Citrus Sinensis ID: 001132
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1147 | 2.2.26 [Sep-21-2011] | |||||||
| Q499Y0 | 1150 | Exportin-4 OS=Xenopus lae | N/A | no | 0.870 | 0.868 | 0.256 | 2e-84 | |
| Q9ESJ0 | 1151 | Exportin-4 OS=Mus musculu | yes | no | 0.897 | 0.894 | 0.252 | 3e-82 | |
| Q9C0E2 | 1151 | Exportin-4 OS=Homo sapien | yes | no | 0.897 | 0.894 | 0.255 | 1e-81 | |
| Q802D3 | 1150 | Exportin-4 OS=Danio rerio | yes | no | 0.898 | 0.896 | 0.248 | 2e-81 | |
| Q5ZMR9 | 1154 | Exportin-4 OS=Gallus gall | yes | no | 0.869 | 0.863 | 0.253 | 5e-80 | |
| Q54UP5 | 1133 | Exportin-4 OS=Dictyosteli | yes | no | 0.891 | 0.902 | 0.215 | 5e-44 | |
| Q704U0 | 1087 | Exportin-7-A OS=Xenopus l | N/A | no | 0.183 | 0.193 | 0.243 | 5e-06 | |
| Q569Z2 | 1087 | Exportin-7-B OS=Xenopus l | N/A | no | 0.183 | 0.193 | 0.243 | 5e-06 | |
| Q9UIA9 | 1087 | Exportin-7 OS=Homo sapien | no | no | 0.271 | 0.286 | 0.210 | 2e-05 | |
| Q5R9G4 | 1087 | Exportin-7 OS=Pongo abeli | no | no | 0.271 | 0.286 | 0.210 | 3e-05 |
| >sp|Q499Y0|XPO4_XENLA Exportin-4 OS=Xenopus laevis GN=xpo4 PE=2 SV=1 | Back alignment and function desciption |
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Score = 315 bits (806), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 309/1207 (25%), Positives = 542/1207 (44%), Gaps = 208/1207 (17%)
Query: 51 AEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110
AE L +S P+ C+ ILE S+V FQAA AI +A +REW L +SL F
Sbjct: 36 AEHVFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKSSIESLRTF 95
Query: 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQ 170
L +V+Q + + YV+ +I A ++KRG LD S D ++ F +V Q + + Q
Sbjct: 96 LLTYVLQRPNL-QKYVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQLISSCNPT-MQ 152
Query: 171 FIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQI 229
+ + L +L+ EFS S+ +S +GL EFH C+ + + L+ + + +++
Sbjct: 153 TLACSILTALLIEFSSSSKTSNIGLSMEFHGSCKRVFQDEDLRRIFMLTIEVLQEFSRR- 211
Query: 230 IESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECII 289
+ A L L +Q+L+W+F GR I +F + S+ ++
Sbjct: 212 --ENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMFES-----------SQNVM 257
Query: 290 VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTV 349
++P +W + L++S + ++ +R+ D +A + + + QL SL G +
Sbjct: 258 LKPTESWRETLLNSRVMELFFTVHRKIRE---------DSDMAQDSLQCLAQLASLHGPI 308
Query: 350 FPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPF 409
FP + + Q +L + G+L ++ IE SE+ + I+ + T
Sbjct: 309 FPDE--RSQVDYLAHFIEGLLSTIN-------GIEIEDSEAVGISNI-----ISNLIT-- 352
Query: 410 VFDRLLKSIRP---FGT-LTLLSNLMCEVVKVLMMNNT--EEGTWSWEARDILLDTWTTL 463
VF R + + P F + + L++L C + + ++ EA D LL++W TL
Sbjct: 353 VFPRNILTAIPSDLFSSFVNCLTHLTCSFGRSAALEEVLDKDDMVYMEAYDKLLESWLTL 412
Query: 464 LVSLDSTGR-----------------NVVLPLEVRNAAASLFALIVESELKVASASAMDD 506
+ + ++ P RN A+ A E + + DD
Sbjct: 413 VQDDQHFHKGFFTQHAVQVFNSYIQCHLAAPDGTRNLTANGVA---SREEEEINEIQEDD 469
Query: 507 NGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLH------------ 554
F+ ++L+S ++ R A D +PLLT L ER RLH
Sbjct: 470 RDLFS----------DQLASVGMLGRIASDHCIPLLTSLLEERVTRLHGQLQRHQQQLLA 519
Query: 555 -QGRGMIDPTETLEELYS----LLLITGHVLADEGEGEIPVVPNAI------QTHFVD-- 601
G ID + L++LY L+L+TG++LAD+ +GE P++P+ I Q+ VD
Sbjct: 520 SPGADSID-NKVLDDLYEDIHWLILVTGYLLADDTQGETPLIPSEIMEYSIKQSTEVDIN 578
Query: 602 -TIEAAKHP---------------VVLLCGSIIKFAEWSLDPEARAS------VFSPRLM 639
T++ P V+ L ++++ +E E+RA+ + SP++
Sbjct: 579 TTLQILGSPGEKASSIPGCNRTDSVIRLVSAVLRASE----VESRATRADLTHLLSPQMG 634
Query: 640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVL 698
+ IVWFL RW++TYL+ E+ D +L +T FG +G ++
Sbjct: 635 KDIVWFLKRWTKTYLLVDEKLYDQ-ISLPFNTA---------------FGADTEGCHWII 678
Query: 699 DIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFAN-DK 757
++ ++ L + E++L T QLL LV R+ ++ +W LA FA
Sbjct: 679 GYLLEKVISNLSVWSSEQELANETV-QLLVTLVERRERANLVIQCENWWNLAKQFAQRSP 737
Query: 758 TLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQ 817
L L+S+ QR+L + LVL + +S++ QY ++ + + + + + + + Q+
Sbjct: 738 PLNFLSSSVQRTLMKALVLGGFAHMDSDTKQQYWTEVLQPLQQRFLNVINQENFQQICQE 797
Query: 818 PDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKF 877
++ ++ LE L G A AT+ ++ + + L+EVYK+ V L+++
Sbjct: 798 EEVKQEITATLEALCGIAEATQIDNVAILFNFLMDFLTNCIGLMEVYKNNPETVNLIIEV 857
Query: 878 VVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGK---------------------- 915
V+ QI YL + + + C LLQ+YS +N+G+
Sbjct: 858 FVEVAHKQICYLGESKAMNLYEACLTLLQVYSKNNLGRKRIDVTAEEDQYQDLLLIMELL 917
Query: 916 --------VDFS-SDSI-----EAQAIN----ISQVVFFGLHIVTPLMSGDLLKYPKLCH 957
+DFS +D + QA N + VV +G++IV PLMS DLLK+P LC+
Sbjct: 918 TNLLSKEFIDFSDTDEVFRPHEPGQATNRPVSAADVVLYGVNIVLPLMSQDLLKFPSLCN 977
Query: 958 DYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYK 1017
Y+ L++ + E++PE + L + F ++ +L+ G+ SE+ +CL AL LA
Sbjct: 978 QYYKLITFICEIFPEKIPLLPEDLFKSLMYSLELGMTSMSSEVSQLCLEALTPLAE---- 1033
Query: 1018 ETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLI 1077
Q A +++ +P + FL+ + +L+ + ++ +M A +A + L+
Sbjct: 1034 -----------QCAKAQDTD-SPLLAAMRHFLKLVFDMLVLQKHNTEMTTAAGEAFYTLV 1081
Query: 1078 LCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFL 1137
Y L L+ Q +P RLA+A LT+S+ TLDR F K+L F+
Sbjct: 1082 CLNQAEYAELVETLLSSQQDPLIYQRLADAFNKLTASST-PPTLDRKQKMSFLKSLEEFM 1140
Query: 1138 VEVRGFL 1144
V G L
Sbjct: 1141 GNVGGLL 1147
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Mediates the nuclear export of proteins (cargos) with broad substrate specificity. Xenopus laevis (taxid: 8355) |
