||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 8999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
.+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|.
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356677776543458999999987 577899999998763
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-22 Score=216.68 Aligned_cols=177 Identities=10% Similarity=-0.019 Sum_probs=108.4
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh----hcccceEEEeccCCCCCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~~~~~~~T 957 (1156)
.-|+||||+|++|++++|+||||||||||+++|+|.. + |.|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 3599999999999999999999999999999999965 2 66777 654321 112356789999765443322
Q ss_pred H-HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCCCEEEE
Q 001108 958 I-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIFM 1031 (1156)
Q Consensus 958 v-~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~i-----A~aL~~~p~illL 1031 (1156)
. .+++.+ ..+..+ .... .+..++++++...+. +.+ ..||||||||++| +++|+.+|++++|
T Consensus 85 ~~~~~l~~-~~~~~~-~~g~--~~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 85 KNEDFLEY-DNYANN-FYGT--LKSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HTTCEEEE-EEETTE-EEEE--EHHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hccchhhh-hhcccc-cCCC--cHHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1 111110 001100 0000 123466677664432 111 2589999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCcHHHHHhcCeE
Q 001108 1032 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
||||+++|..+...|.+.+++... .+.+.|++.|+++ +.+..++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 999999999999999888877643 3455566666554 344444444
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-21 Score=209.31 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=95.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----cceEEEEcCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1156)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.++....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 4 78888 776543222 3568899997644433
Q ss_pred CCH-HHHHHH---HhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 001108 241 MTV-RETLAF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1156)
Q Consensus 241 lTV-~E~l~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1156)
++. .+++.+ ...+.+ .. ...++.+++...+ ..+
T Consensus 83 ~~~~~~~l~~~~~~~~~~g--~~------------------------------------~~~i~~~l~~~~~-----~il 119 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYG--TL------------------------------------KSEYDKAKEQNKI-----CLF 119 (218)
T ss_dssp HHHTTCEEEEEEETTEEEE--EE------------------------------------HHHHHHHHHTTCE-----EEE
T ss_pred hhhccchhhhhhcccccCC--Cc------------------------------------HHHHHHHHhCCCc-----EEE
Confidence 220 111110 000000 00 0112333332221 122
Q ss_pred cccccCCCChhHHHHHHH-----HHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001108 317 GDEMIRGISGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsi-----a~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~ 370 (1156)
. ..||||||||+++ +++++.+|++++|||||+++|..+...|.+.|....
T Consensus 120 ~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 120 E----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp E----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred E----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1 3599999999999 899999999999999999999999999998887654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-20 Score=201.96 Aligned_cols=180 Identities=12% Similarity=0.098 Sum_probs=110.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 23333333322211 1235689999987777778887
Q ss_pred HHHHHHhhhcC----CCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHH------HHHcCCcccccc
Q 001108 245 ETLAFSARCQG----VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY------LKVLGLDVCADT 314 (1156)
Q Consensus 245 E~l~f~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt 314 (1156)
+++.+.....+ .+...+ +.. ..++.. ++.+|+...++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~---~~~-----------------------------~~~~~~~~~~~~l~~~gl~~~~~~ 130 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQ---PVR-----------------------------AAAATGVPVLIEVDLAGARAIKKT 130 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHH---HHH-----------------------------HHHHHTCCEEEECCHHHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHH---HHH-----------------------------HHHHcCCeEEEEeCHHHHHHHHHh
Confidence 77643211110 000000 000 011111 222333332332
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgL----D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
. .+.|| +|+.+|++++|||||+|| |+..+..+.+.++++.+..+.|+ +.++|+..++..
T Consensus 131 ~-----~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tv-i~vtHdl~~~~~ 193 (207)
T 1znw_A 131 M-----PEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDK-VVVNRRLESACA 193 (207)
T ss_dssp C-----TTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSE-EEECSSHHHHHH
T ss_pred c-----CCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcE-EEECCCHHHHHH
Confidence 2 23466 899999999999999998 78899999999998765444454 557899999999
Q ss_pred hcCeEEEEc
Q 001108 391 LFDDIILLS 399 (1156)
Q Consensus 391 ~~D~iilL~ 399 (1156)
+||+|++|.
T Consensus 194 ~~d~i~~l~ 202 (207)
T 1znw_A 194 ELVSLLVGT 202 (207)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhc
Confidence 999999985
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-19 Score=202.09 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=127.4
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---------ccceEEEEcCCCC-CC
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---------PQRTAAYISQHDN-HI 238 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---------~~~~~~yv~Q~d~-~~ 238 (1156)
+.+|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.++.... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999999887 899999998865421 1246899999987 88
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
+.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~~-----------------------d-------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-CC-----------------------H-------------------HHHHHhcCCChhhhhHH--
Confidence 899999999876421 00 0 00233456665544443
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hhh
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP---------APE 387 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~---------~~~ 387 (1156)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +.+....+.|+|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 3588 999999999999999 99999 99999987653 2232223455555 5552 223
Q ss_pred HHhhcCeEEEEcCCeE
Q 001108 388 TYDLFDDIILLSDGQI 403 (1156)
Q Consensus 388 ~~~~~D~iilL~~G~i 403 (1156)
+....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4455678888888763
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-20 Score=215.82 Aligned_cols=174 Identities=17% Similarity=0.096 Sum_probs=135.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCc---cCCh--------hcccceEEEeccC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ--------ETFARISGYCEQN 949 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~q~ 949 (1156)
..+|+++ +.|.+|++++|+||||||||||+++|+|... +..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 9999999999999999999999999999766 45799999997 3322 2355779999995
Q ss_pred -CCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001108 950 -DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1156)
Q Consensus 950 -~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~i 1028 (1156)
+..++.+|+.+|+.+.+....... .+++ .+.+. ...||+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~----------~~v~------~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG----------QHVL------LIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT----------CEEE------EEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC----------CCHH------HHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 455677899999988664321100 0011 11122 24699999 999999 888988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1029 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1029 llLDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|+|||+.+...+.++++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|+.
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999865 3 64 9999999987 356899999975 788888753
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-19 Score=214.93 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=138.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc---cCCCc--------CccceEEEEcC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEF--------VPQRTAAYISQ 233 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~---~~~~~--------~~~~~~~yv~Q 233 (1156)
..+|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|. ++.++ ..++.++||+|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 4589999 999999999999999999999999999999998 999999998 44332 13478999999
Q ss_pred C-CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 234 H-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 234 ~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
+ +..++.+||.+|+.+.++... .+. .+ .....
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~--------------~~~------~~---------------------------v~~~l 253 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFR--------------DRG------QH---------------------------VLLIM 253 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH--------------TTT------CE---------------------------EEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH--------------hCC------CC---------------------------HHHHH
Confidence 5 556778899999988653210 000 00 00001
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCe-----EEEEEecCh
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGT-----AVISLLQPA 385 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~--~~~t-----~ii~i~q~~ 385 (1156)
| .+..+|||| |||+|| +.+|++ |+|||+.+...+.+.+.++.+. .++. +|+.++|+.
T Consensus 254 d------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl 317 (438)
T 2dpy_A 254 D------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ 317 (438)
T ss_dssp E------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS
T ss_pred H------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc
Confidence 1 123599999 999999 788887 9999999999999999876431 1242 566566776
Q ss_pred hhHHhhcCeEEEEcCCeEEEEcChhHH
Q 001108 386 PETYDLFDDIILLSDGQIVYQGPRELV 412 (1156)
Q Consensus 386 ~~~~~~~D~iilL~~G~iv~~G~~~~~ 412 (1156)
. ...+|++++|.+|+++..|++.++
T Consensus 318 ~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 318 Q--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6 678999999999999999988765
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=191.59 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 1007 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++|. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998873 799999994 3 2 7899
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|++ |+++..|+.
T Consensus 337 i~~l~~-G~i~~~g~~ 351 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADE 351 (359)
T ss_dssp EEEEET-TEEEECCCT
T ss_pred EEEEEC-CEEEecCCH
Confidence 999986 688888875
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-18 Score=192.17 Aligned_cols=182 Identities=16% Similarity=0.148 Sum_probs=115.3
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEE-EEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
+|+++++.+++|++++|+||||||||||++.|+|... +..| .|.+.+.........+.+.++.+... +++.++
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~ 97 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDS 97 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccc
Confidence 6999999999999999999999999999999999643 1124 45443333332222222233333221 122344
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS---G 1037 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq-rqrl~iA~aL~~~p~illLDEPTs---g 1037 (1156)
+.... + +.++..+.++++++...+. +.+. ...+|.+| +||+. |+++..+|++|||||||+ +
T Consensus 98 l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 98 LKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred cccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 43321 1 1122233344444322221 1111 13589998 66666 999999999999999999 5
Q ss_pred ---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCC--cH-------------------HHHHhcCeEEEEecCc
Q 001108 1038 ---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQP--SI-------------------DIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1038 ---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~--~~-------------------~i~~~~d~v~~l~~Gg 1085 (1156)
+|. .....+++.|++++++ |+|||+++|+. .. .+...||++++|.+|.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 565 6678899999998754 99999999995 21 4667899999998763
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-18 Score=194.24 Aligned_cols=133 Identities=13% Similarity=0.160 Sum_probs=100.1
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+ +... ++ + .
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~-------~~---~-~------- 216 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVF-------KH---H-K------- 216 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCC-------SS---C-S-------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--cccc-------cc---c-h-------
Confidence 789999999999999999999999999999999999998 9999999864 1100 00 0 0
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+. .+ .+ .+ |
T Consensus 217 -------~~--------------------------------------------------i~-------~~-----~g--g 225 (330)
T 2pt7_A 217 -------NY--------------------------------------------------TQ-------LF-----FG--G 225 (330)
T ss_dssp -------SE--------------------------------------------------EE-------EE-----CB--T
T ss_pred -------hE--------------------------------------------------EE-------EE-----eC--C
Confidence 00 00 00 01 8
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
||+||++||++|..+|++++|||||+. ++.+.|+.+. ..+.++++++|. .. +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~-~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHA-GS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEEC-SS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcc-cH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666543 233355555544 33 8889999999998853
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=159.79 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 1005 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA------~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
+..||||||||++|| ++|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.||++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999886 899999999999999999999999999999999877799999999997 356889999
Q ss_pred EEEe
Q 001108 1079 FLMK 1082 (1156)
Q Consensus 1079 ~~l~ 1082 (1156)
++|+
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=191.87 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=66.4
Q ss_pred ccCCC-ChhHHHHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 320 MIRGI-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 320 ~~~~L-SGGqrqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|++++. +.+ ||.++|.. ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~-vi~itH~~-~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLA-QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSE-EEEECCCH-HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCE-EEEEecCH-HHHHhCCEEE
Confidence 35567 999999999999999999 99999999999999999999999999864 344 55567774 4667899999
Q ss_pred EEcCC
Q 001108 397 LLSDG 401 (1156)
Q Consensus 397 lL~~G 401 (1156)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-16 Score=176.19 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=66.9
Q ss_pred cccCCCChhHHH------HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 319 EMIRGISGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 319 ~~~~~LSGGqrq------Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
..+..||||||| |+++|++++.+|++|||||||+|||+..+..+++.|+++.. .+.++ +.++|+ .++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~v-i~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQV-ILVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEE-EEEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEE-EEEECh-HHHHHhC
Confidence 345679999999 67788888999999999999999999999999999998754 34454 446676 5788999
Q ss_pred CeEEEEc--CCe
Q 001108 393 DDIILLS--DGQ 402 (1156)
Q Consensus 393 D~iilL~--~G~ 402 (1156)
|+|++|. +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999985 454
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-18 Score=195.06 Aligned_cols=128 Identities=9% Similarity=-0.013 Sum_probs=95.6
Q ss_pred ceeE-EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHH
Q 001108 170 DVSG-VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 170 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
|++. .+++|++++|+||||||||||+++|+|.++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 4444 37899999999999999999999999999874 332 358999999888888 9999985
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
+... .+.... .+ ...+...|+.++ ....+..+ ..+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 4211 111000 00 112345566666 33333333 4699999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCH
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDS 356 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~ 356 (1156)
+||+++|++++.+|+|||||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-17 Score=185.15 Aligned_cols=185 Identities=14% Similarity=0.061 Sum_probs=112.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee-EEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
..+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|... +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999998775 57 66554432211000111111111110 111
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
.+++..+. + ...+....++.+++..++. +.+ ....
T Consensus 95 ~~~l~~~~--------------~------------------------~~~~~~~~~~~~l~~~~l~------i~~-~~~~ 129 (296)
T 1cr0_A 95 SDSLKREI--------------I------------------------ENGKFDQWFDELFGNDTFH------LYD-SFAE 129 (296)
T ss_dssp CHHHHHHH--------------H------------------------HHTHHHHHHHHHHSSSCEE------EEC-CCCS
T ss_pred ccccccCC--------------C------------------------CHHHHHHHHHHHhccCCEE------EEC-CCCC
Confidence 12221110 0 0011112233333322221 111 1235
Q ss_pred CChhH-HHHHHHHHHHhcCCccceeecCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCh--h-------
Q 001108 324 ISGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLRQNIHINSGTAVISLLQPA--P------- 386 (1156)
Q Consensus 324 LSGGq-rqRvsia~al~~~p~vllLDEpts---g---LD~-~~~~~i~~~L~~~~~~~~~t~ii~i~q~~--~------- 386 (1156)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|+ ++|.. .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHEE 207 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCcccccccccc
Confidence 88888 67777 999999999999999999 5 455 66678999999988755555555 55553 3
Q ss_pred -------------hHHhhcCeEEEEcCCeE
Q 001108 387 -------------ETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 387 -------------~~~~~~D~iilL~~G~i 403 (1156)
.+.+.||+|++|.+|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 68889999999998874
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-17 Score=213.01 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=112.8
Q ss_pred eEEeeeeeEEEeC-------CeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEE-EeccCCCC
Q 001108 881 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG-YCEQNDIH 952 (1156)
Q Consensus 881 ~~~L~~vs~~i~~-------Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~q~~~~ 952 (1156)
..+++||++.+++ |++++|+|||||||||||++| |... . .+ ++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~a-qiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MA-QMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HH-TTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------Hh-heeEEeccCcC-
Confidence 4589999999987 999999999999999999999 8643 1 12 245 8999753
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001108 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLD 1032 (1156)
.+||.|++.. + +++.+.... +.+.+|+|+++ +++|++++.+|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 3555554421 1 111111111 12457887775 99999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1033 EPTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1033 EPTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||+|+|+.. ...++.+|+.+.++ |+++|++||+++. +...+|++.++. |++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 9999999987 46688999999876 9999999999763 556688888764 5666
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-18 Score=194.78 Aligned_cols=158 Identities=9% Similarity=-0.000 Sum_probs=110.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~ 970 (1156)
+++|+++||+||||||||||+++|+|...+ . +|. +.++|++|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 899999999999999999999999996542 1 121 348999999988887 99999864211 1
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001108 971 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050 (1156)
Q Consensus 971 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l 1050 (1156)
..+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1122222345677888877 44443332 3699999999999999999999999999999998521 122
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1051 ~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+++. + .+|++.|+.+.......+|.+.+.+
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 3332 3 4566677655433345566555543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-16 Score=197.72 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=102.9
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc--------CCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 952 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~ 952 (1156)
..+++||++.+.+|++++|+|||||||||||++++ |..- +..+. . ++.+ +
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~-~--------------~~~~---d-- 706 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESA-E--------------VSIV---D-- 706 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEE-E--------------EECC---S--
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--ccccc-c--------------chHH---H--
Confidence 46899999999999999999999999999999993 3221 11110 0 1110 0
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEE
Q 001108 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIF 1030 (1156)
Q Consensus 953 ~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL--~~~p~ill 1030 (1156)
+++..+++.+ .. ..++|++++++..+|++| +.+|++||
T Consensus 707 --------------------------------~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 707 --------------------------------CILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp --------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred --------------------------------HHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 0011111111 11 135788888888888888 89999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEec
Q 001108 1031 MDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1156)
Q Consensus 1031 LDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g 1091 (1156)
|||||+|+|+.....+ +.+++.+.+ .|+|||++||+. ++.+.+|++..+.+ |++...+
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~ 806 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALT 806 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEe
Confidence 9999999999888777 777787776 499999999996 45688999888875 5665544
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-17 Score=181.55 Aligned_cols=155 Identities=9% Similarity=0.001 Sum_probs=97.6
Q ss_pred CceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCH
Q 001108 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 879 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3467999999999999999999999999999999999853 111222 2355689999985 6778999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL 1038 (1156)
.|++.+......... ......+.+.+.++.+ .+..+.. +..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876532211111 1111122234444433 2222333 24699999999988 5788899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001108 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066 (1156)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1066 (1156)
|.. ++++ .+.||++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2233 37899999996
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-17 Score=177.90 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=96.0
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeE-EEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
+|+++| +++|++++|+||||||||||+++|+|... +. .|.|.++|.++. |++|....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~-------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI-------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE--------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee--------
Confidence 689999 89999999999999999999999999754 33 689999887642 233321100
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
.. . +.+++.. ..| |++||++|..+|++|+||||| |+.
T Consensus 75 ------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 75 ------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 00 0 0122211 123 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+...+ ++. +..|.+|++++|+.+ ..+.+|+++.|..
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 86544 333 356999999999976 4677888877754
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-17 Score=179.58 Aligned_cols=140 Identities=15% Similarity=0.012 Sum_probs=86.6
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
..+.+|+|+||++++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3456999999999999999999999999999999999975 222232 1356799999975 777899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
+.|++.+............ .+. ..+...++.+ .+..+.. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-----------------~~~---------------~~~~~~L~~l--~~~~~~~-----~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHPDA-----------------FDN---------------DLMHRTLKNI--VEGKTVE-----VP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSGGG-----------------BCH---------------HHHHHHHHHH--HTTCCEE-----EC
T ss_pred HhHhhhhhccCCCCCCccc-----------------ccH---------------HHHHHHHHHH--HCCCCee-----cc
Confidence 9999877543221110000 000 0111222222 2333333 34
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHH
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~ 357 (1156)
.+|+||+||+.+ ++++.+|++++||||...+|..
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 699999999988 5788899999999998888763
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-17 Score=188.75 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=129.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++.++++..+.. +..+|+++ +.|.+|+++||+||||||||||+++|+|... +..|.|.+.|.+.
T Consensus 45 ~i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCH
T ss_pred CeeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccH
Confidence 3556666655531 23589999 9999999999999999999999999999766 3478898888642
Q ss_pred Ch----------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001108 935 KQ----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1156)
Q Consensus 935 ~~----------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~ 1004 (1156)
.. ..+.+.+.++.|.+. ...+.+.-.... ..+.+.....+ .+... .. ..
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~-~l--d~ 168 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG-KNVLL-MM--DS 168 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEE-EE--ET
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHH-HH--hh
Confidence 11 123456788887542 222222110000 00011111101 01000 00 01
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCcHHHHHhcCe
Q 001108 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1005 ~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~i~~~~d~ 1077 (1156)
+..||+|| ||+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||++ ...||+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 34699999 899999 688887 999999999999999999864 477 9999999987 356899
Q ss_pred EEEEecCcEEEEecCC
Q 001108 1078 LFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1078 v~~l~~Gg~~~~~g~~ 1093 (1156)
+++|.+ |+++..|++
T Consensus 236 v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 236 VRSILD-GHIVLTREL 250 (347)
T ss_dssp HHHHCS-EEEEBCHHH
T ss_pred eEEeeC-cEEEEeCCH
Confidence 999985 799988763
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-17 Score=174.23 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=93.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCC-----CeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-----GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-----~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
+-|++|++++|+||||||||||+++|+|.... +...+.+++++..... .+.+++++|...+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 47999999999999999999999999983221 1123567777653210 0112233333222211 2222221
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH-HHHHHHHHHHHhc-------CCCEEEEeCCC
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1035 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG-qrqrl~iA~aL~~-------~p~illLDEPT 1035 (1156)
+. ...+.+ +++.+..+.+++. +|++|+|||||
T Consensus 96 ----------------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 ----------------------------VA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ----------------------------EE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ----------------------------EE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 012333 3444566666665 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcH---HHHHhcCeEEEEecC
Q 001108 1036 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1036 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~i~~~~d~v~~l~~G 1084 (1156)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777777754 49999999994331 256678999999875
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-16 Score=194.66 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=96.7
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHH
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
+..+++||++++++|++++|+|||||||||||+++++..... . .|...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q------~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-Q------IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-H------HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-h------cCccccch--hhhhhHH---HHHHHhCChH
Confidence 356899999999999999999999999999999997531100 0 01000000 0011111 1111111111
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD 1039 (1156)
+++ .. +.+.+|+|++|++.|+++ +.+|++|||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 134689999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCcHHHHHhcCe
Q 001108 1040 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1040 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
+.....+. .+++.+.+ .|+|||++||+++ +.+++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99888886 77777765 5999999999975 4455554
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-15 Score=193.21 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=69.7
Q ss_pred CCCChhHHHHHHHHHHH--hcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 322 RGISGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al--~~~p~vllLDEptsgLD~~~~~~i-~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ +..++.+....+.+++ .++|+ .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl-~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCM-FATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEE-EEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEE-EEcCc-HHHHHHhccccee
Confidence 36899998888888888 999999999999999999998888 4556665542344544 46666 5777899999999
Q ss_pred cCCeEEEEcChhHH
Q 001108 399 SDGQIVYQGPRELV 412 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1156)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-16 Score=179.98 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=124.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc----------CccceEEEEcCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------VPQRTAAYISQH 234 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~----------~~~~~~~yv~Q~ 234 (1156)
..+|+++ +.+.+|++++|+||||||||||+++|+|...|+ .|.|.+.|++..+. ..++.+.+++|.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 4589999 999999999999999999999999999999998 89999998652110 123567888875
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+. ...+.+.-.... ..+ .+ .....| .+.
T Consensus 135 ~~-----~~~~r~~~~~~~----------~~~--------------------------------ae-~~~~~~----~~v 162 (347)
T 2obl_A 135 DR-----PALERMKAAFTA----------TTI--------------------------------AE-YFRDQG----KNV 162 (347)
T ss_dssp TS-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHTTT----CEE
T ss_pred CC-----CHHHHHHHHHHH----------HHH--------------------------------HH-HHHhcc----ccH
Confidence 42 222222111000 000 00 000011 111
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCe-----EEEEEecChhhHH
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT-----AVISLLQPAPETY 389 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t-----~ii~i~q~~~~~~ 389 (1156)
.+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++....+++ +|+..+|+.. .
T Consensus 163 l~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~ 230 (347)
T 2obl_A 163 LLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--D 230 (347)
T ss_dssp EEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--C
T ss_pred HHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--C
Confidence 10001234699999 899999 577776 99999999999999998754212344 5666677766 6
Q ss_pred hhcCeEEEEcCCeEEEEcChhHH
Q 001108 390 DLFDDIILLSDGQIVYQGPRELV 412 (1156)
Q Consensus 390 ~~~D~iilL~~G~iv~~G~~~~~ 412 (1156)
.+||++++|.+|+++..|+..++
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhhheEEeeCcEEEEeCCHHHc
Confidence 78999999999999999987765
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-15 Score=181.15 Aligned_cols=155 Identities=13% Similarity=0.095 Sum_probs=110.7
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHh
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (1156)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 5699999999999999999999999999987653 32 12455666531 01221110
Q ss_pred hhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHH
Q 001108 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331 (1156)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR 331 (1156)
+ .++ +. +. +...|+....+. .+..|||||+||
T Consensus 330 ~--------------------~g~----~~------------------~~-~~~~g~~~~~~~-----~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S--------------------WGM----DF------------------EE-MERQNLLKIVCA-----YPESAGLEDHLQ 361 (525)
T ss_dssp T--------------------TSC----CH------------------HH-HHHTTSEEECCC-----CGGGSCHHHHHH
T ss_pred H--------------------cCC----CH------------------HH-HHhCCCEEEEEe-----ccccCCHHHHHH
Confidence 0 000 00 01 123455444433 345699999999
Q ss_pred HHHHHHHhcCCccceeecCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEEecCh----------hhHHhhcCeEE
Q 001108 332 VTTGEMMVGPALALFMDEISTGLDSS-----TTFQIVNCLRQNIHINSGTAVISLLQPA----------PETYDLFDDII 396 (1156)
Q Consensus 332 vsia~al~~~p~vllLDEptsgLD~~-----~~~~i~~~L~~~~~~~~~t~ii~i~q~~----------~~~~~~~D~ii 396 (1156)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. .+.|+|+ ++|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 88888898887653 4555555 45554 66778999999
Q ss_pred EEcCCe
Q 001108 397 LLSDGQ 402 (1156)
Q Consensus 397 lL~~G~ 402 (1156)
+|.+|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-16 Score=195.43 Aligned_cols=133 Identities=20% Similarity=0.138 Sum_probs=97.2
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
..+++|||++ |++++|+|||||||||||++|+|.... ...|.+. + . .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHHH
Confidence 4689999998 999999999999999999999985310 0112211 1 1 1234677766 334455554
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---C
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1035 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL--~~~p~illLDEP---T 1035 (1156)
++. .++|+|+++++.+|++| +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 432 13799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCcHHHHHhc
Q 001108 1036 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075 (1156)
Q Consensus 1036 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~ 1075 (1156)
++||+.+. ..+++.|++ .|+|||++||+.+ ..+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 99999875 567787776 4899999999864 44443
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-16 Score=166.84 Aligned_cols=154 Identities=17% Similarity=0.116 Sum_probs=91.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---C-CceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHH
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---L-KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~---~-~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
+-+++|++++|+||||||||||+++|+|...+. . .-.|.|.+++.+.. ..+.++++.|...+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 579999999999999999999999999955441 0 01346666654310 01223333333222222 3333322
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
+. ...++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 11 1123332
Q ss_pred -HHHHHHHHHHhc-------CCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEecChh--
Q 001108 329 -KKRVTTGEMMVG-------PALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLLQPAP-- 386 (1156)
Q Consensus 329 -rqRvsia~al~~-------~p~vllLDEptsgLD~~~------------~~~i~~~L~~~~~~~~~t~ii~i~q~~~-- 386 (1156)
++.+..++.++. +|+++++||||++||+.. ..++++.|+++++..+.| |+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~t-vi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA-VFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCe-EEEEeecccCc
Confidence 223444444444 899999999999999842 236778888777654444 555677444
Q ss_pred --hHHhhcCeEEEEcCCe
Q 001108 387 --ETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 387 --~~~~~~D~iilL~~G~ 402 (1156)
.+...+|.++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 4888999999998753
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-16 Score=176.51 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cc--cceEEEeccCCCCCCCCCHHHHHH
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
+|++++|+||||||||||+++|+|... +..|+|.+.|.+.... .+ ++.++|++|++...|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 789999999999999999999999755 2368999999875321 11 245899999998888889999997
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHH
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDAR 1041 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illLDEPTsgLD~~ 1041 (1156)
+... +. .+ ..+++..|+.+..+.. ++..++||++|||+|+.+|+ +|.|| |+++
T Consensus 179 ~~~~-~~-~d----------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~---- 233 (304)
T 1rj9_A 179 AMKA-RG-YD----------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWLVLD-AVTG---- 233 (304)
T ss_dssp HHHH-HT-CS----------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC----
T ss_pred HHHh-CC-CC----------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH----
Confidence 6522 10 00 0122333333222221 45566899999999999999 44555 4444
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCC
Q 001108 1042 AAAIVMRTVRNTVDT-GRTVVCTIHQP 1067 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~-g~tvi~~~H~~ 1067 (1156)
..+++.++++.+. |.|+|++||+.
T Consensus 234 --~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 --QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp --THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred --HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4555666666543 89999999974
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-16 Score=177.03 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=84.8
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC-CCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCH
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv 958 (1156)
++.++++++|.| +|+|+||||||||+++|+|. .. +..| +.++|.+.......+.++|++|.+.....+|+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 457999999998 99999999999999999996 33 3466 77777665332223457899998887778899
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG- 1037 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsg- 1037 (1156)
.|+.-++..... .+..+..++.+.+. .+.. ..++|||||||+.+||+++ +|++||||++
T Consensus 81 ~Dt~g~~~~~~~-----~e~~~~l~~~l~~~------~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAINC-----RDCFKTIISYIDEQ------FERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHHHHH------HHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcCc-----HHHHHHHHHHHHHH------HHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 888877543210 00001111222111 2222 2358999999999988875 9999999984
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 001108 1038 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1068 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1068 (1156)
||+... +.++++... +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 555665443 789999999964
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-17 Score=176.95 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=111.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCC--CCCCHHHHHHHHHHh
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTIYESLLFSAWL 968 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~~Tv~e~l~~~~~l 968 (1156)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999986431 378999988766 5679988865431
Q ss_pred hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------
Q 001108 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1037 (1156)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq----rqrl~iA~aL~~~p~illLDEPTsg------- 1037 (1156)
..+ .....+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CCh----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111 111124466777888776655443 34689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 001108 1038 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1067 (1156)
Q Consensus 1038 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1067 (1156)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=142.52 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=68.9
Q ss_pred ccccCCCChhHHHHHHHH------HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 318 DEMIRGISGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia------~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
++.+..|||||||||+|| ++|+.+|+++||||||+|||+.+...+.+.|+++.. .+.++ +.++|+. ++.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~ti-iivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQV-ILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEE-EEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEE-EEEEChH-HHHHh
Confidence 455678999999999876 899999999999999999999999999999998654 34454 4466666 67899
Q ss_pred cCeEEEE--cCCeE
Q 001108 392 FDDIILL--SDGQI 403 (1156)
Q Consensus 392 ~D~iilL--~~G~i 403 (1156)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 46643
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-16 Score=197.49 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=110.2
Q ss_pred ceEeeceeEEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEE-EEcCCCC
Q 001108 165 LTILKDVSGVIKP-------GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDN 236 (1156)
Q Consensus 165 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~-yv~Q~d~ 236 (1156)
..+++|+++.+++ |++++|+|||||||||||++| |.+.+ ..++| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 3589999999987 999999999999999999999 88753 12344 8999652
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1156)
.+||.++|.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555421 0 01110000
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ-IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~-i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
.+...+|++++ ++++|++++.+|+++|||||++|+|+..... ++..|+.+.... +..++.++|+...+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 01124666665 4999999999999999999999999988544 667888775432 445555788888888899999
Q ss_pred EEEcCCeEE--EEcChhH
Q 001108 396 ILLSDGQIV--YQGPREL 411 (1156)
Q Consensus 396 ilL~~G~iv--~~G~~~~ 411 (1156)
.++ +|++. +.|++++
T Consensus 923 ~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECED 939 (1022)
T ss_dssp SEE-EEEEEEC-------
T ss_pred eee-cCeEEEEEecCccc
Confidence 887 58887 5565543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-15 Score=189.47 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=98.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
..+++|++++ ++|++++|+|||||||||||++|+|....+ . .|..+... ...++++.| ++..+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 999999999999999999999999852100 0 11111111 123555554 334445555
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1040 (1156)
++..+ .+.+|+|+++ +..+..++.+|++|||||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 44211 1236777764 4445557899999999999999998
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1041 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1041 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
.....+ +.+++.+.+ .|+|||++||+++ +.+.+|++..+.+
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n 744 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN 744 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE
Confidence 766654 788888877 4999999999975 4567776554543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-17 Score=170.00 Aligned_cols=158 Identities=20% Similarity=0.235 Sum_probs=105.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 256 (1156)
|++++|+||||||||||+++|+|.++ + +| |.++|....+.. .++.++|++|+. ... ++++ ++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hccc--
Confidence 78999999999999999999999987 6 78 999887764432 257799999963 111 1111 0000
Q ss_pred CchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccccccccCCCChhHHHHHH-H
Q 001108 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVT-T 334 (1156)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvs-i 334 (1156)
+ +.+. ..+..+|.. ...+|||||+++. +
T Consensus 66 ------------------~-------------------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 66 ------------------L-------------------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVL 95 (189)
T ss_dssp ------------------C-------------------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTT
T ss_pred ------------------c-------------------------------cCCccccccccceE-EEcchHHHHHHHHHH
Confidence 0 0000 011244433 3359999999984 4
Q ss_pred HH---HHhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE---EEecChhhHHhhcCeEEEEcCCeEEEE
Q 001108 335 GE---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVI---SLLQPAPETYDLFDDIILLSDGQIVYQ 406 (1156)
Q Consensus 335 a~---al~~~p~vllLDE--ptsgLD~~~~~~i~~~L~~~~~~~~~t~ii---~i~q~~~~~~~~~D~iilL~~G~iv~~ 406 (1156)
++ |+..+|+++|||| |+..+|......|.+.++ ...++|+ +++|..+ ..+.|+|..+.+|+|+.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-----~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-----TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-----CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-----CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 898899876555555553 2344553 3336553 356788888888888764
Q ss_pred c
Q 001108 407 G 407 (1156)
Q Consensus 407 G 407 (1156)
.
T Consensus 169 ~ 169 (189)
T 2i3b_A 169 T 169 (189)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-16 Score=168.75 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=103.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCC--CCCCHHHHHHHHhh
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMTVRETLAFSAR 252 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 252 (1156)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 489999987765 56899888765321
Q ss_pred hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH----
Q 001108 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ---- 328 (1156)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 328 (1156)
.. +. .+ ...+...++.+++.+..+.. ...+|+||
T Consensus 61 ~~--~~--------------------~~---------------~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--DA--------------------FD---------------LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG--GG--------------------BC---------------HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch--hh--------------------hh---------------HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 00 00 11233445666666544432 33589986
Q ss_pred HHHHHHHHHHhcCCccceeecCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsg-------LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q 383 (1156)
+||+++|++++.+|.++++||||++ ||+.....+.+.+++.....+.+++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999998876543345555544443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-16 Score=176.47 Aligned_cols=168 Identities=20% Similarity=0.197 Sum_probs=99.5
Q ss_pred Eeece-eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCC-CCceeE-EEEcCccCCCcCccceEEEEcCCCCCCCCC
Q 001108 167 ILKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPT-LKVSGT-VTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1156)
Q Consensus 167 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~-~~~~G~-V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1156)
.|+++ .+.+++|++++|+||||||||||++.|++.. +|+ +...|+ |.+++.+. + .++.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH-
Confidence 45555 6899999999999999999999999999987 443 011367 78887653 1 12446666665443332
Q ss_pred CHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 001108 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1156)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1156)
++.+|+.+...
T Consensus 195 ~v~~ni~~~~~--------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 EVLKHIYVARA--------------------------------------------------------------------- 205 (349)
T ss_dssp HHGGGEEEEEC---------------------------------------------------------------------
T ss_pred HHhhCEEEEec---------------------------------------------------------------------
Confidence 44444433210
Q ss_pred CCCChhHHHHHHHHHHHh-------cCCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEe
Q 001108 322 RGISGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLL 382 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~-------~~p~vllLDEptsgLD~~~------------~~~i~~~L~~~~~~~~~t~ii~i~ 382 (1156)
--|++|++++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+ ++|+.++
T Consensus 206 -~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~~ 283 (349)
T 1pzn_A 206 -FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTN 283 (349)
T ss_dssp -CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred -CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEEc
Confidence 01334444555554444 7899999999999999852 3566677777766444 4455566
Q ss_pred cChhhHHhhcCeEEEEcCCeEEEEcCh
Q 001108 383 QPAPETYDLFDDIILLSDGQIVYQGPR 409 (1156)
Q Consensus 383 q~~~~~~~~~D~iilL~~G~iv~~G~~ 409 (1156)
|........|++...+..|+++.++..
