Citrus Sinensis ID: 001111
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1154 | 2.2.26 [Sep-21-2011] | |||||||
| Q32PW3 | 1191 | Transcription initiation | yes | no | 0.710 | 0.688 | 0.285 | 1e-85 | |
| Q6P1X5 | 1199 | Transcription initiation | yes | no | 0.710 | 0.683 | 0.276 | 2e-84 | |
| Q5ZIT8 | 1168 | Transcription initiation | yes | no | 0.710 | 0.702 | 0.278 | 2e-84 | |
| Q8C176 | 1104 | Transcription initiation | no | no | 0.709 | 0.741 | 0.278 | 3e-83 | |
| Q24325 | 1221 | Transcription initiation | yes | no | 0.720 | 0.681 | 0.272 | 9e-83 | |
| P87121 | 1172 | Transcription initiation | yes | no | 0.679 | 0.668 | 0.247 | 3e-63 | |
| P23255 | 1407 | Transcription initiation | yes | no | 0.441 | 0.362 | 0.274 | 3e-48 | |
| Q97VF1 | 784 | Probable aminopeptidase 1 | yes | no | 0.290 | 0.427 | 0.209 | 2e-10 | |
| P95928 | 785 | Leucyl aminopeptidase OS= | no | no | 0.282 | 0.415 | 0.224 | 3e-10 | |
| Q96ZT9 | 786 | Probable aminopeptidase 1 | yes | no | 0.287 | 0.422 | 0.214 | 6e-10 |
| >sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio GN=taf2 PE=2 SV=2 | Back alignment and function desciption |
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Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 265/929 (28%), Positives = 442/929 (47%), Gaps = 109/929 (11%)
Query: 21 VRHQKLCLS-IDMEKHQIYGYTELEI--AVPDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
+ HQ +C++ ++ ++ + GY EL I V ++ + L+++ I V V+ F Y
Sbjct: 17 LTHQVVCINNVNFQRKSVIGYVELTIFPTVVNLNRIKLNSKQCRIYRVRVNDLEAPFIYN 76
Query: 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALEREL---VPNLLINCCKPFKGLTDQ 134
+ +E + R++ S+ A +AV A EL VP+ L +G +
Sbjct: 77 DPTLEVCHHESKQRNLNYFSSAYTAAVSAVDPDAGNGELSIKVPSELWK-----QGDEMK 131
Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCID 194
+ ++ +E LD +PK + V D E H NQ +R WFPC+D
Sbjct: 132 VMKVYIEFSLD---QPKGGLHFVVPDVEGNMAERAAH----VFSFGNQ-NSSRFWFPCVD 183
Query: 195 DTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254
++ C + LEFTV +++AVS G L+ V + D +KTY Y L +P +A I++AV P
Sbjct: 184 SYSELCTWKLEFTVDASMVAVSCGDLVETVYTHD-MRKKTYHYMLPIPTAAPNISMAVGP 242
Query: 255 FEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM 314
FE+L D + ++H CLP + + +T+ + H F YE L ++P+ +K VF+ E
Sbjct: 243 FEILVDPYMHEVTHFCLPQLLPLLKHTMSYLHEIFEFYEEILTCRYPYSCFKTVFVD-EA 301
Query: 315 AVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLD 374
V S++ A+M IFS+ +L+ +IDQ T L+ ALA+Q+FG +I+ DEW+L
Sbjct: 302 YVQVSSY-ASMSIFSTNLLHSGLIIDQTPMTRSFLAQALAQQFFGCFISRMSWADEWVLK 360
Query: 375 GLAGFLTDSFIKKFLGNNEARY---------RRYKANCAVC---------KADDSGATAL 416
G++G++ ++KK G NE R+ Y+ K D+ L
Sbjct: 361 GISGYIYGLYLKKTFGVNEYRHWIKEELDKIVEYELKIGGVLLHPTFSGGKEKDNPTPHL 420
Query: 417 SSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVR 476
S + + K+ CK+ +++++E ++ F ++ ++S A AS +
Sbjct: 421 HFSIKHPHTLSWE----YYKMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQK 476
Query: 477 ---------TLSTKEF-RHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNI 526
+ST F + +N G P +K+ WV G F++N+++N+
Sbjct: 477 YQSHMWSQMLVSTSGFLKSISNVSGKDIGPLIKQ----WVDQSGVVKFFGSFAFNRKRNV 532
Query: 527 VELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGD 586
+EL + +D T G + G + + V ELDG ++H L + +
Sbjct: 533 LELEIRQDYT------------------SSGTQKYVGPIKVTVQELDGSFNH-TLQIEEN 573
Query: 587 AWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS-SMESPLSWIRADPEM 645
+ + +I CHSK + K NG+ V +D+ + +SPL WIR DP+M
Sbjct: 574 SLKH-DIPCHSKSRRNKKKKIPLM--------NGEEV-DMDLSAMDADSPLLWIRIDPDM 623
Query: 646 EYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFW 705
L ++ F Q MW QL + DVVAQ +AI ALE P + L + L + F+
Sbjct: 624 SILRKVEFEQADFMWQYQLRYERDVVAQEEAILALEKFP--TPPSRRALTDILEQDQCFY 681
Query: 706 RVRIEAAYALANTA-SEETDWAGLLHLVKFYKSRRF--DENIGLPRPNDFRDFSEYFVLE 762
+VR+ A + LA A S + W G + + +R F + + N+F F YF+ +
Sbjct: 682 KVRMHACFCLAKIANSMVSTWTGPPAMKSLF-TRMFCCKSCPNIVKTNNFISFQSYFLQK 740
Query: 763 AIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLA----ALVQSVGELEF 818
IP A+A +R N PRE + F+L L+KYNDN N +SD ++ A AL S+
Sbjct: 741 TIPVAMAQLRDVQNLCPREVLSFILDLIKYNDNRKNKFSDNYYRAELIDALTNSLTPAIS 800
Query: 819 GQQSILFLSSL-------LKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL 871
+ + SL L+ I R L ++L+PSY +T+SC+R + L+ +G I
Sbjct: 801 INNEVRTVDSLNADVRLILEEITRFLNMEKLLPSYRNTITVSCLRAIRM--LQKNGHIPS 858
Query: 872 DQVVKLIKPFRDFNTIWQVRVEASRALLD 900
D L K + ++ VR+ A A++D
Sbjct: 859 DPT--LFKSYAEYGHFVDVRIAALEAVID 885
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Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter. Danio rerio (taxid: 7955) |
| >sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus GN=TAF2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus GN=Taf2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila melanogaster GN=Taf2 PE=1 SV=2 | Back alignment and function description |
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| >sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf2 PE=3 SV=3 | Back alignment and function description |
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| >sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q97VF1|APE1_SULSO Probable aminopeptidase 1 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P95928|APE2_SULSO Leucyl aminopeptidase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96ZT9|APE1_SULTO Probable aminopeptidase 1 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=ape1 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1154 | ||||||
| 225455842 | 1345 | PREDICTED: transcription initiation fact | 0.917 | 0.787 | 0.794 | 0.0 | |
| 224132980 | 1359 | predicted protein [Populus trichocarpa] | 0.926 | 0.786 | 0.767 | 0.0 | |
| 225455844 | 1325 | PREDICTED: transcription initiation fact | 0.900 | 0.784 | 0.778 | 0.0 | |
| 356513902 | 1388 | PREDICTED: transcription initiation fact | 0.909 | 0.755 | 0.751 | 0.0 | |
| 356563105 | 1388 | PREDICTED: transcription initiation fact | 0.896 | 0.744 | 0.764 | 0.0 | |
| 356563107 | 1368 | PREDICTED: transcription initiation fact | 0.878 | 0.741 | 0.749 | 0.0 | |
| 449439379 | 1362 | PREDICTED: transcription initiation fact | 0.913 | 0.773 | 0.702 | 0.0 | |