| >sp|Q9ESJ0|XPO4_MOUSE Exportin-4 OS=Mus musculus GN=Xpo4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9C0E2|XPO4_HUMAN Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q802D3|XPO4_DANRE Exportin-4 OS=Danio rerio GN=xpo4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5ZMR9|XPO4_CHICK Exportin-4 OS=Gallus gallus GN=XPO4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q54UP5|XPO4_DICDI Exportin-4 OS=Dictyostelium discoideum GN=xpo4 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q704U0|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1 | Back alignment and function description |
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| >sp|Q569Z2|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9UIA9|XPO7_HUMAN Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5R9G4|XPO7_PONAB Exportin-7 OS=Pongo abelii GN=XPO7 PE=2 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1147 | ||||||
| 302143624 | 1176 | unnamed protein product [Vitis vinifera] | 0.978 | 0.954 | 0.748 | 0.0 | |
| 255561939 | 1165 | protein with unknown function [Ricinus c | 0.975 | 0.960 | 0.737 | 0.0 | |
| 359488084 | 1123 | PREDICTED: exportin-4-like [Vitis vinife | 0.970 | 0.991 | 0.742 | 0.0 | |
| 297828948 | 1123 | hypothetical protein ARALYDRAFT_317312 [ | 0.946 | 0.967 | 0.689 | 0.0 | |
| 356571192 | 1117 | PREDICTED: exportin-4-like [Glycine max] | 0.971 | 0.997 | 0.681 | 0.0 | |
| 334185076 | 1118 | uncharacterized protein [Arabidopsis tha | 0.957 | 0.982 | 0.690 | 0.0 | |
| 356504127 | 1117 | PREDICTED: exportin-4-like [Glycine max] | 0.965 | 0.991 | 0.687 | 0.0 | |
| 449449573 | 1121 | PREDICTED: exportin-4-like [Cucumis sati | 0.972 | 0.995 | 0.676 | 0.0 | |
| 224145812 | 920 | predicted protein [Populus trichocarpa] | 0.794 | 0.990 | 0.617 | 0.0 | |
| 242039377 | 1165 | hypothetical protein SORBIDRAFT_01g01933 | 0.979 | 0.963 | 0.531 | 0.0 |
| >gi|302143624|emb|CBI22377.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1713 bits (4436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1175 (74%), Positives = 981/1175 (83%), Gaps = 53/1175 (4%)
Query: 16 GGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENS 75
G GPADL +LQ+ M +IEIACSSIQMHVNPAAAEATIL LCQSPQPY+ACQFILENS
Sbjct: 12 GSSDRGPADLTQLQATMQAIEIACSSIQMHVNPAAAEATILSLCQSPQPYQACQFILENS 71
Query: 76 QVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAA 135
QVANARFQAAAAIRDAA+REW LT+D+KKSLI FCLCFVMQHASSPEGYVQ+K+SSVAA
Sbjct: 72 QVANARFQAAAAIRDAAIREWGLLTSDDKKSLISFCLCFVMQHASSPEGYVQSKVSSVAA 131
Query: 136 QLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLP 195
QLMKRGWLDF +++KEAF +V QAVLG+HGVD QF GINFLESLVSEFSPSTS+AMGLP
Sbjct: 132 QLMKRGWLDFAAAEKEAFMYEVKQAVLGVHGVDVQFTGINFLESLVSEFSPSTSTAMGLP 191
Query: 196 REFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255
REFHEQC LEL+YLKTFYCWA+DAA+SVT +IIES +A EVK CTAALRL+ QILNW
Sbjct: 192 REFHEQCLKLLELEYLKTFYCWAQDAAVSVTSRIIESHSAVPEVKVCTAALRLMLQILNW 251
Query: 256 DFQFDTS---GRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNL 312
DF+++T+ G K S++ F+ GVR + +S KRSECI+VQPGP+W D LIS+GHI WLL L
Sbjct: 252 DFRYNTNMAKGAKPSMDAFNDGVRHDIASPKRSECILVQPGPSWRDVLISNGHIGWLLGL 311
Query: 313 YSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEW 372
Y ALRQKFS EGYWLDCP+AVSARKLIVQ CSLTGT+FPS N MQEHHLLQLLSGI+ W
Sbjct: 312 YGALRQKFSCEGYWLDCPVAVSARKLIVQFCSLTGTIFPSAN--MQEHHLLQLLSGIIPW 369
Query: 373 VDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMC 432
+DPP V+QAIE GKSESEMLDGCRALLS+ATVTTP VFD+LLKS+ PFGTLTLLS LMC
Sbjct: 370 IDPPHAVSQAIECGKSESEMLDGCRALLSMATVTTPTVFDQLLKSVSPFGTLTLLSTLMC 429
Query: 433 EVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIV 492
EV+KVLM NTEE TWSW ARDILLDTWTTLL+ + N P E NAAA+LFALIV
Sbjct: 430 EVIKVLMATNTEEETWSWMARDILLDTWTTLLIVCE----NARFPSEGINAAANLFALIV 485
Query: 493 ESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFAR 552
E+EL+ ASASA +D+ + YLQASISAMDERLSSYALIARAAID +PLLTRLF+ERFAR
Sbjct: 486 EAELRAASASAFNDDEDSQYLQASISAMDERLSSYALIARAAIDVAIPLLTRLFTERFAR 545
Query: 553 LHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVL 612
LHQG+G+ DPTETLEELYSLLLITGHVLADEGEGE P VP AIQTHFVD +E KHPVV+
Sbjct: 546 LHQGKGITDPTETLEELYSLLLITGHVLADEGEGETPSVPMAIQTHFVDIVETHKHPVVV 605
Query: 613 LCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTG 672
L +II+FAE SLD E R SVFSPRLMEA++WFLARWS TYLM EE R+ + N +G
Sbjct: 606 LSSTIIRFAEQSLDQEMRTSVFSPRLMEAVIWFLARWSSTYLMVPEECREDNCN----SG 661
Query: 673 YQHQS----STSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLH 728
Y H+S SRKALLSFFG++NQGKPVLD+IVRISM TL+SYPGEKDLQ LTC QLLH
Sbjct: 662 YDHESWLRSQHSRKALLSFFGQYNQGKPVLDVIVRISMMTLISYPGEKDLQALTCYQLLH 721
Query: 729 ALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSN 788
+LVRRKNVC HLVA SWRELA+AFAN +TL L+ST+QRSLAQTLVLSA GMRN E+SN
Sbjct: 722 SLVRRKNVCTHLVAFDSWRELANAFANGRTLFSLHSTHQRSLAQTLVLSASGMRNPEASN 781
Query: 789 QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYE 848
QYVRDLT H TAYLVE+S KNDLKN SQQPDIIL VSCLLERLRGAA A EPRTQKAIYE
Sbjct: 782 QYVRDLTSHMTAYLVEMSNKNDLKNFSQQPDIILSVSCLLERLRGAARALEPRTQKAIYE 841
Query: 849 MGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLY 908
MGFSVMN VL+LLEVYKHE AVVYLLLKFVVDWVDG+I YLE QET IV+DFC RLLQLY
Sbjct: 842 MGFSVMNSVLVLLEVYKHEFAVVYLLLKFVVDWVDGEIIYLEAQETAIVVDFCMRLLQLY 901
Query: 909 SSHNIGK------------------------------------VDFSSDSIEAQAINISQ 932
SSHNIGK VDFSSDSIE +ISQ
Sbjct: 902 SSHNIGKISVSLSSSLLSEAKTEMYKDLRALLQLIANLCSKDMVDFSSDSIETPGTSISQ 961
Query: 933 VVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFG 992