T Consensus 284 h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 284 QVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp ECC---------------CCCCCTTCS
T ss_pred ccccccccccCCccccCCcceEeecCc
Confidence 666665556667777778887766543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-16 Score=173.99 Aligned_cols=156 Identities=12% Similarity=0.152 Sum_probs=80.1
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC-CCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK-LDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1156)
++.+++++++.| +|+||||||||||++.|+|. ..|. +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6666 78 8888876643222356799999888888899
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|.||..|+..... .+. . ...++++.+. .+ ...+
T Consensus 80 v~Dt~g~~~~~~~-------------~e~---~--------------------~~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-------------RDC---F--------------------KTIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC---------------------------C--------------------TTHHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-------------HHH---H--------------------HHHHHHHHHH------HH-----HHHH
Confidence 9999877542110 000 0 0011111111 11 2345
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsg-LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~ 385 (1156)
++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ....+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 69999999999988875 9999999985 999873 44554432 2245555555554
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-15 Score=164.04 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=93.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.+|+|+| +++|++++|+|||||||||||++|+|.++|+ .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 3899999 8999999999999999999999999998762 169999998764311 11111122110
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 012210 112
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
|++||++|..+|+++++|||| |+.+...+++ . +. .+.++ ++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~v-l~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLV-FGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEE-EEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEE-EEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9888665443 2 22 34554 44555544 7788999988864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-16 Score=177.16 Aligned_cols=160 Identities=19% Similarity=0.158 Sum_probs=97.0
Q ss_pred eeee-eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC--CC--CeEEEE-EEEcCccCChhcccceEEEeccCCCCCCCCC
Q 001108 884 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYITGN-ITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 884 L~~v-s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 957 (1156)
|+.+ .+.|++|++++|+||||||||||++.|++.. .+ |...|. |+|++.+.. ..+.+++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 5555 5889999999999999999999999999854 21 111356 888886531 11234455554433221 2
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCEEE
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-------ANPSIIF 1030 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~-------~~p~ill 1030 (1156)
+.||+.+. .. .-|.+|+|++.++++++ .+|++|+
T Consensus 196 v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 22222110 00 02567788888888887 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1031 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1031 LDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
+||||+++|+.. ...+++.|+++++ .|+|||+++|... .....++...... ||+++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l 305 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHIL 305 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceE
Confidence 999999999852 3556666777654 5999999999865 3333334444443 34433
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-14 Score=157.89 Aligned_cols=151 Identities=21% Similarity=0.186 Sum_probs=101.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhh
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr 969 (1156)
.+++|++++|+||||||||||++.|++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 488999999999999999999999997432 2333 23433211 2346677655421 01111111 111
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HH
Q 001108 970 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1044 (1156)
Q Consensus 970 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs--gLD~~~---~~ 1044 (1156)
. .... ...+++++.+.+.+..+.. +..||+||++++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1121 2345678888877765543 346999998765 68889999999999999 999754 47
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc
Q 001108 1045 IVMRTVRNTV-DTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1045 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1068 (1156)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.1e-14 Score=165.06 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=63.3
Q ss_pred CCCChhHHHHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 322 RGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
..||||||||++||++|+ .+|+++||||||++||+.....+.+.|+++.. .++.++.++|+ ..+...||+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 359999999999999998 68999999999999999999999999987532 23445556666 567889999999
Q ss_pred Ec
Q 001108 398 LS 399 (1156)
Q Consensus 398 L~ 399 (1156)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-15 Score=159.70 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=104.7
Q ss_pred EeeeeeE-EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccc---eEEEeccCCCCCCCCCH
Q 001108 883 LLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR---ISGYCEQNDIHSPFVTI 958 (1156)
Q Consensus 883 ~L~~vs~-~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~q~~~~~~~~Tv 958 (1156)
.|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+.......+ ..|+.+|..... .+.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 5788885 899999999999999999999999997532 11234444333222111000 011111110000 0000
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCC
Q 001108 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTS 1036 (1156)
Q Consensus 959 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~--illLDEPTs 1036 (1156)
++.....++ .... ....|.++.++...+.....+|+ +|++||||+
T Consensus 88 ------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 88 ------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 000000000 0000 12359999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------HHHHHhcCeEEEEecC
Q 001108 1037 GL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1037 gL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~i~~~~d~v~~l~~G 1084 (1156)
++ |+.....+++.|+++++ .|+|||+++|+.. ..+...||++++|.+.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 99999999999999864 5999999999972 2367789999999864
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-14 Score=180.13 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=97.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..|++|||+.+++|++++|+|||||||||||+++++..-.. + .|. +.+... +.++.-+..+..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-----q---~g~----~vpa~~-~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-----Q---IGS----YVPAEE-ATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-----H---HTC----CBSSSE-EEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-----h---cCc----cccchh-hhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998642110 0 010 011110 1111111122222222
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
+++. .....+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 2111 112358
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE-EcCCe
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQ 402 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~-~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil-L~~G~ 402 (1156)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+....+.+ ++.++|+. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999998 8999999999999999999999987 5666665433444 44566664 55566665421 33444
Q ss_pred EE
Q 001108 403 IV 404 (1156)
Q Consensus 403 iv 404 (1156)
+.
T Consensus 814 ~~ 815 (918)
T 3thx_B 814 MG 815 (918)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-15 Score=166.94 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=100.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---------cceEEEEcCCCCCCCCCCHHHHH
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---------QRTAAYISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 247 (1156)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... ++.++|++|+....|.+||++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999987 8999999998654321 24589999998888889999999
Q ss_pred HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChh
Q 001108 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1156)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1156)
.++.. .+. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~-~~~---------------d~---------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------DL---------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHH-HTC---------------SE---------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHh-CCC---------------CE---------------------------EEecCCCCCCchH--------HHHHHH
Confidence 76531 100 00 0011122222111 114455
Q ss_pred HHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 001108 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384 (1156)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~ 384 (1156)
+|||++|||+++.+|+.++| .||+.+..++++.++.+....+.|+|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 68999999999999994444 455555555666666654434556555 4554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-15 Score=169.77 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=85.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhh
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr 969 (1156)
.+.+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......++++|.....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~---------------- 180 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHR---------------- 180 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTT----------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeecc----------------
Confidence 57899999999999999999999999965311 12444333322211 1111122333321110
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001108 970 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049 (1156)
Q Consensus 970 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1049 (1156)
..++..+ +||++|..+|++|++|||| |.++...+
T Consensus 181 ------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~--- 214 (356)
T 3jvv_A 181 ------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLA--- 214 (356)
T ss_dssp ------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHH---
T ss_pred ------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHH---
Confidence 0123222 9999999999999999999 76664443
Q ss_pred HHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1050 l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
.+.+.+|+|||+|+|+.+. .+.+||++.|..|
T Consensus 215 -~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 -LTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp -HHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred -HHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 3445679999999999874 4789999888543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-15 Score=187.99 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=110.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CCCceeEEEEcCccCCC------cCccceEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLDP-TLKVSGTVTYNGHDMDE------FVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~nG~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1156)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 6 8999999988521 12356799999999999999999999876432
Q ss_pred cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHH
Q 001108 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (1156)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (1156)
.+.. . .++| ++++.
T Consensus 125 ~~~~---------------------------------------------------~------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGE---------------------------------------------------G------------MGIS---HELIT 138 (608)
T ss_dssp HHCS---------------------------------------------------S------------SCCC---SCCEE
T ss_pred hcCC---------------------------------------------------c------------cccc---hHHHH
Confidence 1100 0 0011 11122
Q ss_pred HHHHHhcCCccceeecC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh----h---HHhhc-----CeE
Q 001108 334 TGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP----E---TYDLF-----DDI 395 (1156)
Q Consensus 334 ia~al~~~p~vllLDEp------tsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~----~---~~~~~-----D~i 395 (1156)
++......|+++|+||| |+|||+....++.+.++.+.....+.+++.++|+.. + +.+.. ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222357999999999 999999999999999998765455666666776654 2 22222 457
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001108 396 ILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1156)
+|+.++.++..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8889988888887665544
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-14 Score=181.12 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=95.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + ..+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4688999999 99999999999999999999999863 33 45431 1 11245777776 4555666
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 65542 14
Q ss_pred CChhHHHHHHHHHHH--hcCCccceeecC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecChhhHHhhc
Q 001108 324 ISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1156)
Q Consensus 324 LSGGqrqRvsia~al--~~~p~vllLDEp---tsgLD~~~~-~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1156)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.++|+ ++|+. +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~-~TH~~-~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLF-ATHYF-ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEE-ECCCH-HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEE-EeCCH-HHHHhh
Confidence 899999999999999 999999999999 999998875 568887765 3445554 56664 444454
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-16 Score=165.03 Aligned_cols=159 Identities=20% Similarity=0.186 Sum_probs=100.5
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~ 972 (1156)
|++++|+||||||||||+++|+|... ..| |.++|++..+ ...++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999653 246 7777766533 23456789999975 1111 111 01100
Q ss_pred CCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHH
Q 001108 973 EVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 1045 (1156)
Q Consensus 973 ~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl-~iA~---aL~~~p~illLDE--PTsgLD~~~~~~ 1045 (1156)
...+ ..+..++.. ...+|+|||+++ ++++ |+..+|+|||||| ||..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 011133332 235899999888 4454 5789999999999 899999876655
Q ss_pred HHHHHHHHHhCCCEEEE----EecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1046 VMRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1046 i~~~l~~~~~~g~tvi~----~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
+.++++ ...++|+ ++|+.+. .+.|++..+. +|+++...+-
T Consensus 128 l~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 128 VRQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp HHHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSS
T ss_pred HHHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChH
Confidence 555554 4445553 3398642 2456665554 4677776653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-15 Score=158.55 Aligned_cols=78 Identities=13% Similarity=0.015 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHHHhcCCc--cceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCh--------hhHHh
Q 001108 323 GISGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPA--------PETYD 390 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~--vllLDEptsgL--D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~--------~~~~~ 390 (1156)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+|+.++|.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999988888777778999 99999999888 9999999999999887644 45555567776 56889
Q ss_pred hcCeEEEEcCC
Q 001108 391 LFDDIILLSDG 401 (1156)
Q Consensus 391 ~~D~iilL~~G 401 (1156)
+||+|++|...
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-14 Score=179.57 Aligned_cols=136 Identities=14% Similarity=0.178 Sum_probs=93.6
Q ss_pred EEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC------hhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhC
Q 001108 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~ 970 (1156)
+||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998642 14899999997631 12456789999999999999999999987543211
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHH
Q 001108 971 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1044 (1156)
Q Consensus 971 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP------TsgLD~~~~~ 1044 (1156)
... .++| ++++.++++...+|+++|+||| |+|||+..+.
T Consensus 127 ~~~--------------------------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG--------------------------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS--------------------------------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc--------------------------------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0011 1122222333458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCCc
Q 001108 1045 IVMRTVRNTVDT--GRTVVCTIHQPS 1068 (1156)
Q Consensus 1045 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1068 (1156)
.+.++++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 678888999876
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=6e-15 Score=157.00 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=93.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC---CCeEEEEEEEcCc
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGY 932 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~g~ 932 (1156)
++++|+++.+.. .+|++ +.+.+|..++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 567888877741 25667 7889999999999999999999999999651 0123344332110
Q ss_pred c-C-ChhcccceEEEeccCCCCCCCCC---HHHHHHHHHHh-hC--------CCCCChHHHHHHHHHHHHHcCCCccc-c
Q 001108 933 P-K-KQETFARISGYCEQNDIHSPFVT---IYESLLFSAWL-RL--------SPEVDSETRKMFIDEVMELVELNPLR-Q 997 (1156)
Q Consensus 933 ~-~-~~~~~~~~~gyv~q~~~~~~~~T---v~e~l~~~~~l-r~--------~~~~~~~~~~~~v~~~l~~l~l~~~~-~ 997 (1156)
- . ....+....|+.... .+... .+..+...... +. +........+..+.+.++..++..+. .
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 0 0 000000001111000 00000 11111111100 00 00000111223344555666654321 2
Q ss_pred cccCCCCCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 001108 998 SLVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059 (1156)
Q Consensus 998 ~~~~~~~~~~LSgGqrqr-l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1059 (1156)
.. ...+|+||||| +.++++++.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 145 nK-----~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TK-----ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EC-----GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ec-----ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 22 23589999999 89999999999999999999999999999999999988766644
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7e-15 Score=172.23 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=94.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+.++++++++. ++.+++|++|+| +|+|+||||||||+++|+|........|++.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 366777776552 235899999998 999999999999999999975411112222222211
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
....+.++|++|++.+.+.+||.|++.|...... ... ...+.+.+ +. .++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~~~---~~~i~~~i------~~--------~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------SNC---WQPVIDYI------DS--------KFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------HH--------HHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhccc------hhh---HHHHHHHH------HH--------HHHHHHHH
Confidence 1123468999999888888999999877643210 000 11121111 11 25667788
Q ss_pred HHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1015 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1015 rl~iA~aL~~~p~---illLDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
|++|||+++.+|+ +|++|||| .|||+... ++++.+. .+.+||+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9999999999999 99999999 69998774 3344454 3788888888654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-13 Score=137.16 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1006 SGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
..||||||||++||++|+. +|++++|||||+|||+.+...+++.|+++.+ +.++|+++|+. .+.+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEE
Confidence 5699999999999999974 4699999999999999999999999999864 57899999985 467899999865
Q ss_pred e--cCcEEEEecC
Q 001108 1082 K--RGGQEIYVGP 1092 (1156)
Q Consensus 1082 ~--~Gg~~~~~g~ 1092 (1156)
. +|...++...
T Consensus 140 ~~~~g~s~~~~~~ 152 (173)
T 3kta_B 140 SMRDGVSKVVSLS 152 (173)
T ss_dssp EEETTEEEEEECC
T ss_pred EecCCEEEEEEEE
Confidence 4 4433444433
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-14 Score=176.96 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=100.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++|+++. ++|++++|+|||||||||||++|+|..... + .|..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-----q---~G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-----Y---IGSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-----T---TTCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-----h---cCcccch--hcccceeHHH---HHhhCCHH
Confidence 4589999999 999999999999999999999999974221 0 1211111 1134566655 45556666
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
+++..+. ..+
T Consensus 661 d~l~~~~----------------------------------------------------------------------stf 670 (800)
T 1wb9_A 661 DDLASGR----------------------------------------------------------------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhhh----------------------------------------------------------------------hhh
Confidence 6553211 135
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i-~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|+|+++ ++.+...+.+|+++|||||++|+|+.....+ +..++.+....+.++ +.++|+. +...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~v-l~~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT-LFATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE-EEECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeE-EEEeCCH-HHHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999998777765 566776654234444 4456665 45578998877778877
Q ss_pred EEEc
Q 001108 404 VYQG 407 (1156)
Q Consensus 404 v~~G 407 (1156)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-13 Score=163.15 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=70.3
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1006 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1006 ~~L-SgGqrqrl~iA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||++. +...||++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 357 999999999999999999 99999999999999999999999999987 899999999975 556799999997
Q ss_pred cC
Q 001108 1083 RG 1084 (1156)
Q Consensus 1083 ~G 1084 (1156)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-13 Score=149.77 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=98.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1156)
-+++|++++|+||||||||||++.|++.+. .|.+ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 489999999999999999999999998654 4555 3344321 1346788877542 1 1111 000
Q ss_pred cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHH
Q 001108 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (1156)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (1156)
. ... ..+ .....+.+++.+++.+..+. .+..||+||++++
T Consensus 88 ~-------------~~g--~~~-------------------~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 H-------------ALG--AHL-------------------SAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp H-------------HHH--TTS-------------------CHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred H-------------HHH--hhc-------------------ChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 0 000 000 00123445677777665443 3456999998876
Q ss_pred HHHHHhcCCccceeecCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 334 TGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 334 ia~al~~~p~vllLDEpts--gLD~~~~---~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+ +.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv-i~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI-VFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE-EEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE-EEEecCCCc
Confidence 57888999999999999 9997544 788888988876555554 446666544
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-14 Score=153.66 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=84.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHh
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l 968 (1156)
-..++|++++|+||||||||||+++|+|...+....|.|.+.+.+.... .++.++|++|++..++.+++..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~-------- 81 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRD-------- 81 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTT--------
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcC--------
Confidence 4578999999999999999999999999764213678999988765432 2345789988643322222100
Q ss_pred hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001108 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048 (1156)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1048 (1156)
+.++.+.. .+ .+.|-.+++ +.+++..++++||| ||+.++..+++
T Consensus 82 ----------------~f~E~~~~-------~~-----~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 82 ----------------AFLEHAEV-------FG-----NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp ----------------CEEEEEEE-------TT-----EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred ----------------HHHHHHHH-------Hh-----ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHH
Confidence 00000000 00 011111222 34566678999999 99999999998
Q ss_pred HHHHHHhCCCEEEEEecCCc
Q 001108 1049 TVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1049 ~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
.+. +|.||++++|+++
T Consensus 126 ~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 126 KMP----HARSIFILPPSKI 141 (219)
T ss_dssp HCT----TCEEEEEECSSHH
T ss_pred Hcc----CCEEEEEECCCHH
Confidence 876 5899999999875
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-13 Score=161.29 Aligned_cols=171 Identities=17% Similarity=0.129 Sum_probs=110.2
Q ss_pred eeeeeEEEeCCeE--EEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 884 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 884 L~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
|++||+++++|++ +||+||||||||||+++|+|..- .|.. +.... ....++.++|++|++.+++.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHTQ--PGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCCC--ccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 99999999999999999999742 1211 11111 11224578999999988888999998
Q ss_pred HHHHHHhhCCCCCCh----HHHHHHHHHHHHHc-CCC----cccccc----cC--CCCCCCCCHHHHHHHHHHHHHhcCC
Q 001108 962 LLFSAWLRLSPEVDS----ETRKMFIDEVMELV-ELN----PLRQSL----VG--LPGVSGLSTEQRKRLTIAVELVANP 1026 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~----~~~~~~v~~~l~~l-~l~----~~~~~~----~~--~~~~~~LSgGqrqrl~iA~aL~~~p 1026 (1156)
+.|+.... ..... +..+...++.++.. ++. ...+.. +. .|...+|+-.+ +.|+++|..++
T Consensus 103 ~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~ 177 (427)
T 2qag_B 103 VGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKV 177 (427)
T ss_dssp ECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCS
T ss_pred hhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCC
Confidence 87653210 00000 01223344455544 332 112221 11 12223567666 78999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 001108 1027 SIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1066 (1156)
Q Consensus 1027 ~illLDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1066 (1156)
+||++||||..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 178 ~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 178 NIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999986 77789999988764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-12 Score=135.49 Aligned_cols=153 Identities=18% Similarity=0.145 Sum_probs=98.1
Q ss_pred Eeeeee-EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.++++... . .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCH-HH
Confidence 466666 4799999999999999999999999998 221 2233443321 1 111 11
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHHHHHhcC-CCEEEEeCCCCCC
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1038 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~iA~aL~~~-p~illLDEPTsgL 1038 (1156)
+.- .... ...+. +++++.+.+ ...|++ +++++..+++++.+ |++|++||||+.+
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0010 01111 122222211 123444 46788899999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCcH------------HHHHhcCeEEEEecC
Q 001108 1039 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1039 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~i~~~~d~v~~l~~G 1084 (1156)
|+.. ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 24566667777654 8999999997641 356789999999864
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=127.69 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=69.4
Q ss_pred cCCCChhHHHHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 321 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +|.++|+ ..+.+.+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEE
Confidence 4579999999999999996 56799999999999999999999999988642 344 4445555 46789999998
Q ss_pred EE--cCCeE-EEEcChhHHHH
Q 001108 397 LL--SDGQI-VYQGPRELVLE 414 (1156)
Q Consensus 397 lL--~~G~i-v~~G~~~~~~~ 414 (1156)
.+ .+|.. +.....++..+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHH
Confidence 66 46754 44455554443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-13 Score=148.74 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=96.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH----HHHHH
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV----RETLA 248 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 248 (1156)
-..++|++++|+||||||||||+++|+|.++|+ ..+|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 467899999999999999999999999998863 3589999998765432 23568899996433332222 11111
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
+ .|+. .+.|
T Consensus 89 ~------------------------------------------------------------------~~~~--yg~~--- 97 (219)
T 1s96_A 89 V------------------------------------------------------------------FGNY--YGTS--- 97 (219)
T ss_dssp E------------------------------------------------------------------TTEE--EEEE---
T ss_pred H------------------------------------------------------------------Hhcc--CCCC---
Confidence 0 0110 0111
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcC
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1156)
+++ .+.++..++++||| ||+.++.++.+.+. .+.+|+.++|+..++.+ ++ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 222 34445567999999 99999999988775 24556657777666655 43 7777 678
Q ss_pred hhHHHHHHH
Q 001108 409 RELVLEFFA 417 (1156)
Q Consensus 409 ~~~~~~~f~ 417 (1156)
.+++...+.
T Consensus 155 ~e~i~~rl~ 163 (219)
T 1s96_A 155 EEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888766543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-13 Score=158.74 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=85.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++..++.+||.
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceeee
Confidence 45899999998 99999999999999999999865311 2222222111 11124689999988888899999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
+|+.|+...... .. .....+++ + ..+
T Consensus 94 Dt~g~~~~~~~~-~~-----------------------------------~~~i~~~i-~-----------------~~~ 119 (418)
T 2qag_C 94 DTPGFGDAVDNS-NC-----------------------------------WQPVIDYI-D-----------------SKF 119 (418)
T ss_dssp ECC-----------------------------------------------CHHHHHHH-H-----------------HHH
T ss_pred echhhhhhccch-hh-----------------------------------HHHHHHHH-H-----------------HHH
Confidence 998876421100 00 00011111 0 135
Q ss_pred ChhHHHHHHHHHHHhcCCc---cceeecCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001108 325 SGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~---vllLDEpt-sgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q 383 (1156)
+.++++|+.||++++.+|+ +|++|||| .|||+... .+++ .+. .+.++|+++++
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk---~L~--~~v~iIlVinK 176 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMK---RLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHH---HHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHH---HHh--ccCcEEEEEEc
Confidence 6677889999999999999 99999999 69998873 3333 332 24555555544
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-14 Score=152.87 Aligned_cols=154 Identities=15% Similarity=0.032 Sum_probs=94.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-cccceEEEeccCCCCCCCCCHHHHHHHHHHh
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l 968 (1156)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|+.. +..|+.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 378999999999999999999999999732 57889998653221 11234577777543 356888888765432
Q ss_pred hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001108 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048 (1156)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1048 (1156)
....... ..++.+++..++..+... +.+ +..+|+|++|+++++|++.++|+++ +|+.....+++
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~~-~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--ARP-LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CSC-EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CCC-eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1100000 000001111111111100 111 2359999999999999999999876 68888888877
Q ss_pred HHHHHHhCCCEEEEEec
Q 001108 1049 TVRNTVDTGRTVVCTIH 1065 (1156)
Q Consensus 1049 ~l~~~~~~g~tvi~~~H 1065 (1156)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665433334444443
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-16 Score=163.54 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=108.1
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE 973 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~ 973 (1156)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...|+++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999862 246788887543211 234667776544445678888776543221000
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC--CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHH
Q 001108 974 VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1045 (1156)
Q Consensus 974 ~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L--SgGqrqrl~iA~------aL~~~p~illLDEPTsgLD~~~~~~ 1045 (1156)
. ..+++.+......+. ...+ |+|++|++.++. +|+.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000110000000000 0124 788888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCCEEEEEecC-CcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1046 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1046 i~~~l~~~~~~g~tvi~~~H~-~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
++.++.+...+.+||.++|. ++ ++.+.||+++ +.|+++..|+.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~ 179 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAG 179 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC---
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecC
Confidence 88888876668899999998 76 5788899998 56788888764
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-13 Score=155.06 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=83.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1156)
...+|++++|+|||||||||||++|+|.++++ ..|.|...+.++ ++..+...+++.|....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~---------------- 179 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVH---------------- 179 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBT----------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeec----------------
Confidence 67899999999999999999999999998864 135665444332 22222223344442110
Q ss_pred cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHH
Q 001108 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (1156)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (1156)
. ..++-.+ +
T Consensus 180 ----------------------------------------------------------------~---~~~~~~~----~ 188 (356)
T 3jvv_A 180 ----------------------------------------------------------------R---DTLGFSE----A 188 (356)
T ss_dssp ----------------------------------------------------------------T---TBSCHHH----H
T ss_pred ----------------------------------------------------------------c---ccCCHHH----H
Confidence 0 0122221 8
Q ss_pred HHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCC
Q 001108 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1156)
Q Consensus 334 ia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1156)
||++|..+|+++++|||| |..+...+.+. +. .+.+ |++++|....+ +.+||++.|..|
T Consensus 189 La~aL~~~PdvillDEp~---d~e~~~~~~~~----~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMR---DLETIRLALTA----AE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHHHHHH----HH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHhhhCcCEEecCCCC---CHHHHHHHHHH----Hh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 999999999999999999 66664444433 32 4555 55556665555 889999998665
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-13 Score=155.89 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=93.1
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeE-EEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
+|++++ +++|++++|+||||||||||+++|+|... +. .|.|.+.+.+... ..++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 567766 78999999999999999999999999654 23 5888776655432 2334567777731
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+++. ...+ +.+|+.+|..+|++|++|||| |++
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 0124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
+.. .+++. +..|.+|++|+|..+ +.+.+||++.|
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 643 34443 356999999999965 56677776544
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-15 Score=175.54 Aligned_cols=170 Identities=15% Similarity=0.030 Sum_probs=97.3
Q ss_pred EeeceeEEEeC--CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCce----eEEEEcCccCCCcCccceEEEEcCCCCCCCC
Q 001108 167 ILKDVSGVIKP--GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS----GTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240 (1156)
Q Consensus 167 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1156)
+.+.|++.+++ |+.++|+||||||||||+++|+|.++|+ + |+|.+++..- ..+..+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-------------~~~~~~~~ 220 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-------------GDEQAMQY 220 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-------------SCTTSSCT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-------------CCcccCCh
Confidence 45689999999 9999999999999999999999999987 7 7766542100 00001111
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
... +++.+...- . .........++ .++.....++ .
T Consensus 221 ~~~-~~I~~~~q~------~----~~~~~t~~~nl-----------------------------~~~~~~~~~~-----~ 255 (365)
T 1lw7_A 221 SDY-PQMALGHQR------Y----IDYAVRHSHKI-----------------------------AFIDTDFITT-----Q 255 (365)
T ss_dssp TTH-HHHHHHHHH------H----HHHHHHHCSSE-----------------------------EEESSCHHHH-----H
T ss_pred hHH-HHHHHHHHH------H----HHHHHhccCCE-----------------------------EEEeCCchHH-----H
Confidence 122 334332100 0 00000000000 0000000011 1
Q ss_pred cCCCChhHHHHHHHHHHHh-cCCccceeec---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHh
Q 001108 321 IRGISGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~-~~p~vllLDE---pt------sgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1156)
...+|+|+++|..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++ +.++ .+..+
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~-~~~~r 333 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP-SYLDR 333 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS-SHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC-CHHHH
Confidence 1236677788888887775 5899999999 65 5899999999999998765533445554 4555 35556
Q ss_pred hcCeEEEEc
Q 001108 391 LFDDIILLS 399 (1156)
Q Consensus 391 ~~D~iilL~ 399 (1156)
++|.+.+++
T Consensus 334 ~~~~i~~i~ 342 (365)
T 1lw7_A 334 YNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-14 Score=148.47 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=52.8
Q ss_pred HHHHHcCCcccccccccccccCCCChhHHHH-HHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001108 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (1156)
Q Consensus 301 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR-vsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~ 371 (1156)
..++..+++.. .++++ ...+|+||||| +..+++++.+|.++++|||||++|.....++++.|.+...
T Consensus 131 ~~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34555666532 22332 33599999999 8899999999999999999999999999999999987653
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-15 Score=154.26 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=106.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 257 (1156)
|++++|+||||||||||+++|++ +. +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 68999999999999999999997 33 68999998765332 234677776544455678888776532110
Q ss_pred chhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc---cccCCC--ChhHHHHH
Q 001108 258 TRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD---EMIRGI--SGGQKKRV 332 (1156)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqrqRv 332 (1156)
. . +-....+...+. +..+.+ |+|+++++
T Consensus 71 ----------~-~------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------L-A------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------H-T------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------h-c------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 0 000000100000 001224 88998888
Q ss_pred HHHH------HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC-hhhHHhhcCeEEEEcCCeEEE
Q 001108 333 TTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP-APETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 333 sia~------al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~-~~~~~~~~D~iilL~~G~iv~ 405 (1156)
.++. +++.+++...+|+ +||+..... ++.++.+.. .+.++ +..+|. ..++.+.+|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~i-i~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYF-YNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSE-EECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEE-EeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8899999888884 899988777 777776532 33444 445555 678999999999 9999999
Q ss_pred EcChhHH
Q 001108 406 QGPRELV 412 (1156)
Q Consensus 406 ~G~~~~~ 412 (1156)
.|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9988654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-12 Score=149.75 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=93.9
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEc-CCCCC--CCCCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYIS-QHDNH--IGEMT 242 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 242 (1156)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 459999999999999999999999999999999999997 999999985311111 346788998 65432 23444
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
++++
T Consensus 241 ~~~~---------------------------------------------------------------------------- 244 (361)
T 2gza_A 241 AATL---------------------------------------------------------------------------- 244 (361)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 4444
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
|+.++..+|+.+++||+.. ..+.+.|+.+. ....+.+.++|.. .....+||++.|..|.
T Consensus 245 -----------i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~-~g~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 245 -----------LRSCLRMKPTRILLAELRG-------GEAYDFINVAA-SGHGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp -----------HHHHTTSCCSEEEESCCCS-------THHHHHHHHHH-TTCCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred -----------HHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh-cCCCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 4444555778999999985 23444555432 2344556655543 4778899999988764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-13 Score=139.02 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=66.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++++|+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 34899999999999999999999999999999999999 77 899999998764211111 2899987777 89999
Q ss_pred HHHHH
Q 001108 245 ETLAF 249 (1156)
Q Consensus 245 E~l~f 249 (1156)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-12 Score=151.45 Aligned_cols=137 Identities=18% Similarity=0.146 Sum_probs=99.4
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-hcccceEEEec-cCCCCCCCCCHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCE-QNDIHSPFVTIYE 960 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~-q~~~~~~~~Tv~e 960 (1156)
+++++|+.+++|++++|+||||||||||+++|+|... +..|.|.++|...-. ...++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 4599999999999999999999999999999999876 347999999853211 12456688887 54321
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1040 (1156)
+++++..++-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222356667777778999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1041 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2355667666544458899999975 56789999988875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.6e-13 Score=139.19 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=88.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHHHHHHHhh
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSAR 252 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 252 (1156)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +.+||.+++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 44 799999997653221 1234677877543 45788888876542
Q ss_pred hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHH
Q 001108 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332 (1156)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRv 332 (1156)
.. ....... + ++.++..+++..... . +..+..+|+|++||+
T Consensus 78 ~~------------~~~~~~~-~-----------------------~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RY------------AKEGYFV-I-----------------------LDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HH------------HHTSCEE-E-----------------------ECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHH
T ss_pred HH------------hccCCeE-E-----------------------EeccCcHHHHHHHHh--c-CCCeEEEEecCCHHH
Confidence 11 0000000 0 000000011111110 0 111235999999999
Q ss_pred HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001108 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 333 sia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~ 368 (1156)
.++|++.++|+++ +|+.....+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 588776666665543
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.8e-14 Score=143.70 Aligned_cols=112 Identities=19% Similarity=0.116 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------cc-ceEE----EEcCCCCCCCCCCHHHHH
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQ-RTAA----YISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 247 (1156)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875444799999998854432 12 2455 788865544 100
Q ss_pred HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChh
Q 001108 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1156)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1156)
+.. +. .. ..+.+++. .|+ .+||.|++ +||||
T Consensus 77 ---------~~~-----~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 ---------VSE-----EE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp ---------CCH-----HH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred ---------CCh-----hh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 000 00 00 01223333 134 57999997 59999
Q ss_pred HHHHHHHHHHHhcCCccc
Q 001108 328 QKKRVTTGEMMVGPALAL 345 (1156)
Q Consensus 328 qrqRvsia~al~~~p~vl 345 (1156)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999874
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=132.27 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=57.0
Q ss_pred CChhH--HHHHHHHHHHhcC-CccceeecCCCCCCHHH--------HHHHHHHHHHHHHhcCCeEEEEEecChh------
Q 001108 324 ISGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSST--------TFQIVNCLRQNIHINSGTAVISLLQPAP------ 386 (1156)
Q Consensus 324 LSGGq--rqRvsia~al~~~-p~vllLDEptsgLD~~~--------~~~i~~~L~~~~~~~~~t~ii~i~q~~~------ 386 (1156)
.|+++ ++++..+++++.. |+++++||||+++|... ...+++.|+++++..+.++|+ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899985 99999999999999743 245666788877655666555 555543
Q ss_pred -------hHHhhcCeEEEEcCC
Q 001108 387 -------ETYDLFDDIILLSDG 401 (1156)
Q Consensus 387 -------~~~~~~D~iilL~~G 401 (1156)
.+...+|.|++|...
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-11 Score=140.70 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=67.8
Q ss_pred CCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 1006 SGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 1006 ~~LSgGqrqrl------~iA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 57999999988 567889999 99999999999999999999999999874 4579999999975 56789999
Q ss_pred EEEecCc
Q 001108 1079 FLMKRGG 1085 (1156)
Q Consensus 1079 ~~l~~Gg 1085 (1156)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998544
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-13 Score=150.03 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhh-
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSAR- 252 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~- 252 (1156)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.++.|+..+++..|+.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998876 8999888754321 112335566777778888899999987542
Q ss_pred -------hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 253 -------CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 253 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
+.+.....+ +....... ..++.-+ +. +. -.+..+ . .+.++.+..||
T Consensus 102 ~~~~~~il~g~~~~~~---~~~~l~~~--~~~~~vi--~L--------~~--~~~~~l-----~-----r~~~r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLG---QAEALDKI--CEVDLVI--SL--------NI--PFETLK-----D-----RLSRRWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSHH---HHHHHHTT--CCCCEEE--EE--------EC--CHHHHH-----H-----HHHTEEEETTT
T ss_pred cCCCeEEEECCCCCHH---HHHHHHhh--cCCCEEE--EE--------EC--CHHHHH-----H-----HHHcCCCcCCC
Confidence 111111100 00000000 0000000 00 00 000000 0 11123344699
Q ss_pred hhHHHHHHHHHHH-hcCCccceee----cCCCCCCHHHHHHHHHHHHHHHH
Q 001108 326 GGQKKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLRQNIH 371 (1156)
Q Consensus 326 GGqrqRvsia~al-~~~p~vllLD----EptsgLD~~~~~~i~~~L~~~~~ 371 (1156)
| |+ +++ +.+|++++|| |||++||..+...+.+.|+.+..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 8 55 677 9999999999 99999999999999998887643
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-14 Score=164.93 Aligned_cols=166 Identities=8% Similarity=0.013 Sum_probs=95.6
Q ss_pred eeeeeEEEeC--CeEEEEEcCCCCcHHHHHhhhcCCCCCCeEE----EEEEEcCccCChhcccceEEEeccCCCCCCCCC
Q 001108 884 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1156)
Q Consensus 884 L~~vs~~i~~--Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~----G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~T 957 (1156)
.+.|++.|++ |++++|+||||||||||+++|+|... +.. |.+.+++... ..+.......
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~~ 222 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYSD 222 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTTT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChhH
Confidence 4578899999 99999999999999999999999765 345 5555431100 0000001111
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCC--CcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC-
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE- 1033 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l--~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~-~~p~illLDE- 1033 (1156)
. +++.+...- .......+.+.+.+ .+..+.. ...+|+|++|+..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 1 223221100 00000000000000 0000111 1135667778888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1034 --PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1034 --PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
|+ +++|+..+..+.+.|+++.+ .|.+||+++|. + +....++++.+++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 68999999999999988754 48999999975 3 3455666655553
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-15 Score=169.43 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCCCC------CeEEEEEEEcCccCChh------------------cccceEEEe---c
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGNITISGYPKKQE------------------TFARISGYC---E 947 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 947 (1156)
++++|+|+||||||||++.|.|...+ .+..|+|.++|.++... .+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986421 13468888888765321 123345666 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hh-hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001108 948 QNDIHSPFVTIYESLLFSA--WL-RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1024 (1156)
Q Consensus 948 q~~~~~~~~Tv~e~l~~~~--~l-r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~ 1024 (1156)
|+..+.+..++.|+..++. .+ +.............++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 6555555666666654320 00 00000000000011122333344444443332 589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1025 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 999 67888888874 6899999999753
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-14 Score=155.03 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhc---CCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHh-
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL- 968 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l- 968 (1156)
++++++|+||||||||||+++|+ |... +..|++.++|.+... .....+++++|+..+.+..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 9765 556777777654321 1223345567777777888999998764321
Q ss_pred h-----CCCCCChHHHHHHHHHHHHH--cC------------CCcccccccCCCCCCCCCHHHHHHHHHHHHH-hcCCCE
Q 001108 969 R-----LSPEVDSETRKMFIDEVMEL--VE------------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL-VANPSI 1028 (1156)
Q Consensus 969 r-----~~~~~~~~~~~~~v~~~l~~--l~------------l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL-~~~p~i 1028 (1156)
. .. ...... ..++.+.+. ++ +..+.++. +..||| |+ ++| +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 0 00 011111 112222211 12 11122222 235888 55 677 899999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 001108 1029 IFMD----EPTSGLDARAAAIVMRTVRNTVDTG 1057 (1156)
Q Consensus 1029 llLD----EPTsgLD~~~~~~i~~~l~~~~~~g 1057 (1156)
++|| |||+|||..+...+++.++++.+++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999 9999999999999999999886553
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=134.20 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=84.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCC--CCC---CeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
+-+++|++++|+||||||||||++.|++. ... +...|.+++++.... .......
