Citrus Sinensis ID: 001134

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140-----
MHVTGDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEASYGYSTTVYVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISHEINDVGNFTSQKAAEPDQSEAYGDRFKFESKLPAKPIQMSSEESESSDRSSSSEVPQRKDDEVEVEFHADGEGASCTYESSDASFSGFSASHTSSESSDDVSVCESIISNESEKLDGPLSADITLDMLDNALNVKKLEERKPLSPKFAKLVDSVDNFTKLNRFCETKPGCSGDLQCTPANSLGLGASHMNVNAERSTVSSSFWGRTLEPKMDSCSDAALPDSNGASKSKLSDSRSSLLSSINESPSPSLPEKSPKANVFSPKIVHPAVLGNTRDTEGVVLMESTNMDAPEVKNSSSLNCKSSSHAVNGTKSGSHVVKSGEVKSSVSLSSYGPPLSCVGRDSVCSNGLNISGGTSLRFEKSNIVTNDIGSSSNFVGMPSVPSVRSERFDNVQRSSAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYSDKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSPRAPRLIRNSIISHDGRNKILPSWVTGKSTMSRLRSPSLQSNVDQCHPGSNPPDGSASIETFYSRFHRLQRILEEDSSSDCSSLISSNSDDGSCSTESTRDSSSADDTSDFIFGGDPGCGWNSHWRTYSDSDTPSPSSSSMLYSRHSSLANSVPCVSSCPETSRIQVGNAQPSMECDGLRERISSRSNNRLANLEGTGSEPFLYSDTSKQCRKLTSSGSSCRETDSERLGRVSPFNDVKSSVVFRKPTKVSTD
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEEEEEEcccccccccccccEEEEcccccccccHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccEEEcccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEEcccccEEEEEcccEEEcccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccccccccHHccEEEEcccHHHHHHHHHcccHcccccccccccccccccccEEcccccccccccccEEcccccccccEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccccEccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccHccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHccccHHHHHHHHHHHHccHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccHcccHHHHHcccccccEEEEEEccccccccccccEEEEEccccHHHHHHHHHHHccHHHccccccccHHHHHcccccccEEEEEccccEEEEEEEEEcccccccEEEEEccccHcccccccccccccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEccccEEcccHHHHHHccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccEEEEEcccccccccccccccccEEEEccccccccccccEEEEEcccccccccccEccccccccc
MHVTGDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEAsygysttvyvpqhpqcavcfsptttrcarckavrycsgkcqivhwrqghkdecqppsisheindvgnftsqkaaepdqseaygdrfkfesklpakpiqmsseesessdrssssevpqrkddevevefhadgegasctyessdasfsgfsashtssessddvsVCESIIsnesekldgplsadITLDMLDNALnvkkleerkplspkfaKLVDSVDNFTKLnrfcetkpgcsgdlqctpanslglgashmnvnaerstvsssfwgrtlepkmdscsdaalpdsngasksklsDSRSSLLSsinespspslpekspkanvfspkivhpavlgntrdteGVVLMestnmdapevknssslnckssshavngtksgshvvksgevkssvslssygpplscvgrdsvcsnglnisggtslrfeksnivtndigsssnfvgmpsvpsvrserfdnvqrssamsaqienspsnvgnglkTSLWKAVDqfrgsksskqcLSVGCetagrysdkglfSYELFVKLYNwnkvelqpcglincgnscyANVVLQclaftppltayflqglhskecakkdwcftCELENLILrakdgksplspigILSRLQSIGsqlgngreeDAHEFLRYAIDTMQSVCIeeagvnasgpledettligltfggylrskikctkchgksERQERMMDLTVEIEGDIGNLEEALRRYTgteildgenkykcdrcksYEKAKKKLTIVEAPNILTIALKRfqsgkfgklnksiqfpeildlapymsgtsdklpiyrLYGVVVHLDIMNAAFSGHYVCYVKStqnkwfkvddstVTAVERERVLTEGAYMLLYArcspraprlirnsiishdgrnkilpswvtgkstmsrlrspslqsnvdqchpgsnppdgsasiETFYSRFHRLQRIleedsssdcsslissnsddgscstestrdsssaddtsdfifggdpgcgwnshwrtysdsdtpspssssmlysrhsslansvpcvsscpetsriqvgnaqpsmecdglrerissrsnnrlanlegtgsepflysdtskqcrkltssgsscretdserlgrvspfndvkssvvfrkptkvstd
mhvtgdlgFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEASYGYSTTVYVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISHEINDVGNFTSQKAAEPDQSEAYGDRFKFESKLpakpiqmsseesessdrssssevpqrkdDEVEVEFHADGEGASCTYESSDASFSGFSASHtssessddvSVCESIISnesekldgplsADITLDMLDNALNVKkleerkplspkfaklvdsvDNFTKLNRFCetkpgcsgdlQCTPANSLGLGASHMNVNAERSTVSSSFWGRTLEPKMDSCSDAALPDSNGASKSKLSDSRSSLLSSInespspslpekspkanvfspkivhpavlgntrdTEGVVLMESTnmdapevknssslnCKSSShavngtksgshVVKSGEVKSSVSLSSYGPPLSCVGRDSVCSNGLNIsggtslrfeksnivtndigsssnfvgMPSVPSVRSERFDNVQRSSAMsaqienspsnvgngLKTSLWKAVDQFrgsksskqclsVGCETagrysdkgLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAgvnasgpledETTLIGLTfggylrskikctkchgkserqermMDLTVEIEGDIGNLEEALRRYTgteildgenkykcdrCKSYEkakkkltiveapNILTIALKrfqsgkfgklnKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQnkwfkvddstvtAVERERVLTEGAYMLLYarcsprapRLIRNsiishdgrnkilpsWVTGKSTMSRLRSPSLQSNVDQCHPGSNPPDGSASIETFYSRFHRLQRILEEDSSSDCSSlissnsddgscstestrdsssaddtsDFIFGGDPGCGWNSHWRTYSDSDTPSPSSSSMLYSRHSSLANSVPCVSSCPETsriqvgnaqpsmecDGLRERISsrsnnrlanlegtgsepflysdtSKQCRKLtssgsscretdserlgrvspfndvkssvvfrkptkvstd
MHVTGDLGfsilvlvvsfvfPAIALIIRRKWRRAVARKEEIKRLLILaseeaaraefeasYGYSTTVYVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISHEINDVGNFTSQKAAEPDQSEAYGDRFKFESKLPAKPIQMsseesessdrsssseVPQRKDDEVEVEFHADGEGASCTYEssdasfsgfsashtssessddvsvcesiisNESEKLDGPLSADITLDMLDNALNVKKLEERKPLSPKFAKLVDSVDNFTKLNRFCETKPGCSGDLQCTPANSLGLGASHMNVNAERSTVSSSFWGRTLEPKMDSCSDAALPDSNGAsksklsdsrssllssinespspslpekspkANVFSPKIVHPAVLGNTRDTEGVVLMESTNMDAPEVknssslncksssHAVNGTksgshvvksgevkssvslssygPPLSCVGRDSVCSNGLNISGGTSLRFEKSNIVTNDIGSSSNFVGMPSVPSVRSERFDNVQRSSAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYSDKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSPRAPRLIRNSIISHDGRNKILPSWVTGKSTMSRLRSPSLQSNVDQCHPGSNPPDGSASIETFYSRFHRLQRILEEdsssdcsslissnsddgscstestrdsssaddtsdFIFGGDPGCGWNSHWrtysdsdtpspssssmlysrhsslANSVPCVSSCPETSRIQVGNAQPSMECDGLRERISSRSNNRLANLEGTGSEPFLYSDTSKQCRKLTSSGSSCRETDSERLGRVSPFNDVKSSVVFRKPTKVSTD
****GDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEASYGYSTTVYVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQG**************************************************************************************************************************************ITLDMLDNALNV***********KFAKLVDSVDNFTKLNRFCETKPGCSGDLQCTPA***********************************************************************************IVHPAVL*****************************************************************SCVGRDSVCSNGLNISGGTSLRFE**NIV**************************************************SLWKAVDQF******KQCLSVGCETAGRYSDKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGK*PLSPIGILSRLQSI***********AHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGK******MMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSPRAPRLIRNSIISHDGRNKILPSWVT***********************************FYSRFHRL*****************************************FIFGGDPGCGWNSHWRT******************************************************************************************************************************
**VTGDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILAS**********************HPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDE**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************WNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQS******************TLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYA****************************************************************************************************************************************************************************************************************************************************************
MHVTGDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEASYGYSTTVYVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISHEINDVGNFTSQKAAEPDQSEAYGDRFKFESKLPA*****************************EVEFHADGEGASCT***************************ESIISNESEKLDGPLSADITLDMLDNALNVKKLEERKPLSPKFAKLVDSVDNFTKLNRFCETKPGCSGDLQCTPANSLGLGASHMNVNAERSTVSSSFWGRTLEPKMDSCSDAALPD*********************************KANVFSPKIVHPAVLGNTRDTEGVVLMESTNMDAPEVKNSSSLNCKSSSHAVNGTKSGSHVVKSGEVKSSVSLSSYGPPLSCVGRDSVCSNGLNISGGTSLRFEKSNIVTNDIGSSSNFVGMPSVPSVRSERFDNVQRSSAMSAQIENSPSNVGNGLKTSLWKAVDQ***********SVGCETAGRYSDKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSPRAPRLIRNSIISHDGRNKILPSWVTGKSTMSRLRSPSLQSNVDQCHPGSNPPDGSASIETFYSRFHRLQRILE********************************DTSDFIFGGDPGCGWNSHWRTY**********************************SRIQVGNAQPSMECDGLRERISSRSNNRLANLEGTGSEPFLYS***********************LGRVSPFNDVKSSVVFRKPTKVSTD
***TGDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEASYGYSTTVYVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPS***********TSQKA*******AYGDRFKFESKLPAKPIQMSSEESES*DRSSSSEVPQRKDDEVEVEFHA*************************************************LSADITLDMLDNALNVKKLEERKPLSPKFAKLVDSVDNF**********************************************************************************************************************************************************************************************************************************************************************************************DKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCS*********************************************************************************************************DDTSDFIFGGDPGCGWNSHW******************************************************RERISSRSNNRLANLEGTGSEPFLYSDTSKQCRKLTSS***C****SERLGRVSPFN*****************
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MHVTGDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEASYGYSTTVYVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISHEINDVGNFTSQKAAEPDQSEAYGDRFKFESKLPAKPIQMSSEESESSDRSSSSEVPQRKDDEVEVEFHADGEGASCTYESSDASFSGFSASHTSSESSDDVSVCESIISNESEKLDGPLSADITLDMLDNALNVKKLEERKPLSPKFAKLVDSVDNFTKLNRFCETKPGCSGDLQCTPANSLGLGASHMNVNAERSTVSSSFWGRTLEPKMDSCSDAALPDSNGASKSKLSDSRSSLLSSINESPSPSLPEKSPKANVFSPKIVHPAVLGNTRDTEGVVLMESTNMDAPEVKNSSSLNCKSSSHAVNGTKSGSHVVKSGEVKSSVSLSSYGPPLSCVGRDSVCSNGLNISGGTSLRFEKSNIVTNDIGSSSNFVGMPSVPSVRSERFDNVQRSSAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYSDKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSPRAPRLIRNSIISHDGRNKILPSWVTGKSTMSRLRSPSLQSNVDQCHPGSNPPDGSASIETFYSRFHRLQRILEEDSSSDCSSLISSNSDDGSCSTESTRDSSSADDTSDFIFGGDPGCGWNSHWRTYSDSDTPSPSSSSMLYSRHSSLANSVPCVSSCPETSRIQVGNAQPSMECDGLRERISSRSNNRLANLEGTGSEPFLYSDTSKQCRKLTSSGSSCRETDSERLGRVSPFNDVKSSVVFRKPTKVSTD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1145 2.2.26 [Sep-21-2011]
Q9SB511008 Ubiquitin carboxyl-termin yes no 0.836 0.950 0.463 0.0
Q9FKP5731 Ubiquitin carboxyl-termin no no 0.311 0.488 0.645 1e-133
Q9SJA1672 Ubiquitin carboxyl-termin no no 0.290 0.495 0.571 1e-115
Q67XW5631 Ubiquitin carboxyl-termin no no 0.288 0.522 0.561 1e-114
Q9FPS9924 Ubiquitin carboxyl-termin no no 0.357 0.442 0.458 1e-107
D3ZU96 1325 Ubiquitin carboxyl-termin yes no 0.268 0.232 0.391 1e-66
B2RQC2 1324 Ubiquitin carboxyl-termin yes no 0.268 0.232 0.391 2e-66
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.268 0.231 0.388 2e-66
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.297 0.257 0.368 4e-66
Q9P275 1121 Ubiquitin carboxyl-termin no no 0.297 0.304 0.359 3e-63
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1 Back     alignment and function desciption
 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1080 (46%), Positives = 640/1080 (59%), Gaps = 122/1080 (11%)