VV+FGLHIVTPL+S DLLKYPKLCHDYFSLLSH+LEVYPE VAQL++EAFAHVLGTLDFG
Sbjct: 962 VVYFGLHIVTPLISLDLLKYPKLCHDYFSLLSHMLEVYPEMVAQLNSEAFAHVLGTLDFG 1021
Query: 993 LHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSL 1052
LHHQD+E+VDMCL+ L+ALASYHYKET GK+GL + A+G +S+G +EG+LSRFLRSL
Sbjct: 1022 LHHQDTEVVDMCLKVLKALASYHYKETSIGKIGLGSHASGFKDSDGKFQEGILSRFLRSL 1081
Query: 1053 LQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLT 1112
LQLLLFEDYS D+VG AADALFPLILCE +YQRLG EL + QANP KSRL NALQSLT
Sbjct: 1082 LQLLLFEDYSTDLVGIAADALFPLILCEQGVYQRLGQELADSQANPTLKSRLVNALQSLT 1141
Query: 1113 SSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM 1147
SSNQLS TLDR+NY+RFRKNL +FL+EV GFLRTM
Sbjct: 1142 SSNQLSPTLDRINYKRFRKNLHSFLIEVHGFLRTM 1176
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561939|ref|XP_002521978.1| protein with unknown function [Ricinus communis] gi|223538782|gb|EEF40382.1| protein with unknown function [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|359488084|ref|XP_002266608.2| PREDICTED: exportin-4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297828948|ref|XP_002882356.1| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata] gi|297328196|gb|EFH58615.1| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|356571192|ref|XP_003553763.1| PREDICTED: exportin-4-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|334185076|ref|NP_187099.6| uncharacterized protein [Arabidopsis thaliana] gi|332640567|gb|AEE74088.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356504127|ref|XP_003520850.1| PREDICTED: exportin-4-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449449573|ref|XP_004142539.1| PREDICTED: exportin-4-like [Cucumis sativus] gi|449479730|ref|XP_004155691.1| PREDICTED: exportin-4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224145812|ref|XP_002325773.1| predicted protein [Populus trichocarpa] gi|222862648|gb|EEF00155.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|242039377|ref|XP_002467083.1| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor] gi|241920937|gb|EER94081.1| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1147 | ||||||
| ZFIN|ZDB-GENE-030131-3062 | 1152 | xpo4 "exportin 4" [Danio rerio | 0.307 | 0.306 | 0.241 | 3.9e-60 | |
| UNIPROTKB|F1P157 | 1146 | XPO4 "Exportin-4" [Gallus gall | 0.258 | 0.259 | 0.266 | 9.7e-58 | |
| UNIPROTKB|Q5ZMR9 | 1154 | XPO4 "Exportin-4" [Gallus gall | 0.258 | 0.257 | 0.266 | 1e-57 | |
| MGI|MGI:1888526 | 1151 | Xpo4 "exportin 4" [Mus musculu | 0.309 | 0.308 | 0.254 | 1.8e-44 | |
| RGD|1312015 | 1152 | Xpo4 "exportin 4" [Rattus norv | 0.309 | 0.308 | 0.259 | 3e-44 | |
| UNIPROTKB|Q9C0E2 | 1151 | XPO4 "Exportin-4" [Homo sapien | 0.307 | 0.306 | 0.248 | 3.5e-43 | |
| UNIPROTKB|E2QUP6 | 1151 | XPO4 "Uncharacterized protein" | 0.307 | 0.306 | 0.246 | 5.6e-43 | |
| UNIPROTKB|F1MVW4 | 1153 | XPO4 "Uncharacterized protein" | 0.445 | 0.443 | 0.237 | 1e-41 | |
| UNIPROTKB|F1RVA6 | 1002 | XPO4 "Uncharacterized protein" | 0.307 | 0.352 | 0.253 | 5.3e-34 | |
| TAIR|locus:4515103505 | 130 | AT4G38092 "AT4G38092" [Arabido | 0.089 | 0.792 | 0.572 | 3.9e-25 |
| ZFIN|ZDB-GENE-030131-3062 xpo4 "exportin 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 3.9e-60, Sum P(4) = 3.9e-60
Identities = 98/406 (24%), Positives = 190/406 (46%)
Query: 577 GHVLADEGEGEIPVVPNAIQTHF------VD---TIEAAKHP---------------VVL 612
G++LAD+ +GE P++P+ + + VD T++ P V+
Sbjct: 548 GYLLADDPQGETPLIPSEVMEYSIKHSTEVDINTTLQLLGSPGEKATSIPGCNRTDSVIR 607
Query: 613 LCGSIIKFAEWSLDPEA-RASV---FSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLC 668
L ++++ +E ++ A RAS+ SP++ + IVWFL RW++TYL+ E+
Sbjct: 608 LLSAVLRTSE--VESRATRASLTQLLSPQMGKDIVWFLRRWAKTYLLVDEKL-------- 657
Query: 669 HDTGYQHQSSTSRKALLSFFGEHNQGKP-VLDIIVRISMTTLVSYPGEKDLQELTCNQLL 727
Y S L + FG +G ++ ++ + L + E +L T +LL
Sbjct: 658 ----YGQISMP----LSTAFGADTEGAQWIVGYLLEKVINNLSVWSSEPELANDTV-ELL 708
Query: 728 HALVRRKNVCVHLVALGSWRELASAFAN-DKTLILLNSTNQRSLAQTLVLSAYGMRNSES 786
LV ++ +V +W LA FA+ L +L+ST QR+L + LVL + +S++
Sbjct: 709 VTLVEKRERANIVVQCENWWSLAKQFASRSPPLHMLSSTVQRTLMKALVLGGFAHMDSDT 768
Query: 787 SNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAI 846
QY ++ + L + + + Q+ + + LE L G A AT+ ++
Sbjct: 769 KQQYWAEVLHPLQQRFLNLINQENFAQICQEEAVKQEIVATLEALCGIAEATQIDNVASL 828
Query: 847 YEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQ 906
+ ++ + L+EVY++ V L+++ V+ QI YL ++ + + C LLQ
Sbjct: 829 FSFLMDFLSSCIGLMEVYRNSPETVNLIIEVFVEVAHKQICYLGETKSMKLYEVCLTLLQ 888
Query: 907 LYSSHNIGKVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKY 952
+YS +N+G+ + E Q ++ + + ++T L+S + + +
Sbjct: 889 VYSKNNLGRKRLDVAAEEDQYQDLLLI----MELLTNLLSKEFIDF 930
|
|
| UNIPROTKB|F1P157 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ZMR9 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1888526 Xpo4 "exportin 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1312015 Xpo4 "exportin 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9C0E2 XPO4 "Exportin-4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QUP6 XPO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MVW4 XPO4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RVA6 XPO4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:4515103505 AT4G38092 "AT4G38092" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1147 | |||
| KOG1410 | 1082 | consensus Nuclear transport receptor RanBP16 (impo | 100.0 | |
| COG5101 | 1053 | CRM1 Importin beta-related nuclear transport recep | 100.0 | |