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 46899999999999999999999999983 221 112466777765420 0000000
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCH
Q 001108 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSGLDA 1040 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr-l~iA~aL~--~~p~illLDEPTsgLD~ 1040 (1156)
....+ .... +++++.+.+ ....+..+... +.-+.+++ .+|++|++||||+.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 00000 0111 112221111 01245444332 33333444 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcHHHH-------------------HhcCeEEEEecC
Q 001108 1041 R-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIF-------------------EAFDELFLMKRG 1084 (1156)
Q Consensus 1041 ~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~-------------------~~~d~v~~l~~G 1084 (1156)
. + ...+++.|+++++ .|+|||+++|.... .. ..+|.+++|.++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~-~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec-CCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 3455566666654 49999999996542 21 168999999864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-12 Score=153.07 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=101.6
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------c--ccceEEEeccCCCCCC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 954 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~gyv~q~~~~~~ 954 (1156)
-++|||++++|++++|+|+||||||||+++|+|... +..|.|.++|.+.... . .++.++|++|+..+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 368899999999999999999999999999999754 2358899987665321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCC-EEEEe
Q 001108 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMD 1032 (1156)
Q Consensus 955 ~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~-~~p~-illLD 1032 (1156)
.+|+++++.+... +. .++ -+++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~-~~-~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-RN-IDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHH-TT-CSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHh-cC-CCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8899999988642 11 000 0122222211111 12223457888888764 4574 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1065 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1065 (1156)
.||+|.|... .++.+.+ -|.|.|++||
T Consensus 420 DattGq~al~------~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVS------QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHH------HHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHHH------HHHHHHhhcCCCEEEEEc
Confidence 5888866542 2333332 4889999999
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-12 Score=149.60 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=102.7
Q ss_pred eeceeEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 168 LKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 168 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
|++||+.+++|++ ++|+||||||||||+++|+|..- .|...... .....++.++|++|++.+++.+||.|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~---~~~~~~~~i~~v~Q~~~l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHT---QPGVQLQSNTYDLQESNVRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C---CSSCEEEEEEEEEEC--CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCC---CccceEeeEEEEeecCccccccchhh
Confidence 9999999999999 99999999999999999999841 23211100 01112357899999988888999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-CCc----cccccccc---
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLD----VCADTMVG--- 317 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~dt~vg--- 317 (1156)
|+.|+.... .......+. .+ .....+.+|... ++. ...|+.|.
T Consensus 102 ~~~~g~~~~----~~~~~~~i~---------------~~----------i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v 152 (427)
T 2qag_B 102 TVGFGDQIN----KEDSYKPIV---------------EF----------IDAQFEAYLQEELKIRRVLHTYHDSRIHVCL 152 (427)
T ss_dssp EECCCC-CC----HHHHSHHHH---------------HH----------HHHHHHHHHHHC--CCCCCCCSCC--CCEEE
T ss_pred hhhhhhccc----cchhhhHHH---------------HH----------HHHHHHHHHHHHHhhhhhhcccccccccEEE
Confidence 997764211 000000000 00 111223333333 433 22233211
Q ss_pred ---ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 001108 318 ---DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380 (1156)
Q Consensus 318 ---~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~ 380 (1156)
.....+|+-.+ +.|+++|..+++|+++|+|+..|.+.....+.+.+++-... .+..|+.
T Consensus 153 ~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~ 214 (427)
T 2qag_B 153 YFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQ 214 (427)
T ss_dssp EEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCC
T ss_pred EEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEe
Confidence 01113566665 78999999999999999999999998888888888763332 3444443
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.16 E-value=6.5e-12 Score=143.57 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=84.5
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc-CccCChhcccceEEEeccCCCCCCCCCHHHHH
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 962 (1156)
++++++. .+|++++|+||||||||||+|+|+|.... +..|+|.++ |.+.. .+..+.++|++|+..+++..||+|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 3444443 37999999999999999999999997541 357888887 65542 23456789999998888888888841
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1022 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL 1022 (1156)
+ ...+.++..+.+.++++.+++.++.+... .+|| ||+||++||+++
T Consensus 283 -----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 -----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 12344555667788999999988887764 4699 999999999864
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.14 E-value=6.1e-11 Score=140.72 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1006 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++..+|.++|+|||++ ...+.||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 58999999999999999999999999999866688999999995 467889999998
Q ss_pred ec
Q 001108 1082 KR 1083 (1156)
Q Consensus 1082 ~~ 1083 (1156)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-11 Score=131.71 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=33.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCC--CCceeEEEEcCc
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPT--LKVSGTVTYNGH 217 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~--~~~~G~V~~nG~ 217 (1156)
+-+++|++++|+||||||||||++.|++ .+++. ..-.|.+.+++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 5689999999999999999999999999 44431 001455665553
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8e-12 Score=144.95 Aligned_cols=131 Identities=18% Similarity=0.267 Sum_probs=92.6
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1156)
+|++++ +++|++++|+|||||||||||++|+|.++++ .+|+|.+.|.++. ...+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 677776 7999999999999999999999999998762 1699988776653 33345677787731
Q ss_pred HHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCCh
Q 001108 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (1156)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (1156)
+|++ ...+
T Consensus 191 -----------------------------------------------------------~g~~-----------~~~~-- 198 (372)
T 2ewv_A 191 -----------------------------------------------------------VGED-----------TKSF-- 198 (372)
T ss_dssp -----------------------------------------------------------BTTT-----------BSCS--
T ss_pred -----------------------------------------------------------cCCC-----------HHHH--
Confidence 0010 0123
Q ss_pred hHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 327 GqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+.+ |++++|. .++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~~-vi~t~H~-~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGHL-VFGTLHT-NTAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTCE-EEECCCC-CSHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCCE-EEEEECc-chHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3433 22 3444 4555555 44788888887664
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-12 Score=151.82 Aligned_cols=170 Identities=13% Similarity=0.127 Sum_probs=97.0
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
-++|+++++.|+.++|+|+|||||||||++|+|... .+.+++... ....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 379999999999999999999999999999998642 234443221 2223555555431 0011111000
Q ss_pred HHHHhhCCCCCChHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 964 FSAWLRLSPEVDSETRK--MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 964 ~~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+...............+ +.++.++..+++. +.. ...||+|++|++.+|++|+.+|.||+| +++|+.
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000001111000 0111223333332 111 246999999999999999999999999 999997
Q ss_pred HHHHHHHHHHH-HHhCCCEEEEEe-cCCcHHHHHhcCeEE
Q 001108 1042 AAAIVMRTVRN-TVDTGRTVVCTI-HQPSIDIFEAFDELF 1079 (1156)
Q Consensus 1042 ~~~~i~~~l~~-~~~~g~tvi~~~-H~~~~~i~~~~d~v~ 1079 (1156)
.+. .++.+++ +.+.|.+++.+| |... .+.++++.+.
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA~~g~-gi~eL~~~i~ 320 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSALTGA-GLPALKEALH 320 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCTTTCT-THHHHHHHHH
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEECCCcc-CHHHHHHHHH
Confidence 763 4444444 444577776555 4433 4666665543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.12 E-value=6.6e-12 Score=143.52 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=79.2
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCceeEEEEc-CccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYN-GHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~n-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4555554 4799999999999999999999999998 87 8999987 765432 23467999999988888889988
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
+ +. .+.. . .+ ....+.++++.+|+....|.. ..++|
T Consensus 281 ~---~l--~~l~-~----~e-----------------------------~~~~~~e~l~~~gl~~f~~~~-----~~~lS 316 (358)
T 2rcn_A 281 F---GL--WHLE-P----EQ-----------------------------ITQGFVEFHDYLGHCKYRDCK-----HDADP 316 (358)
T ss_dssp C---CC--CCCC-H----HH-----------------------------HHHTSGGGGGGTTCSSSTTCC-----SSSCT
T ss_pred h---hh--cCCC-H----HH-----------------------------HHHHHHHHHHHcCCchhcCCC-----cccCC
Confidence 4 21 1100 0 00 011233456677887666544 34699
Q ss_pred hhHHHHHHHHHHH
Q 001108 326 GGQKKRVTTGEMM 338 (1156)
Q Consensus 326 GGqrqRvsia~al 338 (1156)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999865
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-13 Score=156.68 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=96.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC--------CCCCCceeEEEEcCccCCCcCc------------------cceEEEE
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKL--------DPTLKVSGTVTYNGHDMDEFVP------------------QRTAAYI 231 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~nG~~~~~~~~------------------~~~~~yv 231 (1156)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 455 8999999988754321 1335555
Q ss_pred ---cCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHH---HHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHH
Q 001108 232 ---SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL---ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305 (1156)
Q Consensus 232 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 305 (1156)
+|+..+++..+|.||+.++... ...... ...... ..++.++..
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~~~~~------------------------~~l~~~l~~ 129 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVLCQR------------------------YLLDGVIAL 129 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHHHHHH------------------------EEEEEEEEE
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCccccCe------------------------EEECCEEEE
Confidence 4655555667777776543100 000000 000000 000111222
Q ss_pred cCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001108 306 LGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (1156)
Q Consensus 306 lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~ 385 (1156)
+++.+..+... .+|||||||+..+++++..|+++ ||| ..+.+.|+++. .+.+ |+.++|..
T Consensus 130 vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~-ii~~sh~~ 189 (318)
T 1nij_A 130 VDAVHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAP-VYTVTHGD 189 (318)
T ss_dssp EETTTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSC-EEECCSSC
T ss_pred EEHHHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCe-EEEecccC
Confidence 33333322221 48999999999889999999987 998 67777777652 3344 44455544
Q ss_pred hhHHhhc
Q 001108 386 PETYDLF 392 (1156)
Q Consensus 386 ~~~~~~~ 392 (1156)
.++..++
T Consensus 190 ~~~~~l~ 196 (318)
T 1nij_A 190 IDLGLLF 196 (318)
T ss_dssp CCGGGGS
T ss_pred CCHHHHh
Confidence 4444444
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-12 Score=131.04 Aligned_cols=78 Identities=23% Similarity=0.092 Sum_probs=64.6
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
+.++++|||++++|++++|+||||||||||+++|+|.. + ..|+|.++|.++......+ .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999976 3 4799999998764321111 3789988888 899999
Q ss_pred HHHH
Q 001108 961 SLLF 964 (1156)
Q Consensus 961 ~l~~ 964 (1156)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.6e-12 Score=143.32 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=94.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cccce--EEEeccCCCCCCCCCHHHH
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFARI--SGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~q~~~~~~~~Tv~e~ 961 (1156)
.++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... .+++. +.|++|...+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999654 3468899998875421 11223 4599999988899999999
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+.+...... +. -+++..++.+..+. =.++.-.|++++..++.+++||.+|. .
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t~-~--- 255 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALAG-N--- 255 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGGT-T---
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHHH-H---
Confidence 987532110 00 01122222221111 12233348899988888888995554 3
Q ss_pred HHHHHHHHHHHHH-hCCCEEEEEecC
Q 001108 1042 AAAIVMRTVRNTV-DTGRTVVCTIHQ 1066 (1156)
Q Consensus 1042 ~~~~i~~~l~~~~-~~g~tvi~~~H~ 1066 (1156)
.+++.++.+. ..|.|+|++||.
T Consensus 256 ---~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 ---AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ---HHHHHHHHHHHHSCCCEEEEECG
T ss_pred ---HHHHHHHHHHHhcCCCEEEEeCc
Confidence 4445555554 348999999995
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-11 Score=119.75 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=37.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q 001108 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQP 1067 (1156)
Q Consensus 1023 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~ 1067 (1156)
+.+|++|+||||++ +|...+..+.+++..+.++|++ ||+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6665588899999988877888 88899864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.9e-12 Score=140.37 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=83.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (1156)
+++.+++|.||+|||||||.+.|++.+.+. | .. .+.+.+|+|++.+++ .++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~~------~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------GG------EKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------GG------GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------CC------CceEEEeccccccCC-hHHHHHHhccccccc
Confidence 367899999999999999999999998652 2 10 234666799887775 588999987631000
Q ss_pred CCchhhHhHHHHHHHHhcCCCCC-CChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc------cccccccCCCChhH
Q 001108 256 VGTRYEMLTELARREKAAGIKPD-PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT------MVGDEMIRGISGGQ 328 (1156)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~~~LSGGq 328 (1156)
.-. ..+ .|+ .|.+ .....++.+.. ..+| .+. .+...+||||
T Consensus 92 l~~-------------~~g-~p~a~d~~---------------~l~~~l~~l~~--g~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQ-------------GRG-LPGTHDMK---------------LLQEVLNTIFN--NNEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGS-------------SSC-STTSBCHH---------------HHHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhh-------------hcc-CcchhHHH---------------HHHHHHHHhhc--cCccccCcceeec-cCccccCCcc
Confidence 000 000 011 1111 11223444422 2122 122 2335799999
Q ss_pred HHHHHHH--HHHhcCCccceeecCCCCCCHHH
Q 001108 329 KKRVTTG--EMMVGPALALFMDEISTGLDSST 358 (1156)
Q Consensus 329 rqRvsia--~al~~~p~vllLDEptsgLD~~~ 358 (1156)
+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999997 555 899999999999999864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-11 Score=143.48 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=69.3
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc------C---ccceEEEEcCCCCCC
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF------V---PQRTAAYISQHDNHI 238 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~------~---~~~~~~yv~Q~d~~~ 238 (1156)
-+++|+.+++|++++|+||||||||||+++|+|++.++ +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999877 89999987765332 1 135689999998888
Q ss_pred CCCCHHHHHHHHh
Q 001108 239 GEMTVRETLAFSA 251 (1156)
Q Consensus 239 ~~lTV~E~l~f~~ 251 (1156)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998864
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-11 Score=140.23 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=62.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---------cceEEEEcCCCCCCCCCCHHH
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---------QRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
.++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... +..+.|++|.....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3789999999999999999999999999887 8999999988654321 123569999988899999999
Q ss_pred HHHHHh
Q 001108 246 TLAFSA 251 (1156)
Q Consensus 246 ~l~f~~ 251 (1156)
|+.++.
T Consensus 203 ~l~~~~ 208 (328)
T 3e70_C 203 AIQHAK 208 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.9e-13 Score=135.77 Aligned_cols=138 Identities=15% Similarity=0.208 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCCCC-CeEEEEEEEcCccCC------hhccc-ceEE----EeccCCCCCCCCCHHHHH
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKK------QETFA-RISG----YCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~q~~~~~~~~Tv~e~l 962 (1156)
++++|+|+||||||||+++|+|...+ |...|.|.++|.++. ...++ +.+| +++|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 58999999999999999999996431 233799999997732 12333 3456 788876543
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1034 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~-l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~il-------lLDEP 1034 (1156)
++. ... +....++++++. +. + .|..++. +||||||||++|||+++.+|+|. .=|.|
T Consensus 74 -----i~~---~~~-~~~a~l~~~i~~~l~--g-~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 74 -----IRR---VSE-EEGNDLDWIYERYLS--D-YDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----EEE---CCH-HHHTCHHHHHHHHTT--T-CSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----Eec---CCh-hhhhCHHHHHHhhCC--C-CCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 110 001 111124455554 43 2 3555553 59999999999999999999762 23554
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 001108 1035 TSG---LDARAAAIVMRTVRNTVDTG 1057 (1156)
Q Consensus 1035 Tsg---LD~~~~~~i~~~l~~~~~~g 1057 (1156)
..+ +|......+.+.|.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 23344456666665555554
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-13 Score=153.37 Aligned_cols=164 Identities=12% Similarity=0.118 Sum_probs=103.7
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cccceEEEeccCCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHSP 954 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~~~~ 954 (1156)
.+|+++|+++++|++++|+|+||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 47999999999999999999999999999999998654 2357788888665321 13456899999887764
Q ss_pred CC------------CHHHHHHHHH-------------------HhhCCC-------CCC-hHHHHHHHHHHHHHcCCC--
Q 001108 955 FV------------TIYESLLFSA-------------------WLRLSP-------EVD-SETRKMFIDEVMELVELN-- 993 (1156)
Q Consensus 955 ~~------------Tv~e~l~~~~-------------------~lr~~~-------~~~-~~~~~~~v~~~l~~l~l~-- 993 (1156)
.. +++|.+...- .+.... +.. ..+.......+++...+.
T Consensus 121 ~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl 200 (337)
T 2qm8_A 121 RPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV 200 (337)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE
T ss_pred ccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE
Confidence 32 2333331100 000000 000 000000000111221111
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001108 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1156)
Q Consensus 994 ~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1055 (1156)
+..|.. ....+|+|++|++..|++++. +|++++ ||++|......+++.|.++..
T Consensus 201 NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111210 013579999999999999987 688887 999999999999999988654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-10 Score=121.48 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=41.8
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1023 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1023 ~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
+.+|++|+||||++ ++|+..+..+.+++....++|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45999999999995 99999999999999988778999999999875
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-12 Score=148.36 Aligned_cols=180 Identities=14% Similarity=0.060 Sum_probs=108.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc-------CccceEEEEcCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHI 238 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~-------~~~~~~~yv~Q~d~~~ 238 (1156)
.+|+++|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+.|.++... ..++.++|++|++..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 4899999999999999999999999999999999999887 89999999876432 1245689999987776
Q ss_pred CCC------------CHHHHHHHHhhhc--------CCCchhhHhHHHHHHHHhcCC---CCCCC-hHHHHHHHhhhhhh
Q 001108 239 GEM------------TVRETLAFSARCQ--------GVGTRYEMLTELARREKAAGI---KPDPD-IDVYMKAIATEGQE 294 (1156)
Q Consensus 239 ~~l------------TV~E~l~f~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~~d-~~~~~~~~~~~~~~ 294 (1156)
... +++|.+... ... .+|-.... .. .+...++ .-+.. -+. .+.
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~~-~~---v~~~~d~vl~v~d~~~~~~-~~~------- 186 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQSE-TA---VADLTDFFLVLMLPGAGDE-LQG------- 186 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSCH-HH---HHTTSSEEEEEECSCC--------------
T ss_pred cccCcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcch-hh---HHhhCCEEEEEEcCCCccc-HHH-------
Confidence 532 233333110 000 01111000 00 0111110 00000 000 000
Q ss_pred hHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHH
Q 001108 295 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 295 ~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~L~~ 368 (1156)
.......+...+.+ +..|.. ..+.+|+|++|++..+.+++. .|++++ +|++|......+++.|.+
T Consensus 187 i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 187 IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 00001111122222 122210 113479999999999998887 577776 999999999999999876
Q ss_pred HH
Q 001108 369 NI 370 (1156)
Q Consensus 369 ~~ 370 (1156)
..
T Consensus 258 ~~ 259 (337)
T 2qm8_A 258 HR 259 (337)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-13 Score=165.63 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=106.0
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHH
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~ 961 (1156)
.+++++++.+++|+.++|+|||||||||||++|+|... +..|.|.+.|.+.-.....+.+++..|........|..+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 47899999999999999999999999999999999775 3478899988652111112345555554332222344444
Q ss_pred HHHHHHhhCCC------CCChHHHHH------------------HHHHHHHHcCCCc--ccccccC-CC----CCCCCCH
Q 001108 962 LLFSAWLRLSP------EVDSETRKM------------------FIDEVMELVELNP--LRQSLVG-LP----GVSGLST 1010 (1156)
Q Consensus 962 l~~~~~lr~~~------~~~~~~~~~------------------~v~~~l~~l~l~~--~~~~~~~-~~----~~~~LSg 1010 (1156)
+... +|..+ ++...+... .+.++++.+...+ ....... .. ....+|+
T Consensus 326 l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 326 LRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 3321 22111 111111100 1223333333211 0000000 00 0124799
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCcHHHHHhc
Q 001108 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 1075 (1156)
Q Consensus 1011 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~i~~~~ 1075 (1156)
|||||+++|. + | |+|||+.+...+++.|.++...|+|+++ ++|+++ ++...+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999987752 2 7 9999999888888888777667899985 899875 455555
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.4e-10 Score=128.25 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCcc-------cccccccc----cccCCCChhHHHHH------HHHHHHhcC-CccceeecCCCCCCHHHH
Q 001108 298 ITDYYLKVLGLDV-------CADTMVGD----EMIRGISGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDSSTT 359 (1156)
Q Consensus 298 ~~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqrqRv------sia~al~~~-p~vllLDEptsgLD~~~~ 359 (1156)
.++..++.++++. ..+..+.+ ..+..||||||||+ ++|++++.+ |++|||||||+|||+..+
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 3455677777765 12222222 34567999999988 557888999 999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 360 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 360 ~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
..+.+.|+++. .+++++ .++|+. ++...+|++++|+
T Consensus 324 ~~l~~~l~~~~--~~~~vi-~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVK--SIPQMI-IITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCC--SCSEEE-EEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhc--cCCeEE-EEEChH-HHHhhCCEEEEEE
Confidence 99999998742 234544 455664 5789999999997
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-11 Score=136.17 Aligned_cols=131 Identities=12% Similarity=0.038 Sum_probs=82.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHH----H
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA----W 967 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~----~ 967 (1156)
+++.++||+|++|||||||.+.|.+.... .| . -.+.+.+|+|++.+++ .++++++.+.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCC-hHHHHHHhccccccch
Confidence 46789999999999999999999985431 11 0 0234556699988775 47888888752 1
Q ss_pred hhCCCCCChHHHHHHHHHHHHHcCCCc--c--cccccCCCCCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHH
Q 001108 968 LRLSPEVDSETRKMFIDEVMELVELNP--L--RQSLVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDAR 1041 (1156)
Q Consensus 968 lr~~~~~~~~~~~~~v~~~l~~l~l~~--~--~~~~~~~~~~~~LSgGqrqrl~iA--~aL~~~p~illLDEPTsgLD~~ 1041 (1156)
+.. ...+.....+...+.++.+.... . ....+.. ....+||||+||+.+| +++ +|+|||+||||+++|+.
T Consensus 93 ~~~-~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQG-RGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSS-SCSTTSBCHHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhh-ccCcchhHHHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 111 01111111233455566553320 0 0000110 1246899999999997 555 89999999999999985
Q ss_pred H
Q 001108 1042 A 1042 (1156)
Q Consensus 1042 ~ 1042 (1156)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8e-12 Score=146.49 Aligned_cols=137 Identities=16% Similarity=0.163 Sum_probs=90.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEc-----
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYIS----- 232 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~~~~~~yv~----- 232 (1156)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++.... ..+.++|.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3477887 4 3899999999999999999999999999887 899999998764211 122344443
Q ss_pred ----CCCCC--CCC----CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHH
Q 001108 233 ----QHDNH--IGE----MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (1156)
Q Consensus 233 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1156)
|++.. +++ .|+.+++.++..-..+-.. + ...+ ....++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t---------------l-h~~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST---------------L-HTNT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE---------------E-CCSS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc---------------c-chhh--------------HHHHHH-H
Confidence 87654 344 5888888765321100000 0 0000 001112 3
Q ss_pred HHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccce
Q 001108 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (1156)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vll 346 (1156)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5567776432 223699999999 9999999999865
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-10 Score=133.00 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=87.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhh--cCCCC---CCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHH
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L--~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~ 963 (1156)
+-|++|++++|+||||||||||+..| .+... ++...+.+++++..... . +.+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~-~rl~ 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------P-VRLV 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------H-HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------H-HHHH
Confidence 57899999999999999999999954 45432 11223567777654210 0 0010
Q ss_pred -HHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCEEEEeCCCCCCC
Q 001108 964 -FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 1039 (1156)
Q Consensus 964 -~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg-Gqrqrl~iA~aL~--~~p~illLDEPTsgLD 1039 (1156)
....+. ... +.+++.+-+ . ...+. .+.+.+..+.+++ .+|++|++||||+.+|
T Consensus 231 ~~a~~~g----l~~-------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRFG----LDP-------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHTT----CCH-------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHcC----CCh-------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 000000 010 112221111 0 01222 2334444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------HHHHHhcCeEEEEecC
Q 001108 1040 ARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1040 ~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~i~~~~d~v~~l~~G 1084 (1156)
+... ..+++.|++++++ |+|||+|+|..+ ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 6533 5678888888754 999999999821 1234567999999864
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-10 Score=131.88 Aligned_cols=123 Identities=12% Similarity=0.116 Sum_probs=79.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEE---cCccCCCcCc--c-ceEEEEcCCCCCC-----CCCCHH
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP--Q-RTAAYISQHDNHI-----GEMTVR 244 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---nG~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV~ 244 (1156)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|.+++.... + +.+|||+|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 458999999999999999999999 88887 999999 8987654321 1 2589999987543 78999
Q ss_pred HHH--HHHhhhcCCCchhhHhHHH-HHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccccccc
Q 001108 245 ETL--AFSARCQGVGTRYEMLTEL-ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEM 320 (1156)
Q Consensus 245 E~l--~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~ 320 (1156)
|++ .|+. . .+. |+. .+..+. .+....++++++.++|+. .++..
T Consensus 238 e~l~~~f~~-~----------~~~~c~~---~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~----- 284 (302)
T 2yv5_A 238 REVRNYFRE-F----------LRYQCKY---PDCTHT--------------NEPGCAVKEAVKNGEISCERYKSY----- 284 (302)
T ss_dssp GGGGGGCGG-G----------HHHHHHS---TTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHH-----
T ss_pred HHHHHHHHH-H----------HHccCCC---CCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHH-----
Confidence 888 4431 0 000 100 000000 011224677888999975 55544
Q ss_pred cCCCChhHHHHHHHHH
Q 001108 321 IRGISGGQKKRVTTGE 336 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~ 336 (1156)
.+.|||.++|++.|||
T Consensus 285 ~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 285 LKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3469998899999886
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-11 Score=135.61 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=81.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEE---cCccCChh--ccc-ceEEEeccCCCCC-----CCCCHH
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTIY 959 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~q~~~~~-----~~~Tv~ 959 (1156)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ... +.+||++|.+.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 4579999999999999999999999 765 45799999 88765432 112 2479999998664 67899
Q ss_pred HHH--HHHH----HhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 001108 960 ESL--LFSA----WLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVE 1021 (1156)
Q Consensus 960 e~l--~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~iA~a 1021 (1156)
|++ .|.. ..+.......++....+.++++.++|.+ ..+... ..|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 4531 0111111111223356889999999986 555553 3599999999999873
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-12 Score=154.46 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=66.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|+++|.+--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 34789999999999999999999999999999999999988 899999986522221234577777765433456888
Q ss_pred HHHHHHhh
Q 001108 245 ETLAFSAR 252 (1156)
Q Consensus 245 E~l~f~~~ 252 (1156)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88776554
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.6e-11 Score=122.86 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=36.6
Q ss_pred hcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 339 VGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 339 ~~~p~vllLDEpts-gLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 44899999999985 9999999988888876543 456777766555443
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-10 Score=136.79 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=98.1
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHH
Q 001108 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1156)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+.. ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999999843 2334333322 224566665430 111221111
Q ss_pred HH---HhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 248 AF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 248 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
-+ +....+.+. ...+.. ..++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~------~fl~~~--------------------------era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------EFLRHI--------------------------ARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------HHHHHH--------------------------TSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------HHHHHH--------------------------HHHHhhhEEeCCc--------cCCHHHH
Confidence 10 000000000 000000 0011122223332 2334469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
|+||+||+.+|++|+..|.++++ +++|...+ ..++.+++.....+.+++.+..+....+.++++.|
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999876 55555555444334455554444444455555443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-10 Score=128.91 Aligned_cols=136 Identities=15% Similarity=0.014 Sum_probs=72.5
Q ss_pred EEEEcCCCCcHHHHHhhhcC-CCCCCeEEEEEEEcCccCChh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCC
Q 001108 897 TALMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 974 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~ 974 (1156)
+.|.||||+|||||+++|++ ... +..|.+.++|.+.... .....+++++|.+.+....+ + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~--~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------M--GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h--------c--CCc
Confidence 89999999999999999998 333 2357888887654321 12345678887654311110 0 0 000
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001108 975 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054 (1156)
Q Consensus 975 ~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1054 (1156)
... .+.+.++.+......+... .||| +..+|+++|+|||++ ||+.++..+.+.+.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333321111001110 2565 778999999999999 99999999999998864
Q ss_pred hCCCEEEEEecCCcH
Q 001108 1055 DTGRTVVCTIHQPSI 1069 (1156)
Q Consensus 1055 ~~g~tvi~~~H~~~~ 1069 (1156)
.++++|+++|+++.
T Consensus 163 -~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP 176 (354)
T ss_dssp -TTEEEEEEESCSCS
T ss_pred -CCCEEEEEeCCHHH
Confidence 47899999999863
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-13 Score=142.47 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=43.1
Q ss_pred HHH-HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 334 ia~-al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| .. ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~---~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK---EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG---ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh---cc-CCceEEEECCC
Confidence 455 7889999999999999999999999999887754421 1122 12 67899988875
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.2e-10 Score=128.69 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=42.8
Q ss_pred cCCccceeecCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEecCh-------------------hhH
Q 001108 340 GPALALFMDEISTGLDSSTT------------FQIVNCLRQNIHINSGTAVISLLQPA-------------------PET 388 (1156)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~------------~~i~~~L~~~~~~~~~t~ii~i~q~~-------------------~~~ 388 (1156)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ ++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 47999999999999997543 56788888888765656555 45541 224
Q ss_pred HhhcCeEEEEcCCe
Q 001108 389 YDLFDDIILLSDGQ 402 (1156)
Q Consensus 389 ~~~~D~iilL~~G~ 402 (1156)
...+|.++.|..|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999998653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-11 Score=143.61 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=114.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhc------------CCCCCCCceeEEEEcCccCCC----cCccceE---EEEcCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAG------------KLDPTLKVSGTVTYNGHDMDE----FVPQRTA---AYISQH 234 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G------------~~~~~~~~~G~V~~nG~~~~~----~~~~~~~---~yv~Q~ 234 (1156)
.+++|..++|+|+||||||||+++|+| ..+|+ +|.|.++|..++. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 567899999999999999999999999 33455 8999999854311 2233333 467777
Q ss_pred CCCCCCCCHHHHH--HHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 001108 235 DNHIGEMTVRETL--AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1156)
Q Consensus 235 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1156)
+.+...++..|++ .|-..++.. +.++..+...
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc---
Confidence 7777777766655 332222110 0001111111
Q ss_pred cccccccccCCCChhHHHHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHH-HHhcCCeEEEEEecChhhHH
Q 001108 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQN-IHINSGTAVISLLQPAPETY 389 (1156)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~L~~~-~~~~~~t~ii~i~q~~~~~~ 389 (1156)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. .+.| |+ .|...++.
T Consensus 127 ----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~t-i~--sh~~~~~~ 186 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANT-LE--MKAKKEEQ 186 (392)
T ss_dssp ----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCS-SS--HHHHHHHH
T ss_pred ----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCc-cc--cccHHHHH
Confidence 112233366653 88 999999999999999999999888875 32 3444 33 77888999
Q ss_pred hhcCeEE-EEcCC-eEEEEcChh
Q 001108 390 DLFDDII-LLSDG-QIVYQGPRE 410 (1156)
Q Consensus 390 ~~~D~ii-lL~~G-~iv~~G~~~ 410 (1156)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 988877654
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-12 Score=149.90 Aligned_cols=135 Identities=15% Similarity=0.040 Sum_probs=89.0
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-------hcccceEEEec-------
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCE------- 947 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------- 947 (1156)
.+|+++ + .++|++++|+|||||||||||++|+|... +..|.|.+.+.++.. ....+.+|+.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 467887 4 38999999999999999999999999654 236888888876532 11223345544
Q ss_pred --cCCCC--CCC----CCHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 001108 948 --QNDIH--SPF----VTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 1018 (1156)
Q Consensus 948 --q~~~~--~~~----~Tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~i 1018 (1156)
|++.. .+. .|+.+++.+...-... ...........+ +.+..+++.+.. . ...|||||+|| |
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~~~LSgg~~QR--L 302 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----SSSLLGVLAQR--L 302 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----HHHEEEEEEEE--E
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----HHHHHHHHHHH--h
Confidence 87655 233 5889998875421100 000000111222 346677887653 2 24699999999 9
Q ss_pred HHHHhcCCCEEE
Q 001108 1019 AVELVANPSIIF 1030 (1156)
Q Consensus 1019 A~aL~~~p~ill 1030 (1156)
|++|+.+|+++.
T Consensus 303 araL~~~p~~~~ 314 (418)
T 1p9r_A 303 VRTLCPDCKEPY 314 (418)
T ss_dssp EEEECTTTCEEE
T ss_pred hhhhcCCCCccC
Confidence 999999999876
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-11 Score=128.92 Aligned_cols=121 Identities=20% Similarity=0.155 Sum_probs=70.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQ 254 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 254 (1156)
.++|++++|+||||||||||+++|+|.+++. | ..+++|+|++.++.. +..+++.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G---------------LPAEVVPMDGFHLDN-RLLEPRGLLP-RK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T---------------CCEEEEESGGGBCCH-HHHGGGTCGG-GT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C---------------CceEEEecCCCcCCH-HHHHHhcccc-cC
Confidence 4789999999999999999999999998753 2 135556655443321 1222210000 00
Q ss_pred CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHH
Q 001108 255 GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334 (1156)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsi 334 (1156)
+.... .+.+. ....+..+...+..++.+.+... ++||||+||+++
T Consensus 78 ~~~~~-------------------~~~~~---------------~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~ 122 (208)
T 3c8u_A 78 GAPET-------------------FDFEG---------------FQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGP 122 (208)
T ss_dssp TSGGG-------------------BCHHH---------------HHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECT
T ss_pred CCCch-------------------hhHHH---------------HHHHHHHHhcCCceecccCCccc-cCCCCCceEEcC
Confidence 00000 00000 01111111111223344555444 489999999999
Q ss_pred H-HHHhcCCccceeecCC
Q 001108 335 G-EMMVGPALALFMDEIS 351 (1156)
Q Consensus 335 a-~al~~~p~vllLDEpt 351 (1156)
+ ++++.++.++++|||.
T Consensus 123 ~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 123 ECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCCEEEEEESSTTBCSTT
T ss_pred CCcEEEECCceeccCCch
Confidence 8 8888898888899984
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=8e-12 Score=139.03 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=92.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1156)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...+.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 34899999999999 999999999999999999998763 789999987643221 23456666642 33444
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+++.|++.+....++ .... + .+.... +..
T Consensus 106 i~~~Deid~~~~~r~--------------~~~~--------------------------~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DRET--------------------------G------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccC--------------CCcc--------------------------h------HHHHHH-----HHH
Confidence 555555543211000 0000 0 000111 122
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCC------------CCCHHHHHHHHHHH
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEIST------------GLDSSTTFQIVNCL 366 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEpts------------gLD~~~~~~i~~~L 366 (1156)
...|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3359999999999999999999975 98864 23667777776644
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-11 Score=128.38 Aligned_cols=148 Identities=13% Similarity=0.102 Sum_probs=78.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCC-CeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhh
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr 969 (1156)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|+......... .+..... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~-~~~~~~~-------------------~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEP-RGLLPRK-------------------G 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGG-GTCGGGT-------------------T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHH-hcccccC-------------------C
Confidence 478999999999999999999999996531 233566776665543211110 0000000 0
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001108 970 LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1048 (1156)
Q Consensus 970 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA-~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1048 (1156)
.+...+... ..+.+..+...+..+...... ...+|+||+||+++| ++++.++.++++|||.. .