Query: 1    MHVTGDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEAS 60
            M +  DLG S LVLVVS V P I L +R KWR A  R+EEI+RLLI ASEEAARAE EAS
Sbjct: 1    MLLVLDLGISSLVLVVSLVLPLIGLFVRHKWRVAAQRREEIRRLLIHASEEAARAELEAS 60

Query: 61   YGYSTTVYVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISHE 120
              +S+ V V     C VC+   TTRC+RCKAVRYCSGKCQI+HWRQGHKDEC P SI ++
Sbjct: 61   VEFSS-VAVSNVFHCPVCYCLATTRCSRCKAVRYCSGKCQIIHWRQGHKDECHPASIVYD 119

Query: 121  INDVGNFTSQKAAEPDQSEAYGDRFKFESKLPA-KPIQMSSEESESSDRSSSSE-----V 174
              D      +  ++    E  G     E+ L   +P+ +   ES  S+R+ S E     +
Sbjct: 120  SED------ESDSDLRLGEENGQNTPEETLLVGPEPVTIPIGESLLSNRARSPEDGNGDI 173

Query: 175  PQRKDDEVEVEFHADGEGASCTYESSDASFSGFSASHTSSESSDDVSVCESIISNESEKL 234
               KDD +      D E A    E+S +SFSG  +S   ++S D++S CES  S+ESE+ 
Sbjct: 174  ADNKDDLI------DKEEAVSVAETSGSSFSG-FSSSPRNDSGDEISRCESFSSSESERS 226

Query: 235  DGPLSADITLDMLDNALNVKKLEERKPLSPKFAKLVDSVDNFTKLNRFCETKPGCSGDLQ 294
            +  L A ++++  D   +  +    K LSPKF  LV+SVDN   L +    KP       
Sbjct: 227  ESLLDAHVSVEPEDTCFSTIEDAPSKLLSPKFVHLVESVDNLANLPKLSVHKPEDDAGQN 286

Query: 295  CTPANSL-GLGASHMNVNAERSTVSSSFWGRTL---EPKMDSC--SDAALP--------- 339
             + + SL  L      V+A+ S  SS FWG  L   E   DSC  S +  P         
Sbjct: 287  QSQSRSLHSLVTDRHPVSADPSLKSSDFWGTALGSAERVSDSCVKSKSGRPGNSSLHFSF 346

Query: 340  ---DSNGASKSKLSDSRSSLLSSINESPSPSLPEKSPKANVFSPKIVHPAVLGNTRDTEG 396
                S   S +K+S+ RSS+L    E+P                        G    ++G
Sbjct: 347  GSGSSRDTSAAKVSEQRSSIL---KEAPR-----------------------GTGYISDG 380

Query: 397  VVLME--STNMDAPEVKNSSSLNCKSSSHAVNGTKSG--SHVVKSGEVKSSVSLSSYGPP 452
            V L E  +   D  E+    +L   SS+ A++   S   SHV       +S    S   P
Sbjct: 381  VNLRERNAKRFDEAEI----ALPISSSTDALSPLDSSNLSHVTLPKSKSASSENGSMLAP 436

Query: 453  LSCVGRDSVCSNGLNISGGTSLRFEKSNIVTNDIGSSSNFVGMPSVPSVRSERFDNVQRS 512
            L       + S   N      L      +  + +G+ S  V             D+ +++
Sbjct: 437  LKVGEVQLLASKASNTKKCADL------MKHSPLGAKSVRV------------LDHQKQN 478

Query: 513  SAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYSDKGLFSYELF 572
             A+   I +      +GLK S+ K VDQ+   KS         E AGR+  KGLF YE+F
Sbjct: 479  GAVVQHINSLHGR--SGLKASVLKVVDQWTRPKSEN-------EMAGRHGHKGLFPYEVF 529

Query: 573  VKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTC 632
             KLY + K+E QPCGLIN GNSC+ANVV QCL FTPPLT YFLQ  HS+ C KK+ CFTC
Sbjct: 530  AKLYTY-KIEFQPCGLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHSRACTKKEQCFTC 588

Query: 633  ELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIE--E 690
              E L+++AK+ KSPLSP G+LS+LQ+IG  LGNG+EEDAHEFLR+ +DTMQSVCI+  E
Sbjct: 589  GFEKLVVKAKEEKSPLSPNGLLSQLQNIGIFLGNGKEEDAHEFLRFVVDTMQSVCIKASE 648

Query: 691  AGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEA 750
              +  S  LED TTLIGLTFGGYLRSKIKC KC  KSE +E+MMDLTVEI+GDI  L++A
Sbjct: 649  YDMTKSSKLED-TTLIGLTFGGYLRSKIKCMKCQVKSELREKMMDLTVEIDGDISTLDDA 707

Query: 751  LRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQ 810
            LRR+T TEILDGENKY+C  CKSYE+AKKKL I E PN+LTIALKRFQ+GKFGKLNK I+
Sbjct: 708  LRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQAGKFGKLNKLIR 767

Query: 811  FPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTV 870
            FPE LDLAPY+SG S+K   Y+LYGV+VHLD+MNAAFSGHYVCY+++ QNKW+K DDSTV
Sbjct: 768  FPETLDLAPYVSGGSEKSHDYKLYGVIVHLDVMNAAFSGHYVCYIRN-QNKWYKADDSTV 826

Query: 871  TAVERERVLTEGAYMLLYARCSPRAPRL-IRNSIISHDGRNKILPSWVTGKSTMSR---L 926
               + ER+LT+GAYML YARC+P  PRL +     + + ++++       KST+SR    
Sbjct: 827  VTSDVERILTKGAYMLFYARCTPTPPRLAVCTKTEASNKKSRVPLPKANEKSTISRSVST 886

Query: 927  RSPSLQSNVDQCHPGSNPPDGSASIETFYSRFHRLQRILEEDSSSDCSSLISSNSDDGSC 986
             SP L SN     PG      S +I++FYS F RLQ+ILEEDS+SD SSL  SNSD+ SC
Sbjct: 887  SSPELSSNT----PGGG---RSGNIQSFYSSFQRLQKILEEDSASDSSSLFDSNSDECSC 939

Query: 987  STESTRDSSSADDTSDFIFGGDPGCGWNSHWRTYSDSDTPSPSSSSMLYSRHSSLANSVP 1046
            ST    DS+S DD +DFIFG   G    +H ++ + S T S SSSS  ++R S L+ S P
Sbjct: 940  ST----DSTSMDDFADFIFGDHQG---RAHGQSETPSPTSSSSSSSPPFTRRSPLSRSSP 992
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q9FKP5|UBP17_ARATH Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2 Back     alignment and function description
>sp|Q67XW5|UBP18_ARATH Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2 Back     alignment and function description
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2 Back     alignment and function description
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1145
1477765211225 hypothetical protein VITISV_003549 [Viti 0.982 0.918 0.527 0.0
2254591111213 PREDICTED: ubiquitin carboxyl-terminal h 0.972 0.918 0.521 0.0
2240633131095 predicted protein [Populus trichocarpa] 0.890 0.931 0.524 0.0
3565184081125 PREDICTED: ubiquitin carboxyl-terminal h 0.875 0.890 0.533 0.0
3565100921063 PREDICTED: ubiquitin carboxyl-terminal h 0.876 0.944 0.538 0.0
3574652951116 Ubiquitin carboxyl-terminal hydrolase [M 0.862 0.884 0.525 0.0
3574899731050 Ubiquitin carboxyl-terminal hydrolase [M 0.787 0.859 0.491 0.0
4494614091113 PREDICTED: ubiquitin carboxyl-terminal h 0.859 0.884 0.480 0.0
4495114501115 PREDICTED: LOW QUALITY PROTEIN: ubiquiti 0.855 0.878 0.478 0.0
302142049841 unnamed protein product [Vitis vinifera] 0.593 0.807 0.570 0.0
>gi|147776521|emb|CAN74012.1| hypothetical protein VITISV_003549 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1075 bits (2779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1245 (52%), Positives = 793/1245 (63%), Gaps = 120/1245 (9%)