| 449516818 | 1362 | PREDICTED: transcription initiation fact | 0.913 | 0.773 | 0.702 | 0.0 | |
| 297842145 | 1390 | membrane alanyl aminopeptidase [Arabidop | 0.898 | 0.746 | 0.689 | 0.0 | |
| 22330618 | 1390 | TBP-associated factor 2 [Arabidopsis tha | 0.877 | 0.728 | 0.702 | 0.0 |
| >gi|225455842|ref|XP_002273382.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1756 bits (4547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1067 (79%), Positives = 941/1067 (88%), Gaps = 8/1067 (0%)
Query: 1 MAKPRKPKNEE-TKVENSG--AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHA 57
MAKPRKPK ++ TK ENS AVVRHQKLCLSID++K +IYGYTELEIAVPDIGIVGLHA
Sbjct: 1 MAKPRKPKTDDNTKPENSNSRAVVRHQKLCLSIDIDKRRIYGYTELEIAVPDIGIVGLHA 60
Query: 58 ENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELV 117
ENL IESV VDGEPTEFE+YPH HQ+ E+EKRW S++S+ SSAAD A+++Y+SALEREL
Sbjct: 61 ENLVIESVSVDGEPTEFEFYPH-HQHTESEKRWSSVLSA-SSAADVASSMYVSALERELD 118
Query: 118 PNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNAL 177
PNLLI CCKP K ++Q Q +LEN L SS EPKQNVKLVR+DYWVE+ E GIHF+ N L
Sbjct: 119 PNLLIMCCKPEKSASEQQGQQSLENGLHSSGEPKQNVKLVRVDYWVERAETGIHFEDNVL 178
Query: 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVY 237
HTDNQIRRARCWFPC+DDT+Q CCYDLEFTV+ NL+AVS GSLLYQVLSKDDPPRKTYVY
Sbjct: 179 HTDNQIRRARCWFPCMDDTSQCCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVY 238
Query: 238 RLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLD 297
+L+VPV+A+WI LAVAPFEVLPD H L+S++CLPAN+ K+ NTV FFH+AFSHYE YL
Sbjct: 239 KLNVPVTARWIQLAVAPFEVLPDRHSGLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLS 298
Query: 298 AKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQW 357
A FPFGSYKQVF+APEMA+SS T GA+M IFSSQIL+DEKVIDQ IDT IKL++ALARQW
Sbjct: 299 ASFPFGSYKQVFIAPEMAISSLTLGASMSIFSSQILFDEKVIDQTIDTRIKLAYALARQW 358
Query: 358 FGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALS 417
FGV+I+PE PNDEWLLDGLAGFLTDSF+K+FLGNNEARYRRYKANCAVCKADDSGATALS
Sbjct: 359 FGVFISPEAPNDEWLLDGLAGFLTDSFVKRFLGNNEARYRRYKANCAVCKADDSGATALS 418
Query: 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS-PVR 476
SSASCKDLYGTQCIG++GKIRS KSVAILQMLEKQMG FRKILQ I+ RAQ + +R
Sbjct: 419 SSASCKDLYGTQCIGLYGKIRSWKSVAILQMLEKQMGPESFRKILQTIVFRAQDTTRSLR 478
Query: 477 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536
TLSTKEFRHFANKVGNLERPFLKEFFPRWVG+CGCPVLR G SYNKRKN+VELAVLR CT
Sbjct: 479 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGSCGCPVLRAGLSYNKRKNLVELAVLRGCT 538
Query: 537 VKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCH 596
PD+ T VL+ N DSENR+ DIGWPGMMSIRVHELDGMYDHPILPMAG+ WQLLEIQCH
Sbjct: 539 AAPDTNTMVLNGNIDSENREVDIGWPGMMSIRVHELDGMYDHPILPMAGETWQLLEIQCH 598
Query: 597 SKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP 656
SKLAARR KPKKGSKPDG DDNGD V +DMRS+ ESPL W+R DPE+EYLAEIHFNQP
Sbjct: 599 SKLAARRFQKPKKGSKPDGSDDNGD-VPAVDMRSNTESPLLWLRVDPELEYLAEIHFNQP 657
Query: 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 716
QMWINQLE+D DVVAQAQAIA LEALP LSF+VVN LNNFLSDSKAFWRVRIEAA+ALA
Sbjct: 658 AQMWINQLERDKDVVAQAQAIATLEALPQLSFSVVNALNNFLSDSKAFWRVRIEAAFALA 717
Query: 717 NTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN 776
NTASEETDWAGLLHLVKFYKSRRFD NIGLP+PNDF DF EYFVLEAIPHA+AMVRAAD
Sbjct: 718 NTASEETDWAGLLHLVKFYKSRRFDANIGLPKPNDFHDFPEYFVLEAIPHAIAMVRAADK 777
Query: 777 KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL 836
KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL
Sbjct: 778 KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL 837
Query: 837 LQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896
LQFDRLMPSYNGILTISCIRTLTQI LKLSGFI LD+V++L+KPFRDF IWQVR+EASR
Sbjct: 838 LQFDRLMPSYNGILTISCIRTLTQIGLKLSGFIPLDRVIELVKPFRDFQAIWQVRIEASR 897
Query: 897 ALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTL 956
ALL LEFH GID+ALSLFIK VEEEPS+RGQVKLG+HAMR+CQIKGGS+S++++ + TL
Sbjct: 898 ALLGLEFHFKGIDAALSLFIKYVEEEPSIRGQVKLGVHAMRLCQIKGGSESDNDIKSSTL 957
Query: 957 VALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLLLGDGE-TSEQKNVF 1015
VALL LLESRIAFNNVFLRHHLF IL+ILAGR PTLYGVPRD++ + E SEQKN F
Sbjct: 958 VALLRLLESRIAFNNVFLRHHLFCILRILAGRLPTLYGVPRDQIPQMDPAEICSEQKNGF 1017
Query: 1016 ASFVTEMRRAEPPMDVPNLSQDNLAVRDASKEVDCVANGHAENILAV 1062
+ V E + EPP+D PN+S D LA+ +AS+E D V+N H + V
Sbjct: 1018 ITIVKETKSLEPPVDTPNVSHDGLALPEASREADTVSNSHERKMPVV 1064
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132980|ref|XP_002321457.1| predicted protein [Populus trichocarpa] gi|222868453|gb|EEF05584.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225455844|ref|XP_002273351.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356513902|ref|XP_003525647.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356563105|ref|XP_003549806.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356563107|ref|XP_003549807.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449439379|ref|XP_004137463.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449516818|ref|XP_004165443.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297842145|ref|XP_002888954.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297334795|gb|EFH65213.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|22330618|ref|NP_177536.2| TBP-associated factor 2 [Arabidopsis thaliana] gi|20856938|gb|AAM26691.1| At1g73960/F2P9_17 [Arabidopsis thaliana] gi|332197409|gb|AEE35530.1| TBP-associated factor 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1154 | ||||||
| TAIR|locus:2031571 | 1390 | TAF2 "TBP-associated factor 2" | 0.888 | 0.737 | 0.665 | 0.0 | |
| DICTYBASE|DDB_G0292724 | 2044 | taf2 "TFIID subunit" [Dictyost | 0.244 | 0.137 | 0.353 | 1.2e-97 | |
| ZFIN|ZDB-GENE-030131-3207 | 1191 | taf2 "TAF2 RNA polymerase II, | 0.312 | 0.303 | 0.299 | 2.2e-72 | |
| UNIPROTKB|F6UTN8 | 1206 | TAF2 "Uncharacterized protein" | 0.312 | 0.299 | 0.283 | 6.4e-70 | |
| UNIPROTKB|E2QT19 | 1202 | TAF2 "Uncharacterized protein" | 0.311 | 0.298 | 0.284 | 8.3e-70 | |
| UNIPROTKB|Q6P1X5 | 1199 | TAF2 "Transcription initiation | 0.312 | 0.301 | 0.281 | 1.7e-69 | |
| MGI|MGI:2443028 | 1104 | Taf2 "TAF2 RNA polymerase II, | 0.310 | 0.324 | 0.283 | 4.8e-69 | |