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 000001111 122222221111111111111 235799999999988 77788888877888741 1
Q ss_pred HHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 1049 TVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1049 ~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
.++..+ -.+|++.+..+..+...+.|
T Consensus 143 ~l~~~~---d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAIW---DVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGTC---SEEEEECCCHHHHHHHHHHH
T ss_pred HHHHhc---CEEEEEeCCHHHHHHHHHHH
Confidence 122222 36677777654334444444
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-09 Score=106.08 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=29.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.+|+++ +|+.++|+||||||||||+++|++.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356666 8999999999999999999999998865
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-11 Score=143.30 Aligned_cols=170 Identities=11% Similarity=0.083 Sum_probs=115.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCC----------CCCeEEEEEEEcCccCChh----cccce---EEEeccCCCC
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGNITISGYPKKQE----TFARI---SGYCEQNDIH 952 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~~----~~~~~---~gyv~q~~~~ 952 (1156)
.+++|..+||+|+||||||||+|+|+|.. +-.+..|.+.++|...... ..++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 1235679999987432110 01122 2467777777
Q ss_pred CCCCCHHHHH--HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--CE
Q 001108 953 SPFVTIYESL--LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP--SI 1028 (1156)
Q Consensus 953 ~~~~Tv~e~l--~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p--~i 1028 (1156)
.+..+..|++ .|.+.++.. +.++..++..+ +. .+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7777766655 444444321 11222222221 11 122355542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCeEE-EEecCc-EEEEecCCC
Q 001108 1029 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-QEIYVGPLG 1094 (1156)
Q Consensus 1029 llLDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~i~~~~d~v~-~l~~Gg-~~~~~g~~~ 1094 (1156)
+++|||+.++|+......++.++.. ...|.||+ +|... ++.+.||++. +|.+ | +.++.|...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 9999999999999999999999988 66688865 99875 5788999998 7775 5 667766654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=8.4e-10 Score=124.41 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=51.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEE---cCccCCCcCc---cceEEEEcCCCC-----------
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP---QRTAAYISQHDN----------- 236 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---nG~~~~~~~~---~~~~~yv~Q~d~----------- 236 (1156)
.+.+|++++|+|||||||||||++|+|...|+ +|+|.+ +|.+++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999998 999999 8987754321 135899999874
Q ss_pred -----CCCCCCHHHHHHHH
Q 001108 237 -----HIGEMTVRETLAFS 250 (1156)
Q Consensus 237 -----~~~~lTV~E~l~f~ 250 (1156)
+++++|+ ||+.|+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5888899 888875
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-12 Score=134.91 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.0
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 001108 1018 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1018 iA~-aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~ 1082 (1156)
+++ +++.+|++++|||||+++|..+.+.|.+.|.+.... +..+|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888899999999999999999988876542 2334621 4689987765
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.71 E-value=7.1e-09 Score=119.39 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=67.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CCCCCCCceeEEEEcCccCCCcC-ccceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 001108 181 TLLLGPPSSGKTTLLLALAG-KLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (1156)
++|.||||+|||||+++|+| .+.++ .|.+.++|.+..... .+..++|++|.+.+....+- .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcc
Confidence 89999999999999999999 56776 899999987654221 13567888886532111000 00000
Q ss_pred hhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHH
Q 001108 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (1156)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al 338 (1156)
. . .+...++.+......+..+ .+|| +
T Consensus 106 ~-~------------------------------------~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-I------------------------------------VIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-H------------------------------------HHHHHHHHHTTTTC---------------------------
T ss_pred h-H------------------------------------HHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 0 0011111111100001110 3566 7
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001108 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1156)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~ 386 (1156)
.++|+++++|||++ ||..+...+.+.|.+. ..++++|.++|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~---~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY---SKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS---TTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh---cCCCEEEEEeCCHH
Confidence 78999999999999 9999999999999864 23455555555543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.70 E-value=9.1e-10 Score=123.55 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=67.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEE---cCccCChh-cccce-EEEeccCCCCCC----CCCHH
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTIY 959 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~q~~~~~~----~~Tv~ 959 (1156)
+++.+|++++|+||||||||||+|+|+|... +..|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999765 46799988 77654321 12222 799999987765 6789
Q ss_pred HHHH--HHHH--h----hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 960 ESLL--FSAW--L----RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 960 e~l~--~~~~--l----r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
|++. |... + +........+....+.++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 1 11111111122345889999999986443321 246677766
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-10 Score=134.09 Aligned_cols=153 Identities=21% Similarity=0.239 Sum_probs=92.4
Q ss_pred eEeeceeEEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCc---CccceEEEEcCC
Q 001108 166 TILKDVSGVIKPG-------RLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEF---VPQRTAAYISQH 234 (1156)
Q Consensus 166 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~nG~~~~~~---~~~~~~~yv~Q~ 234 (1156)
.+++++++.+++| +.++|+||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4667777777665 7899999999999999999999873211 1266666655543221 113568999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 001108 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1156)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1156)
+.+.+ ++.|++.......+.. ... ... .....++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~~----i~~--~~~------------------------~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQID----IMI--GKG------------------------PSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhcccc----eee--ccC------------------------cccccccccCCCeEEEE-ecC
Confidence 66554 7888885433211100 000 000 00011222333444533 444
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI 372 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~ 372 (1156)
..+ .||+|+|||+.++ .+||+.+..++.+.|++.+..
T Consensus 159 ~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 159 RSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp CGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH
T ss_pred Ccc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH
Confidence 443 5999999998544 778888888999999877653
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-10 Score=128.66 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=65.8
Q ss_pred EeeeeeEEE-------------------eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEE---cCccCChhccc
Q 001108 883 LLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQETFA 940 (1156)
Q Consensus 883 ~L~~vs~~i-------------------~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~~ 940 (1156)
++++|++.+ ++|+++||+||||||||||+++|+|.....+..|.|.+ +|...... .+
T Consensus 50 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~ 128 (308)
T 1sq5_A 50 LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HH
Confidence 577888877 89999999999999999999999995321023688888 88775432 23
Q ss_pred ceEEEeccCCCCCCCCCHHHHHHHHHHhh
Q 001108 941 RISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (1156)
Q Consensus 941 ~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr 969 (1156)
+.+|++ |...+++.+|+.+++.+...++
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 447888 7777778899999998876554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-09 Score=120.07 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=44.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEE---cCccCCCcCc-cce-EEEEcCCCCCCC----CCCH
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP-QRT-AAYISQHDNHIG----EMTV 243 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---nG~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 243 (1156)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+.... .+. .+|+.|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999999887 899998 8876654321 122 799999986654 6899
Q ss_pred HHHHH
Q 001108 244 RETLA 248 (1156)
Q Consensus 244 ~E~l~ 248 (1156)
|+|.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 9883
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-08 Score=119.30 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=107.0
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEE-EEEEcCccCChhc-ccceEEEeccCCCCCCCCCHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQET-FARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~-~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
.|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+.+....... ..|..+.... ... +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 57888888999999999999999999999999874320 012 2222222221111 1110000000 000 0
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL 1038 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~--~~p~illLDEPTsgL 1038 (1156)
. ++. .....++ ...+.++++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-.
T Consensus 262 ~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 111 1122222 33455566666544432211 1358999886 5667776 689999999999877
Q ss_pred CH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--CcH-------HHHHhcCeEEEEecCc
Q 001108 1039 DA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1039 D~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~i~~~~d~v~~l~~Gg 1085 (1156)
++ .....+.+.|+.++++ |++||+++| + |.. .+...+|.+++|.++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 42 3346777888888754 999999999 2 431 3566799999998753
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-11 Score=136.03 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=91.9
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cccceEEEeccCC-CCCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFVT 957 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~-~~~~~~T 957 (1156)
.+++++++.+++| ++|+||||+|||||+++|+|... .+.+.++|.++... ...+.+++++|.. ...|.++
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 4789999999999 99999999999999999999654 26789998765321 1223456677653 3445555
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-
Q 001108 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS- 1036 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTs- 1036 (1156)
+.|++.+.+..+.. . ... .+....+... ..|||||+||+.|++++..+|++| |||+.
T Consensus 108 ~~Deid~~~~~r~~-----~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r 165 (274)
T 2x8a_A 108 FFDEVDALCPRRSD-----R----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAILR 165 (274)
T ss_dssp EEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHS
T ss_pred eeehhhhhhcccCC-----C----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhcC
Confidence 55555432211100 0 000 0112222221 359999999999999999999975 99864
Q ss_pred -----------CCCHHHHHHHHHHH
Q 001108 1037 -----------GLDARAAAIVMRTV 1050 (1156)
Q Consensus 1037 -----------gLD~~~~~~i~~~l 1050 (1156)
-.|...+..|++.+
T Consensus 166 ~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 166 PGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23666666666544
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-09 Score=121.82 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=60.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEE---cCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTY---NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1156)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ...+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999987 77 899999 8876432 123457888 777778899999999887
Q ss_pred hhhc
Q 001108 251 ARCQ 254 (1156)
Q Consensus 251 ~~~~ 254 (1156)
..+.
T Consensus 153 ~~l~ 156 (308)
T 1sq5_A 153 SDLK 156 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-10 Score=131.84 Aligned_cols=149 Identities=15% Similarity=0.076 Sum_probs=90.1
Q ss_pred EEeeeeeEEEeCC-------eEEEEEcCCCCcHHHHHhhhcCCCCC--CeEEEEEEEcCccCCh---hcccceEEEeccC
Q 001108 882 VLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ---ETFARISGYCEQN 949 (1156)
Q Consensus 882 ~~L~~vs~~i~~G-------e~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~ 949 (1156)
.+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... ....+.++|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4678888888876 78999999999999999999985411 1334544444333211 1123468999998
Q ss_pred CCCCCCCCHHHHHHHHHHhhCCCCC--ChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001108 950 DIHSPFVTIYESLLFSAWLRLSPEV--DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1156)
Q Consensus 950 ~~~~~~~Tv~e~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~ 1027 (1156)
+.+.+ ++.|++....... ..+. ......+.+.+.++.+++.. ..+. +..||+|+|||+.++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE--------
T ss_pred hhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce--------
Confidence 77665 7888875332211 1110 01111223444444455543 3333 246999999998655
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001108 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1156)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~ 1055 (1156)
.+||+.+...+.++|++.++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHH
T ss_pred --------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888889999888764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.3e-09 Score=117.25 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=64.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEE---cCccCChhc--c-cceEEEeccCCC------------
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQET--F-ARISGYCEQNDI------------ 951 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~q~~~------------ 951 (1156)
.+.+|++++|+||||||||||+|+|+|... +..|+|.+ +|.+..... + .+.+||++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 345799999999999999999999999876 46899999 887654311 1 134799999975
Q ss_pred ----CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCC-cccccc
Q 001108 952 ----HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSL 999 (1156)
Q Consensus 952 ----~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~ 999 (1156)
++|.+|+ ||+.|.. .... .+....+.++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~~~-----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CNHV-----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CCSS-----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-CcCC-----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4678888 8888752 1111 12234588999999995 554544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-08 Score=114.03 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=73.2
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHH
Q 001108 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (1156)
Q Consensus 887 vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~ 966 (1156)
+++..++|++++|+|+||+||||++..|++... ...|.|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH-------------------HHHHH-----
Confidence 455567899999999999999999999998643 1234566554432110 00111
Q ss_pred HhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001108 967 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1043 (1156)
Q Consensus 967 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl---~iA~aL~~~p~illLDEPTsgLD~~~~ 1043 (1156)
+....+.+++.- ....|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 122334445432 124689999999 89999999999999999974 2334
Q ss_pred HHHHHHHHHH
Q 001108 1044 AIVMRTVRNT 1053 (1156)
Q Consensus 1044 ~~i~~~l~~~ 1053 (1156)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455544443
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=9.1e-09 Score=121.91 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=48.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~ 221 (1156)
.+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 479999999999 999999999999999999999999998 9999999988754
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=102.69 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=46.6
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHH-------HHHhcCeEEEEec
Q 001108 1016 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPSID-------IFEAFDELFLMKR 1083 (1156)
Q Consensus 1016 l~iA~aL~--~~p~illLDEPTsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~-------i~~~~d~v~~l~~ 1083 (1156)
+..++.++ .+|+++++|+|++.+ |+.....++..+.++ .+.|+|||+++|..... +...+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 579999999999988 554444444555554 46699999999986521 3567899999975
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-08 Score=111.40 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=78.1
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001108 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (1156)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1156)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. +. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45556899999999999999999999999998765 677877654321 00 000111
Q ss_pred hhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHH
Q 001108 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330 (1156)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrq 330 (1156)
..+++.+|++. ....|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11233445542 1247899999
Q ss_pred HH---HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHH
Q 001108 331 RV---TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369 (1156)
Q Consensus 331 Rv---sia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~ 369 (1156)
++ ++++++..+|+++|+|+|.. ......+++.|+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 99 89999999999999999974 34455666666554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-07 Score=105.75 Aligned_cols=127 Identities=18% Similarity=0.072 Sum_probs=84.1
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHH
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 964 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 964 (1156)
++++++ +|++++|+|+||+||||++..|++... ...|.|.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~------------------~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAA------------------R-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHH------------------H-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhH------------------H-HHH--
Confidence 678887 899999999999999999999998643 123567776655321100 0 000
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q 001108 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1043 (1156)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP-TsgLD~~~~ 1043 (1156)
..+.+..++.-+.. + ....-.+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01123334432211 0 11244456788999988899999999999 999999888
Q ss_pred HHHHHHHHHHHhCCCEEEEE
Q 001108 1044 AIVMRTVRNTVDTGRTVVCT 1063 (1156)
Q Consensus 1044 ~~i~~~l~~~~~~g~tvi~~ 1063 (1156)
..+.+..+.+. ...+++++
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~ 218 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVL 218 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEE
Confidence 88888777653 34455444
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-07 Score=106.66 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=86.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHHHHhhhcC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (1156)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998754 45 23566666431 3455555543211
Q ss_pred CCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHH
Q 001108 256 VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335 (1156)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia 335 (1156)
.+|++.. . ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1222210 0 012 233355555
Q ss_pred HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEE-EecChhhHHhhcCeEEEEcCCeEEEE
Q 001108 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGTAVIS-LLQPAPETYDLFDDIILLSDGQIVYQ 406 (1156)
Q Consensus 336 ~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~--~~~t~ii~-i~q~~~~~~~~~D~iilL~~G~iv~~ 406 (1156)
+ +.+++++|+| |+|+|+.....+.+.. ++... ...++++. .+|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~-~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELK-ETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHH-HHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHH-HHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999987665444433 33210 11222222 36666778888887766777777764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-07 Score=106.06 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCcH-----
Q 001108 1014 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1069 (1156)
Q Consensus 1014 qrl~iA~aL~~~--p~illLDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1069 (1156)
+-+.++++++.+ |++|++|||++.+ |+ ..++.+.+.++++ .+.|+|||+++|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 346678888765 9999999999998 33 1222344444444 3559999999996431
Q ss_pred ----------HHHHhcCeEEEEecCcEEEEecC
Q 001108 1070 ----------DIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1070 ----------~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
.+...+|.++.+.++ +.+..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~-~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI-ETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE-EEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEe-eeeecCc
Confidence 134578888888763 4433343
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.6e-09 Score=129.06 Aligned_cols=174 Identities=20% Similarity=0.204 Sum_probs=99.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
..+++++++.+++|+.++|+||||+|||||+++|++.+++. .-|.+.+++.+.+... ..++|++|... -.+.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~----~~~~ 118 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQG----RRIV 118 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHH----HHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchH----HHHH
Confidence 34789999999999999999999999999999999999875 2388999888766543 45889887420 0011
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHh-------cCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKA-------AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
|.....+... ...+ +........... ....+.+-+. ... ...-+.+|.-....
T Consensus 119 e~~~~~~~~~-~~~r-~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-------~~~-------~~~~~L~G~~~~~~---- 178 (604)
T 3k1j_A 119 EKYREKAKSQ-ESVK-SSNMRLKSTVLVPKLLVDNCGRTKAPFID-------ATG-------AHAGALLGDVRHDP---- 178 (604)
T ss_dssp HHHHHHHHHH-TCC------------CCCEEEECCTTCSSCCEEE-------CTT-------CCHHHHHCEECCCC----
T ss_pred HHHHHhhccc-hhhh-hhcccccccccccceeeccccCCCCCEEE-------cCC-------CCHHhcCceEEech----
Confidence 1111100000 0000 000000000000 0000000000 000 00011222111111
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~ 368 (1156)
....++|+|++|++..+.....++.+|||||+.. |++.....+.+.|.+
T Consensus 179 -~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 179 -FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp -C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred -hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 1124699999999999999999999999999998 898887777777753
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.3e-08 Score=108.05 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=82.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~ 971 (1156)
++|++++|+|+||+||||++..|++.... ..| +.+.++.++.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 47899999999999999999999985421 112 12455555542 2345555543221
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001108 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051 (1156)
Q Consensus 972 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1051 (1156)
..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 159 -----------------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1122110 01222 23344555 45999999999 99999877665555444
Q ss_pred HHH---hCCCEEEE-EecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001108 1052 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1156)
Q Consensus 1052 ~~~---~~g~tvi~-~~H~~~~~i~~~~d~v~~l~~Gg~~~~~ 1090 (1156)
-+. ..+.++|+ ++|... ++.+.++++..+..+| ++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEEe
Confidence 332 12334444 378754 5666677665555544 4444
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-07 Score=97.97 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=42.4
Q ss_pred cCCccceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh--------HHhhcCeEEEEcC
Q 001108 340 GPALALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE--------TYDLFDDIILLSD 400 (1156)
Q Consensus 340 ~~p~vllLDEptsgL--D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~--------~~~~~D~iilL~~ 400 (1156)
.+|+++++|+|++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6655566777777766655555555 5555444 5678899999964
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-08 Score=104.88 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~ 1053 (1156)
+...+|++|+.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4577899999999999999 9999999999999888753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-08 Score=108.17 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=46.3
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC---ccceEEEEcCCCCCCCCCCHHHHH
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRETL 247 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1156)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999863 2445554433221 134578999976555555554443
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-08 Score=119.76 Aligned_cols=166 Identities=11% Similarity=0.057 Sum_probs=92.3
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcC--CCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCC-CCC-CHHHH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-PFV-TIYES 961 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~-~~~-Tv~e~ 961 (1156)
.+++++..+..+.|.|++||||||+++.|.. .... ..+++.+.+.+.+...+... ..-+.+. +-. .+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhhh----ccCCcccceeecCHHHH
Confidence 3667788899999999999999999999865 1211 12344444444332111110 0001111 001 12222
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-EEE
Q 001108 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL----------TIAVELVANPS-IIF 1030 (1156)
Q Consensus 962 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl----------~iA~aL~~~p~-ill 1030 (1156)
...-.++. ++.+++ .+.++..++.++.+..-.. ...+|+||+|+. ++|+++...|. +++
T Consensus 233 ~~~L~~~~-------~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWCV-------NEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHH-------HHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHH-------HHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 22111111 233333 3678888877654321000 013678877652 35566677898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCc
Q 001108 1031 MDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPS 1068 (1156)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1068 (1156)
+||++.-+|.. ...+.+.+.++++ .|.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 3445555555543 3779999999998
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-07 Score=109.25 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=106.8
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
....|+++.+-+++|+++.|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 345789999899999999999999999999999999876432 22 124454432 333
Q ss_pred HHHHHHH-hhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 244 RETLAFS-ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 244 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
.+...-. +...+... ..+ . .+... .+ +. ..+...++.++.... .+-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l----~-~g~l~---~~-----------~~-~~~~~a~~~l~~~~l---~i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL----R-TGKLT---PE-----------DW-GKLTMAMGSLSNAGI---YIDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH----H-TSCCC---HH-----------HH-HHHHHHHHHHHSSCE---EEEC--CT
T ss_pred HHHHHHHHHHHcCCCH-----HHH----h-cCCCC---HH-----------HH-HHHHHHHHHHhcCCE---EEEC--CC
Confidence 3322110 00001100 000 0 00000 00 00 112223333332221 1111 23
Q ss_pred CCChhHHHHHHHHHHHh--cCCccceeecCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEEec---------
Q 001108 323 GISGGQKKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCLRQNIHINSGTAVISLLQ--------- 383 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~--~~p~vllLDEptsgLD~--------~~~~~i~~~L~~~~~~~~~t~ii~i~q--------- 383 (1156)
++|++|.+ +.++.++ .+|+++++|+++...++ .....+.+.|+.+++..+.++| .++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi-~~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVI-ALSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEE-EEECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEE-EEecCCcccccCC
Confidence 68999886 5566665 67999999999997742 2346677888888876555554 4666
Q ss_pred ---Ch-------hhHHhhcCeEEEEcCCeE
Q 001108 384 ---PA-------PETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 384 ---~~-------~~~~~~~D~iilL~~G~i 403 (1156)
|. ..+.+.+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 157788999999987654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.7e-08 Score=101.06 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~ 368 (1156)
|..-..+.+.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3333344578899999999999999 999999999999988865
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.35 E-value=9.3e-10 Score=122.61 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=54.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1156)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4789999999999 99999999999999999999875 6899998876432111 12345555542 234455
Q ss_pred CHHHHHH
Q 001108 242 TVRETLA 248 (1156)
Q Consensus 242 TV~E~l~ 248 (1156)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 6666653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.7e-07 Score=99.72 Aligned_cols=117 Identities=18% Similarity=0.080 Sum_probs=80.1
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHHHHH
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
+++++. +|++++++|+||+||||++..|++.+.+. .|+|.+.+.+.... .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~------------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP------------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH------------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH------------------hHH-HHHH
Confidence 678888 99999999999999999999999998765 68888876543110 000 0000
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
.+.+..|++.... +. +-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~~----~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---MD----GESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---CT----TCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---CC----CCCHHH
Confidence 0112234432210 00 123335
Q ss_pred HHHHHHHHHHhcCCccceeecC-CCCCCHHHHHHHHHHHHH
Q 001108 329 KKRVTTGEMMVGPALALFMDEI-STGLDSSTTFQIVNCLRQ 368 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEp-tsgLD~~~~~~i~~~L~~ 368 (1156)
-+|.+++++...+++++|+||| ++++|......+.+..+.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 5688899988899999999999 999998887777776654
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=6.2e-08 Score=114.79 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=44.6
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.+|++||++|++ +++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 369999999999 9999999999999999999999765 4578899998765
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.1e-10 Score=124.70 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=78.9
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cccceEEEeccCCC-CCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 957 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~T 957 (1156)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.... ...+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4689999999999 89999999999999999998653 46788887543211 11223556666543 455677
Q ss_pred HHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001108 958 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~i 1028 (1156)
+.|++......+... ....++..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 777774332211100 0011122222333321 3799999999999999999986
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-09 Score=119.07 Aligned_cols=75 Identities=25% Similarity=0.387 Sum_probs=53.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCC-CCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1156)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999 99999999999999999999875 6889998866422111 12344555542 234455
Q ss_pred CHHHHH
Q 001108 242 TVRETL 247 (1156)
Q Consensus 242 TV~E~l 247 (1156)
++.+++
T Consensus 112 ~~~Dei 117 (254)
T 1ixz_A 112 VFIDEI 117 (254)
T ss_dssp EEEETH
T ss_pred EEehhh
Confidence 555555
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-08 Score=105.90 Aligned_cols=60 Identities=25% Similarity=0.193 Sum_probs=39.1
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCC
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 953 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~ 953 (1156)
|+++++|++++|+||||||||||+++|+|... .+.+++..... ....+.++|++|++..+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHH
Confidence 56788999999999999999999999999642 23444433221 11234568888865433
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=8.7e-08 Score=114.34 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=88.3
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCC--CHHH
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM--TVRE 245 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 245 (1156)
.+++.+..+..++|.|++||||||+|++|.. .+..+ .|+|.+.+.+.+.... +.-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhh--------hhhccCCcccceeec
Confidence 3677888899999999999999999999875 23332 4666665544332111 000111221 2222
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc--cccccccCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT--MVGDEMIRG 323 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt--~vg~~~~~~ 323 (1156)
+...+.+.. .....++. .+ ..+++..|+.+..+- .+. ..
T Consensus 228 d~~~a~~~L-----~~~~~Eme-----------------------------rR-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANAL-----RWCVNEME-----------------------------RR-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHH-----HHHHHHHH-----------------------------HH-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHH-----HHHHHHHH-----------------------------HH-HHHHHHcCCccHHHHHHHHH----HH
Confidence 222221110 00011111 11 245666676543221 111 24
Q ss_pred CChhHHHHH----------HHHHHHhcCCc-cceeecCCCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEecChh
Q 001108 324 ISGGQKKRV----------TTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPAP 386 (1156)
Q Consensus 324 LSGGqrqRv----------sia~al~~~p~-vllLDEptsgLD~~~~~~i~~~L~~~~~~~~--~t~ii~i~q~~~ 386 (1156)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.++++..+ +..+|..+|...
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 789998763 24555667787 78999999988843 3445555655544332 334444455433
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.3e-10 Score=121.62 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=81.1
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cccceEEEeccCCC-CCCCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVT 957 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~T 957 (1156)
.+++++++.+++| +.|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4688999999999 89999999999999999998653 46778887543211 11223456666542 445667
Q ss_pred HHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001108 958 IYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1156)
Q Consensus 958 v~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPT 1035 (1156)
+.|++......+... ....++..+.+.+++. .|||||+||+.|++++..+|++ ||++.
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 777774332221110 0011222233333332 3789999999999999999986 56654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-08 Score=126.20 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=97.3
Q ss_pred ceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCC--------
Q 001108 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-------- 951 (1156)
Q Consensus 880 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-------- 951 (1156)
...+++++++.+++|+.+.|+||||+|||||+++|++.... ...|.+.+.+.+... ....++||++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 34578999999999999999999999999999999997643 223788888866542 3345788876421
Q ss_pred --------------CCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 001108 952 --------------HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1017 (1156)
Q Consensus 952 --------------~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ 1017 (1156)
.+..+++.+|+.....-...... .... .....+.++..+..... ..++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~-v~~~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF-IDAT---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCE-EECT---TCCHHHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCE-EEcC---CCCHHhcCceEEechhh-----cCCcccccccccc
Confidence 01111111111100000000000 0000 00011112211111111 1369999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001108 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052 (1156)
Q Consensus 1018 iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1052 (1156)
.++...+++.+|||||... |++.....+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899999988888875
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.24 E-value=9.5e-07 Score=101.28 Aligned_cols=31 Identities=39% Similarity=0.578 Sum_probs=27.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999888886543
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.24 E-value=7e-07 Score=102.11 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=33.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEE-EEcCc
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV-TYNGH 217 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~nG~ 217 (1156)
+-+++|+++.|.||||||||||+..+++...+. .|.| .+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E 98 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAE 98 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecc
Confidence 468999999999999999999999999886543 4554 44443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-07 Score=99.40 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=23.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHh-cCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA-GKLDP 204 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~~~~ 204 (1156)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 34789999999999999999999999999999999 99753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.18 E-value=4.3e-08 Score=105.24 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=40.7
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-----------ccceEEEEcCC
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----------PQRTAAYISQH 234 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-----------~~~~~~yv~Q~ 234 (1156)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999998 899999998763211 13568888883
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-07 Score=95.97 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001108 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054 (1156)
Q Consensus 1016 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1054 (1156)
...|++|+.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999988887654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-06 Score=100.81 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1068 (1156)
+++++|-.++.|....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44777777777777776653 34778999999985
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-06 Score=94.87 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc-CCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 919 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g~~~ 919 (1156)
+..+++||++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999 8753
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-07 Score=98.28 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=48.5
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCCHHHHHHH
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLAF 249 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 249 (1156)
.+..++|++++|+||||||||||+++|++.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3566799999999999999999999999975 78889987764321 11245788886554555556555543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.1e-06 Score=97.63 Aligned_cols=157 Identities=15% Similarity=0.055 Sum_probs=86.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC--------CCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH---HHH
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDPT--------LKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE---TLA 248 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~--------~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E---~l~ 248 (1156)
.++|+|+||||||||++.|+|..... -..+|.|.++|.++. .-.+.|++.|.+ ...|.. ++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 49999999999999999999986421 023799999886531 123455555422 111211 111
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
........-. ..+. .+++ .. ..+....+..+++.+++.+..--.|+++ ..-+|+|+
T Consensus 254 ~~~~aD~il~-------------VvD~-s~~~-~~--------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALIL-------------VIDS-TFSE-NL--------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEE-------------EEET-TSCH-HH--------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEE-------------EEEC-CCCc-ch--------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 0000000000 0000 0000 00 0011123456677777765543445554 33478888
Q ss_pred HHHHHHH----HHH-hcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001108 329 KKRVTTG----EMM-VGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (1156)
Q Consensus 329 rqRvsia----~al-~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~ 371 (1156)
++|+.++ +.+ ..+|++ +|+|++|......+++.|.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8988877 554 333443 89999999999999998877554
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-06 Score=99.89 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+-+++|+++.|.||+|+|||||+..+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999999864
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.97 E-value=5.5e-07 Score=103.90 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=84.0
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCCCC---------CeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHH-
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRKTG---------GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS- 965 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~- 965 (1156)
.++|+|++|||||||++.|+|.... ++..|.+.++|.+. .+....|++.+.+. ..| |...-.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~----~lv-e~f~~tl 252 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPP----QIV-DAFFVTL 252 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCG----GGH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCH----HHH-HHHHHHH
Confidence 4999999999999999999996421 13568888888542 12223455443221 111 111000
Q ss_pred HHhhC---------CCCCC--hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCCEE
Q 001108 966 AWLRL---------SPEVD--SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA----VEL-VANPSII 1029 (1156)
Q Consensus 966 ~~lr~---------~~~~~--~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA----~aL-~~~p~il 1029 (1156)
..++. ..+.. ..+..+.+.++++.+++.+..--.+... +..+|+++++|+.++ +++ ..+|++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 00110 01111 1222334567777777654331111111 234688888888877 555 434454
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001108 1030 FMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1156)
Q Consensus 1030 lLDEPTsgLD~~~~~~i~~~l~~~~~ 1055 (1156)
+|||++|......+++.|.+...
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.5e-06 Score=87.47 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001108 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (1156)
Q Consensus 332 vsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~ 370 (1156)
...|++++..|.++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998876543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=95.36 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCC----------CCCCHHHHHHHHHHHHHHHH--hcCCeEEEEEecChh
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEIS----------TGLDSSTTFQIVNCLRQNIH--INSGTAVISLLQPAP 386 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEpt----------sgLD~~~~~~i~~~L~~~~~--~~~~t~ii~i~q~~~ 386 (1156)
|+++.|..++++....|.|||+||+- .|.|......+.+.|..+-. ...+.+||..++...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 56788888899988999999999993 46666555445555544321 123566676666643
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.2e-07 Score=95.76 Aligned_cols=55 Identities=24% Similarity=0.178 Sum_probs=37.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh--cccceEEEeccC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE--TFARISGYCEQN 949 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~ 949 (1156)
...++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...|+++|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 456789999999999999999999999743 6678887654321 111234666664
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-07 Score=99.46 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=38.8
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh-----------hcccceEEEeccC
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----------ETFARISGYCEQN 949 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~q~ 949 (1156)
+++|.+ ++++|+|||||||||||++|+|... +..|.|.++|.+... ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456667 8999999999999999999999754 346788888866411 1124568899874
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.89 E-value=2e-05 Score=90.86 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1068 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1068 (1156)
..+|++++|++. +.+...++-++++| +|++|+|......+++.++.... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55555677788999 99999999998888888777643 77888888 7753
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.4e-06 Score=86.29 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=33.0
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.4e-06 Score=104.90 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCcHHHHHhcCeEEEE
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~i~~~~d~v~~l 1081 (1156)
.-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||++. .+.+.+++..++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 3479999999999999999999999999996 999887776666666554456778886 88765 466677643333
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.86 E-value=2.3e-06 Score=96.82 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=61.4
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------c-----cceEEEE-cC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P-----QRTAAYI-SQ 233 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~-----~~~~~yv-~Q 233 (1156)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998776 789999877653211 1 3458889 77
Q ss_pred CCCCCCCCCHHHHHHHH
Q 001108 234 HDNHIGEMTVRETLAFS 250 (1156)
Q Consensus 234 ~d~~~~~lTV~E~l~f~ 250 (1156)
.....+..++.+++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555666666543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.5e-06 Score=87.15 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=28.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
+++++|++++|+||||||||||+++|++.+.|+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999998654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.82 E-value=6.9e-06 Score=93.25 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=80.7
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 962 (1156)
-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.- .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC---------CeEEEEeC------CCCHHHHH
Confidence 3666667799999999999999999999988875321 0 11 11333221 23332221
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1042 (1156)
.++......+.+..+++ ..||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11111222222222222 1499999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHh-C-CCEEEEEec
Q 001108 1043 AAIVMRTVRNTVD-T-GRTVVCTIH 1065 (1156)
Q Consensus 1043 ~~~i~~~l~~~~~-~-g~tvi~~~H 1065 (1156)
.|...++++.+ . |..+|++-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 55555666543 3 677877744
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.74 E-value=8e-06 Score=85.83 Aligned_cols=40 Identities=28% Similarity=0.053 Sum_probs=25.1
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
....+++|||+.+++|++++|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456999999999999999999999999999999999876
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.6e-05 Score=88.54 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=86.4
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCH
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1156)
...-|+.+.+-++||+++.|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 35568888888999999999999999999999988865431 11 13555443 3444
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
.+-..- +.... .+ +.+....+ ..
T Consensus 87 ~ql~~R----------------lls~~--~~-------------------------------v~~~~l~~--------g~ 109 (338)
T 4a1f_A 87 EQLALR----------------ALSDL--TS-------------------------------INMHDLES--------GR 109 (338)
T ss_dssp HHHHHH----------------HHHHH--HC-------------------------------CCHHHHHH--------TC
T ss_pred HHHHHH----------------HHHHh--hC-------------------------------CCHHHHhc--------CC
Confidence 433220 00000 00 00000000 14
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
||+++.+|++.|...+.++++++.|+|... ..+|...++++.+..++.-+|.+ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 999999999999888889999999998643 33555666665544423434433 66666654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.5e-07 Score=108.42 Aligned_cols=48 Identities=38% Similarity=0.571 Sum_probs=42.4
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~ 221 (1156)
+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 688999999999 99999999999999999999874 6889999877543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.6e-06 Score=92.84 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=34.6
Q ss_pred eeEEece-eeEEeccchhhhcccccCceEEeeeeeEEEeC---CeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 855 SLTFDEV-VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 855 ~l~~~~v-~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~---Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+.++|+ +++++ +...+|+|+|++|++ |++++|+|++||||||+.++|++.
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4778888 77662 123589999999999 999999999999999999999974
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.63 E-value=3.4e-06 Score=92.31 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=46.5
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHh---cCCCCCCCceeEEE--------EcCccCCCcC----ccceEEEE
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVT--------YNGHDMDEFV----PQRTAAYI 231 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~nG~~~~~~~----~~~~~~yv 231 (1156)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 988777 89998 8888764321 12567888
Q ss_pred cCC
Q 001108 232 SQH 234 (1156)
Q Consensus 232 ~Q~ 234 (1156)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 874
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.4e-06 Score=90.00 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEE--EEcCccCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV--TYNGHDMD 220 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~nG~~~~ 220 (1156)
.+..+++++..++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 345566777778999999999999999999999999986 3 5777 88887653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=1.4e-05 Score=99.55 Aligned_cols=133 Identities=15% Similarity=0.094 Sum_probs=72.2
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHHHHHHH
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLF 964 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 964 (1156)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ....+.+++..|...+...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------- 72 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------- 72 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET---------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC---------
Confidence 3467889999999999999999999999643211123555 44433221 1112223333332111100
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 001108 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1156)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1044 (1156)
.....++..||-..++ .......-..+..++++| |+.|+++.+..
T Consensus 73 -----------------------------~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 73 -----------------------------GHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp -----------------------------TEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred -----------------------------CEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 0111111122222222 112222335678899999 99999988874
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCcH
Q 001108 1045 IVMRTVRNTVDTGRTVVCTIHQPSI 1069 (1156)
Q Consensus 1045 ~i~~~l~~~~~~g~tvi~~~H~~~~ 1069 (1156)
.+ +.+ ...|.++|++.|..+.
T Consensus 118 ~~-~~~---~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 AW-TVA---ERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HH-HHH---HHTTCCEEEEEECGGG
T ss_pred HH-HHH---HHccCCEEEEecCCch
Confidence 43 333 3358899999998764
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.1e-05 Score=97.98 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=57.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeE
Q 001108 322 RGISGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1156)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1156)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.... ....+++++.+++...+.+++++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCC
Confidence 3479999999999999999999999999996 999887777776665432 234566676788877787888753
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.59 E-value=1.9e-05 Score=82.92 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
+|++|++++|+|||||||||++++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999875
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=5.5e-06 Score=90.33 Aligned_cols=38 Identities=42% Similarity=0.517 Sum_probs=35.6
Q ss_pred eEeeceeEEEeC---CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 166 TILKDVSGVIKP---GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 166 ~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999 99999999999999999999999754
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=1.4e-05 Score=84.16 Aligned_cols=71 Identities=6% Similarity=0.033 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHH-HHHhcCeEEEEec
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMKR 1083 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-i~~~~d~v~~l~~ 1083 (1156)
+.|+.+|..++..+..+|..+..+ ++.++|.....+.+.++.. .+.+||+.+|..... ....||.+++|.-
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 678888999998888888644322 3455666666665555432 356888888875321 2456899888863
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=5.1e-07 Score=107.94 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=49.8
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh---cccceEEEeccCCC-CCCCCCH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDI-HSPFVTI 958 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~~Tv 958 (1156)
+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+.... ...+.+++++|... ..|.+.+
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 578899999999 89999999999999999998643 35678887654221 11122445555543 3344455
Q ss_pred HHHH
Q 001108 959 YESL 962 (1156)
Q Consensus 959 ~e~l 962 (1156)
.|++
T Consensus 129 IDEI 132 (499)
T 2dhr_A 129 IDEI 132 (499)
T ss_dssp EECG
T ss_pred EehH
Confidence 5555
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.50 E-value=9.2e-05 Score=83.08 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=83.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCC-CCCHHHHHHHHHHhh
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP-FVTIYESLLFSAWLR 969 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~-~~Tv~e~l~~~~~lr 969 (1156)
+++| +++|+|++|+|||||++.|.|... . + ..+.+ ..+..+..|++.+++.... .-|.