Query: 1    MHVTGDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEAS 60
            M V GDLGFS L L+ S  FP I L+IR KWR AVARKEEIKRLLILASEEAARAE E  
Sbjct: 1    MLVPGDLGFSCLALL-SLFFPVIGLVIRHKWRVAVARKEEIKRLLILASEEAARAELE-- 57

Query: 61   YGYSTTVYVPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISHE 120
               +  V V    QCAVC+ PTTTRCARCKAVRYCSGKCQI+HWRQGHK+EC PPSI+H+
Sbjct: 58   ---TAAVSVSPQFQCAVCYCPTTTRCARCKAVRYCSGKCQIIHWRQGHKEECNPPSITHQ 114

Query: 121  INDVGNFTSQKAAEPDQSEAYGDRFKFESKLPAKPIQMSSEESESSDRSSSSEVPQRKDD 180
            I D    +SQKA + ++   Y +R + E +   KPI+    E   S  + S EV   +DD
Sbjct: 115  IIDESISSSQKAVKQEKHAIYDNRLETEGQQCVKPIETFLSEPAFSKPNCSPEVSCEEDD 174

Query: 181  EVEVEFHADGEGASCTYESSDASFS-------------GFSASHTSSESSDDVSVCESII 227
             ++VEF ADG  +  T +SS  SFS               S S TSSE SDDVSV ESI 
Sbjct: 175  HIKVEFLADGNVSDSTSKSSSTSFSGFSTSTDRAEPSDNVSVSTTSSELSDDVSVSESIN 234

Query: 228  SNESEKLDGPLSADITLDMLDNALNVKKLEERKPLSPKFAKLVDSVDNFTKLNRFCETKP 287
            S + EK DG  S D  +    +++N  + E   P SP+F  LVDSV++FT  ++  + K 
Sbjct: 235  SYDPEKSDGHKSDDSAMPETISSINTHQNE---PFSPEFTGLVDSVNSFTGSSKLNQIKS 291

Query: 288  GCSG-DLQCTPANSLGLGAS-HMNVNAERSTVSSSFWGRTLE---PKMDSCSDAALPDSN 342
             CS  + QC  ++S     S +    A+ ST SS FW  TL+    +  +  D+A   ++
Sbjct: 292  SCSDVETQCRSSSSGLSIKSCNERSVAQPSTASSGFWEGTLDLNRTRNHAQDDSAQSYAS 351

Query: 343  GASKSKLSDSRSSLLSSINESPS--PSLPEKSPKANVFSPKIVHPAVL------------ 388
            GA  S +SDS S L  S N S S  P L  +  ++        HP+ L            
Sbjct: 352  GAD-SNISDSESVLRFSFNLSGSTIPPLHAEVSESKSTVLDDAHPSTLGIKKPIEGVASS 410

Query: 389  ------GNTRDTEGVVLMESTNMDAPEVKNSSSLNCKSSSHAVNGTKSGSHVVKSGEVKS 442
                  G  +  EGV   E  +  A + +NS SL  +SS+   +G  + SH +KS EVK 
Sbjct: 411  EKISTLGIKKPIEGVASSEKISTKALKFRNSPSLAFESSNLVDSGPSNDSHKLKSREVKP 470

Query: 443  SVSLSSYGPPLSCVGRDSVCSNG-----------------LNISGGTSLRFEKSNI---- 481
              S  S   P    G DS+  +                  +N   G S + +   +    
Sbjct: 471  FSSSVSNAHPSCSTGGDSISIDAPKARSSSSLSSERSNHVVNGKSGASHQLKSREVESLS 530

Query: 482  --------------------------VTNDIGSSSNFVGMPSVPSVRSERFDNVQRSSAM 515
                                      V +D+  SS+  G P VP+V+S + D V   +A 
Sbjct: 531  SGASDPHLSSSTEGHSVASMRSGKSTVDSDLHLSSSTRGHP-VPNVKSGKVDGVHTVAAS 589

Query: 516  SAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQC-LSVGCETAGRYSDKGLFSYELFVK 574
            S+QI N    V NGLKTS+ K VDQFR SK SK   L VG E AGR SDKGLFSYE+FVK
Sbjct: 590  SSQIANHSPIVSNGLKTSVRKVVDQFRPSKLSKSLPLGVGSEIAGRCSDKGLFSYEVFVK 649

Query: 575  LYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCEL 634
            LY WNKVEL+PCGL+NCGNSCYAN VLQCLAFTPPLT+YFLQGLHSK C KK+WCFTCE 
Sbjct: 650  LYIWNKVELRPCGLMNCGNSCYANAVLQCLAFTPPLTSYFLQGLHSKSCLKKEWCFTCEF 709

Query: 635  ENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVN 694
            E+LIL+AK+G SPLSP+GILS++++IGS LGNG+EEDAHEFLRYAID MQSVC++EAGVN
Sbjct: 710  ESLILKAKEGNSPLSPLGILSQIRNIGSHLGNGKEEDAHEFLRYAIDAMQSVCLKEAGVN 769

Query: 695  ASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRY 754
            ASG LE+ET+LIGLTFGGYLRSKIKC KCHGKSER ERMMDLTVEIEGDIG LEEAL ++
Sbjct: 770  ASGSLEEETSLIGLTFGGYLRSKIKCMKCHGKSERHERMMDLTVEIEGDIGTLEEALHKF 829

Query: 755  TGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEI 814
            T TEILDGENKY+C RCKSYEKAKKKLT+ EAPNILTIALKRFQSGKFGKLNKSI+FPEI
Sbjct: 830  TSTEILDGENKYQCSRCKSYEKAKKKLTVSEAPNILTIALKRFQSGKFGKLNKSIRFPEI 889

Query: 815  LDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVE 874
            LDLAP+MSGTSDK PIYRLY VVVHLDIMNAAFSGHYVCYVK+ QNKWFK+DDSTV  VE
Sbjct: 890  LDLAPFMSGTSDKSPIYRLYAVVVHLDIMNAAFSGHYVCYVKNIQNKWFKIDDSTVKPVE 949

Query: 875  RERVLTEGAYMLLYARCSPRAPRLIRNSIISHDGRNKILPSWVTGKSTMSRLRSPSLQSN 934
             ERVLT+GAYMLLYARCSPRAPRLIRN++I  + + +   S    K+T  +LR  S+ S 
Sbjct: 950  LERVLTKGAYMLLYARCSPRAPRLIRNAVIPRNRKLEAASSRNIVKNTTFKLRHDSIDST 1009