| KOG4541 | 748 | consensus Nuclear transport receptor exportin 4 (i | 100.0 | |
| KOG2020 | 1041 | consensus Nuclear transport receptor CRM1/MSN5 (im | 100.0 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 99.98 | |
| KOG4541 | 748 | consensus Nuclear transport receptor exportin 4 (i | 99.8 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 99.77 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 99.69 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.44 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.43 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 99.24 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 98.93 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.62 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 98.62 | |
| PF03810 | 77 | IBN_N: Importin-beta N-terminal domain; InterPro: | 98.54 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 97.84 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 97.59 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 97.58 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 96.81 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 94.95 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 91.5 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 86.83 |
| >KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-164 Score=1362.33 Aligned_cols=998 Identities=19% Similarity=0.284 Sum_probs=887.3
Q ss_pred HHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 001132 33 HSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (1147)
Q Consensus 33 ~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~ 109 (1147)
.++|.+|+.+|.+.| |.+||+.|.+|..+|+++++|+.+|++++.||.++.|+++|.+.+.++ +.||.++|.+||+
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrldir~ 83 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLDIRN 83 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHHHHH
Confidence 789999999999776 799999999999999999999999999999999999999999999998 5899999999999
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHHhhccCCCCCch--hhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCC
Q 001132 110 FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDK--EAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (1147)
Q Consensus 110 ~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~--~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s~~ 187 (1147)
|+++|+.+++|.+++||...+++++|+++|.||+|..+.+. .+.+.++.++++. ++.+||++|+.||+.|++||+..
T Consensus 84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~-~~ve~~~igv~iLsqLvqemN~~ 162 (1082)
T KOG1410|consen 84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQM-DNVEHCIIGVQILSQLVQEMNQA 162 (1082)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999998654221 2566667777764 56899999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHHHHHHcccccccCCCCCcc
Q 001132 188 TSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAA-ASEVKACTAALRLLHQILNWDFQFDTSGRKI 266 (1147)
Q Consensus 188 ~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~-~~~~~l~~~~L~l~~~~LswdF~~~~~d~~~ 266 (1147)
+.+.|..+|||.+.+|||+.|.+||.+++..|+.... -+.+ .....++.++|++..+||+|||+|++.||+
T Consensus 163 ---~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~----~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs- 234 (1082)
T KOG1410|consen 163 ---DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVD----LNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES- 234 (1082)
T ss_pred ---CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcc----cCcccHhHhhHHHHHHHHHhhhccccccccccccc-
Confidence 6789999999999999999999999999999987762 1111 123578999999999999999999999997
Q ss_pred cccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHhhcc
Q 001132 267 SINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLT 346 (1147)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~ 346 (1147)
+||..++|+|++||..|.|++++++||++|..+| |+++..++.||+|+||+|
T Consensus 235 -----------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp-----------~~~S~~alsclvqlASvR 286 (1082)
T KOG1410|consen 235 -----------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLP-----------PELSELALSCLVQLASVR 286 (1082)
T ss_pred -----------------cccccceecCcHHHHHhcCchHHHHHHHHhccCC-----------chhhHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999875 568999999999999999
Q ss_pred cCccCCCChhhHHHHHHHHHHhhhhhcCChhHHHHHHHhCCChhhHHHHHHHHHHHHhccChhhhHhhhhccCcchhHHH
Q 001132 347 GTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTL 426 (1147)
Q Consensus 347 ~~~f~~~~~~~r~~yl~~~l~~i~~il~~~~~~~~~~~~g~~~~~~~e~cr~L~~l~~~~~~~~~~~~~~~~~q~~~l~~ 426 (1147)
+++|++.+ |.+|+.++++|+..|+++|..++ ++.+||||||+|+||++| ||+++|.+
T Consensus 287 RsLFN~ae---Ra~yl~~Lv~Gvk~il~np~~Ls-------D~~nyHeFCRllaRlktN-------------YQL~ELv~ 343 (1082)
T KOG1410|consen 287 RSLFNGAE---RAKYLQHLVEGVKRILENPQGLS-------DPANYHEFCRLLARLKTN-------------YQLGELVK 343 (1082)
T ss_pred HHHhCCHH---HHHHHHHHHHHHHHHHhCCcCCC-------CcchHHHHHHHHHHHHhh-------------hhhHhhhc
Confidence 99997766 99999999999999999876444 689999999999999665 68888888
Q ss_pred HHHHHHHHHHH---HhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccc
Q 001132 427 LSNLMCEVVKV---LMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASA 503 (1147)
Q Consensus 427 l~~lt~~~i~~---~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~~~~~~~~~p~~~~~~~~~I~~~yi~srl~~~~~~~ 503 (1147)
+++ |.++|+. +++.+...|.|+++|++|||..|.+|+.++||+ +...||.+.+|+|+|.++||+||+..++...