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~--~----i-~s~~~--~tTr~~~~gi~~~~~~~i~~iDTp----------- 64 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKI--S----I-TSRKA--QTTRHRIVGIHTEGAYQAIYVDTP----------- 64 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSE--E----E-CCCCS--SCCSSCEEEEEEETTEEEEEESSS-----------
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCc--c----c-cCCCC--CcceeeEEEEEEECCeeEEEEECc-----------
Confidence 3444 899999999999999999998642 0 0 12222 1223455677776542110 0010
Q ss_pred CCCCCChHHHHHHHHHHH-----HHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH
Q 001108 970 LSPEVDSETRKMFIDEVM-----ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA 1042 (1156)
Q Consensus 970 ~~~~~~~~~~~~~v~~~l-----~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~--~~p~illLDEPTsgLD~~~ 1042 (1156)
....+. .....+.+ ..+.-.+..-..+. ... +|.|++ .++..+. ..|.||++ +.+|...
T Consensus 65 ---G~~~~~-~~~l~~~~~~~~~~~l~~~D~vl~Vvd--~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~ 130 (301)
T 1ega_A 65 ---GLHMEE-KRAINRLMNKAASSSIGDVELVIFVVE--GTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQ 130 (301)
T ss_dssp ---SCCHHH-HHHHHHHHTCCTTSCCCCEEEEEEEEE--TTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCC
T ss_pred ---CCCccc-hhhHHHHHHHHHHHHHhcCCEEEEEEe--CCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCc
Confidence 000000 00011111 11111111111111 123 898886 4566666 67999998 8899876
Q ss_pred -HHHHHHHHHHHHhC-CC--EEEEEecCCcHHHHHhcCeEE
Q 001108 1043 -AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 1079 (1156)
Q Consensus 1043 -~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~i~~~~d~v~ 1079 (1156)
...+.+.++++.+. |. ++.+++|+.. .+.+++|.+.
T Consensus 131 ~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 131 EKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 66777888877653 43 6677788765 4666777654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=3.7e-05 Score=79.33 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEc
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~n 215 (1156)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987642 25666543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.49 E-value=3.6e-05 Score=79.29 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.5
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 6788999999 9999999999999999999864
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.48 E-value=1.5e-05 Score=90.18 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=52.1
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-------cc-----cceEEEe-ccC
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF-----ARISGYC-EQN 949 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~-----~~~~gyv-~q~ 949 (1156)
++++++|.+++|++++|+|+||+||||++..|++... ...|.|.+.+.+.... .+ +..++++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3478999999999999999999999999999998543 1246677776665321 12 3457788 565
Q ss_pred CCCCCCCCHHHHH
Q 001108 950 DIHSPFVTIYESL 962 (1156)
Q Consensus 950 ~~~~~~~Tv~e~l 962 (1156)
....|..++++++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4333333334443
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.48 E-value=4e-05 Score=80.40 Aligned_cols=37 Identities=30% Similarity=0.173 Sum_probs=23.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+++||||.+++|++++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999964
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00038 Score=80.44 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q 001108 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1068 (1156)
Q Consensus 1024 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1068 (1156)
.+|.+|++||+..- |......+.+.+.+... .+.+||+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888766554 5789999999874
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.43 E-value=1.5e-05 Score=87.15 Aligned_cols=63 Identities=21% Similarity=0.104 Sum_probs=45.2
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc---CCCCCCeEEEEEE--------EcCccCCh----hcccceEEEec
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIT--------ISGYPKKQ----ETFARISGYCE 947 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~ 947 (1156)
++++.+ ++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444443 789999999999999999999999 8654 5678887 78876532 23445678888
Q ss_pred cCC
Q 001108 948 QND 950 (1156)
Q Consensus 948 q~~ 950 (1156)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00017 Score=83.13 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1065 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1065 (1156)
.+..++++..+++..+.+|++++|.-..+..|... ...+++++.+...| +||++.++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445433 34456667665555 56666665
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=4.8e-05 Score=81.81 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=35.5
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccC
Q 001108 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1156)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~ 219 (1156)
-++..++|++++|.|++|||||||+++|+|. .|+|.+++.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445579999999999999999999999997 47788888664
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.34 E-value=8.7e-05 Score=78.48 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=27.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=5.8e-05 Score=81.18 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=33.9
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 888 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
++..++|++++|.|+||||||||+++|+|. .|.|.+.+.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 345579999999999999999999999986 25577777664
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=7.1e-05 Score=77.21 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=29.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEc
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~ 930 (1156)
.+|++++|+||||||||||+++|++.... ...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 36899999999999999999999986431 134555443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.31 E-value=6.6e-05 Score=78.50 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999999875
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00071 Score=77.26 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999998876
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00021 Score=75.07 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=37.7
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH--HhhcCeEEEEc
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET--YDLFDDIILLS 399 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~--~~~~D~iilL~ 399 (1156)
.+.|+.+|..+++.+..+|..+.++ .+.+++.....+.+.++. ..++++|+. .+...+. ...||.+++|.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~---~~~~~vv~~-~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAE---QTAPYTLFV-VPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHT---CCSSEEEEE-CTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHh---cCCCEEEEE-echhhhcCcHhhCCEEEEEE
Confidence 3678999999999999888765544 234556555555544432 123444443 3433333 56788877764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00018 Score=81.24 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=78.5
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l 962 (1156)
-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.- .++..+-.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~sl------E~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSL------EMGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEEC------CCCHHHHH
Confidence 46777777999999999999999999998888742110 01 11333321 13332221
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001108 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042 (1156)
Q Consensus 963 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1042 (1156)
. ++......+++..+.+.. ..||.++++|+..|...+.++++.+.|+|...+
T Consensus 113 ~------------------R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~---- 164 (315)
T 3bh0_A 113 K------------------RLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV---- 164 (315)
T ss_dssp H------------------HHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH----
T ss_pred H------------------HHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH----
Confidence 1 111111111221121100 128999999999999999999999999986432
Q ss_pred HHHHHHHHHHHHhC-CCE--EEEEec
Q 001108 1043 AAIVMRTVRNTVDT-GRT--VVCTIH 1065 (1156)
Q Consensus 1043 ~~~i~~~l~~~~~~-g~t--vi~~~H 1065 (1156)
..+...++++.++ |.. +|++-|
T Consensus 165 -~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 -NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3455556665443 666 777755
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.29 E-value=5.1e-05 Score=79.83 Aligned_cols=41 Identities=27% Similarity=0.130 Sum_probs=34.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4688999999999999999999999998765 6777776544
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.25 E-value=3.8e-05 Score=88.58 Aligned_cols=44 Identities=36% Similarity=0.321 Sum_probs=39.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEE
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY 214 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 214 (1156)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 45899999999999999999999999999999999864 577655
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=8.7e-05 Score=75.88 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=31.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~ 219 (1156)
.+|++++|+|||||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999874 6677776543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00059 Score=78.42 Aligned_cols=56 Identities=7% Similarity=0.131 Sum_probs=41.6
Q ss_pred CCChhHHHHHHHHHHHhcCCccceee-cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMD-EISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLD-EptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i 381 (1156)
.+|+||+|++. +.+...++-++++| ++.+++|......+++.+..... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 58999998876 55556777888999 99999999988888877765431 44555444
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0014 Score=72.91 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++.-++|.||||+|||||+++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00015 Score=76.48 Aligned_cols=31 Identities=29% Similarity=0.168 Sum_probs=27.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
-.+++|.+++|+|+||||||||++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999863
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00021 Score=82.26 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=29.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--CCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPT 205 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~ 205 (1156)
..+|+++++.++ .++|+|++||||||||++|.|. ++..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~ 63 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence 358999999998 9999999999999999999994 4544
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00043 Score=78.15 Aligned_cols=38 Identities=29% Similarity=0.306 Sum_probs=33.2
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
...-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34568888888999999999999999999999888754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0014 Score=72.99 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---HHH
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1071 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~i 1071 (1156)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 466777777888888899999999998766532 22234444443321 2356788898753 234
Q ss_pred HHhcCeEEE
Q 001108 1072 FEAFDELFL 1080 (1156)
Q Consensus 1072 ~~~~d~v~~ 1080 (1156)
...|++.+.
T Consensus 177 ~~R~~~~i~ 185 (297)
T 3b9p_A 177 LRRFTKRVY 185 (297)
T ss_dssp HHHCCEEEE
T ss_pred HhhCCeEEE
Confidence 445655443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00082 Score=76.12 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++.|.||+|+|||||...++.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 5689999999999999999999988875
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=4.7e-05 Score=94.74 Aligned_cols=49 Identities=31% Similarity=0.279 Sum_probs=35.3
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCc
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~ 222 (1156)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~ 51 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDY 51 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccC
Confidence 3457789999999999999999999999765431 226777 566555443
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00016 Score=75.92 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=38.2
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEE--EEcCccC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--TISGYPK 934 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i--~i~g~~~ 934 (1156)
.+.+++++..++|++++|+|||||||||+.++|++... ..|.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 34566677778999999999999999999999998542 12444 7776543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00018 Score=75.99 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 919 (1156)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998754
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.04 E-value=7.2e-05 Score=86.28 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=85.8
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCC-CCCCCHHH
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH-SPFVTIYE 960 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~-~~~~Tv~e 960 (1156)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+.. .....+|+++|...+ ++..+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~~--~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLD--RLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTT--THHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccch--hHHHHHHHhcchhHHHHHHHHHHH
Confidence 4799999999999999999999999999999999843 344443121111 111235666766532 22222211
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHH---cCCCc-cc---cccc--C--CCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMEL---VELNP-LR---QSLV--G--LPGVSGLSTEQRKRLTIAVELVANPSII 1029 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~---l~l~~-~~---~~~~--~--~~~~~~LSgGqrqrl~iA~aL~~~p~il 1029 (1156)
.+ .+.............+...++- +-+.. .. +.+. + ......+++|+++|+..+++++..|+++
T Consensus 230 ~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 10 0100000000001122333320 00110 00 1000 0 0012458899999999988888999987
Q ss_pred E-EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 001108 1030 F-MDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061 (1156)
Q Consensus 1030 l-LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 1061 (1156)
+ ||+|+. .+++++.++|++++
T Consensus 305 iyLd~~~~-----------~l~~RL~~Rg~t~~ 326 (377)
T 1svm_A 305 HCLERSEF-----------LLEKRIIQSGIALL 326 (377)
T ss_dssp HHHHTCTH-----------HHHTTCTTCHHHHH
T ss_pred EEEeCCHH-----------HHHHHHHHcCccHH
Confidence 6 999987 23555555565443
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00011 Score=88.99 Aligned_cols=42 Identities=33% Similarity=0.421 Sum_probs=36.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee-EEE-EcCcc
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVT-YNGHD 218 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~nG~~ 218 (1156)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999876 65 674 78754
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0023 Score=72.38 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=28.8
Q ss_pred eecee-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 168 L~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 44432 57999999999999999999999998865
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.98 E-value=8.9e-05 Score=83.55 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
+++|+||||||||||+++|.+.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999863
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00025 Score=72.09 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0013 Score=77.84 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=91.8
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC--CCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
-|+.+.+-+++|+++.|.|++|+|||||...++.... .|. ..++++.. ++..+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~--~vl~~slE-----------------------~~~~~ 243 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV--GVGIYSLE-----------------------MPAAQ 243 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC--CEEEEESS-----------------------SCHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC--eEEEEECC-----------------------CCHHH
Confidence 3666666799999999999999999999888875321 110 11222221 12111
Q ss_pred HHH--HHHHhhCC------CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEE
Q 001108 961 SLL--FSAWLRLS------PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIF 1030 (1156)
Q Consensus 961 ~l~--~~~~lr~~------~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~--~~p~ill 1030 (1156)
-.. .+.....+ ...+.++ ...+.+.++.+.-.++.-. . ..++|..+- .+.++.+. .+|++++
T Consensus 244 l~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~l--~~~~~~l~~~~~~~lIv 315 (444)
T 2q6t_A 244 LTLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIYID---D--TPDLTLMEV--RARARRLVSQNQVGLII 315 (444)
T ss_dssp HHHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEEEE---C--CTTCBHHHH--HHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHH--HHHHHHHHHHcCCCEEE
Confidence 110 00000000 0112222 2233344444332222111 1 124677664 44556665 4799999
Q ss_pred EeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecC-----------CcH-------HHHHhcCeEEEE
Q 001108 1031 MDEPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PSI-------DIFEAFDELFLM 1081 (1156)
Q Consensus 1031 LDEPTsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------~~~-------~i~~~~d~v~~l 1081 (1156)
+|..+.=.+. .....+.+.|+.++++ |++||+++|- |.. .+...+|.++.|
T Consensus 316 ID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L 395 (444)
T 2q6t_A 316 IDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFI 395 (444)
T ss_dssp EECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEE
T ss_pred EcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEE
Confidence 9998754322 1234677778887754 9999999983 211 234567888888
Q ss_pred ec
Q 001108 1082 KR 1083 (1156)
Q Consensus 1082 ~~ 1083 (1156)
.+
T Consensus 396 ~r 397 (444)
T 2q6t_A 396 YR 397 (444)
T ss_dssp EE
T ss_pred ec
Confidence 65
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00039 Score=69.40 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=24.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1156)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 999999999999999999873
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00035 Score=69.79 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=24.1
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556665 89999999999999999986
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.003 Score=72.11 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=28.9
Q ss_pred eecee-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 168 L~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 57899999999999999999999998875
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0004 Score=82.15 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=47.8
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE-EecCcEEEEecCCC
Q 001108 1024 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGQEIYVGPLG 1094 (1156)
Q Consensus 1024 ~~p~illLDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~-l~~Gg~~~~~g~~~ 1094 (1156)
.+|++||+||+..-.+. .++..+..++..+.+.|+.||+++|.+..++....+++.- +. .|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6778888999888888999999999864322111122211 22 35666666654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0033 Score=72.45 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=25.2
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 177 PGR--LTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 177 ~G~--~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
++. .++|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 345 89999999999999999999987653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0013 Score=76.88 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999964
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00047 Score=79.35 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999874
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00042 Score=72.43 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.+|++++|+||||||||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999999999753
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0005 Score=70.10 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=29.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
.+|++++|+|+|||||||+.++|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998742 445666543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00022 Score=74.83 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=30.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
.++|++++|+|+||||||||+++|++... ...|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 57899999999999999999999998542 113445554433
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00039 Score=79.67 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=33.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
+++.+++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987765 6777776554
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00015 Score=82.98 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=40.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG 216 (1156)
.+++++++.+++|.+++|+|+||+|||||++.|++.+.+. .|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 4677888888999999999999999999999999988654 55555543
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0024 Score=71.32 Aligned_cols=29 Identities=45% Similarity=0.498 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
|...++|.||||+|||||.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45689999999999999999999987553
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00024 Score=84.04 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=32.1
Q ss_pred cCCccceeecCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 340 GPALALFMDEISTGLDS-STTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 340 ~~p~vllLDEptsgLD~-~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
.++++||+||+..-.+. .+...++..+..+.. .+..+|++.+.+..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHH
Confidence 37899999999887764 566777788876543 455666655544443
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0004 Score=71.22 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=31.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee--EEEEcCccC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHDM 219 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~nG~~~ 219 (1156)
++|++++|+|++||||||+++.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998754 34 566666543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00068 Score=72.81 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=27.9
Q ss_pred EeeceeEEEe---CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 167 ILKDVSGVIK---PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 167 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
=|.++++++. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4777888777 9999999999999999999999998763
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00016 Score=81.44 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.4
Q ss_pred eEEeeeeeEEEeCCe------EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 881 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge------~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
...|++++..|..++ ++||+||||||||||+++|.+..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345777777776665 99999999999999999999853
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00021 Score=76.14 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCceeEEEE
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKL---DPTLKVSGTVTY 214 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~V~~ 214 (1156)
+.+++|+|||||||||++++|++.+ .++ +|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d---~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD---SGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE---HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc---Ccceee
Confidence 4689999999999999999999876 333 677765
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0007 Score=68.74 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.|++++|+|+|||||||+.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0009 Score=70.31 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=26.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
-.+++|.+++|+|++||||||+.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999864
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00045 Score=78.64 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=43.3
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEee--------------eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~--------------~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+.|+|+++.++. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 132 ~ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 132 NKILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TSCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 35778888877753 234677 89999999999999999999999999999863
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0019 Score=76.40 Aligned_cols=41 Identities=29% Similarity=0.373 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-------C--CCceeEEEEcCccC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDP-------T--LKVSGTVTYNGHDM 219 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~-------~--~~~~G~V~~nG~~~ 219 (1156)
-.++|+|+||+|||||++.|+|.... + -..+|.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 47999999999999999999998531 0 02379999999764
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0025 Score=71.34 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35778889999999999999999999743
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00046 Score=83.84 Aligned_cols=46 Identities=26% Similarity=0.468 Sum_probs=38.8
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG 216 (1156)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 556666666 89999999999999999999999998765 77776655
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0027 Score=64.51 Aligned_cols=27 Identities=41% Similarity=0.662 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999874
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0026 Score=64.63 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0014 Score=69.02 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.8
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999884
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0075 Score=65.50 Aligned_cols=32 Identities=31% Similarity=0.613 Sum_probs=23.0
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++++++.+++| +.|.||+|+|||||+++|++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 44555555555 889999999999999999974
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0054 Score=71.76 Aligned_cols=36 Identities=28% Similarity=0.130 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEc
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~n 215 (1156)
++.+++++||+||||||++..|++.+.+. .++|.+-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEE
Confidence 68999999999999999999999988654 4555543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00042 Score=83.84 Aligned_cols=41 Identities=39% Similarity=0.554 Sum_probs=32.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEE-EEE-EcCc
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NIT-ISGY 932 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~-i~g~ 932 (1156)
.+++|++++|+|+||||||||+++|+|.... ..| .+. ++|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCc
Confidence 3689999999999999999999999996532 233 464 7764
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00095 Score=76.74 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999987643
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00077 Score=71.21 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=34.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcee--EEEEcCcc
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHD 218 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~nG~~ 218 (1156)
+++|.+++|+|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 4678999999999999999999999998754 67 77777644
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=67.92 Aligned_cols=29 Identities=38% Similarity=0.582 Sum_probs=23.7
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALA 199 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~ 199 (1156)
+.++.+.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344555554 99999999999999999986
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0056 Score=65.69 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d 1076 (1156)
+.|.-.+.. ...+.+-++|++||+-. ++|......+++.+......-++|++++--+.....++|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445554442 33578899999999966 6777666444444444333335666665544433444443
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0026 Score=65.75 Aligned_cols=34 Identities=38% Similarity=0.444 Sum_probs=21.0
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788999998887 6689999999999999999974
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0019 Score=66.14 Aligned_cols=40 Identities=30% Similarity=0.248 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865432235777776654
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0015 Score=68.44 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=26.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346889999999999999999999998764
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0034 Score=64.85 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 6899999999999999999973
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.002 Score=66.42 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46778888999999999999999999999976
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.00094 Score=71.82 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
.|.-.+.. ...+.+-+++++||.-. ++|......+++.+..... ...+++++.+.+.....++|+.
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 35444432 33578889999999976 6877766555554443221 2346666767666666566653
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0022 Score=68.80 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=25.7
Q ss_pred eeeeeEEEe---CCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 884 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 884 L~~vs~~i~---~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 677777776 89999999999999999999999754
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0062 Score=71.90 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.3
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 566666689999999999999999999877764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.014 Score=62.49 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 001108 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1065 (1156)
Q Consensus 1024 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1065 (1156)
.+|+++++..+.+.++......+..+++.+.. ...+||+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999998888888766666555543321 1258888888
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.017 Score=62.01 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5799999999999999999997654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0014 Score=68.39 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=29.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 36778888877775 689999999999999999874
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0009 Score=76.37 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=33.2
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468889999999999999999999999999999874
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.046 Score=62.42 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+=+++|+++.|.||+|+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.00073 Score=77.75 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=35.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 34678888877 999999999999999998874432 444433333221110011234444544333345666
Q ss_pred HHHHH
Q 001108 245 ETLAF 249 (1156)
Q Consensus 245 E~l~f 249 (1156)
+|.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 66544
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0019 Score=66.57 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=26.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
++|.+++|+|++||||||+.+.|++.+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987653
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0021 Score=75.05 Aligned_cols=45 Identities=24% Similarity=0.086 Sum_probs=38.8
Q ss_pred eceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999998875 6788776654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.026 Score=63.48 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999987774
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0088 Score=65.88 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++.-+.|.||+|+|||||.+.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999998643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0014 Score=75.02 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++.+++|+|++|||||||++.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.011 Score=67.65 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++.|.|++|+|||||...++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999999888774
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.013 Score=64.56 Aligned_cols=28 Identities=43% Similarity=0.666 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++.-++|.||+|+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998763
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0034 Score=72.48 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=26.0
Q ss_pred eeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3445678889999999999999999999987
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0012 Score=80.02 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=38.7
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
.+++++++.+ +|+.+.|+||||+|||||+++|++... ...|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 3567777777 899999999999999999999998643 346777777743
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.011 Score=62.84 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=41.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCcHHHHHhcCeEEEEe
Q 001108 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1082 (1156)
Q Consensus 1025 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~i~~~~d~v~~l~ 1082 (1156)
+|++|++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|.|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 44566777777999999999 56677888999998864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0052 Score=72.54 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCCC----------CCeEEEEEEEcCcc
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYP 933 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~~----------~~~~~G~i~i~g~~ 933 (1156)
-.++|+|+||+|||||++.|+|... ..+..|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3699999999999999999999632 11345788888864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0082 Score=60.22 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999643
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0035 Score=64.05 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++|++++|+|++||||||+.+.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999874
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.00039 Score=80.03 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=26.6
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 4677888876 999999999999999998753
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0022 Score=69.85 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=32.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~ 219 (1156)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 456788999999999999999999998874 24566776543
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.014 Score=65.66 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~ 971 (1156)
+++..+.|.||+|+|||||++.|++..... |.+ +.|+.
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~---------~~~---------~~~i~------------------------ 72 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---------GYR---------VIYSS------------------------ 72 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHT---------TCC---------EEEEE------------------------
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHC---------CCE---------EEEEE------------------------
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH--HHHHHHHHH
Q 001108 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1049 (1156)
Q Consensus 972 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~--~~~~~i~~~ 1049 (1156)
......++.+. +..+..+.. .....+|.+||+||+.. +.. .++..+...
T Consensus 73 -------~~~~~~~~~~~------------------~~~~~~~~~---~~~~~~~~vL~iDEi~~-l~~~~~~~~~l~~~ 123 (324)
T 1l8q_A 73 -------ADDFAQAMVEH------------------LKKGTINEF---RNMYKSVDLLLLDDVQF-LSGKERTQIEFFHI 123 (324)
T ss_dssp -------HHHHHHHHHHH------------------HHHTCHHHH---HHHHHTCSEEEEECGGG-GTTCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHH------------------HHcCcHHHH---HHHhcCCCEEEEcCccc-ccCChHHHHHHHHH
Q ss_pred HHHHHhCCCEEEEEecCC
Q 001108 1050 VRNTVDTGRTVVCTIHQP 1067 (1156)
Q Consensus 1050 l~~~~~~g~tvi~~~H~~ 1067 (1156)
+..+.+.|..+|++++.+
T Consensus 124 l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 124 FNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHTTCEEEEEESSC
T ss_pred HHHHHHCCCeEEEEecCC
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0037 Score=65.46 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4688999999999999999999998643
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0037 Score=66.42 Aligned_cols=56 Identities=21% Similarity=0.097 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCCC-CCeEEEEEEE--------cCccCCh----hcccceEEEeccC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITI--------SGYPKKQ----ETFARISGYCEQN 949 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~q~ 949 (1156)
+.+++|+|++||||||+.++|++... .-...|.+.. +|.+... ....+.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 56899999999999999999987431 1134466665 5655432 1233456777765
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0011 Score=75.25 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=31.3
Q ss_pred EeeceeEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 167 ILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 167 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56666667777777 99999999999999999999864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0023 Score=66.59 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.4
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3678888888887 5789999999999999999874
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0032 Score=71.73 Aligned_cols=33 Identities=36% Similarity=0.641 Sum_probs=31.3
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 789999999999999999999999999999875
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0016 Score=72.62 Aligned_cols=46 Identities=26% Similarity=0.138 Sum_probs=37.3
Q ss_pred ec-eeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 169 KD-VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 169 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 777766 9999999999999999999999998764 5677665543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0049 Score=64.33 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001108 180 LTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1156)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0051 Score=63.31 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=25.9
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999854
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0074 Score=61.65 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0066 Score=62.23 Aligned_cols=27 Identities=41% Similarity=0.667 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0051 Score=68.78 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+..++|+|+||+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999973
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.063 Score=61.36 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++..-++|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678999999999999999999875
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0059 Score=66.33 Aligned_cols=45 Identities=38% Similarity=0.643 Sum_probs=29.9
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~ 218 (1156)
.++++++..++| ++|.||||+|||||+++|++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 345555555555 8999999999999999999986532 35566544
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.013 Score=59.78 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0064 Score=61.80 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.02 Score=65.64 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.037 Score=65.28 Aligned_cols=38 Identities=29% Similarity=0.571 Sum_probs=32.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577777779999999999999999999999888754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0064 Score=63.42 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0079 Score=60.37 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.006 Score=63.64 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999997
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.058 Score=61.66 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+..-+.|.||+|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34556889999999999999999864
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0089 Score=60.18 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997753
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0098 Score=61.18 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0093 Score=60.98 Aligned_cols=38 Identities=34% Similarity=0.323 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCCC-CCeEEEEEEEcCc
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGY 932 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~g~ 932 (1156)
.+++|+|+||||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999987421 1233466666543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0084 Score=69.21 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=32.0
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC---------CCeEEEEEEEcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISG 931 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---------~~~~~G~i~i~g 931 (1156)
..+..|..++|+|++|+|||||++.|+|... -.+..|.+.+.+
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567888999999999999999999998621 123457776655
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=60.33 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.0028 Score=72.07 Aligned_cols=41 Identities=32% Similarity=0.606 Sum_probs=34.7
Q ss_pred ceEeeceeEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 165 LTILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
..+++.++..++.|++ +++.||||+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3467777778888888 9999999999999999999987543
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.011 Score=65.49 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=28.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG 216 (1156)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3567999999999999999999987653 24455554
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=62.84 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999765
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.011 Score=60.73 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=25.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 890 AFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 890 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
...+|.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999874
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=65.66 Aligned_cols=30 Identities=37% Similarity=0.603 Sum_probs=26.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++++.-++|.||||+|||||+++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356788999999999999999999999764
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.0028 Score=71.74 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=31.7
Q ss_pred EeeeeeEEEeCCeE--EEEEcCCCCcHHHHHhhhcCC
Q 001108 883 LLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++++++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 67888888899988 999999999999999999874
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.014 Score=59.76 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=60.37 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=59.44 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998765
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=63.38 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998753
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=62.57 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=24.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999864
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=58.37 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 001108 180 LTLLLGPPSSGKTTLLLAL 198 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L 198 (1156)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=59.48 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.16 Score=60.72 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.3
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
|+.+.+-+.+|+++.|.|++|+|||||..-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 455545689999999999999999999877663
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.063 Score=63.26 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=31.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 4457777777999999999999999999998888754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.013 Score=59.59 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999988654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.018 Score=59.99 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.014 Score=60.24 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.018 Score=58.31 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 001108 179 RLTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G 200 (1156)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.014 Score=61.38 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
+++|.+++|+|++||||||+.+.|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999998753
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.015 Score=59.40 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.0062 Score=71.13 Aligned_cols=46 Identities=24% Similarity=0.088 Sum_probs=35.4
Q ss_pred eeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
+++++. +|++++++|+||+||||++..|++.... ..+.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 577777 8899999999999999999999985431 134566665554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.014 Score=60.80 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.016 Score=59.13 Aligned_cols=26 Identities=46% Similarity=0.378 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.+..+.|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.26 Score=55.37 Aligned_cols=119 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~ 971 (1156)
.|..-+-|.||.|+|||||.+.++....+... +.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~--------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSS--------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECC---------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhH---------------------------------------
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-------CCCCCHHHHH
Q 001108 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAAA 1044 (1156)
Q Consensus 972 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEP-------TsgLD~~~~~ 1044 (1156)
.+.....| ...+.-|-.+..+-..+|.|||+||. ..+.......
T Consensus 81 ----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 81 ----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHH
Q ss_pred HHHHHHHHH-----HhCCCEEEEEecCC---cHHHHHhcCeEEEE
Q 001108 1045 IVMRTVRNT-----VDTGRTVVCTIHQP---SIDIFEAFDELFLM 1081 (1156)
Q Consensus 1045 ~i~~~l~~~-----~~~g~tvi~~~H~~---~~~i~~~~d~v~~l 1081 (1156)
.+.+++..+ ...+..||.++..| +..+...||+.+.+
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=60.33 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G 200 (1156)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.019 Score=59.16 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.02 Score=59.79 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998764
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.021 Score=59.10 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998763
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.11 Score=59.63 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=0.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcC--CCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHh
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~l 968 (1156)
+++|+++.|.|+.|+|||||...++. ...++.. ++++..........+..|.-.++-......++.+.+.....+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~v---lyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC---AFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE---EEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeE---EEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHH
Q ss_pred hCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC----------
Q 001108 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL---------- 1038 (1156)
Q Consensus 969 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgL---------- 1038 (1156)
.... ++++|++|..++=.