Query: 935  VDQ--------CHPGSNPPDGSASIETFYS---RFHRLQRILEEDSSSDCSSLISSNSDD 983
              Q         +   +P D  AS E+FYS   RF   QRI+E DSSSD SSL    +++
Sbjct: 1010 AGQSMIHSKPTAYHSRSPVDCPASFESFYSEETRFPWKQRIVEADSSSDNSSLF---TEE 1066

Query: 984  GSCSTESTRDSSSADDTSDFIFGGDPGCGWNSHWRTYSDSDTPSPSSSSMLYSRHSSLAN 1043
            GSCSTES RDS+S +D SD+IFG   G GW+S W   SDSDT    SSS    R S LA 
Sbjct: 1067 GSCSTESNRDSTSTEDLSDYIFGYS-GRGWSSPWTNSSDSDT----SSSSSSLRSSPLAE 1121

Query: 1044 SVPCVSSCPETSRIQVGNAQPSMECDGLRERISSRSNNRLANLEGTGSEPFLYSDTSKQC 1103
                 S   ETS  Q   A+  ME DG   R  + S ++L ++EG G  PFL SD +K C
Sbjct: 1122 LNRYSSCSTETSHSQTDKAKLVMEGDGFWARPPNGS-SKLVDMEGKGDIPFLLSDIAKPC 1180

Query: 1104 RKLTSSGSS---CRETDSERLGRVSPFNDVKSSVVFRKPTKVSTD 1145
            RKL S+ SS   C+ETD E++GRV+P + +K  V  R+ T+  TD
Sbjct: 1181 RKLVSNSSSDSYCKETDKEKVGRVNPLDSMKLGVPSRRSTRERTD 1225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459111|ref|XP_002283885.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224063313|ref|XP_002301091.1| predicted protein [Populus trichocarpa] gi|222842817|gb|EEE80364.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518408|ref|XP_003527871.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Glycine max] Back     alignment and taxonomy information
>gi|356510092|ref|XP_003523774.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Glycine max] Back     alignment and taxonomy information
>gi|357465295|ref|XP_003602929.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355491977|gb|AES73180.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357489973|ref|XP_003615274.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355516609|gb|AES98232.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449461409|ref|XP_004148434.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449511450|ref|XP_004163959.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 16-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|302142049|emb|CBI19252.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1145
TAIR|locus:21219591008 UBP16 "ubiquitin-specific prot 0.390 0.443 0.600 4.9e-181
TAIR|locus:2168282731 UBP17 "AT5G65450" [Arabidopsis 0.312 0.489 0.644 5.5e-149
TAIR|locus:2046678672 UBP19 "AT2G24640" [Arabidopsis 0.290 0.495 0.571 1.4e-116
TAIR|locus:2124809631 UBP18 "AT4G31670" [Arabidopsis 0.288 0.522 0.561 1.1e-114
DICTYBASE|DDB_G0274827 919 DDB_G0274827 "putative ubiquit 0.355 0.442 0.363 4.7e-63
ZFIN|ZDB-GENE-030131-5450 1104 usp36 "ubiquitin specific pept 0.374 0.388 0.330 5.4e-60
MGI|MGI:1924050 1324 Usp42 "ubiquitin specific pept 0.268 0.232 0.394 1.4e-58
RGD|1305231 1325 Usp42 "ubiquitin specific pept 0.268 0.232 0.394 1.4e-58
UNIPROTKB|E2RHU7 1331 USP42 "Ubiquitin carboxyl-term 0.268 0.231 0.391 1.4e-58
UNIPROTKB|E1B9W9 1333 USP42 "Ubiquitin carboxyl-term 0.268 0.231 0.391 1.4e-58
TAIR|locus:2121959 UBP16 "ubiquitin-specific protease 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1378 (490.1 bits), Expect = 4.9e-181, Sum P(3) = 4.9e-181
 Identities = 284/473 (60%), Positives = 346/473 (73%)

Query:   502 RSERFDNVQRSSAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRY 561
             +S R  + Q+ +    Q  NS     +GLK S+ K VDQ+   KS         E AGR+
Sbjct:   467 KSVRVLDHQKQNGAVVQHINSLHG-RSGLKASVLKVVDQWTRPKSEN-------EMAGRH 518

Query:   562 SDKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSK 621
               KGLF YE+F KLY + K+E QPCGLIN GNSC+ANVV QCL FTPPLT YFLQ  HS+
Sbjct:   519 GHKGLFPYEVFAKLYTY-KIEFQPCGLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHSR 577

Query:   622 ECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAID 681
              C KK+ CFTC  E L+++AK+ KSPLSP G+LS+LQ+IG  LGNG+EEDAHEFLR+ +D
Sbjct:   578 ACTKKEQCFTCGFEKLVVKAKEEKSPLSPNGLLSQLQNIGIFLGNGKEEDAHEFLRFVVD 637

Query:   682 TMQSVCIE--EAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVE 739
             TMQSVCI+  E  +  S  LED TTLIGLTFGGYLRSKIKC KC  KSE +E+MMDLTVE
Sbjct:   638 TMQSVCIKASEYDMTKSSKLED-TTLIGLTFGGYLRSKIKCMKCQVKSELREKMMDLTVE 696

Query:   740 IEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQS 799
             I+GDI  L++ALRR+T TEILDGENKY+C  CKSYE+AKKKL I E PN+LTIALKRFQ+
Sbjct:   697 IDGDISTLDDALRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQA 756

Query:   800 GKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQ 859
             GKFGKLNK I+FPE LDLAPY+SG S+K   Y+LYGV+VHLD+MNAAFSGHYVCY+++ Q
Sbjct:   757 GKFGKLNKLIRFPETLDLAPYVSGGSEKSHDYKLYGVIVHLDVMNAAFSGHYVCYIRN-Q 815

Query:   860 NKWFKVDDSTVTAVERERVLTEGAYMLLYARCSPRAPRL-IRNSIISHDGRNKI-LPSWV 917
             NKW+K DDSTV   + ER+LT+GAYML YARC+P  PRL +     + + ++++ LP   
Sbjct:   816 NKWYKADDSTVVTSDVERILTKGAYMLFYARCTPTPPRLAVCTKTEASNKKSRVPLPK-A 874