| UNIPROTKB|Q5ZIT8 | 1168 | TAF2 "Transcription initiation | 0.312 | 0.309 | 0.283 | 5e-69 | |
| UNIPROTKB|F1MME0 | 1202 | TAF2 "Uncharacterized protein" | 0.312 | 0.300 | 0.283 | 2.4e-68 | |
| UNIPROTKB|F1LNY6 | 1200 | Taf2 "Protein Taf2" [Rattus no | 0.310 | 0.298 | 0.280 | 3.5e-68 |
| TAIR|locus:2031571 TAF2 "TBP-associated factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3580 (1265.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 689/1035 (66%), Positives = 806/1035 (77%)
Query: 1 MAKPRKPKNEET---KV-ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLH 56
MAK RKPKNEE K EN+GA V HQKL LSID +K QIYGYTELE++VPDIGIVGLH
Sbjct: 1 MAKARKPKNEEAPGAKTSENTGAKVLHQKLFLSIDFKKRQIYGYTELEVSVPDIGIVGLH 60
Query: 57 AENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRXXXXXXXXXXXXXXXXXXXXLEREL 116
AENLGIESVLVDGEPT FEYYPH HQN E E W L+RE
Sbjct: 61 AENLGIESVLVDGEPTVFEYYPH-HQNSETESNWNSVSDPASAADAAAMEYVGV-LKRED 118
Query: 117 VPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNA 176
NLLINCCKP K L++Q++ + LEN SS E KQNVKL+RI+YWVEK+E GIHFDGN
Sbjct: 119 TANLLINCCKPSKDLSEQLDSVTLENGSQSSGEAKQNVKLIRINYWVEKIESGIHFDGNI 178
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
+HTDNQ+RRARCWFPCIDD RC +DLEFTV N +AVS G LLYQV+ K+D +KTYV
Sbjct: 179 VHTDNQMRRARCWFPCIDDEYHRCSFDLEFTVPHNFVAVSVGKLLYQVMCKEDTTQKTYV 238
Query: 237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
Y L +P++ +W++L P E+LPD L+S++CLP ++S++ NT+EFFH A+S+YE YL
Sbjct: 239 YELAIPIAPRWVSLVAGPLEILPDQTNFLISNLCLPHDLSRLRNTMEFFHEAYSYYEDYL 298
Query: 297 DAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQ 356
A FPFG YKQVFL PEM V+SST GA++ IFSS ILYDE+VIDQ IDT IKL+ ALA+Q
Sbjct: 299 SANFPFGFYKQVFLPPEMVVTSSTSGASLSIFSSHILYDERVIDQTIDTRIKLASALAKQ 358
Query: 357 WFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATAL 416
WFGVYITPE PND+WLLDGLAGFLTD FIK+FLGNNEARYRRYKANCAVCKADDSGA L
Sbjct: 359 WFGVYITPESPNDDWLLDGLAGFLTDMFIKQFLGNNEARYRRYKANCAVCKADDSGAMCL 418
Query: 417 SSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS-PV 475
SSS SC+DL+GT IG+ GKIRS KS A+LQMLEKQMGS+ FRKILQ IISRA+ S +
Sbjct: 419 SSSPSCRDLFGTHSIGMHGKIRSWKSGAVLQMLEKQMGSDSFRKILQKIISRAKDPSNSI 478
Query: 476 RTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDC 535
R+LSTKEFR FANK+GNLERPFLKEFF RWV + GCPVLR+G SYNKRKN VE+A LR+C
Sbjct: 479 RSLSTKEFRQFANKIGNLERPFLKEFFQRWVASYGCPVLRIGLSYNKRKNNVEMAALREC 538
Query: 536 TVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQC 595
T D+R V+ + +DSE+RD D GWPG+MSIRV+ELDGM DHP LPMAGD WQLLE+ C
Sbjct: 539 TAALDARLSVIGATSDSESRDVDAGWPGIMSIRVYELDGMSDHPKLPMAGDRWQLLELPC 598
Query: 596 HSXXXXXXXXXXXXGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQ 655
HS G KPDG +DN DA+A L+ ++S+ESPL+WI+ADPEMEY+AEIH +Q
Sbjct: 599 HSKLAAKRYQKPKKGGKPDGAEDNVDAIAPLENKTSIESPLAWIKADPEMEYIAEIHLHQ 658
Query: 656 PVQMWINQLEKDGDVVXXXXXXXXXXXXPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYAL 715
P+QMW+NQLEKDGDVV SF++VN L N L+DSK FWR+RI AA+AL
Sbjct: 659 PLQMWVNQLEKDGDVVAQAQAIASLEALKQHSFSIVNALKNVLTDSKVFWRIRIAAAFAL 718
Query: 716 ANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD 775
A TASEE+DWAGL HL+KFYKSRRFD IGLP+PNDFRDF EYFVLEAIPHA+A+VR A+
Sbjct: 719 AKTASEESDWAGLQHLIKFYKSRRFDAEIGLPKPNDFRDFPEYFVLEAIPHAIAIVRGAE 778
Query: 776 NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDR 835
KSPREAVEF+LQLLKYNDN+GN YSDVFWLA LVQSVG+LEF QQS+ FL+ LLKRIDR
Sbjct: 779 GKSPREAVEFILQLLKYNDNSGNSYSDVFWLAVLVQSVGDLEFCQQSLTFLAPLLKRIDR 838
Query: 836 LLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEAS 895
LLQFDRLMPSYNGILTISCIRTL Q ALKLS IS D + KLI+PFR+ +TI Q+R+E S
Sbjct: 839 LLQFDRLMPSYNGILTISCIRTLAQTALKLSDSISFDHICKLIEPFRNSDTILQIRIEGS 898
Query: 896 RALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVT 955
RALLD+E+ GI SAL LF+K + EE SLRGQVKL +H MR+CQI G DS+ VDTVT
Sbjct: 899 RALLDIEYQSKGISSALLLFMKYLVEESSLRGQVKLCVHTMRLCQIAVGCDSDDCVDTVT 958
Query: 956 LVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLLLGDGETS-EQKNV 1014
L+ LL+L +S + FNN LR++LF I QILAGR PTL+GVP++K L L D E E KNV
Sbjct: 959 LLDLLHLFKSHVVFNNELLRYYLFCIFQILAGRPPTLFGVPKEKPLQLVDVEACIEPKNV 1018
Query: 1015 FASFVTEMRRAEPPM 1029
F V EP +
Sbjct: 1019 F--LVPGAEAGEPSL 1031
|
|
| DICTYBASE|DDB_G0292724 taf2 "TFIID subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-3207 taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6UTN8 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QT19 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6P1X5 TAF2 "Transcription initiation factor TFIID subunit 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2443028 Taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ZIT8 TAF2 "Transcription initiation factor TFIID subunit 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MME0 TAF2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LNY6 Taf2 "Protein Taf2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.11 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1154 | |||
| cd09839 | 507 | cd09839, M1_TAF2, TATA binding protein (TBP) assoc | 0.0 | |
| cd09595 | 407 | cd09595, M1, Peptidase M1 family contains aminopep | 1e-22 | |
| cd09603 | 415 | cd09603, M1_APN_4, Peptidase M1 family Aminopeptid | 1e-21 | |
| COG0308 | 859 | COG0308, PepN, Aminopeptidase N [Amino acid transp | 2e-13 | |
| cd09602 | 438 | cd09602, M1_APN_3, Peptidase M1 family containing | 6e-10 | |
| pfam01433 | 390 | pfam01433, Peptidase_M1, Peptidase family M1 | 2e-07 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 3e-04 | |
| TIGR02412 | 831 | TIGR02412, pepN_strep_liv, aminopeptidase N, Strep | 4e-04 | |
| cd09604 | 435 | cd09604, M1_APN_5, Peptidase M1 family containing | 4e-04 | |
| cd09599 | 442 | cd09599, M1_LTA4H, Peptidase M1 family contains le | 0.004 |
| >gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2 | Back alignment and domain information |
|---|
Score = 578 bits (1493), Expect = 0.0
Identities = 199/533 (37%), Positives = 286/533 (53%), Gaps = 54/533 (10%)
Query: 20 VVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
V HQK+ +SID + I GYTEL I ++ + L+A+ I SV V+GEP +F Y
Sbjct: 1 KVLHQKVEISIDFFRRSIIGYTELTILPLSKNLRQIRLNAKQCRILSVEVNGEPAKFTYN 60