T Consensus 148 ~~~~----------------------------------------------------~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 148 VRSG----------------------------------------------------AIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp HTTT----------------------------------------------------CCSEEEEECTTTCCCSTTC-----
T ss_pred HhcC----------------------------------------------------CCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 001108 1039 DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1065 (1156)
Q Consensus 1039 D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1065 (1156)
|. ...+.+.+.++++ .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.022 Score=57.78 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.026 Score=57.95 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.05 Score=73.25 Aligned_cols=30 Identities=40% Similarity=0.565 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.021 Score=57.36 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.025 Score=59.76 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998765
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.0083 Score=62.92 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.023 Score=59.43 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=24.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++|.+++|.|++||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997653
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.024 Score=57.51 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998643
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.021 Score=58.95 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+.|+||||||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999753
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.024 Score=60.77 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
-.+|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 36788999999999999999999986
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.0097 Score=61.55 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1156 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-22 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-18 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-25 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-20 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-21 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-18 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-20 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-20 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-15 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-18 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-14 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 4e-05 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 9e-05 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 9e-05 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 5e-04 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 0.002 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.002 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.003 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 113 bits (285), Expect = 9e-29
Identities = 56/271 (20%), Positives = 98/271 (36%), Gaps = 54/271 (19%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
T + ++ IK G +LLGP GKTT L +AG +PT G + + D+ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP-------------------------- 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
E + + ++L ++ + +SGGQ++RV +V
Sbjct: 110 --------KDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE + LD+ + +++ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ G P E+ + P VA F+
Sbjct: 216 LQIGSPTEV---------YLRPNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (268), Expect = 2e-26
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 23/213 (10%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
R Q+ P +T+YE++ F ++ + + + EL+++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1054
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 1055 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
T + H D EA D + +M RG
Sbjct: 185 KLKVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (277), Expect = 8e-28
Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 928
K + E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 929 ISGYPKKQETFARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 986
+ + T R G+ Q P +T E++ + + E R+ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 987 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
+++ EL + P + LS Q++R+ IA L NP II D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 1047 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
M+ ++ + G+TVV H I++ + + +K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 93.7 bits (233), Expect = 6e-22
Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+ + LK+V+ IK G ++GP SGK+T+L + PT G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MDEFVPQRTA-------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
++ ++ Q N I +T E + + G ++ RR++
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKR 124
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A + + A+ +SGGQ++R
Sbjct: 125 AL--------------------------ECLKMAELEERFANHKPNQ-----LSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
V + + D+ + LDS T +I+ L++ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIVYQGP 408
+ II L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (275), Expect = 3e-27
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 8/208 (3%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
Q +T+ E+LL ++S K +I + E+VE +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 1002 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T + H+ + D L++M G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 103 bits (259), Expect = 3e-25
Identities = 54/254 (21%), Positives = 88/254 (34%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L G V + D+ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 ----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Q + EMTV E L C G + + ++
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-------- 125
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
E L+ L L D G+ +SGGQ K V G ++
Sbjct: 126 -------------EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
+ MDE G+ I N + + G + + + D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLE--LKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (271), Expect = 6e-27
Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
+ G+ G + L+G +GAGKTT + +AG R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLV 1000
+ P +T+YE+L+ A+ R D E K ++ + L L + L
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
G LS +++ L I L++ P ++ MDEP+ GL + V ++ G T+
Sbjct: 138 G-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 1061 VCTIHQPSIDIFEAF---DELFLMKRG 1084
+ + A ++++ G
Sbjct: 193 LLVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 83.4 bits (206), Expect = 2e-18
Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-LKVSGTVTYNGHDMDEFV 223
+ +K + + G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ A + + E+TV E L A + + E
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK-----RDLEWI----------- 122
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ L + G +SGG+++ + G ++
Sbjct: 123 ------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE S GL ++ +++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 102 bits (257), Expect = 7e-25
Identities = 55/263 (20%), Positives = 97/263 (36%), Gaps = 46/263 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
ILKD++ I+ G +G GK+TL+ + D T SG + +GH++ +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 222 FVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
F+ I Q DN + TV+E + G E+ K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF- 136
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
++ L DT VG E +SGGQK+R++ + +
Sbjct: 137 -------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFL 170
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DE ++ LD + I L ++ + ++ T D I+++
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIE 226
Query: 400 DGQIVYQGPRELVLE---FFASM 419
+G IV G ++ + +
Sbjct: 227 NGHIVETGTHRELIAKQGAYEHL 249
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 90.2 bits (224), Expect = 1e-20
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 21/238 (8%)
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 909 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTIYESLLFSA 966
TL++++ +G I I G+ K + Q D T+ E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 967 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1026
EV + + + L + VG GV LS Q++RL+IA + NP
Sbjct: 117 PTATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNP 173
Query: 1027 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
I+ +DE TS LD + +I+ + + RT + H+ S D++ +++ G
Sbjct: 174 PILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIENG 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 101 bits (254), Expect = 1e-24
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 14/218 (6%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 928
KV + LN VS G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 929 ISGYPKKQETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
++ + + T AR G Q+ T++ ++ L +P+ + + R + E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 988 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
LV L S S LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 1048 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+++ G T++ H+ + + D + ++ G
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 101 bits (252), Expect = 2e-24
Identities = 52/280 (18%), Positives = 97/280 (34%), Gaps = 57/280 (20%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
R + L +VS + G++ ++G +GK+TL+ + PT G+V +G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MDEFVPQRTA------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ I QH N + TV +A + +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 121
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
L ++GL D+ + +SGGQK+RV
Sbjct: 122 ---------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ L DE ++ LD +TT + + L ++I+ G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATT-RSILELLKDINRRLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADF 432
D + ++S+G+++ Q V F PK F
Sbjct: 209 DCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (252), Expect = 2e-24
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
++ Y + + E L F A S + E ++ E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKI 127
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 94.3 bits (234), Expect = 5e-22
Identities = 55/276 (19%), Positives = 95/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
ILK +S I+ G + L+GP +GKTT L ++ + P+ SG VT G ++ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 Q--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ + +Y+ + M E L F A +
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----------------------- 108
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
E + + ++ GL V S G +++ ++
Sbjct: 109 -----------EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE ++GLD ++ L+Q G ++ E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEVT 437
IV G EL K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (253), Expect = 2e-24
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 941 RIS-----------GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
Q+ +T+ E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 990 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
++ + G+T+V H ++ A + + +G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 93.0 bits (231), Expect = 2e-21
Identities = 59/300 (19%), Positives = 107/300 (35%), Gaps = 68/300 (22%)
Query: 153 NYLRIIPSKKR--HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG 210
N L +I KR +LK VS + G + ++G SGK+T L + P+ G
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EG 57
Query: 211 TVTYNGHDMDEFVPQ----------------RTAAYISQHDNHIGEMTVRETLAFSARCQ 254
+ NG +++ + + QH N MTV E + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-- 115
Query: 255 GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314
+ L++ RE+A YL +G+D A
Sbjct: 116 ----QVLGLSKHDARERA---------------------------LKYLAKVGIDERAQ- 143
Query: 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+ +SGGQ++RV+ + L DE ++ LD +++ ++Q
Sbjct: 144 ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ--LAEE 198
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
G ++ + + +I L G+I +G E + F + P+ + FL+
Sbjct: 199 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 99.2 bits (247), Expect = 3e-24
Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
+ + I +++ + L A L K I + +E VE+ L++
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK----- 122
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1062
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1063 TIHQPSI 1069
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 82.3 bits (203), Expect = 3e-18
Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 48/221 (21%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S +L+ ++ I+ G + GP GKTTLL ++ L P G + YNG +
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 65
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + ++ + +++V + L A GV + +
Sbjct: 66 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------- 110
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
L+ + + + +S G +RV ++
Sbjct: 111 -----------------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLL 141
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
A +D+ +D + +++ + + I G +IS
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.6 bits (248), Expect = 2e-23
Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 19/201 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
+C Q P TI E+++F E ++ ++ + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1064 IHQPSIDIFEAFDELFLMKRG 1084
+ D++ ++ +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 97.7 bits (243), Expect = 9e-23
Identities = 50/281 (17%), Positives = 93/281 (33%), Gaps = 60/281 (21%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LK+++ I+ G + + G SGKT+LL+ + G+L+ + G + ++G F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRVS--FCSQ- 104
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ I T++E + F KA ++
Sbjct: 105 --------FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQ---------- 138
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
+ +T++G E +SGGQ+ R++ + A
Sbjct: 139 ----------------QDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+D LD T Q+ + N +++ E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFY 238
Query: 407 G-PREL-------VLEFFASMGFRCPKRKGVADFLQEVTSR 439
G EL + F + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (238), Expect = 2e-22
Identities = 50/264 (18%), Positives = 107/264 (40%), Gaps = 45/264 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
+ + +L+ ++ ++PG +T L+GP SGK+T+ L PT G + +G + +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 222 FVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ + R A + Q + + +++E +A+ G+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
P ++ A G + GL DT V + + +SGGQ++ V +
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
+ L +D+ ++ LD+++ Q+ L ++ S + ++ + D I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 399 SDGQIVYQGPRELVLE---FFASM 419
G I G + ++E + +M
Sbjct: 225 EGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (222), Expect = 2e-20
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 21/234 (8%)
Query: 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
+ F +V ++ ++ V L G++ RPG +TAL+G +G+GK+T+ +L
Sbjct: 11 LVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 915 AG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971
+ TGG + + Y + R Q ++ E++ + + +
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRY--LHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPT 117
Query: 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031
E + + P S LS QR+ + +A L+ P ++ +
Sbjct: 118 MEEITAAAVK--SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 175
Query: 1032 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
D+ TS LDA + V + + + + R+V+ S + E D + ++ G
Sbjct: 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGG 227
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 95.7 bits (238), Expect = 2e-22
Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 11/204 (5%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFA 940
L ++ G AL+G SG+GK+T+ ++ G+I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
QN +++ R + M+ + +
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTS 204
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRG 1084
+ H+ S E DE+ +++ G
Sbjct: 205 LVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 89.1 bits (221), Expect = 4e-20
Identities = 48/264 (18%), Positives = 100/264 (37%), Gaps = 47/264 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
R + L++++ I G+ L+G SGK+T+ + D G + +GHD+ E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 222 FVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ + A +SQ+ + + T ++ + A
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYAMDF 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ +D DT++G E +SGGQ++R+ +
Sbjct: 135 --------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARAL 167
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
+ + L +DE ++ LD+ + I L + + + ++ T + D+I+++
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVV 223
Query: 399 SDGQIVYQGPRELVLE---FFASM 419
DG IV +G +L +A +
Sbjct: 224 EDGIIVERGTHSELLAQHGVYAQL 247
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 93.8 bits (233), Expect = 5e-22
Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 27/211 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 940
L +SG R G + L+G +GAGK+TL+ +AG +G G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
Y Q ++ L + TR +++V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G +V + H + +L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 84.2 bits (208), Expect = 1e-18
Identities = 49/259 (18%), Positives = 83/259 (32%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG + G++ + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ + + L LD +SGG+ +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
L +DE LD + + L G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSDGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.7 bits (230), Expect = 2e-21
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---K 934
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
R G Q D +I +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
GRTV+ H+ S + D + +M++G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 86.5 bits (214), Expect = 2e-19
Identities = 54/251 (21%), Positives = 94/251 (37%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL +++ IK G + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + Q DN + ++ + ++ + V ++ K AG
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSV-------EKVIYAAKLAGA-------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ + E G+SGGQ++R+ +V
Sbjct: 119 -------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L DE ++ LD + I+ + + I G VI + T D II++ G+I
Sbjct: 160 ILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKI 215
Query: 404 VYQGPRELVLE 414
V QG + +L
Sbjct: 216 VEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 2e-21
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 19/211 (9%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 938
++V+ ++ G +G SG GK+TL+ ++AG +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 939 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
A G Q+ P +++ E++ F L + + R +++V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLD 125
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1056
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1057 GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
GRT++ H D EA D++ ++ G
Sbjct: 181 GRTMIYVTH----DQVEAMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 89.6 bits (222), Expect = 1e-20
Identities = 56/272 (20%), Positives = 96/272 (35%), Gaps = 54/272 (19%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+ + KD++ I G + +GP GK+TLL +AG T SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PQRTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P + Q ++V E ++F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQRV---------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ +VL L D +SGGQ++RV G +V
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE + LD++ + +H G +I + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 403 IVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ G P EL + P + VA F+
Sbjct: 209 VAQVGKPLEL---------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 90.7 bits (225), Expect = 9e-21
Identities = 54/259 (20%), Positives = 87/259 (33%), Gaps = 45/259 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+D+S +P + GP GK+T+ L PT +G +T +G +D +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ I D+ I T+RE L + + +LA PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+T VG E ISGGQ++R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LDS + + L + G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE---FFASM 419
G ++ +A
Sbjct: 216 TGSGKHNELVATHPLYAKY 234
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.1 bits (213), Expect = 3e-19
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 11/204 (5%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
G+ Q+ TI E+L + + E + + VE P + +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTE 132
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GRT
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTT 191
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRG 1084
+ H+ S D+++ +++G
Sbjct: 192 LVIAHRLS--TIVDADKIYFIEKG 213
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 87.8 bits (217), Expect = 6e-20
Identities = 56/276 (20%), Positives = 105/276 (38%), Gaps = 57/276 (20%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S+K L ++S ++ G ++LGP +GKT L +AG P SG + +G D+
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 220 DEFVPQR-TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ P++ A++ Q+ + M V++ L F R + + ++
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPKRVLDT--- 111
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ L ++ D +SGG+++RV +
Sbjct: 112 ------------------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARAL 142
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + LD T + + +H + V+ + E + D I ++
Sbjct: 143 VTNPKILLLDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201
Query: 399 SDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
DG+++ G P E+ F P VA F+
Sbjct: 202 MDGKLIQVGKPEEI---------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 74.3 bits (182), Expect = 3e-15
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 16/203 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARI 942
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 943 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 1002
+ QN P + + ++L F ++ + + +++ L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1061
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1062 CTIHQPSIDIFEAFDELFLMKRG 1084
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.4 bits (216), Expect = 1e-19
Identities = 50/280 (17%), Positives = 98/280 (35%), Gaps = 59/280 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KK + L +V+ I+ G +LGP +GKTT + +AG P+ +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 221 EFVPQ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
R + Q +T E +AF +++ R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-------KMSKEEIRKRV-- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ K+L + + R +SG Q++RV
Sbjct: 122 -------------------------EEVAKILDIHHVLNH-----FPRELSGAQQQRVAL 151
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE + LD+ L + + G ++ + + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVVSHDPADIFAIADR 210
Query: 395 IILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ +L G++V G P +L + P VA +
Sbjct: 211 VGVLVKGKLVQVGKPEDL---------YDNPVSIQVASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.9 bits (212), Expect = 3e-19
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 937
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 938 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
R G Q P +T +E++ F ++ E + ++EV ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1054
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T++ H P+ DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
++ + +S + G L+G SG GKTT + ++AG + G I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 936 QETFARISG--YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
+ Q+ P +T+Y+++ F LR P + + R + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1054 V-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
G T + H D EA D + +M RG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 83.1 bits (205), Expect = 4e-18
Identities = 52/277 (18%), Positives = 95/277 (34%), Gaps = 58/277 (20%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+T ++++S +K G +LLGP GKTT L +AG +P+ G + + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ Q MTV + +AF + + V + ++
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-------EIDQRV---- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
++LGL + + +SGGQ++RV G
Sbjct: 121 -----------------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGR 152
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+V MDE + LD + + + + G I + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
Query: 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
+++ G + G + V + P VA F+
Sbjct: 212 VMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 75.8 bits (186), Expect = 1e-15
Identities = 51/259 (19%), Positives = 92/259 (35%), Gaps = 55/259 (21%)
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA-AYISQH 234
+LLGP +GK+ L +AG + P G V NG D+ P+R ++ Q
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQD 78
Query: 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQE 294
++V +A+ R R + E+
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------------- 110
Query: 295 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354
+ + D +SGG+++RV +V L +DE + +
Sbjct: 111 -------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157
Query: 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
D T ++ LR + ++ + E L D++ ++ +G+IV +G + E
Sbjct: 158 DLKTKGVLMEELRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK---E 213
Query: 415 FFASMGFRCPKRKGVADFL 433
F+ K VA+FL
Sbjct: 214 LFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.4 bits (172), Expect = 7e-14
Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQN 949
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 950 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009
P +++Y ++ + V+ R + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1068
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1069 IDIFEAFDELFLMKRG 1084
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.1 bits (113), Expect = 9e-07
Identities = 23/201 (11%), Positives = 44/201 (21%), Gaps = 42/201 (20%)
Query: 898 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 954
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014
+ + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1074
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1075 FDELFLMKRGGQEIYVGPLGR 1095
E+ + G I + P R
Sbjct: 146 VKEIRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 13/104 (12%), Positives = 25/104 (24%), Gaps = 5/104 (4%)
Query: 182 LLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYISQHDNHIG 239
++ G P GKTTL+ + +L + E +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ V E+ + R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII 104
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.1 bits (105), Expect = 4e-05
Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 22/152 (14%)
Query: 948 QNDIHSPFVTIYESLL-----------FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ + IY L +A L + E + + L +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
G V+ L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 1057 GRTVVCTIHQPSIDIFEAFDELF---LMKRGG 1085
+ + +FE D L ++
Sbjct: 386 DLQFIVISLKN--TMFEKSDALVGVYRQQQEN 415
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 43.5 bits (102), Expect = 9e-05
Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 15/148 (10%)
Query: 79 QERQRLIDKLVKVTDVDNERFLLKLKN--RIDRVGIDLPKVEVRYEHLNVEAEAFLASNA 136
++++ N KN I + +D + R + L + E L +
Sbjct: 41 IKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRF 100
Query: 137 LP----SFIKFYTNIFEDILNYLRIIPS--------KKRHLTILKDVSGVIKPGRLTLLL 184
I F + DI ++ + LK + I R L
Sbjct: 101 NDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160
Query: 185 GPPSSGKTTLLLALAGKLD-PTLKVSGT 211
GP SGKTTL AL L V+
Sbjct: 161 GPIDSGKTTLAAALLELCGGKALNVNLP 188
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 9e-05
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 2/127 (1%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLL--ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA 229
G I+ G +T + G +GKT + A+ +L F P+R A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
++ ++ A + + + + A + D +Y +
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGQEAN 296
G+ +
Sbjct: 137 GRGELSA 143
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 3/137 (2%)
Query: 185 GPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244
+GKTTLL L L H + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALC---ARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
+ A E+ + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLDVCADTMVGDEMI 321
L +D + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.002
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTA 228
G ++ G +T L G +GK+ L LA G Y + F P R
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT-FRPVRLV 86
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
+ + + A + + ++ + + I D + +Y
Sbjct: 87 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 38.9 bits (89), Expect = 0.002
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYI 231
G ++ +T G SGKT ++ L V Q A YI
Sbjct: 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL---QNPEFLFYDEEAVSKGEVAQPKAVYI 84
Query: 232 S 232
Sbjct: 85 D 85
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.003
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202
+ G + L+ P +GK+ L L LA ++
Sbjct: 26 MVAGTVGALVSPGGAGKSMLALQLAAQI 53
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1156 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.59 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.35 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.33 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.25 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.94 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.88 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.53 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.46 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.45 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.98 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.93 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.53 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.45 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.34 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.16 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.92 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.68 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.64 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.56 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.53 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.35 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.33 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.32 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.3 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.3 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.2 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.18 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.12 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.1 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.05 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.03 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.0 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.93 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.92 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.9 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.85 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.84 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.69 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.68 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.67 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.66 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.58 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.57 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.51 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.49 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.47 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.36 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.27 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.25 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.21 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.18 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.17 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.17 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.13 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.11 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.04 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.03 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.01 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.98 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.9 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.89 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.88 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.84 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.78 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.78 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.73 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.69 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.67 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.67 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.64 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.59 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.59 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.59 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.58 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.54 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.52 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.48 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.47 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.46 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.46 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.4 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.39 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.37 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.32 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.31 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.29 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.29 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.28 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.27 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.26 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.23 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.19 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.15 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.15 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.14 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.1 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.08 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.07 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.06 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.01 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.97 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.95 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.93 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.92 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.92 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.92 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.91 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.91 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.9 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.89 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.88 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.87 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.86 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.85 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.85 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.8 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.76 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.74 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.73 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.71 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.63 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.6 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.56 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.56 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.53 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.44 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.43 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.41 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.4 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.39 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.35 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.34 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.22 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.21 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.16 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.1 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.02 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.01 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.92 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.79 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.78 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.76 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.72 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.72 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.66 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.59 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.51 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.49 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.47 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.45 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.43 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.41 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.4 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.25 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.24 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.23 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.2 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.17 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.05 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.96 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.89 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.85 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.82 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.81 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.77 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.77 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.76 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.71 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.61 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.54 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.45 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.45 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.41 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.36 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.35 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.34 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.3 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.3 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.27 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.27 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.23 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.17 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.15 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.13 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.08 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.04 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.94 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.89 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.89 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.88 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.87 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.79 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.76 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.73 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.73 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.67 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.65 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.61 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.53 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.5 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.45 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.41 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.38 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.37 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.33 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.29 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.28 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.25 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.24 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.23 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.22 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.19 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.16 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.15 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.13 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.1 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.09 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.09 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.07 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.01 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.96 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 89.95 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.93 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.93 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.93 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.92 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.9 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.88 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.78 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.77 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.7 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.69 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.67 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.66 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.65 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.59 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.48 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.47 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.46 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.45 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.43 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.41 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.41 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.4 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.35 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.34 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.33 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.3 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.23 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.21 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.15 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.15 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.1 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.09 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.04 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.99 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.97 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.96 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 88.89 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.86 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.85 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.85 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.83 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.82 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.77 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.61 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.45 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.43 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.42 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.41 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.37 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.31 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.27 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.23 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.16 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.15 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.11 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.02 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.96 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.93 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.83 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.81 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.75 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.73 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 87.71 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.66 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.64 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.52 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.46 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.44 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.4 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.35 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.35 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.26 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.23 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.23 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.15 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.12 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.1 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.03 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.01 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 86.99 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.95 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.86 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.82 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.81 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 86.72 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.68 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.67 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.52 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.5 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.49 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.48 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.46 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 86.41 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 86.39 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.31 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.27 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.26 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.19 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.11 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.01 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.96 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 85.92 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.9 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.81 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.73 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.67 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.63 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 85.61 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.58 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.55 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.52 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.44 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.42 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.25 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.24 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 85.16 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.12 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.1 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.92 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.91 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.86 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.82 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.82 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.8 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.76 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.49 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.37 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.24 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.21 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.11 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 84.02 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.92 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.9 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 83.9 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.9 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.87 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 83.86 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.7 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 83.22 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 83.21 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.19 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.17 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 83.05 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.04 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.6 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 82.4 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 82.12 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.95 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 81.6 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.51 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 81.38 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 81.37 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.21 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.75 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.12 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-47 Score=408.89 Aligned_cols=207 Identities=25% Similarity=0.359 Sum_probs=149.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1156)
.++|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++.+..+ +|.+|||+|++.+++.+||
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchhH
Confidence 45999999999999999999999999999999999999998 9999999999987654 4679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|+.++++... .+.+.+++++++.++|++.+|..+. .
T Consensus 90 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~~-----~ 130 (232)
T d2awna2 90 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK-----A 130 (232)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhCCChhhhhCChh-----h
Confidence 999999876654211 1223467889999999988876654 6
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++|+.++|+..++.++||+|++|++|++
T Consensus 131 LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~i 209 (232)
T d2awna2 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 209 (232)
T ss_dssp ---------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644 45556688999999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
+++|+++++.+
T Consensus 210 v~~G~~~el~~ 220 (232)
T d2awna2 210 AQVGKPLELYH 220 (232)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.3e-47 Score=409.65 Aligned_cols=214 Identities=22% Similarity=0.353 Sum_probs=186.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++.+|+ +..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceec
Confidence 378999998873 4689999999999999999999999999999999999877 5699999999987
Q ss_pred Ch-hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001108 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1156)
Q Consensus 935 ~~-~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 1013 (1156)
.. ...+|.+|||+|++.+++.+||+||+.|.+.++ ..+.++.+++++++++.++|.+.+++.+ .+||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 54 234567999999999999999999999987665 3567788889999999999999988874 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1014 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||+|||||+.+|+||+|||||+|||+.++..|++.|+++.++ |+|||++|||+. ++.++|||+++|++ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999655 999999999997 58899999999996 79999998
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
.
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.9e-48 Score=409.37 Aligned_cols=213 Identities=25% Similarity=0.371 Sum_probs=154.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 46889998873 4679999999999999999999999999999999999877 56999999999875
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..+|.+|||+|++.+++.+||+||+.|+..++. .+.++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHH
Confidence 43 345679999999999999999999999877653 344567788999999999999988874 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|++|||||||+|||+.++..|++.|+++.+ .|+|||++||++. ++.++|||+++|++ |+++..|+.
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 99999999999999999999999999999999999999864 5999999999986 58889999999986 799999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.8e-47 Score=406.11 Aligned_cols=214 Identities=26% Similarity=0.339 Sum_probs=192.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++||+++|. +..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence 478899998883 4679999999999999999999999999999999999877 5689999999875
Q ss_pred Chh-------cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001108 935 KQE-------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1156)
Q Consensus 935 ~~~-------~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 1007 (1156)
... ..++.+|||+|++.++|.+||+||+.|+..++. .+.++.+++++++++.++|.+..++.+ .+
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 321 135679999999999999999999999988763 456788889999999999999888874 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++|||++ ++...|||+++|++ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999987 57889999999986 79
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
+++.|+.
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999985
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.1e-47 Score=408.02 Aligned_cols=207 Identities=25% Similarity=0.353 Sum_probs=176.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1156)
..+|+||||.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++....+ +|.+|||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchH
Confidence 45999999999999999999999999999999999999998 9999999999877655 4679999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
+||+.|++++++... .+.+.+++++++.+||++..|.. +..
T Consensus 96 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRY-----PAQ 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSC-----TTT
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCC-----hhh
Confidence 999999887664321 12234678899999999877754 457
Q ss_pred CChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeE
Q 001108 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1156)
|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+..+ ++|+.++|+..++.++||+|++|++|+|
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876444 5556689999999999999999999999
Q ss_pred EEEcChhHHHH
Q 001108 404 VYQGPRELVLE 414 (1156)
Q Consensus 404 v~~G~~~~~~~ 414 (1156)
+++|+++++.+
T Consensus 216 v~~G~~~el~~ 226 (239)
T d1v43a3 216 LQIGSPTEVYL 226 (239)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999999853
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1e-46 Score=401.48 Aligned_cols=219 Identities=23% Similarity=0.361 Sum_probs=189.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++||+++|+... ....+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCCC---------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 67899998886421 23468999999999999999999999999999999999876 57999999998864
Q ss_pred hh---c----ccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCC
Q 001108 936 QE---T----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 1007 (1156)
Q Consensus 936 ~~---~----~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~ 1007 (1156)
.. . +++.+|||+|++.++|.+||+||+.|+..++.....+.+++.+++.+.++.++|.+ ..+..+ .+
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----hh
Confidence 31 1 23469999999999999999999999988776666677788888999999999975 456553 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001108 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1156)
Q Consensus 1008 LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~ 1086 (1156)
|||||||||+|||||+.+|+||||||||+|||+.++..|+++|+++.++ |+|||++|||++ +.++|||+++|++ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4589999999986 79
Q ss_pred EEEecCC
Q 001108 1087 EIYVGPL 1093 (1156)
Q Consensus 1087 ~~~~g~~ 1093 (1156)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9998863
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.9e-47 Score=407.15 Aligned_cols=216 Identities=27% Similarity=0.384 Sum_probs=192.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|+. ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEECC-----------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEe
Confidence 4788999998852 34679999999999999999999999999999999999877 5699999999875
Q ss_pred Ch------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001108 935 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1156)
Q Consensus 935 ~~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 1008 (1156)
.. ...+|.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+..+ .+|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhC
Confidence 32 223567999999999999999999999986544 4567788889999999999999888875 469
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001108 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1156)
Q Consensus 1009 SgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~ 1087 (1156)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.++|||+++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999654 999999999987 58899999999986 699
Q ss_pred EEecCC
Q 001108 1088 IYVGPL 1093 (1156)
Q Consensus 1088 ~~~g~~ 1093 (1156)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEEcCH
Confidence 999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-46 Score=402.57 Aligned_cols=207 Identities=26% Similarity=0.366 Sum_probs=182.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC-------ccceEEEEcCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (1156)
..+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.+|||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchhh
Confidence 45999999999999999999999999999999999999998 999999998875432 14679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 001108 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1156)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1156)
++.+||+||+.|+.+.++... .+.+.+++++++.+||++.+|..+
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~~~~~~~p- 137 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred cchhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-
Confidence 999999999999987765321 122346788999999998777655
Q ss_pred ccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEE
Q 001108 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1156)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1156)
+.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++||.++|+.+++.++||+|++
T Consensus 138 ----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999987644 55566689999999999999999
Q ss_pred EcCCeEEEEcChhHHHH
Q 001108 398 LSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1156)
|++|++++.|+++++.+
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999854
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=7.3e-47 Score=401.37 Aligned_cols=201 Identities=24% Similarity=0.356 Sum_probs=180.3
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc-ceEEEEcCCCCCCCCCCHHH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.+..+. +.+|||+|++.+++.+||+|
T Consensus 15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHHH
Confidence 799999999999999999999999999999999999998 99999999999876553 67999999999999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
|+.|+.+.++... ..+++++++.+||.+..|..+ ..||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS 129 (229)
T d3d31a2 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNP-----LTLS 129 (229)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCCh-----hhCC
Confidence 9999987654321 124567788999998887655 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEE
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1156)
|||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+. .+++|+.++|+..++.++||+|++|++|++++
T Consensus 130 GG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~ 208 (229)
T d3d31a2 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (229)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998664 45566668999999999999999999999999
Q ss_pred EcChhHHH
Q 001108 406 QGPRELVL 413 (1156)
Q Consensus 406 ~G~~~~~~ 413 (1156)
+|+++++.
T Consensus 209 ~g~~~el~ 216 (229)
T d3d31a2 209 VGKPEEIF 216 (229)
T ss_dssp EECHHHHH
T ss_pred EcCHHHHH
Confidence 99999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.9e-47 Score=405.43 Aligned_cols=207 Identities=20% Similarity=0.281 Sum_probs=181.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC------ccceEEEEcCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1156)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+|||+|++.++
T Consensus 18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~ 94 (242)
T d1oxxk2 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94 (242)
T ss_dssp EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred EEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEecccccc
Confidence 56999999999999999999999999999999999999998 999999999875322 146799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 001108 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1156)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1156)
|.+||+||+.|+++..+... .+.+.+++++++.+||++.+|..++
T Consensus 95 p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p~- 139 (242)
T d1oxxk2 95 PNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR- 139 (242)
T ss_dssp TTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-
T ss_pred ccccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcChHhhhhCChh-
Confidence 99999999999987654321 1223467889999999887776554
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEE
Q 001108 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1156)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+.. +++|+.++|+..++.++||+|++|
T Consensus 140 ----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~vm 214 (242)
T d1oxxk2 140 ----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVL 214 (242)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 699999999999999999999999999999999999999999999986644 455666899999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001108 399 SDGQIVYQGPRELVLE 414 (1156)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1156)
++|+|++.|+++++.+
T Consensus 215 ~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 215 VKGKLVQVGKPEDLYD 230 (242)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEEcCHHHHHh
Confidence 9999999999999854
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-46 Score=402.86 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=191.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
|+++|++++|+... ....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~~~~---------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQGT---------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECSS---------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCCC---------eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 67899998886321 23468999999999999999999999999999999999877 56899999998864
Q ss_pred h------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001108 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 936 ~------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 1009 (1156)
. ..+++.+|||+|++.+++.+||+||+.|+..++. .+.++.++++.++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1244679999999999999999999999887653 345677888999999999999888874 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~ 1088 (1156)
|||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++|||+. ++..+|||+++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999766 999999999987 57789999999986 7999
Q ss_pred EecCCC
Q 001108 1089 YVGPLG 1094 (1156)
Q Consensus 1089 ~~g~~~ 1094 (1156)
+.|+..
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
Confidence 999863
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-46 Score=401.89 Aligned_cols=207 Identities=24% Similarity=0.347 Sum_probs=182.8
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc------cceEEEEcCCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDN 236 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~ 236 (1156)
....+|+||||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..... ++.+|||+|++.
T Consensus 16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~ 92 (240)
T d3dhwc1 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92 (240)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhccccccccccc
Confidence 3456999999999999999999999999999999999999998 9999999999876543 257999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 001108 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1156)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1156)
+++.+||+||+.|+.++.+... ++...+++++|+.+||++.+|..+
T Consensus 93 l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~ 138 (240)
T d3dhwc1 93 LLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP 138 (240)
T ss_dssp CCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCB
T ss_pred cCCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh
Confidence 9999999999999987765321 112345788999999998776554
Q ss_pred cccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
+.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++|+.++|+..++..+||+|+
T Consensus 139 -----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~ 212 (240)
T d3dhwc1 139 -----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVA 212 (240)
T ss_dssp -----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEE
Confidence 5699999999999999999999999999999999999999999999987644 4556668999999999999999
Q ss_pred EEcCCeEEEEcChhHH
Q 001108 397 LLSDGQIVYQGPRELV 412 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1156)
+|++|+|++.|+++++
T Consensus 213 vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 213 VISNGELIEQDTVSEV 228 (240)
T ss_dssp EEETTEEEEEEETTTT
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999999987
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2e-46 Score=398.02 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=186.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++|++++|+ + .+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEecc
Confidence 57889998874 1 37999999999999999999999999999999999877 56999999999875
Q ss_pred hh-cccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 936 ~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. ..+|.+|||+|++.++|.+||+||+.|+..++... . +++++++++.+++.++.++.+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhcccc---H---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhc
Confidence 42 34567999999999999999999999998877432 1 346889999999999998874 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|.|||++||++. ++.+.|||+++|++ |+++..|+.
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999865 5999999999987 68889999999986 699999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.3e-45 Score=388.95 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=173.7
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc-------ceEEEEcCCC
Q 001108 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-------RTAAYISQHD 235 (1156)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~-------~~~~yv~Q~d 235 (1156)
....+|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....+ +.+|||+|++
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecch
Confidence 3456999999999999999999999999999999999999998 99999999998776542 4699999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccc
Q 001108 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADT 314 (1156)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt 314 (1156)
.+++.+||+||+.|+...+..+... ..+....+.++|+.+||++ .++.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAMS-------------------------------GEERRKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCCC-------------------------------HHHHHHHHHHHHHHTTCCGGGTTC
T ss_pred hhCcCccHHHHHhHHHHHhccCCCC-------------------------------HHHHHHHHHHHHHhhchhhhhhcC
Confidence 9999999999999998765332110 0112234667889999975 3554
Q ss_pred cccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCe
Q 001108 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1156)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1156)
. +..|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+. .+++||.++|+...+ ++|||
T Consensus 142 ~-----p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a-~~~dr 214 (230)
T d1l2ta_ 142 K-----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINVA-RFGER 214 (230)
T ss_dssp C-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEEECSCHHHH-TTSSE
T ss_pred C-----hhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEECCCHHHH-HhCCE
Confidence 4 4569999999999999999999999999999999999999999999998764 455556677887655 89999
Q ss_pred EEEEcCCeEEEEcCh
Q 001108 395 IILLSDGQIVYQGPR 409 (1156)
Q Consensus 395 iilL~~G~iv~~G~~ 409 (1156)
|++|++|+|+++|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEeccC
Confidence 999999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.5e-45 Score=390.90 Aligned_cols=214 Identities=23% Similarity=0.320 Sum_probs=192.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.|+++|++.+| +++.+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEec
Confidence 47889999887 35789999999999999999999999999999999999876 5699999999886
Q ss_pred Ch--hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001108 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1156)
Q Consensus 935 ~~--~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 1012 (1156)
.. ...++.+|||||++.+++++|+.||+.|.+.++. .+..+.++.++++++.++|.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHH
Confidence 43 3455779999999999999999999999887764 345667788999999999999888875 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecC
Q 001108 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1156)
Q Consensus 1013 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~ 1092 (1156)
|||++|||||+++|+||||||||+|||+.++..++++|++++++|+|||+|||+++ ++...|||+++|++ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999997 58889999999986 79999997
Q ss_pred C
Q 001108 1093 L 1093 (1156)
Q Consensus 1093 ~ 1093 (1156)
+
T Consensus 217 ~ 217 (238)
T d1vpla_ 217 V 217 (238)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.9e-44 Score=387.58 Aligned_cols=213 Identities=22% Similarity=0.332 Sum_probs=184.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.++++|++++|. +..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeEEEEEC-------------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEeccccc
Confidence 578999998873 4679999999999999999999999999999999999876 5699999999986
Q ss_pred Chh---cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCC
Q 001108 935 KQE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 1009 (1156)
Q Consensus 935 ~~~---~~-~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~~~~~~~~LS 1009 (1156)
... .. +..++|+||+..+++.+||+||+.+.+..+. ..+..++.++++++.+ ++.+..++.+ .+||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred ccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCch-----hhCC
Confidence 542 22 2348999999999999999999988765432 2234455667777776 6777777764 4699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001108 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1156)
Q Consensus 1010 gGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~ 1089 (1156)
|||||||+|||||+.+|+||||||||+|||+.++..|+++|++++++|+|||+++|+++ ++.+.|||+++|++ |++++
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~ 219 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999989999999999987 58899999999986 79999
Q ss_pred ecCC
Q 001108 1090 VGPL 1093 (1156)
Q Consensus 1090 ~g~~ 1093 (1156)
.|+.
T Consensus 220 ~g~~ 223 (240)
T d1ji0a_ 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 9985
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5e-44 Score=389.06 Aligned_cols=214 Identities=20% Similarity=0.247 Sum_probs=187.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
|+++|++.+|. +..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEec
Confidence 78899988773 4679999999999999999999999999999999999876 56999999998763
Q ss_pred h----------------hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcc-ccc
Q 001108 936 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQS 998 (1156)
Q Consensus 936 ~----------------~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~ 998 (1156)
. ...++.+|||+|++.+++.+||+||+.++.... ...+.++.++++.++++.++|.+. .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 2 124467999999999999999999999875332 234567778889999999999774 344
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 001108 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1156)
Q Consensus 999 ~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v 1078 (1156)
.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..|+++|+++.++|+|||++|||+. ++..+|||+
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred Cc-----ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEE
Confidence 43 469999999999999999999999999999999999999999999999999999999999987 578899999
Q ss_pred EEEecCcEEEEecCC
Q 001108 1079 FLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1079 ~~l~~Gg~~~~~g~~ 1093 (1156)
++|++ |++++.|+.
T Consensus 220 ~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEET-TEEEEEECH
T ss_pred EEEEC-CEEEEEcCH
Confidence 99986 799999985
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-44 Score=385.34 Aligned_cols=223 Identities=24% Similarity=0.372 Sum_probs=180.1
Q ss_pred eEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 001108 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1156)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1156)
||+|+||+|.|.. ....+|+||||+|++|+.++|+||||||||||+++
T Consensus 1 eI~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~l 48 (241)
T d2pmka1 1 DITFRNIRFRYKP--------------------------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48 (241)
T ss_dssp EEEEEEEEEESST--------------------------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEEEEEeCC--------------------------------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 6899999999732 22459999999999999999999999999999999
Q ss_pred HhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcC
Q 001108 198 LAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274 (1156)
Q Consensus 198 L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1156)
|+|+++|+ +|+|.+||+++..... ++.++||+|++.+| ..||+|||.|+... ...+...+.++.. +
T Consensus 49 l~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~----~~~~~~~~~~~~~---~ 117 (241)
T d2pmka1 49 IQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLANPG----MSVEKVIYAAKLA---G 117 (241)
T ss_dssp HTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTSTT----CCHHHHHHHHHHH---T
T ss_pred HHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccC-CccccccccccCcc----ccHHHHHHHHHHH---h
Confidence 99999998 9999999999987654 47899999987655 67999999886421 1111111111111 0
Q ss_pred CCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCC
Q 001108 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354 (1156)
Q Consensus 275 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgL 354 (1156)
. . -....++...+|.+|..+ ..|||||||||+|||||+.+|+||+||||||+|
T Consensus 118 ~------------------------~--~~i~~~~~~~~t~i~~~g-~~LSGGq~QRvalARal~~~p~ililDEpts~L 170 (241)
T d2pmka1 118 A------------------------H--DFISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170 (241)
T ss_dssp C------------------------H--HHHTTSTTGGGSBCSTTT-TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC
T ss_pred h------------------------H--HHHHhhhcchhhhcCCCC-CccCHHHHHHHhhhhhhhcccchhhhhCCcccc
Confidence 0 0 113346778899998765 569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 355 D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
|+.++..|++.|+++. .++| +|.++|+.. ..+.||+|++|++|+|+++|+++++++
T Consensus 171 D~~~~~~i~~~l~~l~--~~~T-vi~itH~l~-~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 171 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLS-TVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp CHHHHHHHHHHHHHHH--TTSE-EEEECSSGG-GGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHh--CCCE-EEEEECCHH-HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999874 3445 455777765 457899999999999999999999875
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.7e-44 Score=379.16 Aligned_cols=199 Identities=24% Similarity=0.346 Sum_probs=174.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001108 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1156)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1156)
|||++++ +++++|+|||||||||||++|+|+++|+ +|+|.+||.++....+ ++.+|||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 8999995 6899999999999999999999999998 9999999999987655 467999999999999999999999
Q ss_pred HHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 001108 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1156)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1156)
|+.+.. . + .+.+.+++++++.+||.+..|..+ ..|||||
T Consensus 93 ~~l~~~--~-~---------------------------------~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E-R---------------------------------VERDRRVREMAEKLGIAHLLDRKP-----ARLSGGE 131 (240)
T ss_dssp TTCTTS--C-H---------------------------------HHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHH
T ss_pred hhhccc--C-H---------------------------------HHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHH
Confidence 975321 1 0 112345788999999998777554 4699999
Q ss_pred HHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcC
Q 001108 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1156)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1156)
||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.| |+.++|+..++.++||+|++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~t-vi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999987654444 5558899999999999999999999999999
Q ss_pred hhHHHH
Q 001108 409 RELVLE 414 (1156)
Q Consensus 409 ~~~~~~ 414 (1156)
++++.+
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8e-44 Score=388.11 Aligned_cols=217 Identities=24% Similarity=0.272 Sum_probs=188.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
-++++||+.+|. +..+|+||||++++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEec
Confidence 378899987773 4679999999999999999999999999999999999876 5689999999986
Q ss_pred Chh---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhhC----------CCCCChHHHHHHHHHHHHHcCCCccccccc
Q 001108 935 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRL----------SPEVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1156)
Q Consensus 935 ~~~---~-~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~----------~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 1000 (1156)
... . .++.++|+||++.+++.+||+||+.++...+. ......++..+++.++++.+++.+..++.+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 532 2 23459999999999999999999988653321 112234455677889999999999888775
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 001108 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1156)
Q Consensus 1001 ~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~ 1080 (1156)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..|++.|++++++|+|||+++|+++ ++.++|||+++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 4 69999999999999999999999999999999999999999999999989999999999998 58899999999
Q ss_pred EecCcEEEEecCC
Q 001108 1081 MKRGGQEIYVGPL 1093 (1156)
Q Consensus 1081 l~~Gg~~~~~g~~ 1093 (1156)
|++ |+++..|+.