T Consensus 344 v~~-Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyv--k~~~phlLd~y~PeIt~afi~SRl~sV~~iv 420 (1082)
T KOG1410|consen 344 VEC-YPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYV--KNTEPHLLDTYCPEITKAFITSRLQSVEIIV 420 (1082)
T ss_pred cCC-cHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcc--cCCChHHHhhhcHHHHHHHHHHHhhhhheec
Confidence 877 7777665 455567779999999999999999999999995 5567888999999999999999999887544
Q ss_pred CCCCCcchhhhcchhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcc--cCCCCc-c-hHHH-HHHHHHHHHhh
Q 001132 504 MDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG--RGMIDP-T-ETLE-ELYSLLLITGH 578 (1147)
Q Consensus 504 ~~~~d~~e~~~~d~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~--~~~~~~-~-~~~E-~L~WLi~i~g~ 578 (1147)
.|+ -|++.||.+...+||+.++++|||.|+.||.+|+++|++..+.|++. +++.+. + .+.| +|.|+|+|+|+
T Consensus 421 --rd~-~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgt 497 (1082)
T KOG1410|consen 421 --RDG-LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGT 497 (1082)
T ss_pred --ccC-CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHH
Confidence 222 45677777889999999999999999999999999999999988653 233222 2 5566 99999999999
Q ss_pred HcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccc
Q 001132 579 VLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLE 658 (1147)
Q Consensus 579 ~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~ 658 (1147)
++++...|... +.++++++|..++| .+++++.+.+++. + ...+++.+++||+.+|+++|++
T Consensus 498 vV~gk~t~~St--------d~~d~mDgEL~arv---lql~nlmdsr~~~--~---~n~rle~ail~f~eqFRk~Yvg--- 558 (1082)
T KOG1410|consen 498 VVGGKTTATST--------DEHDAMDGELSARV---LQLVNLMDSRLPL--K---GNERLELAILHFLEQFRKAYVG--- 558 (1082)
T ss_pred Hhcceeccccc--------chhhhhhhHHHHHH---HHHHHhhhcccch--h---hhHHHHHHHHHHHHHHHHHHHH---
Confidence 99988766444 56788999988888 8999999887643 2 3678999999999999999998
Q ss_pred cccccCCCcCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHhhcccccc
Q 001132 659 EFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCV 738 (1147)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g~~vl~~~l~~i~~~L~~w~~e~~v~~~t~~~LL~~L~~~~~~~~ 738 (1147)
|+. .++++++.++.+.+|. ++..+++++|+.||.+||++|++.++|++.++ .||++|+.+++.++
T Consensus 559 DQ~-------------~rsSkvY~rl~e~Lgi-~de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-slf~dLs~GY~~~k 623 (1082)
T KOG1410|consen 559 DQI-------------QRSSKVYARLSEVLGI-TDESDVLGVIVGKILTNLKYWGRNEPVISLTL-SLFNDLSLGYSAVK 623 (1082)
T ss_pred HHH-------------HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhcccccCCchHHHHHH-HHHHHHhhhHHHHH
Confidence 655 3477899999999998 68899999999999999999999999999999 89999999999999
Q ss_pred hhhccchHHHHHHHhhchhhhhcccc------hhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhhCCCccc
Q 001132 739 HLVALGSWRELASAFANDKTLILLNS------TNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLK 812 (1147)
Q Consensus 739 ~l~~~~~~~~l~~~~~~~~~~~~l~~------~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p~~~~~~~l~~~~~~~ 812 (1147)
+|+++|.++.+++||.++|++|.-+. ..|++||.++++++. .|.++++..|++||.|++..|+.+++..+.+
T Consensus 624 kL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~--~d~sede~~fe~fm~PLt~~fe~v~~~~~nn 701 (1082)
T KOG1410|consen 624 KLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLM--VDLSEDEDMFERFMLPLTDAFEGVLQVFQNN 701 (1082)
T ss_pred HHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHh--hcccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999886332 367889999999865 4556678899999999999999888664432
Q ss_pred ccccchhHHHHHHHHHHHhhhhhhccCCC-cHHHHHHHHHhh-HHHHHHHHHHhccchHHHHHHHHHHHHHhhccccccc
Q 001132 813 NVSQQPDIILLVSCLLERLRGAANATEPR-TQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLE 890 (1147)
Q Consensus 813 ~~~~~~~ii~~~~~ll~~lrGi~~a~~~~-~~~~l~~~l~~~-~~~~~~ll~~y~~~~~vv~~iLkl~~e~v~n~~~~l~ 890 (1147)
...+.+++..++|++|||||||.|.+++ +|.++|+|+||. +|++...++.|.++|+|++|||||++|+|+|+++|+.
T Consensus 702 -~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~ 780 (1082)
T KOG1410|consen 702 -CFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLK 780 (1082)
T ss_pred -cccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhhHhhee
Confidence 3567889999999999999999999988 789999999999 9999999999999999999999999999999999999
Q ss_pred cc----chhhHHHHHHHHHHHhhcC------------------------------------ccceeEccCCchhhhhhch
Q 001132 891 VQ----ETNIVIDFCTRLLQLYSSH------------------------------------NIGKVDFSSDSIEAQAINI 930 (1147)
Q Consensus 891 ~~----~~~~l~~~~~~li~~y~~~------------------------------------~~g~~~l~~d~~~~~~l~~ 930 (1147)
|+ +|++|||+.+|++.+|+++ |+|+|.+|+|+..+++++.
T Consensus 781 Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~ 860 (1082)
T KOG1410|consen 781 FDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQT 860 (1082)
T ss_pred cccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHH
Confidence 97 7899999999999999755 3689999999777777766
Q ss_pred hhHhhhhheeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhccccCHHHHHHHHHHHHH
Q 001132 931 SQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRA 1010 (1147)
Q Consensus 931 ~~vv~~~l~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~ 1010 (1147)
+.+|.+.||. .|+++|||+.++||.|++.+++.|+.++.+|+++.|.+++.||..||++.|+.|++.||.++|+
T Consensus 861 ----fvKm~lsIp~--sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~ 934 (1082)
T KOG1410|consen 861 ----FVKMLLSIPH--SDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDT 934 (1082)
T ss_pred ----HHHHHhcCCH--HHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHH
Confidence 6999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCccchhhhhccCCCC----CCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHHHHhCCHHHHHH
Q 001132 1011 LASYHYKETGAGKVGLAAQAAGINNSN----GNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQR 1086 (1147)
Q Consensus 1011 l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~LI~~~~~~f~~ 1086 (1147)
+++|+||+..++.++.....+++++.+ .+++|++++++|++++++++||||+||| ++||||++||++++++|..
T Consensus 935 i~tYlfk~itr~~~p~~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQW--SlSRPlLgLILi~E~~fSd 1012 (1082)
T KOG1410|consen 935 IVTYLFKRITRSTKPTRKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQW--SLSRPLLGLILINEKYFSD 1012 (1082)
T ss_pred HHHHHHHHHhccCCCcCcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccc--cccchhhHHHhhhHHHHHH
Confidence 999999999876655443333333322 2677999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhccc
Q 001132 1087 LGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLR 1145 (1147)
Q Consensus 1087 l~~~li~~q~~~~~~~~l~~aF~~L~~~~~~~~~l~~~nr~~F~~nl~~F~~~vr~~L~ 1145 (1147)
++.+|+++|| +++||++..||++||.|++ +|++.|||||||+|++.||++|+-.|+
T Consensus 1013 lk~~l~ssQp-~dkqq~l~~cF~~LM~~ve--~nL~~KNrD~FTQNLt~FRrdv~~~lk 1068 (1082)
T KOG1410|consen 1013 LKASLTSSQP-YDKQQDLDMCFTNLMEGVE--RNLTVKNRDRFTQNLTRFRRDVALVLK 1068 (1082)
T ss_pred HHHHHhcCCC-cchhHHHHHHHHHHHHHHh--hcccccchhHHHHHHHHHHHHHHHHhc
Confidence 9999999998 9999999999999999855 999999999999999999999987665
|
|
| >COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope | Back alignment and domain information |
|---|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 6e-15
Identities = 112/680 (16%), Positives = 189/680 (27%), Gaps = 209/680 (30%)
Query: 281 SSKRSECIIVQPGPAWCDALISSGHIVWLLNLY-SALRQKFSSEG----Y-WLDCPIAVS 334
S + + II+ DA+ + + W L + QKF E Y +L PI
Sbjct: 47 SKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 335 AR-------KLIVQLCSL--TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIE- 384
R I Q L VF N + +L +L +LE +V+ +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLG 160
Query: 385 SGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGT--LTLLSNLMCEVVKVLMMNN 442
SGK+ LD C ++ F L L N + M+
Sbjct: 161 SGKT-WVALDVCL--------------SYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQK 204
Query: 443 TEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLE-VRNAAASLF-------ALIVES 494
LL S N+ L + ++ L L+V
Sbjct: 205 -------------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-- 249
Query: 495 ELKVASASAMDD--NGEFNYLQASISAMDERLSSYALIA---RAAIDATVPLLTRLFSER 549
+ + N + + +A + LS L+ + D T S
Sbjct: 250 ---------LLNVQNAK------AWNAFN--LSCKILLTTRFKQVTDFLSAATTTHIS-- 290
Query: 550 FARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAK-H 608
L + P E L L D ++P E +
Sbjct: 291 ---LDHHSMTLTPDEVKS-LLLKYL-------DCRPQDLPR-------------EVLTTN 326
Query: 609 PVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLC 668
P L SII AE D A W W L +SS
Sbjct: 327 PRRL---SII--AESIRDGLAT-------------W--DNWKHVNCDKLTTIIESS---- 362
Query: 669 HDTGYQHQSSTSRKAL---LSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQ 725
+ + LS F I L + +
Sbjct: 363 ----LNVLEPAEYRKMFDRLSVFPPS----------AHIPTILLSLIWFDVIKSD--VMV 406
Query: 726 LLHALVRRKNVCVHLVALGSWRELASAFANDKTL-ILLNSTNQRSLAQTLVLSAYGMRNS 784
+++ L + LV + ++ L + + N+ +L +++V Y + +
Sbjct: 407 VVNKLHKYS-----LVE--KQPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKT 458
Query: 785 ESSNQYVRD---------LTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAA 835
S+ + + H +E + L + L L +++R +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTL-----FRMVFLDFRFLEQKIRHDS 511
Query: 836 NATEPRTQKAIYEMGFSVMNPVLLLLEVYK--------HESAVVYLLLKFVVDWVDGQIS 887
A S++N L L+ YK +V +L F
Sbjct: 512 TAWNASG---------SILN-TLQQLKFYKPYICDNDPKYERLVNAILDF---------- 551
Query: 888 YLEVQETNIVIDFCTRLLQL 907
L E N++ T LL++
Sbjct: 552 -LPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 | Back alignment and structure |
|---|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 | Back alignment and structure |
|---|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 | Back alignment and structure |
|---|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 | Back alignment and structure |
|---|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 | Back alignment and structure |
|---|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 | Back alignment and structure |
|---|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Length = 321 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1147 | |||
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 100.0 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 100.0 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 100.0 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 100.0 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 100.0 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 100.0 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 99.96 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.79 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 99.65 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.59 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.46 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.11 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.52 |
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-59 Score=598.89 Aligned_cols=906 Identities=14% Similarity=0.164 Sum_probs=633.6
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Q 001132 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (1147)
Q Consensus 33 ~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~~~~lr~~ 110 (1147)
+.+|+++.++|+|.+ |++|+++|.+|+++|++|..|..||++|++++++|||+++|+++|.++|+.+|+++|.+||++
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~ 107 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY 107 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 455666777788753 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC-----CchhHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhC
Q 001132 111 CLCFVMQHASS-----PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (1147)
Q Consensus 111 ll~~l~~~~~~-----~~~~v~~~l~~~la~i~K~~W~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~l~iL~~lv~E~s 185 (1147)
+++++.+...+ .++.+++|+++++|.|+|++|++ .|++++.++++.+.+ ++.++..++.+|..+++|..
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT--SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHH
Confidence 99999875322 34777899999999999999998 688999999999874 78899999999999999976
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCc
Q 001132 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK 265 (1147)
Q Consensus 186 ~~~ss~~~~~~~~h~k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~ 265 (1147)
..++ ..++..+..+.+..++.. ++.|++++..+|++. ....++..+|+++..+++|...+.
T Consensus 182 d~~~--~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~~----- 242 (1073)
T 3gjx_A 182 DFSS--GQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLGY----- 242 (1073)
T ss_dssp TSHH--HHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH-----
T ss_pred hccc--ccccHHHHHHHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHHH-----
Confidence 4321 134567778899999986 999999888877542 145678899999999999996553
Q ss_pred ccccccccccccccCCCCccccccccCCcccHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHhhc
Q 001132 266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSL 345 (1147)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~~~llf~ly~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl 345 (1147)
+.+++++++++..+ + .++.++..|++||.++.+.
T Consensus 243 ----------------------------------i~~~~ll~~L~~~~--L----------~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 243 ----------------------------------IFETKLISTLIYKF--L----------NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp ----------------------------------HHSSSHHHHHHHHT--S----------SSHHHHHHHHHHHHHHHHS
T ss_pred ----------------------------------hccchHHHHHHHHh--c----------CChHHHHHHHHHHHHHHhc
Confidence 56677888774222 2 2377999999999999998
Q ss_pred ccCccCCCChhhHHHHHHHHHHhhhhhcCChhHHHHHHHhCCCh--hhHHHHHHHHHHHHhccChhhhHhhhhccCcchh
Q 001132 346 TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE--SEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGT 423 (1147)
Q Consensus 346 ~~~~f~~~~~~~r~~yl~~~l~~i~~il~~~~~~~~~~~~g~~~--~~~~e~cr~L~~l~~~~~~~~~~~~~~~~~q~~~ 423 (1147)
+.+ + ....-...+..++..+..+++...++.+++..|.++ +-+..+||++..+...|. .++..+.. .