Query: 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQ 137
Q + ++ W+S++ A+DA+ + LLI+ K +
Sbjct: 61 DP-TQELCRDEPWKSVLQH---ASDASLSAVSYVDLDANNGELLISVPKEVR-------- 108
Query: 138 MNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG--------NALHTDNQI-RRARC 188
+Q V VRID+ VE+ + G+HF G + T N I ARC
Sbjct: 109 ---------KLVDEQKVLRVRIDFSVEQPKGGLHFVGPDPEAERYPHVFTYNSIHGSARC 159
Query: 189 WFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248
WFPC+DD +Q C ++LEFTV N++AVS+G LL QV +D +KTY Y L VP +A+ I
Sbjct: 160 WFPCVDDPSQLCTWELEFTVPANMVAVSSGDLLEQVYDTEDMRKKTYHYALTVPTAAQNI 219
Query: 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV 308
LAV PFE+L D H ++H CLP + ++ NT + H AF +E YL +FPF SYKQV
Sbjct: 220 GLAVGPFEILVDPHAHEITHFCLPGLLPELKNTTSYLHEAFEFFEEYLSCRFPFSSYKQV 279
Query: 309 FLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPN 368
F+ E A +++ A++ IFSS +LY E +IDQ DT KL++ALA QWFG +I+PE +
Sbjct: 280 FV-DEAAEDVTSY-ASLSIFSSNLLYPEDIIDQTYDTRRKLAYALASQWFGCFISPEAWS 337
Query: 369 DEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKD---- 424
DEWLL G+AG++T F+KK GNNE R+R K VC+ D L
Sbjct: 338 DEWLLKGIAGYITGLFVKKLFGNNEYRFRIKKELDRVCEYDIKRPGILLDPIILPGKLPL 397
Query: 425 ----LYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS------- 473
+ C ++G+ + K+ +L+MLE+++G F ++L I+SRA AS
Sbjct: 398 NPDPKHPHTCSPLYGEFMALKAHLVLRMLERRIGKESFLQVLNKILSRALQASQQKTQSG 457
Query: 474 --PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRK 524
LST+ F KV LK FF +WV GCP R+ F +N+++
Sbjct: 458 DWSQMLLSTESFFKTCEKV---SGKELKVFFQQWVYGSGCPKFRVSFRFNRKR 507
|
This family includes TATA binding protein (TBP) associated factor 2 (TAF2, TBP-associated factor TAFII150, transcription initiation factor TFIID subunit 2, RNA polymerase II TBP-associated factor subunit B), and has homology to the aminopeptidase N (APN) subfamily, belonging to the M1 gluzincin family. TAF2 is part of the TFIID multidomain subunit complex essential for transcription of most protein-encoded genes by RNA polymerase II. TAF2 is known to interact with the initiator element (Inr) found at the transcription start site of many genes, thus possibly playing a key role in promoter binding as well as start-site selection. Image analysis has shown TAF2 to form a complex with TAF1 and TBP, inferring its role in promoter recognition. Peptidases in the M1 family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. TAF2, however, does not seem to contain any of the active site residues. Length = 507 |
| >gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and leukotriene A4 hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N | Back alignment and domain information |
|---|
| >gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|189009 cd09602, M1_APN_3, Peptidase M1 family containing Aminopeptidase N | Back alignment and domain information |
|---|
| >gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1 | Back alignment and domain information |
|---|
| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
| >gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans type | Back alignment and domain information |
|---|
| >gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial Aminopeptidase N | Back alignment and domain information |
|---|
| >gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4 hydrolase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1154 | |||
| KOG1932 | 1180 | consensus TATA binding protein associated factor [ | 100.0 | |
| PRK14015 | 875 | pepN aminopeptidase N; Provisional | 100.0 | |
| TIGR02414 | 863 | pepN_proteo aminopeptidase N, Escherichia coli typ | 100.0 | |
| KOG1046 | 882 | consensus Puromycin-sensitive aminopeptidase and r | 100.0 | |
| TIGR02412 | 831 | pepN_strep_liv aminopeptidase N, Streptomyces livi | 100.0 | |
| TIGR02411 | 601 | leuko_A4_hydro leukotriene A-4 hydrolase/aminopept | 100.0 | |
| COG0308 | 859 | PepN Aminopeptidase N [Amino acid transport and me | 100.0 | |
| PF01433 | 390 | Peptidase_M1: Peptidase family M1 This is family M | 100.0 | |
| KOG1047 | 613 | consensus Bifunctional leukotriene A4 hydrolase/am | 100.0 | |
| PF13485 | 128 | Peptidase_MA_2: Peptidase MA superfamily | 98.7 | |
| COG3975 | 558 | Predicted protease with the C-terminal PDZ domain | 98.57 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.55 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.23 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 95.88 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 95.57 | |
| KOG1932 | 1180 | consensus TATA binding protein associated factor [ | 94.76 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 94.75 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.41 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 93.9 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 93.85 | |
| PF05299 | 122 | Peptidase_M61: M61 glycyl aminopeptidase; InterPro | 92.43 | |
| PF10460 | 366 | Peptidase_M30: Peptidase M30; InterPro: IPR019501 | 92.25 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 91.02 | |
| PF07607 | 128 | DUF1570: Protein of unknown function (DUF1570); In | 90.9 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 90.12 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 90.06 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 89.41 | |
| PF04450 | 205 | BSP: Peptidase of plants and bacteria; InterPro: I | 87.38 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 85.11 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 84.75 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 82.18 |
| >KOG1932 consensus TATA binding protein associated factor [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-165 Score=1476.60 Aligned_cols=942 Identities=36% Similarity=0.583 Sum_probs=786.5
Q ss_pred CCCCCCCCCCC----CCCCCCCeEEEEEEEEEE-EECCCcEEEEEEEEEEEe--CCccEEEEEcCCceeEEEEEcCeeee
Q 001111 1 MAKPRKPKNEE----TKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (1154)
Q Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~L~I~~V~Vng~~~~ 73 (1154)
|++.|++++.. ...++++..++||+|+|+ |||+++++.|.|||+|.+ ++++.|.|||++|+|.+|.|||.++.