T Consensus 223 m~~-G~iv~~g~~ 234 (254)
T d1g6ha_ 223 MFN-GQIIAEGRG 234 (254)
T ss_dssp EET-TEEEEEEES
T ss_pred EeC-CEEEEEecH
Confidence 986 799999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-44 Score=388.06 Aligned_cols=228 Identities=22% Similarity=0.369 Sum_probs=182.5
Q ss_pred ceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHH
Q 001108 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (1156)
Q Consensus 117 ~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~ 196 (1156)
..|+|+||++.|.. +....+|+||||+|++||+++|+||||||||||++
T Consensus 10 g~I~~~nvsf~Y~~-------------------------------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ 58 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPN-------------------------------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAA 58 (251)
T ss_dssp CCEEEEEEEECCTT-------------------------------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHH
T ss_pred ceEEEEEEEEECCC-------------------------------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 46999999998731 12345999999999999999999999999999999
Q ss_pred HHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhc
Q 001108 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1156)
Q Consensus 197 ~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1156)
+|+|+++|+ +|+|++||+++..... ++.++||+|++.+| ..||+||+.|+..... ..+...+.....
T Consensus 59 li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~~~~---~~~~~~~~~~~~--- 128 (251)
T d1jj7a_ 59 LLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQKP---TMEEITAAAVKS--- 128 (251)
T ss_dssp HHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCSSCC---CHHHHHHHHHHH---
T ss_pred HHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhcccccccc-Ccchhhhhhhhhcccc---hHHHHHHHHHHH---
Confidence 999999998 9999999999877654 47899999998766 5799999998743211 111111111110
Q ss_pred CCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCC
Q 001108 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1156)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1156)
...-...+|++..+|.+++. ...|||||||||+|||||+.+|+|||||||||+
T Consensus 129 --------------------------~~~~~i~~l~~g~~~~i~~~-~~~LSGGqkQRvaiARal~~~p~ililDEpTs~ 181 (251)
T d1jj7a_ 129 --------------------------GAHSFISGLPQGYDTEVDEA-GSQLSGGQRQAVALARALIRKPCVLILDDATSA 181 (251)
T ss_dssp --------------------------TCHHHHHTSTTGGGCBCCSS-CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred --------------------------HHHHHHHhccccchhhHhcc-CccCChhHceEEEEeeccccCCcEEEecCcCcc
Confidence 00111346778889999865 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 354 LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
||+.+...|++.|+++.+..+ +++|.++|+.. ..+.||+|++|++|+|+++|+++++++
T Consensus 182 LD~~~~~~i~~~l~~l~~~~~-~Tvi~itH~l~-~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 182 LDANSQLQVEQLLYESPERYS-RSVLLITQHLS-LVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp CCHHHHHHHHHHHHTCGGGGG-CEEEEECSCHH-HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cChhhHHHHHHHHHHHhhhcC-CEEEEEeCCHH-HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999988765434 44555777765 557899999999999999999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.5e-43 Score=374.83 Aligned_cols=207 Identities=25% Similarity=0.301 Sum_probs=181.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcC--ccceEEEEcCCCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1156)
+++|+||||.+++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.+.. .++.++||||++.+++++|
T Consensus 15 ~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~lt 91 (238)
T d1vpla_ 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 91 (238)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCCcc
Confidence 45999999999999999999999999999999999999998 999999999876532 2477999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.|...+.+... .+....++.+++.++|.+..+..++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (238)
T d1vpla_ 92 GIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 132 (238)
T ss_dssp HHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHhCCCHHHHhhhhh-----
Confidence 9999999876543211 1122356778899999988887665
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+||+||+++|++|||||||+|||+.++.+|++.|++++. .+ ++|+.++|+..++..+||||++|++|+
T Consensus 133 ~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g-~tii~~tH~l~~~~~~~drv~vl~~G~ 210 (238)
T d1vpla_ 133 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EG-LTILVSSHNMLEVEFLCDRIALIHNGT 210 (238)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT-CEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999765 44 555558899999999999999999999
Q ss_pred EEEEcChhHHHHH
Q 001108 403 IVYQGPRELVLEF 415 (1156)
Q Consensus 403 iv~~G~~~~~~~~ 415 (1156)
+++.|+++++.+.
T Consensus 211 iv~~g~~~el~~~ 223 (238)
T d1vpla_ 211 IVETGTVEELKER 223 (238)
T ss_dssp EEEEEEHHHHHHH
T ss_pred EEEEcCHHHHHhc
Confidence 9999999999764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.7e-43 Score=378.93 Aligned_cols=204 Identities=23% Similarity=0.348 Sum_probs=173.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1156)
+.+|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++...... ..++|++|+..+++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCCc
Confidence 45999999999999999999999999999999999999998 99999999998765432 349999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-CCccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDE 319 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (1156)
+||+||+.+++....... .....++.+++.+ +|.+..|..++
T Consensus 96 ltv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~-- 138 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHHHHTTTTSBSS--
T ss_pred ccHHHHHHHHHHhcCCHH-----------------------------------HHHHHHHHHHHHhhChHHHHhCchh--
Confidence 999999988764432110 0111234445555 57776776554
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEc
Q 001108 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1156)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.. . +++|+.++|+..++.++||+|++|+
T Consensus 139 ---~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~~tH~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999865 4 4555568999999999999999999
Q ss_pred CCeEEEEcChhHHH
Q 001108 400 DGQIVYQGPRELVL 413 (1156)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1156)
+|++++.|+++++.
T Consensus 214 ~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999999885
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.7e-43 Score=378.85 Aligned_cols=207 Identities=23% Similarity=0.327 Sum_probs=175.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc----------------cceE
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----------------QRTA 228 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~----------------~~~~ 228 (1156)
..+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence 35999999999999999999999999999999999999998 9999999999854321 2569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcC
Q 001108 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1156)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1156)
|||+|++.+++.+||+||+.|+.. ..+.. ..+...++.++++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KHDARERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------------------------------HHHHHHHHHHHHHHTT
T ss_pred EEEEechhhccchhcchhhhhhHHHhcCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 999999999999999999998742 22211 0112235677899999
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhh
Q 001108 308 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1156)
Q Consensus 308 L~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~ 387 (1156)
|.+..+ ++.+..|||||||||+|||+|+.+|++|||||||+|||+.++.+|++.|+++.. .+ ++|+.++|+..+
T Consensus 138 l~~~~~----~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~til~vtHdl~~ 211 (258)
T d1b0ua_ 138 IDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGF 211 (258)
T ss_dssp CCHHHH----TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHHH
T ss_pred Cchhhh----ccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cC-CceEEEeCCHHH
Confidence 976332 233457999999999999999999999999999999999999999999999865 44 456668999999
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
+..+||||++|++|+|++.|+++++..
T Consensus 212 ~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999854
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-43 Score=377.50 Aligned_cols=193 Identities=23% Similarity=0.366 Sum_probs=173.1
Q ss_pred eeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChh-cccceEEEeccCCCCCCCCCHHHHHHH
Q 001108 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLF 964 (1156)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~~Tv~e~l~~ 964 (1156)
||||++. ||++||+||||||||||+++|+|... +.+|+|.++|.++... ..+|.+|||||++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 8999995 68999999999999999999999887 5699999999987542 345679999999999999999999998
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 001108 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1156)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1044 (1156)
+. + ..+..+.+++++++++.++|.+..+..+ .+|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 3356677888999999999999988874 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1045 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1045 ~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
.+++.|+++.++ |.|||++||+++ ++.+.|||+++|++ |+++..|+.
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 999999999765 999999999987 68889999999986 699999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=9.6e-44 Score=385.71 Aligned_cols=230 Identities=23% Similarity=0.369 Sum_probs=184.3
Q ss_pred CCCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCc
Q 001108 111 GIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSG 190 (1156)
Q Consensus 111 ~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsG 190 (1156)
.++..+.+|+|+||+|.|.. ...++|+|||++|++|++++|+||||||
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsG 56 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYND--------------------------------NEAPILKDINLSIEKGETVAFVGMSGGG 56 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCS--------------------------------SSCCSEEEEEEEECTTCEEEEECSTTSS
T ss_pred CCCCCCCEEEEEEEEEEeCC--------------------------------CCCcceeceEEEEcCCCEEEEECCCCCc
Confidence 34555678999999998732 1235899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHH
Q 001108 191 KTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267 (1156)
Q Consensus 191 KSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~ 267 (1156)
||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+| ..||+|||.|+... ...+.+.+++
T Consensus 57 KSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~----~~~~~~~~al 128 (255)
T d2hyda1 57 KSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPT----ATDEEVVEAA 128 (255)
T ss_dssp HHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSS----CCHHHHHHHH
T ss_pred HHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCC-CCCHHHHHhccCcC----CCHHHHHHHH
Confidence 999999999999998 9999999999877653 47899999987655 67999999987421 1111222221
Q ss_pred HHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCcccee
Q 001108 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347 (1156)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllL 347 (1156)
+. .++ .. ....|++..||.+|+.+ ..|||||||||+|||||+.+|+||+|
T Consensus 129 ~~---~~l------------------------~~--~i~~lp~gl~t~i~~~g-~~LSgGq~QRi~iARal~~~p~ilil 178 (255)
T d2hyda1 129 KM---ANA------------------------HD--FIMNLPQGYDTEVGERG-VKLSGGQKQRLSIARIFLNNPPILIL 178 (255)
T ss_dssp HH---TTC------------------------HH--HHHTSTTGGGCBCCGGG-TTSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HH---hCC------------------------HH--HHHhccccccchhcCCC-CCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 110 01 12357888999999765 46999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 348 DEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
|||||+||+.++..|++.|+++. .++|+| .++|... ....||+|++|++|+|++.|+++++++
T Consensus 179 DEpts~LD~~t~~~i~~~l~~l~--~~~TvI-~itH~~~-~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 179 DEATSALDLESESIIQEALDVLS--KDRTTL-IVAHRLS-TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHT--TTSEEE-EECSSGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred eCccccCCHHHHHHHHHHHHHHh--cCCEEE-EEeCCHH-HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998864 345554 4677665 557899999999999999999999875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.5e-43 Score=382.16 Aligned_cols=219 Identities=26% Similarity=0.348 Sum_probs=182.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc----ceEEEEcCCCCCCCC
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1156)
.++|+||||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +.++|++|++.+++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCCC
Confidence 45999999999999999999999999999999999999998 99999999998776553 349999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 001108 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1156)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1156)
+||+||+.++....+..... .... ... .+ ..++...+++.+++.+++.+..|+.++
T Consensus 94 ltv~enl~~~~~~~~~~~~~----~~~~---~~~-~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 149 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLN----SLFY---KKW-IP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG--- 149 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHH----HHHH---CSS-CC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred Ceeeeeeeehhhhccccchh----hhhh---hcc-cc-------------cHHHHHHHHHHHHHhcCcchhccCchh---
Confidence 99999999986554321100 0000 000 00 111223457788999999988887766
Q ss_pred cCCCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.. . +++|+.++|+.+++.++||+|++|++
T Consensus 150 --~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 150 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhCCEEEEEeC
Confidence 4999999999999999999999999999999999999999999999754 3 56666789999999999999999999
Q ss_pred CeEEEEcChhHHHH
Q 001108 401 GQIVYQGPRELVLE 414 (1156)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1156)
|++++.|+++|+.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEecHHHHhh
Confidence 99999999988654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=8.7e-44 Score=384.32 Aligned_cols=208 Identities=24% Similarity=0.349 Sum_probs=167.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1156)
.+|+||||+|++|++++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|+ .|
T Consensus 16 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 91 (242)
T d1mv5a_ 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (242)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCC-cc
Confidence 4899999999999999999999999999999999999998 9999999999877543 578999999887665 59
Q ss_pred HHHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 001108 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1156)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1156)
|+||+.++..... ..+...+..+.. ... -....+++..+|.+|+.+.
T Consensus 92 i~eNi~~~~~~~~---~~~~~~~~~~~~---~~~--------------------------~~~~~~~~~~~~~i~~~g~- 138 (242)
T d1mv5a_ 92 IRENLTYGLEGDY---TDEDLWQVLDLA---FAR--------------------------SFVENMPDQLNTEVGERGV- 138 (242)
T ss_dssp HHHHTTSCTTSCS---CHHHHHHHHHHH---TCT--------------------------TTTTSSTTGGGCEESTTSB-
T ss_pred hhhheeccccccc---chhhHHHHHHHH---Hhh--------------------------hhhccCcccccccccCCCC-
Confidence 9999987643211 111111111111 000 0123567788999997654
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++. .++|+ |.++|+...+ ..||+|++|++|+
T Consensus 139 ~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tv-i~itH~l~~~-~~~D~i~vl~~G~ 214 (242)
T d1mv5a_ 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTT-LVIAHRLSTI-VDADKIYFIEKGQ 214 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEE-EEECCSHHHH-HHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc--CCCEE-EEEECCHHHH-HhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999875 34554 4567776554 6799999999999
Q ss_pred EEEEcChhHHHH
Q 001108 403 IVYQGPRELVLE 414 (1156)
Q Consensus 403 iv~~G~~~~~~~ 414 (1156)
|+++|+++++++
T Consensus 215 iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 215 ITGSGKHNELVA 226 (242)
T ss_dssp ECCCSCHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999999875
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-42 Score=373.00 Aligned_cols=210 Identities=27% Similarity=0.420 Sum_probs=174.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
|+|+||+|+|+. +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred eEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEec
Confidence 789999999852 34579999999999999999999999999999999999876 56899999999875
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-------ccccccCCCCC
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~~~~~~ 1005 (1156)
. ..+++.+|||+|++.+++ .||+||+.|+. +..+.+ .++++++..++.+ -.+..++.. +
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g 137 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQ-G 137 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHH----HHHHHHHHHTCHHHHTTSTTGGGSBCSTT-T
T ss_pred ccchhhhhceEEEEecccccCC-ccccccccccC-----ccccHH----HHHHHHHHHhhHHHHHhhhcchhhhcCCC-C
Confidence 4 446778999999998765 69999998742 222322 2444555544432 234445543 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||++||+++ ..+.||+|++|++ |
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK-G 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEET-T
T ss_pred CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999986 4899999999986 3578999999985 7
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
+++..|+.
T Consensus 214 ~Iv~~G~~ 221 (241)
T d2pmka1 214 KIVEQGKH 221 (241)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-42 Score=378.47 Aligned_cols=230 Identities=23% Similarity=0.383 Sum_probs=182.5
Q ss_pred CCCCcceEEEeeeEEEEEEecCCCcCCchHHHHHHHHHHHHhhhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcH
Q 001108 112 IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191 (1156)
Q Consensus 112 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 191 (1156)
++.++.+|+|+||++.|.. .+.++|+|||+.|++|++++|+|||||||
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~--------------------------------~~~~~L~~isl~i~~Ge~iaivG~sGsGK 54 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPG--------------------------------REVPALRNINLKIPAGKTVALVGRSGSGK 54 (253)
T ss_dssp CSCCCCCEEEEEEEECSSS--------------------------------SSCCSEEEEEEEECTTCEEEEEECTTSSH
T ss_pred cCCCceEEEEEEEEEEeCC--------------------------------CCCceeeceEEEEcCCCEEEEECCCCChH
Confidence 4456778999999998732 22459999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCceeEEEEcCccCCCcCc---cceEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhhHhHHHHH
Q 001108 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR 268 (1156)
Q Consensus 192 STLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~ 268 (1156)
|||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.++ ..|+++|+.|+.... ...+.+.++++
T Consensus 55 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~~~~---~~~~~i~~a~~ 127 (253)
T d3b60a1 55 STIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLF-NDTVANNIAYARTEE---YSREQIEEAAR 127 (253)
T ss_dssp HHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTTSC---CCHHHHHHHHH
T ss_pred HHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccC-CcchhhhhhhcCccc---CCHHHHHHHHH
Confidence 99999999999998 9999999999887654 36799999977554 679999998863211 11111121111
Q ss_pred HHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHHHHHHHHHHHhcCCccceee
Q 001108 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMD 348 (1156)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLD 348 (1156)
..++ ...++ .|++..+|.+|+. ...|||||||||+|||||+.+|+||+||
T Consensus 128 ---~~~l------------------------~~~i~--~l~~gl~t~~~~~-~~~LSGGqkQRvaiARal~~~p~ililD 177 (253)
T d3b60a1 128 ---MAYA------------------------MDFIN--KMDNGLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILILD 177 (253)
T ss_dssp ---TTTC------------------------HHHHH--HSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ---HHhH------------------------HHHHH--hccccchhhhcCC-CCCcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 1100 11111 3667788999875 4579999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001108 349 EISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1156)
Q Consensus 349 EptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1156)
||||+||+.++..|++.|+++. .++| +|.++|+... .+.||+|++|++|+|+++|+++++++
T Consensus 178 Epts~LD~~~~~~i~~~l~~l~--~~~T-vi~itH~l~~-~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 178 EATSALDTESERAIQAALDELQ--KNRT-SLVIAHRLST-IEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHH--TTSE-EEEECSCGGG-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHhc--cCCE-EEEEECCHHH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999874 3445 4557777654 57899999999999999999999875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=4.6e-43 Score=378.60 Aligned_cols=210 Identities=27% Similarity=0.381 Sum_probs=173.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCC
Q 001108 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1156)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1156)
++++||+|+|+. .+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 689999999852 2358999999999999999999999999999999999876 56899999999875
Q ss_pred h---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCc-------ccccccCCCCC
Q 001108 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLPGV 1005 (1156)
Q Consensus 936 ~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~~~~~~ 1005 (1156)
. ..+++.+|||+|++.+++. ||+||+.++.. ..... +.++++++..++.. ..+..++.. +
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccch----hhHHHHHHHHHhhhhhccCcccccccccCC-C
Confidence 4 3466789999999988875 99999976421 12222 23445555555443 233445543 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg 1085 (1156)
..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||++||+++ ....||++++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999986 5899999999975 4567999999986 7
Q ss_pred EEEEecCC
Q 001108 1086 QEIYVGPL 1093 (1156)
Q Consensus 1086 ~~~~~g~~ 1093 (1156)
++++.|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
Confidence 99999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.3e-42 Score=372.67 Aligned_cols=214 Identities=24% Similarity=0.379 Sum_probs=178.6
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcC
Q 001108 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1156)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1156)
..+.++|+||+|+|+. ....+|+||||+|++||++||+||||||||||+++|+|... +.+|.|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g 79 (255)
T d2hyda1 13 KQGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDG 79 (255)
T ss_dssp CSCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETT
T ss_pred CCCEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCC
Confidence 4457999999999853 23468999999999999999999999999999999999877 5689999999
Q ss_pred ccCCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccC
Q 001108 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVG 1001 (1156)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~ 1001 (1156)
.++.. ..+++.+|||+|++.+++ .||+|||.|+. +.... +.+.++++.+++.+.. ++.++
T Consensus 80 ~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~ 149 (255)
T d2hyda1 80 HNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG 149 (255)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC-----cCCCH----HHHHHHHHHhCCHHHHHhccccccchhc
Confidence 88654 456778999999998775 69999998752 22222 3456777777775432 33444
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1002 ~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
.. +..||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|||++||+++ ....||+|++|
T Consensus 150 ~~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l 225 (255)
T d2hyda1 150 ER-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVI 225 (255)
T ss_dssp GG-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEE
T ss_pred CC-CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHHhCCEEEEE
Confidence 32 35799999999999999999999999999999999999999999999886 4899999999986 35789999999
Q ss_pred ecCcEEEEecCC
Q 001108 1082 KRGGQEIYVGPL 1093 (1156)
Q Consensus 1082 ~~Gg~~~~~g~~ 1093 (1156)
++ |+++..|+.
T Consensus 226 ~~-G~iv~~G~~ 236 (255)
T d2hyda1 226 EN-GHIVETGTH 236 (255)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEEEECCH
Confidence 85 799999985
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-41 Score=368.51 Aligned_cols=217 Identities=22% Similarity=0.306 Sum_probs=173.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
..++|+||+|+|+.. .+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 10 g~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~ 77 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKP 77 (251)
T ss_dssp CCEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEECCCC----------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEe
Confidence 369999999999632 23468999999999999999999999999999999999877 568999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHH-----HHHHHHHHcCCCcccccccCCCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM-----FIDEVMELVELNPLRQSLVGLPGV 1005 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~-----~v~~~l~~l~l~~~~~~~~~~~~~ 1005 (1156)
+.. ..+++.++||+|++.+++ .||+||+.|+... ........+ ...+.++ .+..-.+..++.. +
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~ 149 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-G 149 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-C
T ss_pred cchhhhHHHHHHhhhccccccccC-cchhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc-C
Confidence 754 346678999999998875 6999999876321 122221111 1112222 2333334444432 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 001108 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~G 1084 (1156)
..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.++ |+|||++||+++ ..+.||+|++|++
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~- 226 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG- 226 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-
T ss_pred ccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998654 899999999975 5678999999986
Q ss_pred cEEEEecCC
Q 001108 1085 GQEIYVGPL 1093 (1156)
Q Consensus 1085 g~~~~~g~~ 1093 (1156)
|+++..|+.
T Consensus 227 G~iv~~Gt~ 235 (251)
T d1jj7a_ 227 GAIREGGTH 235 (251)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 799999985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-41 Score=368.36 Aligned_cols=213 Identities=22% Similarity=0.307 Sum_probs=176.5
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCcc
Q 001108 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1156)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1156)
+.|+|+||+|+|+. .+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred eEEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcc
Confidence 46999999999863 23458999999999999999999999999999999999876 568999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001108 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1156)
Q Consensus 934 ~~~---~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 1003 (1156)
+.. ..+++.++||+|++.++. .|+++|+.++. +...+. +.++++++..++.+.. ++.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~----~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred cchhhhhhhhheEEEEeeccccCC-cchhhhhhhcC----cccCCH----HHHHHHHHHHhHHHHHHhccccchhhhcCC
Confidence 654 346677999999998775 69999998752 112222 3456666666655432 3444433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1004 ~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
+..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||++||+++ ..+.||+|++|++
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHH--HHHhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999986 4899999999986 3578999999986
Q ss_pred CcEEEEecCC
Q 001108 1084 GGQEIYVGPL 1093 (1156)
Q Consensus 1084 Gg~~~~~g~~ 1093 (1156)
|++++.|+.
T Consensus 226 -G~Iv~~G~~ 234 (253)
T d3b60a1 226 -GIIVERGTH 234 (253)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999985
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-40 Score=364.23 Aligned_cols=198 Identities=21% Similarity=0.310 Sum_probs=157.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHH
Q 001108 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1156)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1156)
.+||+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++| +++||+|++.+++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccC-ceee
Confidence 45999999999999999999999999999999999999998 99999998 3899999876665 6999
Q ss_pred HHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 001108 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1156)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1156)
||+.|+.... . ....+..+. . +.......+++..++.+|+.. ..|
T Consensus 115 eni~~~~~~~----~-~~~~~~~~~---~--------------------------~~~~~i~~l~~~~~~~~~~~~-~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD----E-YRYKSVVKA---C--------------------------QLQQDITKFAEQDNTVLGEGG-VTL 159 (281)
T ss_dssp HHHTTTSCCC----H-HHHHHHHHH---T--------------------------TCHHHHTTSTTGGGCEECTTC-TTS
T ss_pred cccccccccc----c-hHHHHHHHH---H--------------------------HhHHHHHhchhhhhhhhhhhc-cCC
Confidence 9998874321 0 011111110 0 011234567778889888654 469
Q ss_pred ChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCeEE
Q 001108 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1156)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1156)
||||||||+|||||+.+|+||||||||++||+.+..+|++.+.... ..++|+ |.++|+. +..+.||+|++|++|+|+
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tv-i~itH~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTR-ILVTSKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEE-EEECSCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCEE-EEEechH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999997643222 234454 4467766 456889999999999999
Q ss_pred EEcChhHHHH
Q 001108 405 YQGPRELVLE 414 (1156)
Q Consensus 405 ~~G~~~~~~~ 414 (1156)
++|++++++.
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-39 Score=345.67 Aligned_cols=193 Identities=22% Similarity=0.367 Sum_probs=166.9
Q ss_pred EeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCCHH
Q 001108 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 959 (1156)
Q Consensus 883 ~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~~Tv~ 959 (1156)
+|+||||+|++||++||+||||||||||+++|+|... .+|+|.++|.++.. ...+...+|++|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 5999999999999999999999999999999999753 47999999987643 23344679999988777778999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEe
Q 001108 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1032 (1156)
Q Consensus 960 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~-------~p~illLD 1032 (1156)
+++.+... . +.+.+.++++++.+++.+..++.+ ..|||||||||+|||+|++ +|+||+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccc----h----hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 99876531 1 123456889999999998887764 4699999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||+|||+.++..++++|+++.++|+|||+++|+++ ++.+.|||+++|++ |++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999987 58899999999985 799999975
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.2e-37 Score=325.49 Aligned_cols=195 Identities=19% Similarity=0.278 Sum_probs=162.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccC
Q 001108 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1156)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1156)
.|+++|+++.|+ +++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEeh
Confidence 478999998874 258999999999999999999999999999999999877 5799999999987
Q ss_pred ChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001108 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1156)
Q Consensus 935 ~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 1014 (1156)
.. .+..++|+||+..++..+|+.|++.+.+.++... .+. +.+.+.++.+++.++.+. +.+|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~------~~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKKK------LGELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTSB------GGGSCHHHHH
T ss_pred hH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cCH----HHHHHHHHHcCCcccccc------cCcCCCcHHH
Confidence 54 4567899999999999999999999887776432 222 346678888888765443 2469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEec
Q 001108 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1156)
Q Consensus 1015 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~~d~v~~l~~ 1083 (1156)
|++|||||+.+|+++||||||+|||+.++..+++.|+++.++ |.+||+++|+. ++||.+.+|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 999999999999999999999999999999999999998765 44444444443 46999988764
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-37 Score=343.38 Aligned_cols=186 Identities=22% Similarity=0.342 Sum_probs=151.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHH
Q 001108 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1156)
Q Consensus 881 ~~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e 960 (1156)
+++|+||||+|++||++||+||||||||||+++|+|... +.+|.|.++| .++||+|++.+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG----------RVSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCS----------CEEEECSSCCCCS-EEHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECC----------EEEEEeccccccC-ceeec
Confidence 479999999999999999999999999999999999877 5689999988 3899999998876 59999
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001108 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-------NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1156)
Q Consensus 961 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDE 1033 (1156)
|+.|+.. .... ..+++++.+++ .+..+..++.. ..+|||||||||+|||||+++|+||||||
T Consensus 116 ni~~~~~------~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGVS------YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred ccccccc------ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 9987531 1221 23344444433 33334444433 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
|||+||+.+...|++.+......|+|||++||+++ ..+.||+|++|++ |++++.|+.
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~-G~i~~~Gt~ 241 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQ-GSSYFYGTF 241 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECH
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999998764444456899999999974 5688999999986 799999985
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-37 Score=331.25 Aligned_cols=197 Identities=24% Similarity=0.344 Sum_probs=167.6
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCcc---ceEEEEcCCCCCCCCCCH
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTV 243 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTV 243 (1156)
.|+||||.|++||+++|+||||||||||+++|+|+. |+ +|+|.++|+++.....+ ...+|++|+.......++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCccccH
Confidence 699999999999999999999999999999999976 45 89999999988665543 458999998877778899
Q ss_pred HHHHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 001108 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1156)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1156)
.+++.+...-+ .....++++++.++|.+..+..+. .
T Consensus 90 ~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~-----~ 125 (231)
T d1l7vc_ 90 WHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTN-----Q 125 (231)
T ss_dssp HHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----G
T ss_pred HHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcChh-----h
Confidence 99988753211 012345677888999887776554 5
Q ss_pred CChhHHHHHHHHHHHhc-------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 324 ISGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 324 LSGGqrqRvsia~al~~-------~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
|||||||||+||++|+. +|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.++||+|+
T Consensus 126 LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri~ 203 (231)
T d1l7vc_ 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRAW 203 (231)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBCC
T ss_pred cCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHCCEEE
Confidence 99999999999999986 6799999999999999999999999999864 4 4556667899999999999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001108 397 LLSDGQIVYQGPRELVL 413 (1156)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1156)
+|++|+++++|+++++.
T Consensus 204 vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 204 LLKGGKMLASGRREEVL 220 (231)
T ss_dssp BEETTEECCCSBHHHHS
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.2e-36 Score=314.93 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=151.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCCCCCHHH
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1156)
+||+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+. +..++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHHH
Confidence 4999999999999999999999999999999999999998 99999999998653 567999999998999999999
Q ss_pred HHHHHhhhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 001108 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1156)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1156)
++.+...+.+..... ..+...++.+++.+. +..+ ..||
T Consensus 90 ~l~~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~~~-~~~~-----~~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVNK------------------------------------NEIMDALESVEVLDL-KKKL-----GELS 127 (200)
T ss_dssp HHHHHHHHTTCCCCH------------------------------------HHHHHHHHHTTCCCT-TSBG-----GGSC
T ss_pred HHHHHHHhcCCccCH------------------------------------HHHHHHHHHcCCccc-cccc-----CcCC
Confidence 999877665422110 112334566666442 2233 4699
Q ss_pred hhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcC
Q 001108 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1156)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1156)
|||||||+||++|+.+|+++||||||+|||+.++..+++.|+++.+. ++++|++.||+ .++||.+.+|++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSC----CTTSSEEEEGGG
T ss_pred CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEech----hhhcchhhheee
Confidence 99999999999999999999999999999999999999999988763 56777766655 357999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.35 E-value=1.4e-14 Score=147.45 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=60.7
Q ss_pred CCChhHHHHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEEEEcCCe
Q 001108 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1156)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1156)
.+|+|+++|.++++++..+|+++++|||.... .....+.+.|.+.... .+++++.++|. .....++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~-~~~~il~~~h~-~~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHD-PNVNVVATIPI-RDVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTC-TTSEEEEECCS-SCCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhcc-CCCEEEEEEcc-HHHHHhhceEEEEeCCE
Confidence 48999999999999999999999999985443 3344556666665443 34445545554 35678899999999999
Q ss_pred EEEEcC
Q 001108 403 IVYQGP 408 (1156)
Q Consensus 403 iv~~G~ 408 (1156)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
Confidence 987553
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.33 E-value=7.7e-14 Score=141.93 Aligned_cols=161 Identities=17% Similarity=0.068 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEEEcCccCChhcccceEEEeccCCCCCCCCCHHHHHHHHHHhhCCCCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~~Tv~e~l~~~~~lr~~~~~~ 975 (1156)
.++|+||||||||||+++|+|... +..|.+.+.+.+...... ..++............ ............
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIF------SSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC--------CCEEEEEETTCCEEEE------EETTCCCSSEET
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHHH--hhhhhhhhhhHHHHHH------hhhhhhhhhhhh
Confidence 489999999999999999999765 347888887754322111 1122111000000000 000000000000
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001108 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1156)
Q Consensus 976 ~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1055 (1156)
. .+.. .+ ...+|+|+++|.++++++..+|++|++|||+...+ ....+++.+.++.+
T Consensus 72 ~-------------~~~~--~~-------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 S-------------YGVN--VQ-------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp T-------------EEEC--HH-------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred h-------------hhcC--cc-------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhc
Confidence 0 0000 00 11379999999999999999999999999854433 33445555555543
Q ss_pred -CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEecCC
Q 001108 1056 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1156)
Q Consensus 1056 -~g~tvi~~~H~~~~~i~~~~d~v~~l~~Gg~~~~~g~~ 1093 (1156)
.+.|||+++|+.+ ....+|++..+. +|+++..++.
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred cCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECCc
Confidence 4899999999975 456788887776 4788877664
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.88 E-value=1.3e-08 Score=112.07 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1006 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL----~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
..+|.|||+.+.++..+ ..+|.++++|||-++|+|.....+.+.|++..+ +.-||+|||.|. +.+.+|+++.+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEEE
Confidence 46899999998887654 345789999999999999999999999998864 678999999986 56889998663
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=1.6e-07 Score=102.90 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=59.7
Q ss_pred cCCCChhHHHHHHHHHH----HhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 321 IRGISGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~a----l~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
...+|+|||+.+.++.. ...++.++++|||-++|++.....+.+.|++.+. +.-+|++ .|++.+.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qviit--THsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVI--THNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEE--CCCTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEE--ECCHHHHHhcccEE
Confidence 45699999999887654 3456789999999999999999999999998642 2333333 35678889999996
Q ss_pred E--EcCC
Q 001108 397 L--LSDG 401 (1156)
Q Consensus 397 l--L~~G 401 (1156)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 5566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=1.3e-07 Score=108.35 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 001108 1006 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1156)
Q Consensus 1006 ~~LSgGqrqrl~iA~aL----~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~v~~l 1081 (1156)
..||||||.++++|..+ ..++++++||||+++||+..+..+.+.|+++...+.-+|+|||+|. +.+.+|+.+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 35899999998877544 3566799999999999999999999999988766677999999984 78899998755
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=5.7e-06 Score=94.20 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=59.1
Q ss_pred cCCCChhHHHHHHHHHHH----hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhHHhhcCeEE
Q 001108 321 IRGISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1156)
Q Consensus 321 ~~~LSGGqrqRvsia~al----~~~p~vllLDEptsgLD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1156)
+..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++ ...+-+|+++|. +++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~--~~~~Q~I~iTH~-~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR--NPDLQFIVISLK-NTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC--BTTBEEEEECSC-HHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEeCC-HHHHHhcccEE
Confidence 356899999998887433 46778999999999999999999999998764 234545555554 67999999987
Q ss_pred EE
Q 001108 397 LL 398 (1156)
Q Consensus 397 lL 398 (1156)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.53 E-value=0.00035 Score=72.04 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=36.0
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCCc
Q 001108 1022 LVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1022 L~~~p~illLDEPTsgLD~~~~~~i-~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
.+.+..++++||+..|=|+.....+ ...++.+.+.+..++++||..+
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 3456679999999999999765544 4455667777899999999853
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.45 E-value=0.00013 Score=75.29 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=32.5
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEEecChhhHHhh
Q 001108 339 VGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPAPETYDL 391 (1156)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~-L~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1156)
+++..++++||+.+|=|+.....+... +..+.. .+..++++. |. .++..+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tT-H~-~eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFAT-HY-FELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEEC-CC-HHHHTC
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEee-ec-hhhhhh
Confidence 455679999999999999888777754 444443 455555544 44 344443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00033 Score=72.76 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=30.4
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEEecC
Q 001108 339 VGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQP 384 (1156)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~-L~~~~~~~~~t~ii~i~q~ 384 (1156)
..+..++++||+.+|=++.....+... ++.+... ....++..||.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~ 163 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHY 163 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhcc-ccceEEEecch
Confidence 445579999999999999988888754 5555443 33334434444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.0013 Score=68.02 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=35.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCcH
Q 001108 1023 VANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDT-GRTVVCTIHQPSI 1069 (1156)
Q Consensus 1023 ~~~p~illLDEPTsgLD~~~~~~i~-~~l~~~~~~-g~tvi~~~H~~~~ 1069 (1156)
+.+..++++||+..|=++.....+. ..++.+..+ ++.+|++||....