Query:   918 TGKSTMSR---LRSPSLQSNVDQCHPGSNPPDGSASIETFYSRFHRLQRILEE 967
               KST+SR     SP L SN     PG      S +I++FYS F RLQ+ILEE
Sbjct:   875 NEKSTISRSVSTSSPELSSNT----PGGGR---SGNIQSFYSSFQRLQKILEE 920
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008283 "cell proliferation" evidence=IGI
GO:0009908 "flower development" evidence=IGI
GO:0048364 "root development" evidence=IGI
GO:0048366 "leaf development" evidence=IGI
GO:0048367 "shoot system development" evidence=IGI
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
TAIR|locus:2168282 UBP17 "AT5G65450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046678 UBP19 "AT2G24640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124809 UBP18 "AT4G31670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274827 DDB_G0274827 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5450 usp36 "ubiquitin specific peptidase 36" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1924050 Usp42 "ubiquitin specific peptidase 42" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305231 Usp42 "ubiquitin specific peptidase 42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHU7 USP42 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9W9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SB51UBP16_ARATH3, ., 4, ., 1, 9, ., 1, 20.46380.83660.9503yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.921
3rd Layer3.4.19.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1145
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-127
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-70
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 3e-62
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 2e-57
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 6e-51
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 5e-48
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 9e-48
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 1e-45
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-35
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 2e-30
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 6e-30
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 9e-30
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 1e-27
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 8e-27
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 8e-25
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 2e-22
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 7e-22
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 5e-20
COG5207749 COG5207, UBP14, Isopeptidase T [Posttranslational 2e-13
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 6e-12
pfam0175339 pfam01753, zf-MYND, MYND finger 3e-10
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 2e-07
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 3e-07
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 6e-07
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 1e-04
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 3e-04
cd02670241 cd02670, Peptidase_C19N, A subfamily of Peptidase 4e-04
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  390 bits (1004), Expect = e-127
 Identities = 149/307 (48%), Positives = 191/307 (62%), Gaps = 5/307 (1%)

Query: 585 PCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDG 644
             GL N GN+C+ N VLQCL  TPPL  Y L   HSK+C  + +C  C LE  + RA   
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS 60

Query: 645 KSPLSPIGILSR-LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAG-VNASGPLEDE 702
             P S   I S  L+ I      GR+EDAHEFLRY +D MQ  C++    + A  P   E
Sbjct: 61  SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQE 120

Query: 703 TTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDG 762
           TTL+   FGGYLRS++KC  C   S   +  +DL+++I+G   +LE+AL ++T  E LDG
Sbjct: 121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA-DSLEDALEQFTKPEQLDG 179

Query: 763 ENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGKFGKLNKSIQFPEILDLAPYMS 822
           ENKYKC+RCK   KA K+LTI  APN+LTI LKRF + + GK+NK I FPE LDL+PYMS
Sbjct: 180 ENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239

Query: 823 GTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTEG 882
             +D    Y+LY V+VH        SGHY CYVKS+  KW+ +DDS V+ V  E VL++ 
Sbjct: 240 QPNDGPLKYKLYAVLVHSGFSP--HSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQK 297

Query: 883 AYMLLYA 889
           AY+L Y 
Sbjct: 298 AYILFYI 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1145
KOG1865545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.97
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.95
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.95
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.94
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 99.74
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.75
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 98.42
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.19
KOG2061362 consensus Uncharacterized MYND Zn-finger protein [ 97.49
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 96.93
KOG3612588 consensus PHD Zn-finger protein [General function 96.14
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 94.96
KOG3556724 consensus Familial cylindromatosis protein [Genera 94.7
PF08715320 Viral_protease: Papain like viral protease; InterP 94.29
PLN03158396 methionine aminopeptidase; Provisional 91.74
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 82.64
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 80.81
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 80.39
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-69  Score=624.14  Aligned_cols=322  Identities=48%  Similarity=0.881  Sum_probs=305.8

Q ss_pred             CCcCcchhhhhhhcccCCcccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHh
Q 001134          563 DKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAK  642 (1145)
Q Consensus       563 eksLf~~E~~lkl~~~~k~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~  642 (1145)
                      .+.||++|.+.  +.|.+....+.||.|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.++....
T Consensus        88 ~k~Lfp~e~~~--~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~  165 (545)
T KOG1865|consen   88 AKVLFPYEKLP--LSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL  165 (545)
T ss_pred             chhccccceec--ccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh
Confidence            48899998887  6788888999999999999999999999999999999999999999999999999999999998777


Q ss_pred             cCCC-CCCHHHHHHHHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEc
Q 001134          643 DGKS-PLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCT  721 (1145)
Q Consensus       643 s~k~-~isP~~fl~~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~  721 (1145)
                      .... ++.|..|+..|+.|...|+.|+|+||||||+++||.|+..|+  .+.....+..+++++|+++|||.++++++|.
T Consensus       166 ~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL--~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~  243 (545)
T KOG1865|consen  166 HNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL--PGHKQVDPRSQDTTLVHQIFGGYLRSQIKCL  243 (545)
T ss_pred             cCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc--CCCccCCcccccceehhhhhccchhhceecc
Confidence            6654 999999999999999999999999999999999999999998  3344456667889999999999999999999


Q ss_pred             CCCCeeeeeeeeeeeeeeeecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeeccccc
Q 001134          722 KCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSGK  801 (1145)
Q Consensus       722 ~C~~~S~~~E~f~~LsL~Ip~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~~  801 (1145)
                      .|.+++.++|++++|+|+|. ++.+|+++|++|++.|.|+|+|+|.|++|+++++|.|+++|.++|+||+||||||+.+.
T Consensus       244 ~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~  322 (545)
T KOG1865|consen  244 HCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGT  322 (545)
T ss_pred             cCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccCc
Confidence            99999999999999999999 78999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceEecCcccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcCCcceeecccccCCC
Q 001134          802 FGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKSTQNKWFKVDDSTVTAVERERVLTE  881 (1145)
Q Consensus       802 ~~KI~~~V~FPe~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~~gkWy~fNDs~Vt~Vs~eeVls~  881 (1145)
                      .+||++.|.||+.|||.|||..+...+..|.|+|||||.|.  ..++|||+||||...|+||.|||+.|+.++.+.|+++
T Consensus       323 ~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~--~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq  400 (545)
T KOG1865|consen  323 GGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGT--SCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQ  400 (545)
T ss_pred             ccccccccCCcccccccccccCCCCCCceEEEEEEEEeccc--cccCCceEEEEEcCCCceEEccCceeeeccccceecc
Confidence            99999999999999999999988888899999999999997  6999999999999999999999999999999999999


Q ss_pred             CcEEEEEEEe
Q 001134          882 GAYMLLYARC  891 (1145)
Q Consensus       882 ~AYILFYeR~  891 (1145)
                      +||||||.|.
T Consensus       401 ~AYmLfY~R~  410 (545)
T KOG1865|consen  401 QAYILFYARK  410 (545)
T ss_pred             cceEEEEEee
Confidence            9999999997