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 56677776633 457777788999999998 999999999999999984 68999999999999999999999999
Q ss_pred eEecCCCCccchhhhhhcccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeeccccccc
Q 001111 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (1154)
Q Consensus 74 f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~ 153 (1154)
|.|+|+ ++....+..|.... .+...++.....|... .++.|+|.|.++++.... +.+ ..
T Consensus 83 f~y~d~-~q~~~~~~~~~~~l-~~~s~~~~~~~~y~~l--~~~~g~L~I~ipk~~~~~--~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDP-TQNDCTDEIWQRVL-DPASQSHFLAVQYEDL--DEDNGELLIKIPKESKKV--GEE---------------LK 141 (1180)
T ss_pred eeecch-hhhhhhhhhhhhhh-hhhhhhhhHHHhhhcc--ccCCCeEEEEcCchhhhh--hhh---------------cc
Confidence 999987 45443344443211 1111122222233222 224689999876542211 111 01
Q ss_pred ceeEEEEEEEecccccceeccc---------eEEeccccC--CCCEEEeeCCCCCCceEEEEEEEEcCCcEEEecCceee
Q 001111 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQIR--RARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (1154)
Q Consensus 154 ~~~v~i~y~~~~p~~G~~F~~~---------~~~Tq~ep~--~AR~wFPC~DeP~~Katf~L~ItvP~~~~avSNG~L~~ 222 (1154)
...++|+|.+++|..|++|+++ +++|.+.+. +||+||||+|+++++|||+|++++|++++++++|+|.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2347799999999999999754 466666543 68999999999999999999999999999999999999
Q ss_pred eeeecCCCCcEEEEEEeccccchhhhhhhccCeEEEecCCCCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001111 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (1154)
Q Consensus 223 ~~~~~~d~~~kt~~F~~t~P~sayliafaVG~F~~~~~~~~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf 302 (1154)
++.++ |.+++|++|+.+.|+++.+||||||+|+.+.++.+.++++||+|+..+.+++++-++.++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 98876 88999999999999999999999999999988889999999999999999999999999999999999988999
Q ss_pred CCccEEEeCCCccccccccCceeeeeccccccCcccchhhhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHH
Q 001111 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (1154)
Q Consensus 303 ~ky~~VfVp~~~~~~~~~~gagLii~s~~LL~~~~~~d~~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~ 382 (1154)
+.|++||||+.+. .....++|.|+++++||+.++||+.+.+++.+|.+||.||||++|||..|+|.||.+|+|+|+..
T Consensus 301 ~~~k~VFvd~~~~--~i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAV--EISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCcc--eeeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 9999999996432 23455689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHhhhhhhccc-CCCccccCCCccccCCCCccccccccceeccHHHHHHHHHHHh----chHH
Q 001111 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (1154)
Q Consensus 383 l~~~~~~G~ne~r~~~~~~~~~~~~~d~-~~~~~L~s~~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~l----G~e~ 457 (1154)
+|+++++|+|||||+.++..++++..|. .++..+.. |++++ ..| -.|+++.+|.+.+++ |.-.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s---~k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPS---MKF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcc---hhh----cccCcceeeecccceeecChhHH
Confidence 9999999999999999999999998887 34443331 11111 001 345666666665554 2334
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeecc
Q 001111 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (1154)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~tlst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~ 536 (1154)
....+++.+...+.++ .+...+.+.|+++++.++.. .++.||++|+++.|+|.+.+.+.||++++.|++.+.|.++
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~---~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM---LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh---HHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 4555555555555554 22234556666666665531 2589999999999999999999999999999999999665
Q ss_pred CCCCCCCCccC------CCCCCCCC----CCCCCcceeEEEEEEecCCccccccccCCCCceEEEeeeccchhhHhhhcC
Q 001111 537 VKPDSRTPVLS------SNTDSENR----DGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (1154)
Q Consensus 537 ~~~~~~~~~~~------~~~~~~~~----~~~~~~~gpmtvri~E~DGt~eh~v~~~~~~~~~~~ei~~~sK~~~rR~~k 606 (1154)
....+..++.+ ...+.+++ .+...|+|||||||||+||||+|++ +| ++.|++.||||||| +|++|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence 54433222111 01111111 1224599999999999999999986 45 45699999999999 45578
Q ss_pred CCCCCCCCCCCCCCCcccccccccCCCCCceEEEEcCCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHhCCCC
Q 001111 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (1154)
Q Consensus 607 ~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~~~~~ 686 (1154)
+||.++.+|||+++| +++||. ++|++|||+||||||||+|+++||+|||++||++||||+||+|||++|++.|++
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d~----~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMDE----ESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccCc----cCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 899999999999988 878773 899999999999999999999999999999999999999999999999999865
Q ss_pred chhHHHHHHHHhccCCchHHHHHHHHHHHHcccccccchhhHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 001111 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 766 (1154)
Q Consensus 687 s~~~~~~L~~~l~d~~~F~~VR~~Aa~aLa~~a~~~~~~~g~~~L~~~f~~~~~~~~~~ipk~NdFsd~~~Yfvqkaip~ 766 (1154)
..++||+|||.|+|||||||++||+||+++++++.+|.|++||+++|++.||+.+++|||||||+|||+|||||+||.
T Consensus 674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCChHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHhhccccccccHH-------------HHHHHHHHH
Q 001111 767 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSIL-------------FLSSLLKRI 833 (1154)
Q Consensus 767 ala~vr~~~g~~p~~v~~fLldll~~NDNs~N~ysD~~y~a~li~aL~~~~~~~~~~~-------------~~~~~~~ei 833 (1154)
|||.+|+.+|+||.+|++||||||||||||+|+|||+||+|+||+||++..++..+.. +...++.||
T Consensus 752 a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei 831 (1180)
T KOG1932|consen 752 AFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEI 831 (1180)
T ss_pred HHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877644322 234599999
Q ss_pred HHHhhcccccCCCCcHhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccCCCCcHHHHHHHHHHhhccccccCCchHHHH
Q 001111 834 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALS 913 (1154)
Q Consensus 834 ~r~~~~D~~~pSy~~vvt~~~l~~l~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~vR~~A~~~l~~~~~~~~~~~~~l~ 913 (1154)
+|+|+||+++|||.++|+++||+++.+++ ..|++|.++ ..+..|++++.+.++|++|++++++++.. +|..++|.