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 4456799999999999998776654 456667554 5789999997643
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.92 E-value=0.003 Score=66.77 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=27.1
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
|+.+.+-+.+|+++.|.|++|+|||||+.-|+-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 444444579999999999999999999877763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.68 E-value=0.00043 Score=70.94 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEE
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 213 (1156)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 36789999999999999999999876543 67764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.64 E-value=0.006 Score=64.35 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=28.1
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1156)
-|+++.+=+.||+++.|.|+||+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3555544579999999999999999999888874
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.00043 Score=67.36 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.53 E-value=0.00059 Score=66.74 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.|++++|.|||||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.35 E-value=0.00064 Score=67.55 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
|+++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.33 E-value=0.0052 Score=63.29 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+=+++|+++.|.||||||||||+.-++-.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999999999999998777654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.32 E-value=0.0006 Score=66.57 Aligned_cols=39 Identities=31% Similarity=0.272 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~ 217 (1156)
++++|+|++|||||||++.|...+......-|.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 478999999999999999999887654333455554444
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0001 Score=74.01 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=29.4
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
-+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 356777888776 99999999999999999997544
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.00011 Score=73.83 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=27.5
Q ss_pred eeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 56778888887 99999999999999999985
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.20 E-value=0.0011 Score=67.91 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
+|..++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 47889999999999999999999854
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.18 E-value=0.00047 Score=70.90 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEE
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 213 (1156)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 36788999999999999999999986543 67765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0012 Score=64.14 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+.+.++.|+|||||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999998763
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.10 E-value=0.0012 Score=64.32 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
++|.++.|+|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.05 E-value=0.0012 Score=65.41 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
|.++.|+||||||||||++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 889999999999999999999754
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.019 Score=60.02 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=31.8
Q ss_pred HhcCCccceeecCCC---C--CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001108 338 MVGPALALFMDEIST---G--LDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (1156)
Q Consensus 338 l~~~p~vllLDEpts---g--LD~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~ 385 (1156)
...+++++++|--++ + -|......+++.|+.++...+ ++|+.+||..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~~vi~v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCC-Cceehhhhcc
Confidence 346889999996543 1 266667788888888887555 4555567754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.00048 Score=67.65 Aligned_cols=27 Identities=41% Similarity=0.640 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 358899999999999999999988654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.017 Score=60.56 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=33.1
Q ss_pred HhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 001108 1022 LVANPSIIFMDEPTS-----GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1066 (1156)
Q Consensus 1022 L~~~p~illLDEPTs-----gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1066 (1156)
-..+|+++++|--+. --|......+++.|+.++. .|+|||++.|.
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 457899999996542 1256666777888887764 48999999885
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.92 E-value=0.0016 Score=63.86 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+.++|.||+|||||||.+.|+-.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0015 Score=63.27 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
+++|+|++|||||||++.|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.85 E-value=0.002 Score=61.29 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+++.|.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999988643
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.84 E-value=0.0016 Score=63.00 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.69 E-value=0.087 Score=52.95 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=25.7
Q ss_pred eece-eEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001108 168 LKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALA 199 (1156)
Q Consensus 168 L~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~ 199 (1156)
|+++ .+=+++|+++.|.|+||+|||||+.-++
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4443 3569999999999999999999975443
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.68 E-value=0.0021 Score=62.45 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+++.|.|||||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999875
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.67 E-value=0.0025 Score=61.91 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+|-.++|.|||||||||+.+.|+-.+.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 556789999999999999999998763
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0026 Score=64.49 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+|.++.|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999987654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.58 E-value=0.0012 Score=67.63 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCCCCCCeEEEEEE
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 928 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~ 928 (1156)
+|..++++|+||+|||||+|.|.|... ..+|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 477889999999999999999998542 2245554
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.57 E-value=0.0025 Score=61.66 Aligned_cols=22 Identities=55% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|+|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999765
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.51 E-value=0.003 Score=61.33 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.49 E-value=0.11 Score=52.28 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=37.6
Q ss_pred cCCCEEEEeCCCCCC----C-HHHHHHHHHHHHHHHhCCCEEEEEecCCcH--------HHHHhcCeEEEEe
Q 001108 1024 ANPSIIFMDEPTSGL----D-ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI--------DIFEAFDELFLMK 1082 (1156)
Q Consensus 1024 ~~p~illLDEPTsgL----D-~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~--------~i~~~~d~v~~l~ 1082 (1156)
.+|+++++|=-+.-. + ......+...++...+.|+|++++.|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 379999999665432 2 233344445555555679999999996531 2334578887775
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.47 E-value=0.0028 Score=63.22 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|||||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.0041 Score=62.28 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=26.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
|=+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999998887653
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0037 Score=63.27 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.|.++.|+||||+|||||++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999998753
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0037 Score=60.49 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+.+.++.|+|++||||||+.+.|+.+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.21 E-value=0.0043 Score=60.64 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
++++|.|++||||||+.+.|+-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999877643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.18 E-value=0.0044 Score=61.67 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0029 Score=62.65 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.|.++.|+|+|||||||+.+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999998764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.17 E-value=0.004 Score=60.43 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC-CCCeEEEEEEEcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISG 931 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~-~~~~~~G~i~i~g 931 (1156)
+++|+|++|||||||++.|.... ..|..-|.|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 78999999999999999887632 2233345554443
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.0044 Score=59.03 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+.|+||+||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998763
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.11 E-value=0.0042 Score=61.92 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++|||++|||||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999854
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.04 E-value=0.0048 Score=63.44 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+++|+||+|||||||++.|...+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998644
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.03 E-value=0.0037 Score=62.42 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.+.++.|+|||||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998765
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.01 E-value=0.0054 Score=60.82 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|-.+.|+|||||||||+.+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356677899999999999999999654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.98 E-value=0.008 Score=59.12 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.91 E-value=0.006 Score=59.31 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.90 E-value=0.0051 Score=60.40 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|+|||||+++|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.89 E-value=0.0054 Score=59.48 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++|.++.|+|++||||||+-+.|+-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999854
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.88 E-value=0.0039 Score=61.52 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.84 E-value=0.0055 Score=64.09 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
...++|.||||||||||.++|++.+..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 346889999999999999999998753
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.0067 Score=60.46 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++.|+|||||||||+.+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.78 E-value=0.0061 Score=60.25 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999986654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.73 E-value=0.0066 Score=58.73 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++|-.++|.||+||||||+.+.|+-.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999854
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.69 E-value=0.0073 Score=59.16 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhc
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G 200 (1156)
++-+++.++|+|||||||+.+.|+-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456999999999999999998864
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.67 E-value=0.0058 Score=59.51 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..++|.||+|+|||||.+.|+..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.67 E-value=0.0067 Score=59.42 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.0066 Score=60.81 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|||||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999863
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.0077 Score=59.78 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++.|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.59 E-value=0.0053 Score=60.52 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.59 E-value=0.0056 Score=66.35 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
++.|.-++|.||.||||||||++|++.+++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 3455668999999999999999999999875
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.0068 Score=59.76 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+.+.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4789999999999999999986543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.54 E-value=0.007 Score=59.33 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
-++|+|++|+|||||+|.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.0077 Score=59.69 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
++|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987764
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.48 E-value=0.0081 Score=58.00 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+.|+|++||||||+.++|+-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999999998763
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.47 E-value=0.0074 Score=59.80 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998765
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.46 E-value=0.0081 Score=56.83 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHhhhcC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g 916 (1156)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.049 Score=56.61 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHhhhcC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g 916 (1156)
.-+-|.||+|+|||+|.+.|+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 3467999999999999999995
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.0095 Score=56.97 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
|=.++|+|+.|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999854
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.01 Score=56.80 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
-++|+|++|+|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.0098 Score=57.92 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++|+|.+|+|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999986
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.32 E-value=0.0069 Score=59.43 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+||+|++++|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.0097 Score=57.98 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++|+|.+|+|||||+|.|+|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.29 E-value=0.0086 Score=56.84 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.29 E-value=0.0073 Score=58.85 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++|+|++|+|||||++.|.+...
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 477999999999999999988643
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.28 E-value=0.011 Score=57.94 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999873
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.0087 Score=56.82 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.26 E-value=0.01 Score=58.38 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.+.|+|||||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999775
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.23 E-value=0.0088 Score=59.04 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
++||-|++|||||||.+.|.-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.19 E-value=0.0099 Score=57.69 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.15 E-value=0.01 Score=58.99 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
++|+||||||||||.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.15 E-value=0.077 Score=58.86 Aligned_cols=29 Identities=38% Similarity=0.594 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.++-++.|.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 45679999999999999999999987654
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=0.012 Score=60.26 Aligned_cols=29 Identities=34% Similarity=0.482 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
|=+++|+++.|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999877643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.10 E-value=0.011 Score=57.49 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+.|+|++||||||+-+.||-.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999997653
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.08 E-value=0.011 Score=56.99 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
..++.|.|++||||||+.+.|+...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4588999999999999999999754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.07 E-value=0.012 Score=58.94 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+++++|.||||||||.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999997654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.06 E-value=0.0096 Score=58.96 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+.|+||||||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.011 Score=58.09 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+.|+||||+|||||++-|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.97 E-value=0.0086 Score=58.65 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.++.|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999988753
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.01 Score=57.52 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.93 E-value=0.011 Score=57.62 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999874
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.92 E-value=0.033 Score=57.63 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+-|.||.|+|||+|.++|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 579999999999999999963
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.92 E-value=0.012 Score=57.64 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999765
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.92 E-value=0.011 Score=56.42 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|+|++|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998764
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.91 E-value=0.0093 Score=61.14 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.91 E-value=0.013 Score=57.28 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
+++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.012 Score=57.50 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998664
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.89 E-value=0.0087 Score=58.64 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+||+|.+|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999985
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.88 E-value=0.013 Score=57.55 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
=.+||+|..|+|||||++.|+|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.87 E-value=0.012 Score=56.33 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++.|.||+||||||+.+.|+..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.86 E-value=0.013 Score=56.68 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+.|+|++||||||+-+.|+-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999998764
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.85 E-value=0.014 Score=58.00 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999765
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.013 Score=57.53 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.|+||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.012 Score=57.38 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++|+|++++|||||+|.|+|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999854
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.76 E-value=0.022 Score=58.08 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=26.6
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.+=+++|+++.|.|+||+|||||..-++-..
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3559999999999999999999988776543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.0081 Score=58.68 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++++|||||+|+|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.73 E-value=0.014 Score=56.10 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++|+|++|+|||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 378999999999999999988643
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.71 E-value=0.013 Score=57.38 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+||+|++.||||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999975
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.63 E-value=0.028 Score=58.63 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.60 E-value=0.013 Score=56.26 Aligned_cols=20 Identities=50% Similarity=0.601 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHhhhcC
Q 001108 897 TALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g 916 (1156)
+.|+||+||||||+.+.|+-
T Consensus 7 I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999984
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.56 E-value=0.012 Score=63.58 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.56 E-value=0.013 Score=58.11 Aligned_cols=20 Identities=50% Similarity=0.647 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHhhhcC
Q 001108 897 TALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g 916 (1156)
+.|+||||||||||++.|.-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.016 Score=58.34 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|-||+|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.017 Score=58.12 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|.|||||||||+-+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999998874
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.43 E-value=0.02 Score=58.75 Aligned_cols=27 Identities=41% Similarity=0.475 Sum_probs=23.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALA 199 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~ 199 (1156)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 458999999999999999999977554
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.41 E-value=0.017 Score=58.32 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|-|||||||||+.+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 468889999999999999998864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.40 E-value=0.016 Score=58.03 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.014 Score=55.33 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.35 E-value=0.016 Score=56.22 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.34 E-value=0.014 Score=58.36 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.22 E-value=0.017 Score=54.73 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+.|+||+||||||+-+.|+-.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999854
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.012 Score=58.05 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.|.++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999853
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.16 E-value=0.048 Score=56.97 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHH---H-hCCCEEEEEecCCcHHHHHhcCe
Q 001108 1012 QRKRLTIAVELVANPSIIFMDEPT----------SGLDARAAAIVMRTVRNT---V-DTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1012 qrqrl~iA~aL~~~p~illLDEPT----------sgLD~~~~~~i~~~l~~~---~-~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
++-|-.+..|-...|.||++||-- ++......+.+..++..+ . +.+.-||.+|++|.. + |.
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-l----d~ 161 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-I----DP 161 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-T----SC
T ss_pred HHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchh-C----CH
Confidence 333444666677889999999953 233333333333333332 2 235688999998863 2 22
Q ss_pred EEEEecC--cEEEEecCCCC
Q 001108 1078 LFLMKRG--GQEIYVGPLGR 1095 (1156)
Q Consensus 1078 v~~l~~G--g~~~~~g~~~~ 1095 (1156)
-+ +..| .+.++.+++..
T Consensus 162 al-~r~gRf~~~i~~~~p~~ 180 (265)
T d1r7ra3 162 AI-LRPGRLDQLIYIPLPDE 180 (265)
T ss_dssp GG-GSSTTSEEEEECCCCCC
T ss_pred HH-hCCCCccEEEEecchHH
Confidence 11 1222 25677777754
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.10 E-value=0.019 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.02 E-value=0.0067 Score=58.06 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|+|++|+|||||+++|.|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999863
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.01 E-value=0.017 Score=54.64 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+.|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.02 Score=57.54 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
++||-|++||||||+-+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.79 E-value=0.021 Score=59.50 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.78 E-value=0.027 Score=56.69 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=30.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~ 219 (1156)
+.|.++.+.|.||||||||.+.|.-.+... .-.-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCceEEEEcchHH
Confidence 467789999999999999999998665321 0012456777554
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.025 Score=60.45 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCCCCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 239 (1156)
+++|-|++||||||+.+.|...+... .....+..|++|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECC
Confidence 78999999999999999998776421 00124778888877765
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.72 E-value=0.02 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|.+|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999874
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.027 Score=57.79 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1156)
+=+++|+++.|.||||||||||...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999999887764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.028 Score=55.79 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++-|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.59 E-value=0.028 Score=57.97 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+.|.||||+||||+.++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.51 E-value=0.023 Score=61.22 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.49 E-value=0.027 Score=57.40 Aligned_cols=22 Identities=59% Similarity=0.819 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.|.||+|+||||+.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999865
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.47 E-value=0.025 Score=60.75 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
|+.-++++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 334557899999999999999998764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.45 E-value=0.029 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999984
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.43 E-value=0.029 Score=63.09 Aligned_cols=44 Identities=20% Similarity=0.383 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCcCccceEEEEcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH 234 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~ 234 (1156)
=++++||+|+|||-|.+.||+.++- --+..++..++ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeecceee------ecceeecc
Confidence 5789999999999999999998752 34555554433 38999985
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.41 E-value=0.027 Score=57.58 Aligned_cols=26 Identities=46% Similarity=0.670 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDPT 205 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1156)
-+++.||||+||||+.++|+..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 36899999999999999999887643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.40 E-value=0.029 Score=55.44 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
..++.|+||.||||||+-+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.25 E-value=0.03 Score=55.22 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001108 180 LTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1156)
+++|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999863
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.24 E-value=0.027 Score=57.64 Aligned_cols=23 Identities=52% Similarity=0.778 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++.||||+||||+.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.23 E-value=0.027 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998764
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.20 E-value=0.028 Score=54.02 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+.|+|++||||||+-+.|+..
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999854
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.17 E-value=0.029 Score=53.78 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.05 E-value=0.029 Score=54.80 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+||+|...||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.96 E-value=0.031 Score=54.08 Aligned_cols=22 Identities=55% Similarity=0.656 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++++|++|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.94 E-value=0.038 Score=55.41 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+.+++++||+|+||||.+-=||-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999877776653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.89 E-value=0.011 Score=56.57 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|.+|+|||||+|.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.037 Score=55.69 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
+.|.+++|-|+.||||||+.+.|+..+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999887643
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.82 E-value=0.081 Score=51.40 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=28.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
..||.....+ .|.=++|.||||+|||||...|..+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3566555555 8999999999999999999888754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.81 E-value=0.037 Score=55.50 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.+++++||+|+||||++-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999877764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.77 E-value=0.035 Score=56.54 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.77 E-value=0.037 Score=57.26 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.++.++|.||+|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 456899999999999999998876543
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.76 E-value=0.035 Score=57.36 Aligned_cols=25 Identities=44% Similarity=0.597 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.-++|.||||+|||+|.++|+....
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 3578999999999999999998753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.71 E-value=0.036 Score=53.90 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++.|.|++||||||+.+.|+.+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.041 Score=57.17 Aligned_cols=28 Identities=43% Similarity=0.667 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
++..-+++.||||+|||+|.++|+..+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 3445678999999999999999998764
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.03 Score=57.07 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999999875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.54 E-value=0.038 Score=61.48 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.45 E-value=0.039 Score=53.18 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.45 E-value=0.044 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.+.|+|..|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.41 E-value=0.04 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++.|+||.||||||+-+.|+..
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999853
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.36 E-value=0.032 Score=60.10 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcCCCC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 919 (1156)
..++.|.-+.|.|+.||||||||++|.+...
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 3456667789999999999999999997543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.35 E-value=0.041 Score=53.17 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.046 Score=54.72 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999997764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.30 E-value=0.045 Score=53.79 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
++|-.+.|+||.||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677888999999999999999984
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.30 E-value=0.033 Score=58.28 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
++..-++|.||+|+|||+|.++|++.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3445588999999999999999999874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.27 E-value=0.048 Score=56.26 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
...++|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999988754
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.27 E-value=0.047 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
+.-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344799999999999999999886
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.23 E-value=0.037 Score=57.24 Aligned_cols=24 Identities=50% Similarity=0.724 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
-+++.||+|+|||+|.++|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 368999999999999999998754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.17 E-value=0.048 Score=53.78 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.15 E-value=0.036 Score=54.47 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+||.||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.13 E-value=0.042 Score=53.05 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHhhhcC
Q 001108 897 TALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g 916 (1156)
+.|+|++||||||+-+.|+-
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999984
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.08 E-value=0.035 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.04 E-value=0.045 Score=52.34 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001108 181 TLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1156)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997774
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.044 Score=52.58 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999998764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.89 E-value=0.049 Score=55.27 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.|-||+|+|||||.++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999875
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.89 E-value=0.042 Score=55.34 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+..+++++||+|+||||.+-=|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999877774
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.048 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.87 E-value=0.047 Score=52.44 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+.|+|++||||||+-+.|+.+
T Consensus 4 IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999854
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.79 E-value=0.065 Score=53.67 Aligned_cols=26 Identities=38% Similarity=0.327 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
..+++++||+|+||||.+--||-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45889999999999999888886653
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.76 E-value=0.05 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHhhhcC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g 916 (1156)
-++.++|.+|+|||||.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999985
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.73 E-value=0.051 Score=53.44 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHhhhc
Q 001108 895 VLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~ 915 (1156)
-++||.|+.||||||+.+.|.
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999996
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.73 E-value=0.041 Score=54.35 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+.+.++.|+||.||||||+-+.|+-
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.67 E-value=0.045 Score=56.92 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
=++|.||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 478999999999999999999754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.65 E-value=0.058 Score=52.68 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.055 Score=54.33 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+.|-+++|-|+-||||||+.+.|..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999998875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.53 E-value=0.048 Score=60.61 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+||+|.+|+|||||+|.|.|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.50 E-value=2.5 Score=43.39 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.45 E-value=0.3 Score=50.60 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-++.|.++-|-||+|+|||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 5689999999999999999999877775
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.41 E-value=0.073 Score=55.40 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+=+++|++|.|.||||||||||+..++-..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 678999999999999999999987777654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.056 Score=52.19 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.057 Score=53.07 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
++.|+||.||||||.-+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999984
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.33 E-value=0.05 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.29 E-value=0.063 Score=51.76 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++++|+.|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.28 E-value=0.051 Score=54.53 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHhhhcC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+++++||+|+||||.+-=|+-
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999887874
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.25 E-value=0.079 Score=50.47 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
.+||.+++|-|+=|||||||.+.++.-+-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 35899999999999999999999986653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.24 E-value=0.059 Score=54.14 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
+++|.||+||||||+-+.|+-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999995
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.067 Score=51.37 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.22 E-value=0.065 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 892 ~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
++|-++-|.|.+||||||+-+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999974
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.19 E-value=0.057 Score=54.29 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+..+++++||+|+||||.+-=||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999887777654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.16 E-value=0.056 Score=51.71 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987754
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.15 E-value=0.075 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
++|+|...+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998653
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.13 E-value=0.067 Score=53.38 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 001108 180 LTLLLGPPSSGKTTLLLALA 199 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~ 199 (1156)
+++|.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.10 E-value=0.12 Score=50.12 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=27.0
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.||. +...-.|.=++|.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4553 444667889999999999999999887754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.09 E-value=0.034 Score=60.14 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
-++|.||+|+|||||++.|++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4799999999999999999999875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.09 E-value=0.07 Score=53.42 Aligned_cols=23 Identities=43% Similarity=0.432 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
..++.++||+|+||||++-=|+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999888875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.072 Score=51.40 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001108 181 TLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1156)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.01 E-value=0.075 Score=51.00 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
++|+|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 68999999999999999988643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.061 Score=51.80 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001108 180 LTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1156)
-++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999998765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.06 Score=51.56 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001108 180 LTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1156)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.066 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.93 E-value=0.071 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=18.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
...+++++||+|+||||.+-=||-.+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445799999999999999887876543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.06 Score=57.91 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
..-++||.||.|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.92 E-value=0.068 Score=53.98 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+.+-||+|+||||+.++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67899999999999999987653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.90 E-value=0.061 Score=51.79 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.88 E-value=0.068 Score=51.78 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHhhhcC
Q 001108 897 TALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g 916 (1156)
+.|+||.||||||+-+.|+-
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999974
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.78 E-value=0.049 Score=53.06 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++++|++|+|||||++.|.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 669999999999999988654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.77 E-value=0.084 Score=53.10 Aligned_cols=28 Identities=43% Similarity=0.536 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
.|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5889999999999999999999987764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.70 E-value=0.067 Score=53.68 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=16.2
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
...+++++||+|+||||++-=|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999877774
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.70 E-value=0.06 Score=51.75 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHhhhcC
Q 001108 897 TALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g 916 (1156)
++++|..|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999998875
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.69 E-value=0.072 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
+.+++|-|+-||||||+++.|+...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.67 E-value=0.072 Score=53.79 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.+.||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.07 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.65 E-value=0.044 Score=57.63 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 899999999999999998864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.59 E-value=0.11 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
-++|+|-|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.48 E-value=0.099 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
++|+|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCcC
Confidence 68999999999999999987643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.47 E-value=0.073 Score=51.54 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.085 Score=52.75 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001108 180 LTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1156)
+++|.|++||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.45 E-value=0.074 Score=51.81 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.43 E-value=0.063 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|.+|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998876
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.41 E-value=0.16 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++|+|+.|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.41 E-value=0.057 Score=56.00 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
++.|.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.40 E-value=0.17 Score=48.99 Aligned_cols=35 Identities=31% Similarity=0.298 Sum_probs=28.7
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+|.....+ .|.-+.|.|+||+|||||...|..+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3577777777 7788999999999999998887653
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.35 E-value=0.074 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHhhhcC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g 916 (1156)
=++||.|++||||||+-+.|..
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCcHHHHHHHH
Confidence 3899999999999999888864
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.34 E-value=0.073 Score=53.35 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
-.+++++||+|+||||.+-=||-.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999888886654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.33 E-value=0.066 Score=51.59 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++|+|+.|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.30 E-value=0.079 Score=50.47 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001108 181 TLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1156)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.23 E-value=0.095 Score=52.98 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.6
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+=+++|.++-|.|++|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999999876653
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.21 E-value=0.06 Score=51.94 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36699999999999999997654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.15 E-value=0.075 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.15 E-value=0.083 Score=51.40 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+||.||||||+-+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999985
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.10 E-value=0.068 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
..+-|.||.|+|||||.+.|++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.09 E-value=0.076 Score=51.18 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001108 181 TLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1156)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.04 E-value=0.15 Score=49.14 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=27.7
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
-||. ++..-.|.=++|.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4555 556678999999999999999998777654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.99 E-value=0.059 Score=52.02 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=8.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.97 E-value=0.077 Score=51.57 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++++|++|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5779999999999999998753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.96 E-value=0.077 Score=52.29 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999987754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.89 E-value=0.076 Score=54.34 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999998764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.86 E-value=0.091 Score=50.09 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.85 E-value=0.073 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=21.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++. ++||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEeCCCccHHHHHHHHHhh
Confidence 4433 4999999999999999999873
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.85 E-value=0.1 Score=49.67 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 891 FRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 891 i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+||.++.|-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHh
Confidence 46999999999999999999999884
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.83 E-value=0.088 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+||.||||||..+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.82 E-value=0.076 Score=51.31 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998765
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.77 E-value=0.054 Score=56.92 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999987654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.61 E-value=0.21 Score=48.37 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=27.2
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..||+.-..+ .|.=+.|+|+||+|||||.-.|..+
T Consensus 3 ~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 3 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3566666655 5678999999999999998877643
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.45 E-value=0.097 Score=50.03 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001108 181 TLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1156)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.43 E-value=0.1 Score=52.06 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
.|.+++|-|+-||||||+++.|..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999985
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.42 E-value=0.098 Score=50.00 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001108 181 TLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1156)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999874
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.41 E-value=0.1 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.37 E-value=0.097 Score=52.23 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++|.||.||||||+-+.|+..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999853
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.31 E-value=0.11 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998853
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.27 E-value=0.1 Score=49.79 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.23 E-value=0.094 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999988754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.16 E-value=0.11 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.|.+++|=|+-||||||+.+.|+-..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68899999999999999999998543
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.087 Score=50.33 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|..|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.11 E-value=0.11 Score=50.48 Aligned_cols=21 Identities=43% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+||.||||||+-+.|+-
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999984
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.074 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.96 E-value=0.11 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.93 E-value=0.12 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+++|-|+-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.83 E-value=0.1 Score=50.20 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987643
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.81 E-value=0.13 Score=51.82 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|+++-|.|++|+|||||..-++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999877763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.75 E-value=0.11 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 001108 181 TLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+||+|-|-+|||||+|+|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999863
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.73 E-value=0.13 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+++|-|++|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998886554
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.71 E-value=0.11 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999976644
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.66 E-value=0.12 Score=51.47 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHhhhc
Q 001108 896 LTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~ 915 (1156)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999996
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.64 E-value=0.11 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999987754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.12 Score=49.55 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 001108 181 TLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1156)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.46 E-value=0.12 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
.-.+||.||-|||||||++.|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.44 E-value=0.1 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.++|++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998775
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=0.12 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999875
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.35 E-value=0.12 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.35 E-value=0.087 Score=57.47 Aligned_cols=28 Identities=43% Similarity=0.411 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
+.+..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4566899999999999999999999874
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.26 E-value=0.12 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
-++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999998843
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.23 E-value=0.11 Score=49.97 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.23 E-value=0.15 Score=51.76 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=23.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
+=+++|+++-|.||+|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999999976543
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.15 E-value=0.13 Score=49.31 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001108 180 LTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1156)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.12 E-value=0.11 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|..|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.10 E-value=0.11 Score=50.49 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.03 E-value=0.14 Score=49.19 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
++.|+|..|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.01 E-value=0.13 Score=49.22 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999987753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.12 Score=49.41 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.95 E-value=0.14 Score=48.63 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.86 E-value=0.14 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|.-+||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.82 E-value=0.14 Score=52.57 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 893 PGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 893 ~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.++.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 356789999999999999998874
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.81 E-value=0.15 Score=48.93 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHhhhcC
Q 001108 897 TALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g 916 (1156)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.72 E-value=0.14 Score=49.56 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+||.||||||+.+.|+-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366899999999999999984
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.12 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=86.67 E-value=0.13 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.+.|+|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57799999999999999998643
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.15 Score=53.40 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999875
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.50 E-value=0.13 Score=51.82 Aligned_cols=20 Identities=40% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHhhhcC
Q 001108 897 TALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g 916 (1156)
+-|.||+|+|||||.++|+.
T Consensus 48 lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67999999999999999985
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.49 E-value=0.14 Score=50.95 Aligned_cols=22 Identities=36% Similarity=0.240 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
-++|+|+.+||||||++.|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3799999999999999999643
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.48 E-value=0.15 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+||.||||||+-+.|+-
T Consensus 8 rIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.46 E-value=0.24 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++|+|-|-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999976
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.41 E-value=0.16 Score=48.47 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.39 E-value=3.7 Score=42.06 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHhhhcC
Q 001108 894 GVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 894 Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998853
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.31 E-value=0.18 Score=51.07 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+-+++|.++.|.|++|+|||||..-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999877764
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.27 E-value=0.18 Score=53.81 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG 216 (1156)
|...++++||+|+|||.|.+.||-.+. .--|.+|-
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~ 85 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDM 85 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc-----CCeeEecc
Confidence 455678999999999999999998764 23455554
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.26 E-value=0.13 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.19 E-value=0.16 Score=50.65 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHhhhc
Q 001108 896 LTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~ 915 (1156)
++||.|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 78999999999999999986
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.11 E-value=0.18 Score=52.67 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
-+++|+||-++|||||||.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999854
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.01 E-value=0.16 Score=48.91 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+.|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988753
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.96 E-value=0.17 Score=49.52 Aligned_cols=20 Identities=45% Similarity=0.612 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 001108 180 LTLLLGPPSSGKTTLLLALA 199 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~ 199 (1156)
.++|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999883
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.92 E-value=0.17 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.++++|++|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.90 E-value=0.16 Score=49.81 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHhhhcC
Q 001108 897 TALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g 916 (1156)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998775
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.81 E-value=0.17 Score=55.89 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 001108 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1156)
Q Consensus 1017 ~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~~d~ 1077 (1156)
+|..+|=.+|++|++.|.. |++++...+ +.+.+|+.|+.|.|-.+ .+...+|
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhh
Confidence 3555667899999999996 666666554 44568999999999765 3444444
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.73 E-value=0.17 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
.++|+|.-+||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999974
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.67 E-value=0.18 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.+-|.||+|+||||+.++|+..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999964
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.63 E-value=0.18 Score=51.08 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhc
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1156)
+-+++|.++-|.|++|+|||||.-.++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999999987665
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.61 E-value=0.17 Score=48.17 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.58 E-value=0.18 Score=49.87 Aligned_cols=22 Identities=55% Similarity=0.847 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+++|-|.-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.55 E-value=0.15 Score=48.61 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.52 E-value=0.19 Score=53.56 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
|.-.+++.||||+|||.|.++|++.+.
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHhc
Confidence 444677789999999999999999853
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.44 E-value=0.18 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 899999999999999887643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.42 E-value=0.13 Score=49.39 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=9.0
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998876
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.25 E-value=0.19 Score=52.61 Aligned_cols=30 Identities=37% Similarity=0.620 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1156)
+.+-.|+..+|+|++|+|||||+..|+.-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999999998643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.24 E-value=0.16 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.-+.++||+|+|||+|.++|+..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 34569999999999999999964
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.16 E-value=0.19 Score=48.20 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHhhhcC
Q 001108 897 TALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g 916 (1156)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.12 E-value=0.19 Score=48.28 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.10 E-value=0.19 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHhhhcCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
.++|+|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.92 E-value=0.2 Score=51.97 Aligned_cols=29 Identities=41% Similarity=0.621 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
+=++.|+++.|.||+|+|||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 56889999999999999999997666543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.91 E-value=0.18 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 001108 181 TLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++|+|++|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887644
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.86 E-value=0.2 Score=50.38 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cCCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALA-GKLDPT 205 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~-G~~~~~ 205 (1156)
.++|+|++|+|||||++-+. +...|+
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pT 34 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLT 34 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence 57899999999999999874 444454
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.82 E-value=0.2 Score=52.49 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHhhhc
Q 001108 895 VLTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~ 915 (1156)
=++||-|+.|||||||-+.|.
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeECCCCCCHHHHHHHHH
Confidence 389999999999999988775
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.82 E-value=0.17 Score=48.29 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.80 E-value=0.26 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHH---hcCCCC
Q 001108 180 LTLLLGPPSSGKTTLLLAL---AGKLDP 204 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L---~G~~~~ 204 (1156)
-++|+|+.|||||||..+| +|..+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 5799999999999999998 566554
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.76 E-value=0.18 Score=50.95 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999999875
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.49 E-value=0.22 Score=48.65 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHhhhc
Q 001108 896 LTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~ 915 (1156)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999883
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.37 E-value=0.22 Score=47.51 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999884
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.24 E-value=0.21 Score=49.00 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+||+|.-.||||||++.|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999984
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.21 E-value=0.27 Score=51.05 Aligned_cols=31 Identities=48% Similarity=0.724 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
|=++.|++|-|-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 6789999999999999999999988887643
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.11 E-value=0.23 Score=47.38 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=84.02 E-value=0.23 Score=47.34 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.92 E-value=0.23 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999998764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.90 E-value=0.23 Score=51.95 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHhhhcC
Q 001108 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 889 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 916 (1156)
+.|-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 3578999999999999999999999885
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=0.24 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.90 E-value=0.23 Score=48.02 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001108 180 LTLLLGPPSSGKTTLLLALAG 200 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1156)
.++++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999986654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.87 E-value=0.21 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+-|.||+|+||||+.++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 579999999999999999853
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.86 E-value=0.2 Score=47.92 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.70 E-value=0.35 Score=47.84 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1156)
-++|+|...+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.22 E-value=0.22 Score=48.10 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHhhhcC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g 916 (1156)
=.++++|..|+|||||++-+.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999997765
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=83.21 E-value=0.23 Score=50.12 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+-+.||.|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 569999999999999999853
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.19 E-value=0.26 Score=49.48 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHhhhc
Q 001108 896 LTALMGVSGAGKTTLMDVLA 915 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~ 915 (1156)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999875
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.17 E-value=0.26 Score=49.25 Aligned_cols=49 Identities=6% Similarity=0.062 Sum_probs=33.5
Q ss_pred hcCCccceeecCCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhhH
Q 001108 339 VGPALALFMDEISTGL-DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1156)
Q Consensus 339 ~~~p~vllLDEptsgL-D~~~~~~i~~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1156)
+...+++++|+.=.=. +......++..+.... ..++.+|++...+..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHh-hccceEEEecCCcchhc
Confidence 4567899999884432 4666777777776644 36778888777666544
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=83.05 E-value=0.43 Score=45.76 Aligned_cols=35 Identities=34% Similarity=0.294 Sum_probs=26.6
Q ss_pred EEeeeeeEEEeCCeEEEEEcCCCCcHHHHHhhhcCC
Q 001108 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 882 ~~L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+-||..... -.|.=+.|.|+||+|||||.-.|..+
T Consensus 4 t~~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHGVLVD-VYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEESEEEE-ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 356665554 46788999999999999998766643
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.04 E-value=0.28 Score=50.79 Aligned_cols=20 Identities=50% Similarity=0.527 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 001108 180 LTLLLGPPSSGKTTLLLALA 199 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~ 199 (1156)
-++|+|+.|||||||..+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 57999999999999999994
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.60 E-value=0.33 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
.+++|.|+.||||||..+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.40 E-value=0.3 Score=46.39 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+|..|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998875
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.12 E-value=0.3 Score=47.17 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.+.|+|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.95 E-value=0.27 Score=52.23 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEE--eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001108 1007 GLSTEQRKRLTIAVELVANPSIIFM--DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1156)
Q Consensus 1007 ~LSgGqrqrl~iA~aL~~~p~illL--DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1068 (1156)
.++..+.+++....-+...|-++.+ +|.. ....+-+..+...+.+..|+.++....
T Consensus 197 ~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~------~~e~~~~~~~~~~~~~~~vi~~sa~~E 254 (319)
T d1wxqa1 197 KWSQDDLLAFASEIRRVNKPMVIAANKADAA------SDEQIKRLVREEEKRGYIVIPTSAAAE 254 (319)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEECGGGS------CHHHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred hcCHHHHHHhHHHhhhhcCchhhhcccccch------hhHHHHHHHHHHhhcCCEEEEecHHHH
Confidence 4678888888887777888877664 3322 234444555555566778777766543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.60 E-value=0.32 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHhhhcC
Q 001108 896 LTALMGVSGAGKTTLMDVLAG 916 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g 916 (1156)
.++|+|..|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988765
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.51 E-value=0.36 Score=48.75 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC
Q 001108 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1156)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1156)
++++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 47889999999999999999987654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.38 E-value=0.33 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++++|.-+||||||+|.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.37 E-value=0.33 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHhhhcCCC
Q 001108 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1156)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~ 918 (1156)
.++++|.-.||||||+|+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.21 E-value=0.34 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHhhhcCC
Q 001108 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 895 e~~al~G~nGaGKTTLl~~L~g~ 917 (1156)
..+.|.||.|+||||+++.|+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999863
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=80.75 E-value=0.32 Score=49.09 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHhhhcCC
Q 001108 897 TALMGVSGAGKTTLMDVLAGR 917 (1156)
Q Consensus 897 ~al~G~nGaGKTTLl~~L~g~ 917 (1156)
+-+.||.|.||||+.++|++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999963
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.12 E-value=0.38 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001108 180 LTLLLGPPSSGKTTLLLALAGK 201 (1156)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1156)
-+.|+|..|+|||||++-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999998644
|