>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3612 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1145
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 2e-34
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 9e-34
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 9e-34
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 3e-26
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 3e-26
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 9e-26
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 1e-25
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 3e-25
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 4e-25
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 4e-24
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 5e-22
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 5e-22
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 5e-22
2f1z_A522 Crystal Structure Of Hausp Length = 522 1e-21
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 1e-20
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 3e-18
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 2e-11
2dan_A60 The Solution Structure Of The Mynd Domain (Leu384-C 5e-04
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 164/334 (49%), Gaps = 36/334 (10%)
Query: 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKK--DWCFTCELENLI------ 638
           GLIN GN+C+ + +LQCL   P    + +  +HS  C  +  D CF+C L+ ++      
Sbjct: 143 GLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202
Query: 639 LRAKDGKSPLSP-------IGILSRLQSIGSQLGNGREEDAHEFLRYAIDTM-QSVCIEE 690
           L  K   S  +        I +L+    I   L    ++DAHEF ++ I+ + QS  ++ 
Sbjct: 203 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDL 262
Query: 691 AGVNASGPLEDETT--LIGLTFGGYLRSKIKCTKCHGKSERQ-ERMMDLTVEIEGDIGNL 747
                     ++    ++   F G L S I C  C   S+   +  +DL+++I+ D   L
Sbjct: 263 PNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIK-DKKKL 321
Query: 748 EEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQ---SGKFGK 804
            E L  +   E L   N Y C  C S + A K+L I + P++L + LKRF+   +G   K
Sbjct: 322 YECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRK 380
Query: 805 LNKSIQFPEILDLAPYMS-------GTSDKLP--IYRLYGVVVHLDIMNAAFSGHYVCYV 855
           L+  I+FP  L++  Y S         + K+P  IY L G+V H   +N    GHY+ + 
Sbjct: 381 LDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVN---EGHYIAFC 437
Query: 856 KSTQNKWFKVDDSTVTAVERERVLTEGAYMLLYA 889
           K +  +WFK +DS V+++ +E VL E AY+L Y 
Sbjct: 438 KISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYT 471
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain (Leu384-Cys430) Of Human Zinc Finger Mynd Domain Containing Protein 10 Length = 60 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1145
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-109
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-105
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 2e-97
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 6e-95
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 7e-88
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 4e-85
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 6e-80
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 2e-70
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-30
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 4e-10
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 6e-29
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 7e-14
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 2e-13
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 3e-13
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 7e-13
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3qww_A433 SET and MYND domain-containing protein 2; methyltr 2e-05
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 1e-04
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
 Score =  344 bits (884), Expect = e-109
 Identities = 99/344 (28%), Positives = 150/344 (43%), Gaps = 36/344 (10%)

Query: 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC---AKKDWCFTCELENLI--LR 640
            GL N GN+C+ N +LQCL+ T  L  Y LQ L+ ++    +        E   LI  + 
Sbjct: 10  AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 69

Query: 641 AKDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVC------------- 687
                  +SP    +++Q    +     ++DA EFLR+ +D + +               
Sbjct: 70  TSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 129

Query: 688 ------IEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741
                  E+        LE E + IG  F G L+S + CT C   S   +   DL++ I 
Sbjct: 130 LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIA 189

Query: 742 GDI---GNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQ 798
                   L + +R +T  ++LDG+ K  C RC+  ++  KK +I   P IL + LKRF 
Sbjct: 190 KRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFS 249

Query: 799 --SGKFGKLNKSIQFP-EILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYV 855
               +  KL   + FP   LDL  + S  +    +Y LY V  H         GHY  Y 
Sbjct: 250 ESRIRTSKLTTFVNFPLRDLDLREFASE-NTNHAVYNLYAVSNHSGTTM---GGHYTAYC 305

Query: 856 KST-QNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSPRAPRL 898
           +S    +W   +DS+VT +   +V T  AY+L Y   SP   R+
Sbjct: 306 RSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP-PSRM 348
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1145
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.94
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 98.95
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 98.91
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 98.91
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 98.9
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 98.82
3qww_A433 SET and MYND domain-containing protein 2; methyltr 97.79
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 97.69
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.56
3mp2_A211 Non-structural protein 3; papain-like protease, TG 96.75
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 95.55
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 90.94
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 87.38
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 85.55
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.7e-59  Score=532.43  Aligned_cols=310  Identities=27%  Similarity=0.460  Sum_probs=268.6

Q ss_pred             ccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccc-----cccchHHHHHHHHHHHHhcC-CCCCCHHHHHH
Q 001134          582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA-----KKDWCFTCELENLILRAKDG-KSPLSPIGILS  655 (1145)
Q Consensus       582 el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~-----~~~~cll~qL~kLf~~l~s~-k~~isP~~fl~  655 (1145)
                      ..+++||.|+|||||||||||+|+++|+|+++|+...+.....     ....+++++|+.|+..|+.+ ...+.|..|+.
T Consensus         5 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~   84 (367)
T 2y6e_A            5 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKT   84 (367)
T ss_dssp             CTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHH
T ss_pred             CCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence            4578999999999999999999999999999998755433221     22457899999999999875 46899999999


Q ss_pred             HHHhhccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCC---C----------------CccccccccccceEEeE
Q 001134          656 RLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGP---L----------------EDETTLIGLTFGGYLRS  716 (1145)
Q Consensus       656 ~L~~i~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~---~----------------~~e~siI~~lF~G~l~s  716 (1145)
                      .++...+.|..++||||||||++|||.|++++...........   .                ....++|.++|+|++++
T Consensus        85 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s  164 (367)
T 2y6e_A           85 QVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKS  164 (367)
T ss_dssp             HHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEE
T ss_pred             HHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEee
Confidence            9999999999999999999999999999987643221110000   0                01357899999999999


Q ss_pred             EEEEcCCCCeeeeeeeeeeeeeeeecc------------------cccHHHHHHHhccccccCCCCccccCCCCCcceEE
Q 001134          717 KIKCTKCHGKSERQERMMDLTVEIEGD------------------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAK  778 (1145)
Q Consensus       717 ~ikC~~C~~~S~~~E~f~~LsL~Ip~~------------------~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~  778 (1145)
                      +++|..|++++.+.|+|++|+|+||..                  ..+|++||+.|+..|.++++|+|+|++|++++.+.
T Consensus       165 ~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~  244 (367)
T 2y6e_A          165 TLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQAT  244 (367)
T ss_dssp             EEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCE
T ss_pred             eEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEE
Confidence            999999999999999999999999743                  35899999999999999999999999999999999


Q ss_pred             EEEEEeeCCceEEEeeeeccccc--cccccceEecCc-ccCCCCccCCCCCCCCceEEEEEEEEeecCCCCCCceEEEEE
Q 001134          779 KKLTIVEAPNILTIALKRFQSGK--FGKLNKSIQFPE-ILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYV  855 (1145)
Q Consensus       779 K~~~I~~lP~VLiI~LkRF~~~~--~~KI~~~V~FPe-~LDLs~y~~~~s~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyV  855 (1145)
                      |+..|.++|+||+|||+||.++.  ..|+++.|.||. .|||.+|+.........|+|+|||+|.|   +..+|||+||+
T Consensus       245 K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G---~~~~GHY~a~~  321 (367)
T 2y6e_A          245 KKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYG---AMGVGHYTAYA  321 (367)
T ss_dssp             EEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEEC---SSSSCEEEEEE
T ss_pred             EEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCC---CCCCCeeeEEE
Confidence            99999999999999999998754  379999999996 7999999987666678999999999999   47899999999