T Consensus 277 ~~~---~-~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-----~lIe~~p~--~ 345 (1073)
T 3gjx_A 277 SVS---Q-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-----QLLEKRLN--L 345 (1073)
T ss_dssp CSG---G-GHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-----HHHHHCGG--G
T ss_pred ccc---c-hHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-----HHHhcCcc--c
Confidence 532 1 112234566677777778888777788888877532 344568888877776653 11111000 0
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhccc----ccCCCCC---------CChhhhhhHHHHHH-
Q 001132 424 LTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLD----STGRNVV---------LPLEVRNAAASLFA- 489 (1147)
Q Consensus 424 l~~l~~lt~~~i~~~~~~~~~~~~~~~es~~~lL~~W~~lv~~~~----~~~~~~~---------~p~~~~~~~~~I~~- 489 (1147)
.. .+...+-..... +..++ .|.+++++++|..|...+- +..+..+ .|... ..-..||.
T Consensus 346 ~~---~l~~~l~~ll~~-s~~~d---~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~-~~y~~i~~~ 417 (1073)
T 3gjx_A 346 RE---ALMEALHYMLLV-SEVEE---TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRR-QLYLTVLSK 417 (1073)
T ss_dssp HH---HHHHHHHHHHHH-TTCSC---HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHH-HTTHHHHHH
T ss_pred hH---HHHHHHHHHHHH-hCCCc---HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHH-HHHHHHHHH
Confidence 00 001111111111 22233 7999999999999988652 1000010 11111 11123443
Q ss_pred --HHHhccccccccccCCCCCcch--hh--hcc--hhHHHHHHHHHHHhhhhchhhhHHHHHHHHHHHHHHHhcccCCCC
Q 001132 490 --LIVESELKVASASAMDDNGEFN--YL--QAS--ISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMID 561 (1147)
Q Consensus 490 --~yi~srl~~~~~~~~~~~d~~e--~~--~~d--~~~~~eqL~~ia~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~ 561 (1147)
..+.+||++|+++..+|+|++| ++ .|. ...|+-+.+++.++++.+++++...+.+.+.... +++ .
T Consensus 418 L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~------~~~-~ 490 (1073)
T 3gjx_A 418 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQV------NGT-E 490 (1073)
T ss_dssp HHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH------TSC-C
T ss_pred HHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh------cCC-C
Confidence 3477999999987765666666 22 232 4688999999999999999999999888887654 222 4
Q ss_pred cc-hHHHHHHHHHHHH-hhHcccCCCCccccCchhhhhhhhhhhhccCCchHhHHHHHHHHHHhhcCcccccccCCHHHH
Q 001132 562 PT-ETLEELYSLLLIT-GHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLM 639 (1147)
Q Consensus 562 ~~-~~~E~L~WLi~i~-g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~ 639 (1147)
|+ ..+|.++|.++.+ |++.. +.|...++.++..++++++...+++.++ .++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~----------------------~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~-----~va 543 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHE----------------------EDEKRFLVTVIKDLLGLCEQKRGKDNKA-----IIA 543 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCH----------------------HHHHHHHHHHHHHHHHHHHHSCSHHHHH-----HHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCc----------------------ccccchHHHHHHHHhcccccccccchhH-----HHH
Confidence 43 5889999999755 33311 0133457888899999998766665544 588
Q ss_pred HHHHHHHHHHHhhhcCccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHHhcccCCCchh
Q 001132 640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKD 717 (1147)
Q Consensus 640 ~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~fg~~~~g--~~vl~~~l~~i~~~L~~w~~e~~ 717 (1147)
.+++|.+|||++ |+ ..+ +++...+.+.+++++++.++| +++++.|.++...|-..+..-.+
T Consensus 544 s~i~~vlgrY~~-wl----~~h------------~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~ 606 (1073)
T 3gjx_A 544 SNIMYIVGQYPR-FL----RAH------------WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQV 606 (1073)
T ss_dssp HHHHHHHHHCHH-HH----HHC------------HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCT
T ss_pred HHHHHHHhhhHH-HH----HhC------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 899999999987 87 444 466778999999999988888 78999999888888876522100
Q ss_pred HHHHHHHHHHHHHhhcccccchhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCCccchHHHHHHHHH
Q 001132 718 LQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRH 797 (1147)
Q Consensus 718 v~~~t~~~LL~~L~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~p 797 (1147)
- -..|.+..+++.+.. ....++++....||+++|.+++..++...+.++++.+|.|
T Consensus 607 ~----------------------e~~p~i~~il~~~~~--~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~ 662 (1073)
T 3gjx_A 607 G----------------------EVMPFIDEILNNINT--IICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLL 662 (1073)
T ss_dssp T----------------------CSSCHHHHHHTSHHH--HHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHH
T ss_pred c----------------------ccchHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 0 002333334433321 2234788888899999999999877666678899999999
Q ss_pred HHHHHHHhhCCCccc-ccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhccchHHHHHHH
Q 001132 798 ATAYLVELSGKNDLK-NVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLL 875 (1147)
Q Consensus 798 ~~~~~~~l~~~~~~~-~~~~~~~ii~~~~~ll~~lrGi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~vv~~iL 875 (1147)
+.+.|+++.++...+ +...+++.++.+..++|++..+|.+.+.. +.++ .+++++++++|+.+++.+.
T Consensus 663 ~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~--------f~~~~~~i~~~~l~~y~~~s~~i~--- 731 (1073)
T 3gjx_A 663 PNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHP--------FVIQLGRIYLDMLNVYKCLSENIS--- 731 (1073)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh--------HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999998643222 45667887889999999999999999864 3333 6778899999999888775
Q ss_pred HHHHHHhhcccccccc----cchhhHHHHHHHHHHHhhcCccc------ee-------EccCCc------hhhhhhchhh
Q 001132 876 KFVVDWVDGQISYLEV----QETNIVIDFCTRLLQLYSSHNIG------KV-------DFSSDS------IEAQAINISQ 932 (1147)
Q Consensus 876 kl~~e~v~n~~~~l~~----~~~~~l~~~~~~li~~y~~~~~g------~~-------~l~~d~------~~~~~l~~~~ 932 (1147)
+.|...+..... ...+.+++++++++++|..+.-. .+ ++.+|. ..+++|.+..
T Consensus 732 ----~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s 807 (1073)
T 3gjx_A 732 ----AAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMA 807 (1073)
T ss_dssp ----HHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHH
T ss_pred ----HHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHH
Confidence 333332222211 12477899999999999765310 00 333332 2356666666
Q ss_pred Hhhhhh----------------eeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCCHHHHHHHHHHHHhhcccc
Q 001132 933 VVFFGL----------------HIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQ 996 (1147)
Q Consensus 933 vv~~~l----------------~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~~~~f~~ll~sl~~Gl~~~ 996 (1147)
+++.++ .+|++||++|+.+||+++..||+|++.++++||..+.++|++.|+.+++|+.||++|.
T Consensus 808 ~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~ 887 (1073)
T 3gjx_A 808 IIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHT 887 (1073)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 665553 4899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhhcCCCchHHHHhhhhHH-
Q 001132 997 DSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFP- 1075 (1147)
Q Consensus 997 ~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il~~~~~~~~~~~~s~~Ll~- 1075 (1147)
+++|+..++.++.+++..+.+. +..... + ..+....++..+|..+.--.+..-. .--+..|..
T Consensus 888 ~r~i~~~~l~~~~~ll~~~~~~-----~~~~~~-F---------~~~~~~~~~~~i~~v~td~~h~~~f-~~q~~il~~l 951 (1073)
T 3gjx_A 888 MRNVADTGLQILFTLLQNVAQE-----EAAAQS-F---------YQTYFCDILQHIFSVVTDTSHTAGL-TMHASILAYM 951 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTC-----HHHHHH-H---------HHHHHHHHHHHHHHHHTCTTCGGGH-HHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhhcC-----hHHHHH-H---------HHHHHHHHHHHHHHHHhCchHhhhh-hHHHHHHHHH
Confidence 9999999999999988776431 111110 0 0223333444444422111111000 000111111
Q ss_pred --HHh--------------CCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHH
Q 001132 1076 --LIL--------------CEPRLYQRLGSELI-ERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLV 1138 (1147)
Q Consensus 1076 --LI~--------------~~~~~f~~l~~~li-~~q~~~~~~~~l~~aF~~L~~~~~~~~~l~~~nr~~F~~nl~~F~~ 1138 (1147)
++. -++.+.+++..+++ ++-|+ -.++.+..--..|.+. .++..+|+..+..|+.
T Consensus 952 ~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~-~~~~qi~~fv~~l~~~--------~~d~~~f~~~lrDFli 1022 (1073)
T 3gjx_A 952 FNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPH-LQDAQVKLFVTGLFSL--------NQDIPAFKEHLRDFLV 1022 (1073)
T ss_dssp HHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHH
Confidence 111 15678888888877 44453 3333344433355542 2467899999999999
Q ss_pred Hhhhc
Q 001132 1139 EVRGF 1143 (1147)
Q Consensus 1139 ~vr~~ 1143 (1147)
.+|.+
T Consensus 1023 ~~ke~ 1027 (1073)
T 3gjx_A 1023 QIKEF 1027 (1073)
T ss_dssp HHTSC
T ss_pred HHHHH
Confidence 98876
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1147 | ||||
| d1w9ca_ | 321 | a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Ho | 1e-23 |
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (252), Expect = 1e-23
Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 38/238 (15%)
Query: 920 SDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLST 979
I A+ I VF +++ D +YP+ ++F LL + +
Sbjct: 106 GGHITAEIPQIFDAVFE---CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP 162
Query: 980 EAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGN 1039
F VL ++ + H + D L+ L L +E A +
Sbjct: 163 TQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQT----------- 211
Query: 1040 PEEGVLSRFLRSLLQLLL------FEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIE 1093
+ +LQ + M + +F L+ E +
Sbjct: 212 --------YFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLV--EEGKISTSLNPGNP 261
Query: 1094 RQANPPFKSRLANALQSLT---SSNQLSSTL-----DRVNYQRFRKNLTNFLVEVRGF 1143
+ +AN L+S Q+ + + F+++L +FLV+++ F
Sbjct: 262 VNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEF 319
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1147 | |||
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 99.74 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.51 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.28 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.2 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.29 |
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=8.3e-18 Score=184.00 Aligned_cols=263 Identities=16% Similarity=0.203 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhcCccc------ee-------EccC
Q 001132 854 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIG------KV-------DFSS 920 (1147)
Q Consensus 854 ~~~~~~ll~~y~~~~~vv~~iLkl~~e~v~n~~~~l~~~~~~~l~~~~~~li~~y~~~~~g------~~-------~l~~ 920 (1147)
..++.+++++|+.+++.+....+--++.+.++... ..-+.+.|++++++++|.+++-- .+ ++.+
T Consensus 5 ~~i~~dml~~Y~~~S~~I~~~i~~~G~~~~k~~~v---r~lr~iKkeiLkLi~t~i~~~~d~~~v~~~~i~pl~~~vL~D 81 (321)
T d1w9ca_ 5 GRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLI---RSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLID 81 (321)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHCSGGGGSHHH---HHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHhhccHHH---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999985555444444432200 12378999999999999877410 00 2222
Q ss_pred C------chhhhhhchhhHhhhhh----------------eeeecccccccccchhhHHhHHHHHHHHHhhchhhhhcCC
Q 001132 921 D------SIEAQAINISQVVFFGL----------------HIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLS 978 (1147)
Q Consensus 921 d------~~~~~~l~~~~vv~~~l----------------~~~ipli~~dll~yPkl~~~yf~Ll~~l~e~~~~~l~~L~ 978 (1147)
| ...++++++..+++.++ .++++||++|+.+||++|..||+||+.++++||..+.+||
T Consensus 82 Y~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp 161 (321)
T d1w9ca_ 82 YQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIP 161 (321)
T ss_dssp HHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSC
T ss_pred HHhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCC
Confidence 2 22355666555555442 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHH-
Q 001132 979 TEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLL- 1057 (1147)
Q Consensus 979 ~~~f~~ll~sl~~Gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~il- 1057 (1147)
++.|+.+++|+.||++|.+++|+..|++++..++..+.+... .+. .+ ..+.+..++..+|..+.
T Consensus 162 ~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~-----~~~-~F---------~~~y~~~il~~if~vltD 226 (321)
T d1w9ca_ 162 PTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEA-----AAQ-SF---------YQTYFCDILQHIFSVVTD 226 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHH-----HHH-HH---------HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChH-----HHH-HH---------HHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999987765321 111 01 12444555666666443
Q ss_pred -hhcCCCchHHHHhhhhHHHHh--------------CCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHhhcCCCCCCCc
Q 001132 1058 -FEDYSPDMVGTAADALFPLIL--------------CEPRLYQRLGSELI-ERQANPPFKSRLANALQSLTSSNQLSSTL 1121 (1147)
Q Consensus 1058 -~~~~~~~~~~~~s~~Ll~LI~--------------~~~~~f~~l~~~li-~~q~~~~~~~~l~~aF~~L~~~~~~~~~l 1121 (1147)
+++.+-+....+-+.|+.++- -++.+-.++..+++ +.-|+ -..+.+...-..|.+
T Consensus 227 ~~Hk~gf~~q~~iL~~Lf~ive~~~i~~~l~~~~~~~n~~~l~e~l~~lL~~~Fp~-l~~~qi~~fv~~Lf~-------- 297 (321)
T d1w9ca_ 227 TSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPH-LQDAQVKLFVTGLFS-------- 297 (321)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHH--------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccccccccccccccchHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHH--------
Confidence 123332222222333333321 12334455444444 33342 222333333333332
Q ss_pred ChhhHHHHHHHHHHHHHHhhhc
Q 001132 1122 DRVNYQRFRKNLTNFLVEVRGF 1143 (1147)
Q Consensus 1122 ~~~nr~~F~~nl~~F~~~vr~~ 1143 (1147)
...++.+|+.++..|+..+|+|
T Consensus 298 ~~~d~~~Fk~~lrDFLI~~kef 319 (321)
T d1w9ca_ 298 LNQDIPAFKEHLRDFLVQIKEF 319 (321)
T ss_dssp TTTCHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHhHHhhhc
Confidence 1467889999999999999986
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|