T Consensus 832 ~r~L~~e~l~pS~k~ii~~~~l~~~~~l~--k~~hl~s~p--~~~~~~a~~~~~vd~r~~a~~~~v~~~~~-~~~~~~l~ 906 (1180)
T KOG1932|consen 832 TRLLNMEKLMPSFKHIIKVSALKAIRELQ--KSGHLPSLP--ELLESYAEEGSFVDVRICAEELNVDLGGV-DGSPDDLA 906 (1180)
T ss_pred HHHHHHHhhchhhhceEEeeechhhhhhh--hccccccCc--hhhhccccccchhhhHHHhhhhhhhhccc-CCChHHHH
Confidence 99999999999999999999999999985 589999988 45789999999999999999999999764 55568999
Q ss_pred HHHHHhccCccchhhhhHHHHHhh-hhhhccCCCCCCCCChHHHHHHHHHHhccccccchhhHhhHHHHHHHhhcCCccc
Q 001111 914 LFIKSVEEEPSLRGQVKLGIHAMR-ICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTL 992 (1154)
Q Consensus 914 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~~~~~~l 992 (1154)
++++.++.||++..|+++...+.. ..++.+++ +.+.++.+.+++++|.+++.+...|..+||.+.+. |++|
T Consensus 907 ~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~-~~s~~~~~~~~~~~~~~~~~~k~~D~~~r~~v~d~-------~~~L 978 (1180)
T KOG1932|consen 907 YILEILENDPDPVIRHKILDMLSQSNNPVTKGG-TESDLLKEALVERLWKLKNLSKEPDICSRSSVLDV-------YIAL 978 (1180)
T ss_pred HHhhhcccCcchHHHHHHHHHhhccCCceeecc-ccCccccHHHHHhhhhhhccCCCCCeEeEeehhhh-------hhhe
Confidence 999999999888888876666655 66776665 56799999999999999999989999999998888 9999
Q ss_pred cCCCCCcccccCCC
Q 001111 993 YGVPRDKLLLLGDG 1006 (1154)
Q Consensus 993 ~g~~~~~~~~~~~~ 1006 (1154)
||..++.++..+..
T Consensus 979 ~~~~~~~~~~a~E~ 992 (1180)
T KOG1932|consen 979 FGLGRPNILGAPEI 992 (1180)
T ss_pred eecCCcccccchhh
Confidence 99999988877765
|
|
| >PRK14015 pepN aminopeptidase N; Provisional | Back alignment and domain information |
|---|
| >TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type | Back alignment and domain information |
|---|
| >KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type | Back alignment and domain information |
|---|
| >TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase | Back alignment and domain information |
|---|
| >COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification | Back alignment and domain information |
|---|
| >KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF13485 Peptidase_MA_2: Peptidase MA superfamily | Back alignment and domain information |
|---|
| >COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG1932 consensus TATA binding protein associated factor [Transcription] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] | Back alignment and domain information |
|---|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1154 | ||||
| 3cia_A | 605 | Crystal Structure Of Cold-Aminopeptidase From Colwe | 9e-07 | ||
| 4e36_A | 967 | Crystal Structure Of The Human Endoplasmic Reticulu | 9e-06 | ||
| 3se6_A | 967 | Crystal Structure Of The Human Endoplasmic Reticulu | 1e-05 | ||
| 3mdj_A | 921 | Er Aminopeptidase, Erap1, Bound To The Zinc Aminope | 1e-05 | ||
| 3q7j_A | 780 | Engineered Thermoplasma Acidophilum F3 Factor Mimic | 5e-05 | ||
| 2yd0_A | 897 | Crystal Structure Of The Soluble Domain Of Human En | 5e-05 | ||
| 3qnf_A | 954 | Crystal Structure Of The Open State Of Human Endopl | 7e-05 | ||
| 4fyq_A | 903 | Human Aminopeptidase N (Cd13) Length = 903 | 7e-05 | ||
| 1z1w_A | 780 | Crystal Structures Of The Tricorn Interacting Facor | 1e-04 | ||
| 4fke_A | 909 | Crystal Structure Of Porcine Aminopeptidase-N Lengt | 3e-04 | ||
| 4f5c_A | 959 | Crystal Structure Of The Spike Receptor Binding Dom | 3e-04 | ||
| 4h5h_A | 908 | Crystal Structure Of Porcine Aminopeptidase-N Compl | 3e-04 | ||
| 4hol_A | 908 | Crystal Structure Of Porcine Aminopeptidase-N Compl | 3e-04 |
| >pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia Psychrerythraea Length = 605 | Back alignment and structure |
|
| >pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Variant N392k Length = 967 | Back alignment and structure |
| >pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Length = 967 | Back alignment and structure |
| >pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase Inhibitor, Bestatin Length = 921 | Back alignment and structure |
| >pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development Length = 780 | Back alignment and structure |
| >pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 897 | Back alignment and structure |
| >pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 954 | Back alignment and structure |
| >pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13) Length = 903 | Back alignment and structure |
| >pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations Length = 780 | Back alignment and structure |
| >pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Length = 909 | Back alignment and structure |
| >pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of A Porcine Respiratory Coronavirus In Complex With The Pig Aminopeptidase N Ectodomain Length = 959 | Back alignment and structure |
| >pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Cleaved Poly-Alanine Length = 908 | Back alignment and structure |
| >pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Poly- Alanine Length = 908 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 2e-21
Identities = 63/419 (15%), Positives = 132/419 (31%), Gaps = 38/419 (9%)
Query: 143 KLDSSAEPKQNVKLVRIDYWVEKVEVGIHF------DGNA---LHTDNQIRRARCWFPCI 193
L + Q + + I + + + G L + Q R PC
Sbjct: 95 SLPIALSKNQEIV-IEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQ 153
Query: 194 DDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253
D + + Y E +V + L+A+ + + +DP RK Y + VP+ I L V
Sbjct: 154 DTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVG 213
Query: 254 PFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE 313
E ++ V K + E L + +G Y + L P
Sbjct: 214 ALESRQIGPRT--LVWSEKEQVEKSAYEFSETESMLKIAE-DLGGPYVWGQYDLLVLPPS 270
Query: 314 MAVSSSTFGAAMG----IF--SSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELP 367
+G M F + + D+ + + ++ W G +T +
Sbjct: 271 FP-----YG-GMENPCLTFVTPTLLAGDKSL----SNVIAHQ---ISHSWTGNLVTNKTW 317
Query: 368 NDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYG 427
+ WL +G +L + G + + + + + DL
Sbjct: 318 DHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTD 377
Query: 428 TQCIGIFGKIRSCKSVAILQMLEKQM-GSNFFRKILQNIISRAQGASPVRTLSTKEFR-H 485
+ + K A+L LE+ + G F L+ + + S ++T +++
Sbjct: 378 IDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDF 433
Query: 486 FANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTP 544
+ + + + W+ + G P ++ + + L+ + D +
Sbjct: 434 LYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSF 492
|
| >3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 | Back alignment and structure |
|---|
| >2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 | Back alignment and structure |
|---|
| >3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Length = 891 | Back alignment and structure |
|---|
| >2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Length = 867 | Back alignment and structure |
|---|
| >3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Length = 889 | Back alignment and structure |
|---|
| >3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967 | Back alignment and structure |
|---|
| >1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780 | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1154 | |||
| 3b34_A | 891 | Aminopeptidase N; protease, hydrolase, thermolysin | 100.0 | |
| 3ebh_A | 889 | PFA-M1, M1 family aminopeptidase; hydrolase, metal | 100.0 | |
| 3se6_A | 967 | Endoplasmic reticulum aminopeptidase 2; thermolysi | 100.0 | |
| 2xdt_A | 897 | Endoplasmic reticulum aminopeptidase 1; glycoprote | 100.0 | |
| 2gtq_A | 867 | Aminopeptidase N; alanine aminopeptidase, M1 famil | 100.0 | |
| 4fke_A | 909 | Aminopeptidase N; zinc aminopeptidase, hydrolase; | 100.0 | |
| 1z5h_A | 780 | Tricorn protease interacting factor F3; zinc amino | 100.0 | |
| 3u9w_A | 608 | Leukotriene A-4 hydrolase; hydrolase-hydrolase inh | 100.0 | |
| 3cia_A | 605 | Cold-active aminopeptidase; psychrohilic, hydrolas | 100.0 | |
| 2xq0_A | 632 | LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B | 100.0 | |
| 4fgm_A | 597 | Aminopeptidase N family protein; structural genomi | 99.87 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 96.94 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 96.24 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 95.86 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 95.47 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 95.2 | |
| 3rjo_A | 419 | Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd | 94.95 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 94.75 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 94.72 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 94.59 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 93.45 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 92.78 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 91.91 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 91.36 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 91.0 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 90.36 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 89.41 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 89.08 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 88.83 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 85.86 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 84.76 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 84.3 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 84.08 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 82.43 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 81.95 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 81.33 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 81.17 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 80.74 |
| >3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-71 Score=706.64 Aligned_cols=546 Identities=16% Similarity=0.189 Sum_probs=414.2
Q ss_pred CCCCCCeEEEEEEEEEEEECCCcEEEEEEEEEEEeCCccEEEEEcCCceeEEEEEcCeee-eeEecCCCCccchhhhhhc
Q 001111 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPT-EFEYYPHNHQNVENEKRWR 91 (1154)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~L~I~~V~Vng~~~-~f~~~~~~~~~~~~~~~~~ 91 (1154)
....+++.+.||+|++++|+++.++.|+++|++...+++.|.||+++|+|.+|++||.++ .|+..+
T Consensus 33 ~y~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~l~Ld~~~L~I~sV~v~G~~l~~y~~~~------------- 99 (891)
T 3b34_A 33 DYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEE------------- 99 (891)
T ss_dssp GCCCCSEEEEEEEEEEECCSSCEEEEEEEEEEECSCTTCCEEEECSSCEEEEEEETTEECCSEEEET-------------
T ss_pred hCCCCCceeEEEEEEEEEECCceEEEEEEEEEEccCCCCEEEEECCCCEEEEEEEcCEEcceEEeeC-------------
Confidence 355678999999999999999999999999987544567899999999999999999887 555432
Q ss_pred ccccCCChhhhHHHHHHHHhhhccCcCcEEEEcCCCCCCccccccceeeeEEEeecccccccceeEEEEEEEecccccce
Q 001111 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIH 171 (1154)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~l~~~~~~eL~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~v~i~y~~~~p~~G~~ 171 (1154)
..|+|. + ++ +.++++ +.|.+.+..+ ....|++
T Consensus 100 --------------------------~~L~I~---~---lp---~~~~l~--I~y~~~p~~~-----------~~l~Gly 131 (891)
T 3b34_A 100 --------------------------GALVIS---N---LP---ERFTLK--IINEISPAAN-----------TALEGLY 131 (891)
T ss_dssp --------------------------TEEEEC---S---CC---SEEEEE--EEEEECGGGC-----------CSCCEEE
T ss_pred --------------------------CEEEEE---e---CC---CeEEEE--EEEEEeeccc-----------CCCceEE
Confidence 136663 1 11 123333 4444443211 0113444
Q ss_pred eccceEEeccccCCCCEEEeeCCCCCCceEEEEEEEEcCC-c-EEEecCceeeeeeecCCCCcEEEEEEeccccchhhhh
Q 001111 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (1154)
Q Consensus 172 F~~~~~~Tq~ep~~AR~wFPC~DeP~~Katf~L~ItvP~~-~-~avSNG~L~~~~~~~~d~~~kt~~F~~t~P~saylia 249 (1154)
+.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++|
T Consensus 132 ~s~~~~~Tq~Ep~~AR~~fPc~DeP~~kAtf~itI~~p~~~y~~alSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~A 209 (891)
T 3b34_A 132 QSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGE--LENGRHWVQWQDPFPKPCYLFA 209 (891)
T ss_dssp EETTEEEEECTTTTGGGTSSBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--CSTTEEEEEEEEEEEECGGGCC
T ss_pred EeCCEEEeccccCCCCccccCCCCcccceEEEEEEEeccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccceeeE
Confidence 4445789999999999999999999999999999999997 6 8999999987653 3568899999999999999999
Q ss_pred hhccCeEEEecC----CC--CceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCccccccccCc
Q 001111 250 LAVAPFEVLPDH----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (1154)
Q Consensus 250 faVG~F~~~~~~----~~--~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~~~~~~~~ga 323 (1154)
|+||+|+.+++. .+ .++++|++|+..+.++++++.++++++|||++||++|||++|++|++|+...++|+++
T Consensus 210 ~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~GaMEn~-- 287 (891)
T 3b34_A 210 LVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENK-- 287 (891)
T ss_dssp EEEECCEEEEEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEECCT--
T ss_pred EEeccceEEeeeeeccCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcCccccC--
Confidence 999999998752 22 5799999999999999999999999999999999999999999999997656678877
Q ss_pred eeeee-ccccccCcccc-hhhh-hhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHH
Q 001111 324 AMGIF-SSQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (1154)
Q Consensus 324 gLii~-s~~LL~~~~~~-d~~~-~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~ 400 (1154)
|+++| +..+|+++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.+|++...|....++....
T Consensus 288 GLitf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~~~~~~~ 367 (891)
T 3b34_A 288 GLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVR 367 (891)
T ss_dssp TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 67888 45678876543 2222 234689999999999999999999999999999999999999988775544332221
Q ss_pred HhhhhhhcccCCCccccCCCccccCCC---CccccccccceeccHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCCCCCC
Q 001111 401 ANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (1154)
Q Consensus 401 ~~~~~~~~d~~~~~~L~s~~s~~~l~~---~~~~~~f~~i~Y~Kg~lVL~MLe~~lG~e~F~~~L~~yl~~~~~~~~~~t 477 (1154)
.........+.+ +..+++.. .++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 368 ~l~~~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~VLrML~~~lG~e~F~~gLr~Yl~~~~~~~---- 436 (891)
T 3b34_A 368 TMRGLQFAEDAS-------PMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSA---- 436 (891)
T ss_dssp HHHHTHHHHHTS-------TTCCCSSCSEESCGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE----
T ss_pred HHHHhhhhhhcc-------ccCCCCccccccccccccccchhhHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCCC----
Confidence 111100011111 11222221 2345678889999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhcCCCCccHHHHHHHhhcCCCCceEEEEEEEeccccEEEEEEEeeccCCCCCCCCccCCCCCCCCCCC
Q 001111 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (1154)
Q Consensus 478 lst~~F~~l~e~vs~~~g~dL~~Ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~Q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1154)
+++++|++.++++++ .|+++| ++|++++|+|.++|+..|+.+++.++++++|...... ....
T Consensus 437 att~Df~~ale~~sg---~dL~~f-~~W~~q~G~P~l~V~~~~~~~~~~~~ltl~Q~~~~~~--------------~~~~ 498 (891)
T 3b34_A 437 ATCDDFVQAMEDASN---VDLSHF-RRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATP--------------DQAE 498 (891)
T ss_dssp ECHHHHHHHHHHHHC---CCCTTT-THHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCBT--------------TBSC
T ss_pred CCHHHHHHHHHHHhC---CCHHHH-HHHHcCCCCceEEEEEEeecCCCEEEEEEEEecCCCC--------------CCCC
Confidence 799999999999884 688884 7999999999999999998777777788877542110 0012
Q ss_pred CCCcceeEEEEEEecCCccccccccCCCCc-eEEEeeeccchhhHhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCc
Q 001111 558 DIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPL 636 (1154)
Q Consensus 558 ~~~~~gpmtvri~E~DGt~eh~v~~~~~~~-~~~~ei~~~sK~~~rR~~k~kk~~~~~~~~~~~d~~~~~d~~~~~~~p~ 636 (1154)
...|++|+++.+.+.||.. +++ .+.++. ..++.+. +.+...+ +...+ +.|
T Consensus 499 ~~~~~iPi~v~l~~~~G~~-~~~-~~~~~~~~~~~~l~--------------------~~~~~~~-~~~v~-----~~P- 549 (891)
T 3b34_A 499 KQPLHIPFAIELYDNEGKV-IPL-QKGGHPVNSVLNVT--------------------QAEQTFV-FDNVY-----FQP- 549 (891)
T ss_dssp CCCCCEEEEEEEECTTSCB-CCC-EETTEECCSEEEEC--------------------SSEEEEE-ECCCC-----SCC-
T ss_pred CceEEEEEEEEEEcCCCCc-ccc-cccccccceEEEec--------------------CCcEEEE-EccCC-----CCC-
Confidence 3479999999999888863 111 011110 0011110 0000000 10011 223
Q ss_pred eEEEEcCCCcEEEEEecCCCHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 001111 637 SWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (1154)
Q Consensus 637 ~WIRiDpd~ewl~~v~~~qp~~m~~~QL~~drDV~aQ~eAi~~L~~ 682 (1154)
||++|+++....+|++++++++|+.||++|+|+.+|.||++.|.+
T Consensus 550 -~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a~~~L~~ 594 (891)
T 3b34_A 550 -VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLA 594 (891)
T ss_dssp -EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred -cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999985
|
| >3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* | Back alignment and structure |
|---|
| >3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A* | Back alignment and structure |
|---|
| >2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A* | Back alignment and structure |
|---|
| >1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* | Back alignment and structure |
|---|
| >3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ... | Back alignment and structure |
|---|
| >3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
| >2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* | Back alignment and structure |
|---|
| >4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1154 | ||||
| d3b7sa2 | 208 | b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-term | 1e-14 | |
| d3b7sa3 | 252 | d.92.1.13 (A:209-460) Leukotriene A4 hydrolase cat | 4e-13 |
| >d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 208 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Leukotriene A4 hydrolase N-terminal domain superfamily: Leukotriene A4 hydrolase N-terminal domain family: Leukotriene A4 hydrolase N-terminal domain domain: Leukotriene A4 hydrolase N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.8 bits (175), Expect = 1e-14
Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 65/247 (26%)
Query: 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEF 74
S +H L S+D + + G L + ++ + L ++L IE V+++G+ ++
Sbjct: 14 SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKY 73
Query: 75 EYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQ 134
Q+ + S+ +
Sbjct: 74 ALGE--RQSYKGSPMEISLPIAL------------------------------------- 94
Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHF---------DGNALHTDNQIRR 185
K ++ I + + + + L + Q
Sbjct: 95 ---------------SKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIH 139
Query: 186 ARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245
R PC D + + Y E +V + L+A+ + + +DP RK Y + VP+
Sbjct: 140 CRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 199
Query: 246 KWITLAV 252
I L V
Sbjct: 200 YLIALVV 206
|
| >d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1154 | |||
| d3b7sa3 | 252 | Leukotriene A4 hydrolase catalytic domain {Human ( | 100.0 | |
| d3b7sa2 | 208 | Leukotriene A4 hydrolase N-terminal domain {Human | 99.97 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 96.09 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 94.21 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 92.28 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 91.05 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 91.03 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 89.84 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 89.72 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 81.87 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 81.49 |
| >d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-39 Score=354.94 Aligned_cols=238 Identities=14% Similarity=0.236 Sum_probs=185.5
Q ss_pred CCceEEEeCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEeCCCc-cccccccCceeeeeccccccCcccchh
Q 001111 263 QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM-AVSSSTFGAAMGIFSSQILYDEKVIDQ 341 (1154)
Q Consensus 263 ~~~v~~y~~P~~~~~~~~t~~~~~~al~ffee~fG~~YPf~ky~~VfVp~~~-~~~~~~~gagLii~s~~LL~~~~~~d~ 341 (1154)
+..|++|++|+..+.++++++.+++++++||++|| ||||++|++|++|++. .++|+++ |++++++.++..+.
T Consensus 7 g~~vrv~~~p~~~~~~~~~l~~~~~~l~~~e~~~g-~YP~~k~d~v~~~~~~~~ggmE~~--~l~~~~~~~~~~~~---- 79 (252)
T d3b7sa3 7 GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLLAGDK---- 79 (252)
T ss_dssp ETTEEEEECGGGHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGCCSSS----
T ss_pred CCceEEEEccchHHHHHHHHHHHHHHHHHHHHhCC-CCCchhcCEEEeCCCccccccccc--eeeeecchhccccc----
Confidence 56899999999999999999999999999999998 9999999999996543 3345554 57777666554432
Q ss_pred hhhhHHHHHHHHHHhhcCCccccCCCCcchhhhhHHHhHHHHHHHHHhCChHHHHHHHHHhhhhhhccc--CCCccccCC
Q 001111 342 AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADD--SGATALSSS 419 (1154)
Q Consensus 342 ~~~~~~~IaHELAHQWFGnlVt~~~W~D~WLnEGfA~Yl~~l~~~~~~G~ne~r~~~~~~~~~~~~~d~--~~~~~L~s~ 419 (1154)
....++|||+|||||||+||++||+|+||+||||+|++.+++++.+|.+..++.............+ ....++...
T Consensus 80 --~~~~~iaHE~aHqWfG~~Vt~~~w~~~WL~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (252)
T d3b7sa3 80 --SLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKL 157 (252)
T ss_dssp --TTTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCGGGSS
T ss_pred --hHHHHHHHHHHHHHHhhhceeccccchHhhccHHHHHHHHhhccccchhhhhhhhhhhhhhHHHHHhhhhccCCccee
Confidence 1234799999999999999999999999999999999999999999998765543332222111111 111111111
Q ss_pred CccccCCCCccccccccceeccHHHHHHHHHHHhc-hHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCCccH
Q 001111 420 ASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFL 498 (1154)
Q Consensus 420 ~s~~~l~~~~~~~~f~~i~Y~Kg~lVL~MLe~~lG-~e~F~~~L~~yl~~~~~~~~~~tlst~~F~~l~e~vs~~~g~dL 498 (1154)
.......+....|+.++|.||++||+||++.|| ++.|+++|+.|++++++++ +++++|.+.+++++ +.++
T Consensus 158 --~~~~~~~~~~~~f~~~~Y~Kga~vl~mL~~~iG~~~~f~~~lr~yl~~~~~~~----~~~~df~~~l~~~~---~~~~ 228 (252)
T d3b7sa3 158 --VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSYF---KDKV 228 (252)
T ss_dssp --SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHHT---GGGH
T ss_pred --eccccccchhhcccceeecchhHHHHHHHHHhccHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHh---cccc
Confidence 011112223446888999999999999999999 5789999999999999985 79999999999987 4578
Q ss_pred HHH----HHHhhcCCCCceEEEEE
Q 001111 499 KEF----FPRWVGTCGCPVLRMGF 518 (1154)
Q Consensus 499 ~~F----f~qWv~~~G~P~l~V~~ 518 (1154)
+.+ |++|++++|+|+|+|++
T Consensus 229 ~~~~~~~f~~W~~~~G~P~l~v~~ 252 (252)
T d3b7sa3 229 DVLNQVDWNAWLYSPGLPPIKPNY 252 (252)
T ss_dssp HHHTTSCHHHHHHCCSSCSSCCCC
T ss_pred chhhHhHHHHHhcCCCCCeeeccC
Confidence 887 99999999999998863
|
| >d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|