Q ss_pred             EcC-CCcEEEEcCCcceeecccccCCCCcEEEEEEEeCCC
Q 001134          856 KST-QNKWFKVDDSTVTAVERERVLTEGAYMLLYARCSPR  894 (1145)
Q Consensus       856 R~~-~gkWy~fNDs~Vt~Vs~eeVls~~AYILFYeR~s~~  894 (1145)
                      |+. +++||+|||+.|+++++++|+...||||||+|++..
T Consensus       322 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~  361 (367)
T 2y6e_A          322 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE  361 (367)
T ss_dssp             ECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-
T ss_pred             EcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCC
Confidence            986 689999999999999999999999999999998743
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1145
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 4e-58
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 3e-55
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-47
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-41
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-33
d2dana147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 6e-13
d2jw6a138 g.85.1.1 (A:503-540) Zinc finger MYND domain-conta 2e-11
d2dj8a147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 6e-11
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  202 bits (513), Expect = 4e-58
 Identities = 83/335 (24%), Positives = 136/335 (40%), Gaps = 33/335 (9%)

Query: 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDW-----CFTCELENLILR 640
            GL N GN+CY N +LQCL   P L  YF +  +  +  + +          E   ++  
Sbjct: 16  TGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKA 75

Query: 641 AKDGK-SPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPL 699
              G+   +SP      +  I  Q     ++D+ E L + +D +     +          
Sbjct: 76  LWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEE 135

Query: 700 ED-------------------ETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEI 740
            +                     ++I   F G  +S ++C  CH KS   E  M L++ +
Sbjct: 136 NNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPL 195

Query: 741 -EGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQ- 798
                  L++ LR ++  E L   N++ C  C++   + KK+ I + P +L + LKRF  
Sbjct: 196 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 255

Query: 799 --SGKFGKLNKSIQFPEILDLAPYMSGTSDKLPIYRLYGVVVHLDIMNAAFSGHYVCYVK 856
               K           E LDL+ Y+ G  + L  Y L+ V  H   ++    GHY  Y K
Sbjct: 256 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLD---GGHYTAYCK 312

Query: 857 STQ-NKWFKVDDSTVTAVERERVLTEGAYMLLYAR 890
           +    +WFK DD  V+ +    V +  AY+L Y  
Sbjct: 313 NAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1145
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 99.17
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 99.11
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 99.09
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-52  Score=467.45  Aligned_cols=293  Identities=28%  Similarity=0.434  Sum_probs=252.6

Q ss_pred             cccCccccccCCCccchHHHHHHHhCChhHHHHHhhcccccccccccchHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001134          581 VELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSI  660 (1145)
Q Consensus       581 ~el~p~GL~NlGNTCYmNSVLQ~L~~iP~Fr~~LL~~~~~~~~~~~~~cll~qL~kLf~~l~s~k~~isP~~fl~~L~~i  660 (1145)
                      .++|++||.|+||||||||+||+|+++|+|+++++......  .....++.++|+.||..|+....++.|..++..+.  
T Consensus         2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~~~~~~~~~~~~~~--   77 (347)
T d1nbfa_           2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--   77 (347)
T ss_dssp             CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT--CCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHTT--
T ss_pred             CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC--CcccchHHHHHHHHHHHHhcCCCCcChHHHHHhhc--
Confidence            36789999999999999999999999999999987654332  23456789999999999998888899988887763  


Q ss_pred             ccccCCCccccHHHHHHHHHHhhhhhhhhhhcCCCCCCCCccccccccccceEEeEEEEEcCCCCeeeeeeeeeeeeeee
Q 001134          661 GSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEI  740 (1145)
Q Consensus       661 ~~~F~~g~QQDA~EFL~~LLD~L~~e~lk~~~~~~~~~~~~e~siI~~lF~G~l~s~ikC~~C~~~S~~~E~f~~LsL~I  740 (1145)
                      ...|..+.||||+|||.+||+.|++++...          ...++|.++|+|++...++|..|+..+.+.++|+.|+|++
T Consensus        78 ~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i  147 (347)
T d1nbfa_          78 WETLDSFMQHDVQELCRVLLDNVENKMKGT----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI  147 (347)
T ss_dssp             CCGGGGGSCBCHHHHHHHHHHHHHHHHTTS----------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEEC
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHhhc----------cccccccceeceEEEEeEEeCCccceeeeecccccccccc
Confidence            456788899999999999999999866322          2345799999999999999999999999999999999999


Q ss_pred             ecccccHHHHHHHhccccccCCCCccccCCCCCcceEEEEEEEeeCCceEEEeeeecccc----ccccccceEecCcccC
Q 001134          741 EGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQSG----KFGKLNKSIQFPEILD  816 (1145)
Q Consensus       741 p~~~~SLed~L~~f~~~E~Ldgdn~y~C~kCk~~~~A~K~~~I~~lP~VLiI~LkRF~~~----~~~KI~~~V~FPe~LD  816 (1145)
                      +. ..++.++|..++..|.+++++++.|..| +...+.|+..|.++|+||+|||+||.+.    ...|++..|.||+.||
T Consensus       148 ~~-~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ld  225 (347)
T d1nbfa_         148 KG-KKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP  225 (347)
T ss_dssp             TT-CCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEE
T ss_pred             cc-ccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeec
Confidence            85 4789999999999999999887777655 5678999999999999999999999753    3469999999999999


Q ss_pred             CCCccCCCC-CCCCceEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeecccccCC--------------
Q 001134          817 LAPYMSGTS-DKLPIYRLYGVVVHLDIMNAAFSGHYVCYVKST-QNKWFKVDDSTVTAVERERVLT--------------  880 (1145)
Q Consensus       817 Ls~y~~~~s-~~s~~YeL~gVIvH~Gt~nsa~sGHYVAyVR~~-~gkWy~fNDs~Vt~Vs~eeVls--------------  880 (1145)
                      |.+|+.... .....|+|+|||+|.|.   +.+|||+||+|+. +++||+|||+.|+++++++|+.              
T Consensus       226 l~~~~~~~~~~~~~~Y~L~~vI~H~G~---~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~  302 (347)
T d1nbfa_         226 LDEFLQKTDPKDPANYILHAVLVHSGD---NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRH  302 (347)
T ss_dssp             CGGGBSSCCTTSCCEEEEEEEEEEEEE---TTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTT
T ss_pred             cccccccccccCccceeeEEEEEecCC---CCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCC
Confidence            999987543 33468999999999994   5799999999975 6799999999999999999974              


Q ss_pred             -CCcEEEEEEEeC
Q 001134          881 -EGAYMLLYARCS  892 (1145)
Q Consensus       881 -~~AYILFYeR~s  892 (1145)
                       .+||||||+|.+
T Consensus       303 ~~~aYiLfY~r~~  315 (347)
T d1nbfa_         303 CTNAYMLVYIRES  315 (347)
T ss_dssp             TEEEEEEEEEEGG
T ss_pred             CCCEEEEEEEecC
Confidence             259999999986
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure