Citrus Sinensis ID: 001139

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140---

MTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL

ccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccccHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccHHHHHcccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccccccEEEEEccEEEEcccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccEEEEccccccHHHHHHHHHHccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcccccccEEEEEcHHHHHccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHcccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHcccccccc

ccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHcHcHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccHHcHHccccccEEccccccccccccccccccEEEEEccccEEEEEccccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccHHHHccccEEEEEEEEEccccccEEEEccccccHHHHHHHHHHHccccccccccHHHccccHHHcccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccEEEEccccEEEEEEcHHHHHHccccccccccccEccHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHcccccHHHHHHccccccccccccccccccHHccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccHHHHHHHcccccccc

MTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYksltlgspdfshletlPRHIEILVSAVtqinepdslyGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMlqmdgnsgalsphglpsvhlspstsenemmqrkpykgLMRSLQQVGCMHVLDMYCKGltswkgqfqhdpeftKLQYEAAWRtgnwdfslpylganfpsgqniksghfhENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGvawdirwkssgesiniypekqkivsepviptvgqlswlNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKflytgpgdqcstvyWLGRLEEAKLLRAQGQHEMAINLAKYISenyesneeapDVYRLVGKWLAesrssnsriilenylkpavsfsedqrttdkkSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKsstkgektdYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIdevqsykfIPLVYQIASRMgstkdalgLHNFQFALVSLVKKMAIDHPYHTIFQLLALAngdrikdkqrsrnsfvvDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLrqlelvpvvtatvpidctcqynegsfpyfKGLAESVMVMnginapkvvecfgsdghkyRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDtwkrrlgvrtykvvpftpsagilewvdgtvplgdyligstrnggahgrygigdwsfLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAfeqglmlktpervpfrltrdiidgmgvtgvEGVFRRCCEKTLSVMRTNKEALLTIVEVFIhdplykwalspLKALQRQKEMDddletglegpedeyegnkDAERALIRVKQKldgyeggemrsvHGQVQQLIQDAidperfclmfpgwgawl

MTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYpekqkivsepviPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAEsrssnsriilenylkpavsfsedqRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKrlksstkgektdysiKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAeletrredtnkriqlpreirclrqlelVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFlrnhrdtwkrrlgvrtykvvpftpsagilewVDGTVPLGDYLIGstrnggahgrYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFeqglmlktpervpfRLTRDIIDgmgvtgvegVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETglegpedeyegnkdaeRALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL

MTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKlaaenlleelSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL

****WDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVML************************************LMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESR**NSRIILENYLKPAV***************RQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKR********************************LLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRI********SFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAK***DDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLK******************************************Y******SVHGQVQQLIQDAIDPERFCLMFPGWGAW*

*TTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCE******************LPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVML********LSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTS*****QHDPEFTKLQYEAAWRTGNWDFSLPYLGAN******IKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSG*****YPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELK**********STVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSF**********SIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALAN***************VDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRRED************CLRQLELVPV************YNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAH*RYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW*****************************EG*KDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL

MTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVS*************ERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLK********DYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL

*TTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSL*********LETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQ*I*SGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKS************KIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKAL*********************EGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGExxxxxxxxxxxxxxxxxxxxxxxxxxxxRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1143	2.2.26 [Sep-21-2011]
Q9M3G7		3856	Serine/threonine-protein	yes	no	1.0	0.296	0.730	0.0
Q13315		3056	Serine-protein kinase ATM	yes	no	0.923	0.345	0.357	0.0
Q62388		3066	Serine-protein kinase ATM	yes	no	0.928	0.346	0.358	0.0
Q6PQD5		3057	Serine-protein kinase ATM	yes	no	0.923	0.345	0.354	0.0
Q4WVM7		2796	Serine/threonine-protein	yes	no	0.608	0.248	0.355	1e-121
Q4IB89		2813	Serine/threonine-protein	yes	no	0.895	0.364	0.290	1e-119
Q2U639		2925	Serine/threonine-protein	yes	no	0.570	0.222	0.354	1e-114
O74630		2812	Serine/threonine-protein	yes	no	0.578	0.235	0.333	1e-113
Q5EAK6		2767	Serine/threonine-protein	yes	no	0.613	0.253	0.331	1e-112
Q5BHE2		2793	Serine/threonine-protein	yes	no	0.615	0.252	0.335	1e-112

>sp\|Q9M3G7\|ATM_ARATH Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1	Back alignment and function desciption

 Score = 1763 bits (4565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 837/1146 (73%), Positives = 979/1146 (85%), Gaps = 3/1146 (0%)

Query: 1    MTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLP 60
            +TT+W+KVYWLS+DYL VA SAV+CG+Y T+ MYVE+WCEE + +L+LG PDFS+ + LP
Sbjct: 2711 ITTNWEKVYWLSIDYLVVAGSAVVCGAYLTASMYVEYWCEEKFGNLSLGDPDFSYHDKLP 2770

Query: 61   RHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQM 120
             H+EILVSA+T+INEPDSLYG+I S+KLS+QI+T EHEGNW++ALEYY+LQ RS  M+  
Sbjct: 2771 DHVEILVSAITRINEPDSLYGVIHSNKLSAQIITFEHEGNWTRALEYYDLQARSQKMVVP 2830

Query: 121  DGNSGALSPHGL-PSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWK 179
               S  L      P+     S      +QR+P+KGL+RSLQQ GCMHVLD+YC+GLTS +
Sbjct: 2831 SSLSENLEVEQFQPTTSARHSVFGEGEVQRQPFKGLIRSLQQTGCMHVLDLYCRGLTSRE 2890

Query: 180  GQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGD 239
            G FQ+DPEF +LQYEAAWR G WDFSL Y   +    Q+ K+ ++HE+LH CL AL+EGD
Sbjct: 2891 GCFQYDPEFIELQYEAAWRAGKWDFSLLYPQTHCQPLQHAKNNNYHESLHCCLRALQEGD 2950

Query: 240  SEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWK-SSGESIN 298
             + FY KLK +K+ELVLS++ ASEESTE+IYS +VKLQIL HLG+ WD+RW  SS +S++
Sbjct: 2951 YDGFYGKLKDTKKELVLSISRASEESTEFIYSTVVKLQILHHLGLVWDLRWTTSSHQSVH 3010

Query: 299  IYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDF 358
             Y  KQ    +PVIPT+ QLSWLN +W+SI+ +TQLHM LLEPF+AFRRVLLQIL C+  
Sbjct: 3011 GYLVKQMACVDPVIPTMDQLSWLNKDWNSIITQTQLHMTLLEPFIAFRRVLLQILGCEKC 3070

Query: 359  TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQH 418
            TMQHLL+SAS LRKG R S AAA+LHE KFL      Q     WLG+LEEAKLL AQG+H
Sbjct: 3071 TMQHLLQSASLLRKGTRFSHAAASLHEFKFLCARSNGQQPVPDWLGKLEEAKLLHAQGRH 3130

Query: 419  EMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRT- 477
            E++I+LA YI  NY+  EEA D+YR++GKWLAE+RSSNSR ILE YL+PAVS +E+Q + 
Sbjct: 3131 EVSISLANYILHNYQLKEEASDIYRVIGKWLAETRSSNSRTILEKYLRPAVSLAEEQSSK 3190

Query: 478  TDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSS 537
              K+ ++RQ QT FHLAHYADALFKSYEERL+S+EWQAA+RLRKHKT ELE  IKR KSS
Sbjct: 3191 ICKRLVDRQSQTWFHLAHYADALFKSYEERLSSSEWQAALRLRKHKTKELEVFIKRFKSS 3250

Query: 538  TKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVF 597
             K E++DYS+KIQ+LQKQL MD+EEA+KL  DRDNFL LALEGYKRCL IGDKYDVRVVF
Sbjct: 3251 KKAEQSDYSLKIQDLQKQLTMDKEEAEKLQVDRDNFLKLALEGYKRCLEIGDKYDVRVVF 3310

Query: 598  RLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVS 657
            R VS+WFSL+S++NVI NM+ TI EVQSYKFIPLVYQIASR+GS+KD  G ++FQ ALVS
Sbjct: 3311 RQVSMWFSLASQKNVIDNMLSTIKEVQSYKFIPLVYQIASRLGSSKDESGSNSFQSALVS 3370

Query: 658  LVKKMAIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAI 717
            L++KMAIDHPYHTI QLLALANGDRIKD QRSRNSFVVDMDKKLAAE+LL+++S YHG +
Sbjct: 3371 LIRKMAIDHPYHTILQLLALANGDRIKDNQRSRNSFVVDMDKKLAAEHLLQDVSHYHGPM 3430

Query: 718  IRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNE 777
            IRQMKQ+VD+YIKLAELETRREDTN+++ LPREIR ++QLELVPVVTAT+P+D +CQYNE
Sbjct: 3431 IRQMKQLVDIYIKLAELETRREDTNRKVALPREIRSVKQLELVPVVTATIPVDRSCQYNE 3490

Query: 778  GSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVN 837
            GSFP+F+GL++SV VMNGINAPKVVECFGSDG KY+QLAKSGNDDLRQDAVMEQFFGLVN
Sbjct: 3491 GSFPFFRGLSDSVTVMNGINAPKVVECFGSDGQKYKQLAKSGNDDLRQDAVMEQFFGLVN 3550

Query: 838  TFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIG 897
            TFL N+RDTWKRRL VRTYKV+PFTPSAG+LEWVDGT+PLGDYLIGS+R+ GAHGRYGIG
Sbjct: 3551 TFLHNNRDTWKRRLAVRTYKVIPFTPSAGVLEWVDGTIPLGDYLIGSSRSEGAHGRYGIG 3610

Query: 898  DWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAAS 957
            +W + KCREHMS+ KDKR AF +VC NFRPV+HYFFLE+FLQPA WF KRLAYTRSVAAS
Sbjct: 3611 NWKYPKCREHMSSAKDKRKAFVDVCTNFRPVMHYFFLEKFLQPADWFVKRLAYTRSVAAS 3670

Query: 958  SMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1017
            SMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG
Sbjct: 3671 SMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 3730

Query: 1018 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLE 1077
            +TGVEGVFRRCCE+TLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKE +D   
Sbjct: 3731 ITGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETEDYDG 3790

Query: 1078 TGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFP 1137
              LEG ++E+EGNKDA RAL+RVKQKLDGYEGGEMRS+HGQ QQLIQDAID +R   MFP
Sbjct: 3791 MNLEGLQEEFEGNKDATRALMRVKQKLDGYEGGEMRSIHGQAQQLIQDAIDTDRLSHMFP 3850

Query: 1138 GWGAWL 1143
            GWGAW+
Sbjct: 3851 GWGAWM 3856

Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR) or DNA replication stalling. Plays a central role in the perception and response to both stress-induced damage in somatic cells and developmentally programmed DNA damage during meiosis. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates histone variant H2AX to form H2AXS139ph at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Involved in transcriptional regulation of RAD51, PARP1, GR1, and LIG4 in response to DNA double strand breaks. Plays a dual role by activating the DNA damage response at dysfunctional telomeres and yet preventing this activation at functional telomeres. Not required for telomere length homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp\|Q13315\|ATM_HUMAN Serine-protein kinase ATM OS=Homo sapiens GN=ATM PE=1 SV=3	Back alignment and function description

>sp\|Q62388\|ATM_MOUSE Serine-protein kinase ATM OS=Mus musculus GN=Atm PE=1 SV=2	Back alignment and function description

>sp\|Q6PQD5\|ATM_PIG Serine-protein kinase ATM OS=Sus scrofa GN=ATM PE=3 SV=2	Back alignment and function description

>sp\|Q4WVM7\|ATM_ASPFU Serine/threonine-protein kinase tel1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tel1 PE=3 SV=2	Back alignment and function description

>sp\|Q4IB89\|ATM_GIBZE Serine/threonine-protein kinase TEL1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=TEL1 PE=3 SV=1	Back alignment and function description

>sp\|Q2U639\|ATM_ASPOR Serine/threonine-protein kinase tel1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=tel1 PE=3 SV=1	Back alignment and function description

>sp\|O74630\|ATM_SCHPO Serine/threonine-protein kinase tel1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tel1 PE=1 SV=1	Back alignment and function description

>sp\|Q5EAK6\|ATM_DROME Serine/threonine-protein kinase ATM OS=Drosophila melanogaster GN=tefu PE=2 SV=1	Back alignment and function description

>sp\|Q5BHE2\|ATM_EMENI Serine/threonine-protein kinase tel1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tel1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1143
359491245		2956	PREDICTED: serine/threonine-protein kina	0.999	0.386	0.819	0.0
297733786		3085	unnamed protein product [Vitis vinifera]	0.998	0.369	0.817	0.0
255540663		2954	ataxia telangiectasia mutated, putative	0.999	0.386	0.791	0.0
356507238		3439	PREDICTED: serine/threonine-protein kina	0.998	0.331	0.785	0.0
449441017		2985	PREDICTED: LOW QUALITY PROTEIN: serine/t	0.997	0.381	0.771	0.0
56748564		3856	RecName: Full=Serine/threonine-protein k	1.0	0.296	0.730	0.0
7529272		3856	ataxia-telangiectasia mutated protein (A	1.0	0.296	0.729	0.0
240255538		3845	serine/threonine-protein kinase [Arabido	0.990	0.294	0.725	0.0
297815998		3832	hypothetical protein ARALYDRAFT_323420 [	0.988	0.294	0.718	0.0
222617585		2743	hypothetical protein OsJ_00056 [Oryza sa	0.993	0.413	0.671	0.0

>gi\|359491245\|ref\|XP_002279402.2\| PREDICTED: serine/threonine-protein kinase ATM [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1950 bits (5052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 937/1144 (81%), Positives = 1025/1144 (89%), Gaps = 2/1144 (0%)

Query: 2    TTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPR 61
            T+ W+KVYWLS+DYL VAKSA+ICGSYFTSVMYVEHWCEEH+ SLTLG PDFSH E LP 
Sbjct: 1813 TSLWEKVYWLSIDYLDVAKSAIICGSYFTSVMYVEHWCEEHFNSLTLGKPDFSHCEMLPH 1872

Query: 62   HIEILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMD 121
            HIEILVSA+TQINEPDSLYGIIQ HKL+SQI+T EHEGNWSKALEYY+LQVRS+ +  MD
Sbjct: 1873 HIEILVSAITQINEPDSLYGIIQLHKLTSQIITFEHEGNWSKALEYYDLQVRSEPVAGMD 1932

Query: 122  GNSGALSP-HGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKG 180
            G+S  LSP H   +VH S S SE+ + QR+PYKGL+RSLQ++GC HVLD+YC+GLTS  G
Sbjct: 1933 GSSRNLSPEHSQLTVHPSFSKSEDVIRQREPYKGLIRSLQKIGCTHVLDLYCQGLTSQNG 1992

Query: 181  QFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSG-QNIKSGHFHENLHSCLTALREGD 239
            QFQHD EFT+LQYEAAWR GNWDFSL Y+GAN PS  Q+I+  HF+ENLHSCL A +EGD
Sbjct: 1993 QFQHDLEFTELQYEAAWRAGNWDFSLLYMGANSPSSSQHIRCDHFNENLHSCLRAFQEGD 2052

Query: 240  SEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINI 299
              EF+ KLK SKQELVLSV  AS +STEYIYS I+KLQI  HLG+AW +RW    E I  
Sbjct: 2053 FNEFHSKLKDSKQELVLSVCHASGQSTEYIYSTIIKLQIFYHLGMAWGLRWAPPSEKIET 2112

Query: 300  YPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFT 359
             P  QK+ SEP+IPT+ QLSWLNT+WSSILKRTQLHMNLLEPF+AFRRVLLQILS KD  
Sbjct: 2113 SPGMQKVFSEPIIPTMDQLSWLNTDWSSILKRTQLHMNLLEPFIAFRRVLLQILSSKDCM 2172

Query: 360  MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHE 419
            +QHLL+S+STLRKG R SQAAAALHE KFL    G+Q S  YWLGRLEEAKLLRAQGQHE
Sbjct: 2173 VQHLLQSSSTLRKGSRFSQAAAALHEFKFLCNRMGEQHSASYWLGRLEEAKLLRAQGQHE 2232

Query: 420  MAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTD 479
            MAINLAKYIS+N + NEEA +VYRLVGKWLAE+RSSNSR ILE YLK AV  ++D + TD
Sbjct: 2233 MAINLAKYISQNSQLNEEASNVYRLVGKWLAETRSSNSRTILEKYLKRAVLLAKDNKNTD 2292

Query: 480  KKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTK 539
            KK+IERQ QTHFHLAHYADALF+S+EERLASNEWQAA RLRKHKTIELEALIKRL+SS+K
Sbjct: 2293 KKTIERQSQTHFHLAHYADALFRSHEERLASNEWQAATRLRKHKTIELEALIKRLRSSSK 2352

Query: 540  GEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRL 599
            GEKTDYS+KIQELQKQLAMD EEA+KL DDRDNFL L LEGYKRCLV+GDKYDVRVVFRL
Sbjct: 2353 GEKTDYSVKIQELQKQLAMDAEEAEKLQDDRDNFLSLTLEGYKRCLVLGDKYDVRVVFRL 2412

Query: 600  VSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLV 659
            VSLWFSLSSRQNVI  M+ T+ EVQSYKFIPLVYQIASRMGS+KD LG H+FQFALVSLV
Sbjct: 2413 VSLWFSLSSRQNVINMMLSTVQEVQSYKFIPLVYQIASRMGSSKDGLGPHSFQFALVSLV 2472

Query: 660  KKMAIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIR 719
            KKM+IDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLL+ELSS HG+II+
Sbjct: 2473 KKMSIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLKELSSCHGSIIQ 2532

Query: 720  QMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGS 779
            QMKQMV++YIKLAELET+REDTNKR+ LPREIR LRQLELVPVVT+T P+D  CQY+EGS
Sbjct: 2533 QMKQMVEIYIKLAELETKREDTNKRVMLPREIRSLRQLELVPVVTSTFPVDRNCQYHEGS 2592

Query: 780  FPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 839
            FP+FKGL +SVM+MNGINAPKVVEC GSDG KYRQLAKSGNDDLRQDAVMEQFF LVNTF
Sbjct: 2593 FPHFKGLGDSVMIMNGINAPKVVECLGSDGQKYRQLAKSGNDDLRQDAVMEQFFSLVNTF 2652

Query: 840  LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDW 899
            L NHRDTWKRRL VRTYKVVPFTPSAG+LEWV+GT+PLG+YLIGSTRNGGAHGRYG+ DW
Sbjct: 2653 LENHRDTWKRRLRVRTYKVVPFTPSAGVLEWVNGTLPLGEYLIGSTRNGGAHGRYGMEDW 2712

Query: 900  SFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSM 959
            SF KCREHM+N KDKR AFQEVC+NFRPV+H FFLERFLQPA WFEKRLAYTRSVAASSM
Sbjct: 2713 SFSKCREHMTNEKDKRKAFQEVCKNFRPVMHNFFLERFLQPADWFEKRLAYTRSVAASSM 2772

Query: 960  VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT 1019
            VGYIVGLGDRH+MNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT
Sbjct: 2773 VGYIVGLGDRHSMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT 2832

Query: 1020 GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETG 1079
            GVEGVFRRCCE+TLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKE DDDLET 
Sbjct: 2833 GVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLETS 2892

Query: 1080 LEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGW 1139
            LE  E+EYEGNKDA RAL+RVKQKLDGYE GEMRSVHGQV+QLIQDAIDP+RFC MFPGW
Sbjct: 2893 LEDLEEEYEGNKDAARALLRVKQKLDGYEEGEMRSVHGQVRQLIQDAIDPDRFCRMFPGW 2952

Query: 1140 GAWL 1143
            GAWL
Sbjct: 2953 GAWL 2956

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297733786\|emb\|CBI15033.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255540663\|ref\|XP_002511396.1\| ataxia telangiectasia mutated, putative [Ricinus communis] gi\|223550511\|gb\|EEF51998.1\| ataxia telangiectasia mutated, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356507238\|ref\|XP_003522376.1\| PREDICTED: serine/threonine-protein kinase ATM-like [Glycine max]	Back alignment and taxonomy information

>gi\|449441017\|ref\|XP_004138280.1\| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase ATM-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|56748564\|sp\|Q9M3G7.1\|ATM_ARATH RecName: Full=Serine/threonine-protein kinase ATM; AltName: Full=Ataxia telangiectasia mutated homolog; Short=AtATM gi\|7960715\|emb\|CAB92122.1\| AtATM [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|7529272\|emb\|CAB86487.1\| ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|240255538\|ref\|NP_190402.6\| serine/threonine-protein kinase [Arabidopsis thaliana] gi\|332644858\|gb\|AEE78379.1\| serine/threonine-protein kinase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297815998\|ref\|XP_002875882.1\| hypothetical protein ARALYDRAFT_323420 [Arabidopsis lyrata subsp. lyrata] gi\|297321720\|gb\|EFH52141.1\| hypothetical protein ARALYDRAFT_323420 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|222617585\|gb\|EEE53717.1\| hypothetical protein OsJ_00056 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1143
ZFIN\|ZDB-GENE-040809-1		2773	atm "ataxia telangiectasia mut	0.831	0.342	0.370	2.4e-172
UNIPROTKB\|Q5MPF8		3061	atm "Ataxia telangiectasia mut	0.830	0.310	0.377	2.7e-172
UNIPROTKB\|Q13315		3056	ATM "Serine-protein kinase ATM	0.830	0.310	0.375	4.6e-171
RGD\|1593265		3064	Atm "ataxia telangiectasia mut	0.830	0.309	0.375	1e-168
MGI\|MGI:107202		3066	Atm "ataxia telangiectasia mut	0.832	0.310	0.373	1.3e-168
UNIPROTKB\|E1BEI6		3057	ATM "Uncharacterized protein"	0.832	0.311	0.374	6.7e-167
UNIPROTKB\|Q6PQD5		3057	ATM "Serine-protein kinase ATM	0.830	0.310	0.362	7.9e-166
UNIPROTKB\|J9JHR5		3057	ATM "Uncharacterized protein"	0.829	0.310	0.369	1.3e-165
UNIPROTKB\|F1PEL7		3065	ATM "Uncharacterized protein"	0.797	0.297	0.359	2.7e-156
UNIPROTKB\|E1C0Q6		3069	ATM "Uncharacterized protein"	0.756	0.281	0.369	3e-155

ZFIN\|ZDB-GENE-040809-1 atm "ataxia telangiectasia mutated" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1569 (557.4 bits), Expect = 2.4e-172, Sum P(3) = 2.4e-172
 Identities = 384/1037 (37%), Positives = 576/1037 (55%)

Query:   154 GLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANF 213
             G++  LQ  G   +L  Y  GL   K   +  PE  +L+++AAWR+  WD  LP      
Sbjct:  1777 GIVEGLQNFGLCSILSTYLHGLE--KDGMEWGPELRELRFQAAWRSTQWDCDLP------ 1828

Query:   214 PSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAI 273
                + +K G  +E+L + L ALR+ +   F + L +++   V  +   S E+   +Y A+
Sbjct:  1829 ERNEKLKPG-INESLFNALQALRDKEFSLFEQTLNYARGREVEELCRGSLEAVSSLYPAL 1887

Query:   274 VKLQILCHLGVAWDIRWKS-SGESIN-IYPEKQK---IVSEPVIPTVGQLSWLNTEWSSI 328
               LQ +  L    ++  +  +  S+N +Y + Q+   ++++     V  +  L    SSI
Sbjct:  1888 CNLQRISELQSVEELFSRPVTDSSLNEVYRKWQQHSDLLTDSDFSLVEPVLALR---SSI 1944

Query:   329 LKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELK- 387
               +  L  +  +P    +  L+   S       HL+E     R       A  A+  +K 
Sbjct:  1945 --QEALISSETDPDR--KNYLISTYS------SHLMELCRLARSAGNTQLAERAVFHMKQ 1994

Query:   388 --FLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES----NEEAPDV 441
                + +G G       W  +LEEA++   + +H +A+ L K +    ++    N     V
Sbjct:  1995 HNLVMSGSGSSS----WAWQLEEAQVFWVKKEHGLALELLKQMIHKLDNLVCVNPAVVPV 2050

Query:   442 Y----RLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYA 497
             Y    RL G WLAES   +  +ILENYL+ AV   ED      K   ++ Q +F LA ++
Sbjct:  2051 YSECLRLCGSWLAESCLESPAVILENYLERAVEVIEDLWRFKSKLQSQKTQAYFSLARFS 2110

Query:   498 DALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLA 557
             DA ++  E  + S+E++      KH  +E       L    K     Y++K+Q   ++L 
Sbjct:  2111 DAQYQGIENYMKSSEFE-----NKHALLEKAKEEVDLMRERKVNNNRYTVKVQ---RELE 2162

Query:   558 MDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMV 617
             +D +    L  DR+ FL  A+E Y  CL +G+++D  V FRL SLW   +  + V   M 
Sbjct:  2163 LDVKALANLQADRNRFLLKAVENYIECLELGEEHDTWV-FRLASLWLENADVKAVNDKMK 2221

Query:   618 DTIDEVQSYKFIPLVYQIASRMGS-TKDALGLHN--FQFALVSLVKKMAIDHPYHTIFQL 674
               + ++ SYKF+PL+YQ+A+RMG+    ++   +  F   L  L+ + ++DHP+HT+F +
Sbjct:  2222 SGVKKIPSYKFLPLMYQLAARMGTKVSSSMASQDVGFHHVLNELICQSSVDHPHHTLFII 2281

Query:   675 LALANGDRIKDKQRSRNS-------FVVDMDKKXXXXXXXXXXSSYHGAIIRQMKQMVDV 727
             LAL N ++     RSR+S         +D+++                 +++ ++ + + 
Sbjct:  2282 LALVNANKDDSFSRSRSSKSSARQPSPLDLERAEVARKIIDVVRKKRAKMVKDIEMLCNA 2341

Query:   728 YIKLAELETRREDTNKR-IQLPRE--IRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFK 784
             YI LA ++  R  T K+ I +P E  +  ++ LE V + T  + +D + +Y +      +
Sbjct:  2342 YITLAYMDASRHKTEKKAIPIPAEQPLMQIKDLEDVIIPTMDIKVDPSGRYED--VVTVR 2399

Query:   785 GLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHR 844
                    +  G+N PK+++C GSDG   RQL K G DDLRQDAVM+Q F + +T L+ + 
Sbjct:  2400 SFKRHFHLAGGVNLPKIIDCEGSDGISRRQLVK-GQDDLRQDAVMQQVFHMCSTLLQRNA 2458

Query:   845 DTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKC 904
             +T KR+L +R YKVVPF+  +G+LEW  GTVP+G++L+   +  GAH R+   DW+ + C
Sbjct:  2459 ETRKRKLNIRRYKVVPFSQRSGVLEWCSGTVPIGEFLVDPQK--GAHKRFRPQDWANMLC 2516

Query:   905 REHMSNVK-----DKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSM 959
             R+ M   +     DK  AF EVC+NFRPV  YF +ERFL PA W E+RLAYTRSVA SS+
Sbjct:  2517 RKKMMEAQRMEFNDKLQAFTEVCQNFRPVFRYFCMERFLDPAIWLERRLAYTRSVATSSI 2576

Query:   960 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT 1019
             VGYIVGLGDRH  NILID+ T+E+VHIDLGVAFEQG +L TPE VPFRL+RDI+DGMG+T
Sbjct:  2577 VGYIVGLGDRHIQNILIDELTSELVHIDLGVAFEQGKILPTPETVPFRLSRDIVDGMGIT 2636

Query:  1020 GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKA--LQR---QKEMDD 1074
             GVEGVFRRCCEKT+ VMR+++EALLTIVEV ++DPL+ W ++PLKA  LQ+   Q E++ 
Sbjct:  2637 GVEGVFRRCCEKTMEVMRSSQEALLTIVEVLLYDPLFDWTMNPLKAFYLQQHDEQAELNA 2696

Query:  1075 DLETGLEGPE--------DEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDA 1126
              L     G E        D    NK AER L+R+++KL G E G + SV GQV  LIQ A
Sbjct:  2697 TLNPTPGGDEIETHRKASDSQSFNKVAERVLLRLQEKLKGVEDGTVLSVGGQVNLLIQQA 2756

Query:  1127 IDPERFCLMFPGWGAWL 1143
             +DP+    +FPGW AW+
Sbjct:  2757 MDPKNLSRLFPGWQAWV 2773

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA;IMP

GO:0090399 "replicative senescence" evidence=IEA

GO:0016572 "histone phosphorylation" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0000077 "DNA damage checkpoint" evidence=IEA;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000723 "telomere maintenance" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IGI

GO:0005622 "intracellular" evidence=IGI

GO:0016301 "kinase activity" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB\|Q5MPF8 atm "Ataxia telangiectasia mutated" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13315 ATM "Serine-protein kinase ATM" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1593265 Atm "ataxia telangiectasia mutated" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:107202 Atm "ataxia telangiectasia mutated homolog (human)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BEI6 ATM "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6PQD5 ATM "Serine-protein kinase ATM" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|J9JHR5 ATM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PEL7 ATM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C0Q6 ATM "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M3G7	ATM_ARATH	2, ., 7, ., 1, 1, ., 1	0.7303	1.0	0.2964	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.737
3rd Layer	2.7.11	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1143
cd05171		279	cd05171, PIKKc_ATM, Ataxia telangiectasia mutated	1e-176
cd00892		237	cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and	2e-89
cd05164		222	cd05164, PIKKc, Phosphoinositide 3-kinase-related	3e-83
cd05169		280	cd05169, PIKKc_TOR, TOR (Target of rapamycin), cat	1e-75
COG5032		2105	COG5032, TEL1, Phosphatidylinositol kinase and pro	1e-74
smart00146		240	smart00146, PI3Kc, Phosphoinositide 3-kinase, cata	2e-67
cd00142		219	cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI	8e-61
pfam00454		233	pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3-	5e-53
cd05172		235	cd05172, PIKKc_DNA-PK, DNA-dependent protein kinas	6e-53
cd05170		307	cd05170, PIKKc_SMG1, Suppressor of morphogenetic e	1e-45
cd00896		350	cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3	2e-13
cd05167		311	cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinas	1e-12
pfam02259		350	pfam02259, FAT, FAT domain	1e-12
cd05170		307	cd05170, PIKKc_SMG1, Suppressor of morphogenetic e	2e-12
cd05168		293	cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase	2e-12
cd00891		352	cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K),	5e-12
cd00893		289	cd00893, PI4Kc_III, Phosphoinositide 4-kinase (PI4	1e-11
cd05163		253	cd05163, TRRAP, TRansformation/tRanscription domai	1e-11
cd05173		362	cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase	3e-11
pfam02260		33	pfam02260, FATC, FATC domain	5e-09
cd05165		366	cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K)	1e-08
cd05174		361	cd05174, PI3Kc_IA_delta, Phosphoinositide 3-kinase	2e-06
cd00894		365	cd00894, PI3Kc_IB_gamma, Phosphoinositide 3-kinase	7e-06
cd05166		353	cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K	5e-05
cd05175		366	cd05175, PI3Kc_IA_alpha, Phosphoinositide 3-kinase	5e-04

>gnl\|CDD\|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

 Score =  516 bits (1331), Expect = e-176
 Identities = 181/283 (63%), Positives = 221/283 (78%), Gaps = 9/283 (3%)

Query: 783  FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRN 842
                 +      GINAPK++ C GSDG KY+QL K G+DD RQDAVMEQ F LVNT L  
Sbjct: 1    VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDD-RQDAVMEQVFQLVNTLLER 59

Query: 843  HRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFL 902
            +++T KR+L +RTYKVVP +P AGILEWVDGT+PLG+YL+G+T   GAH RY  GDW+  
Sbjct: 60   NKETRKRKLRIRTYKVVPLSPRAGILEWVDGTIPLGEYLVGAT---GAHERYRPGDWTAR 116

Query: 903  KCREHMSNVK-----DKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAAS 957
            KCR+ M+ V+     ++   F ++C+NFRPV  YFFLE+FL P  WFE+RLAYTRSVA S
Sbjct: 117  KCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLDPQDWFERRLAYTRSVATS 176

Query: 958  SMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1017
            S+VGYI+GLGDRHA NILID+ TAEVVHIDLG+AFEQG +L  PE VPFRLTRDI+DGMG
Sbjct: 177  SIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236

Query: 1018 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1060
            +TGVEGVFRRCCEKTL V+R NK+A+LTI+EV ++DPLY W +
Sbjct: 237  ITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWTV 279

ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transition. Patients with the human genetic disorder Ataxia telangiectasia (A-T), caused by truncating mutations in ATM, show genome instability, increased cancer risk, immunodeficiency, compromised mobility, and neurodegeneration. A-T displays clinical heterogeneity, which is correlated to the degree of retained ATM activity. Length = 279

>gnl\|CDD\|119418 cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119424 cd05164, PIKKc, Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119429 cd05169, PIKKc_TOR, TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain	Back alignment and domain information

>gnl\|CDD\|119416 cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase	Back alignment and domain information

>gnl\|CDD\|119432 cd05172, PIKKc_DNA-PK, DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119430 cd05170, PIKKc_SMG1, Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119422 cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119427 cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|216950 pfam02259, FAT, FAT domain	Back alignment and domain information

>gnl\|CDD\|119430 cd05170, PIKKc_SMG1, Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119428 cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119417 cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119419 cd00893, PI4Kc_III, Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119423 cd05163, TRRAP, TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119433 cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|202180 pfam02260, FATC, FATC domain	Back alignment and domain information

>gnl\|CDD\|119425 cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119434 cd05174, PI3Kc_IA_delta, Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119420 cd00894, PI3Kc_IB_gamma, Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|119426 cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>gnl\|CDD\|88554 cd05175, PI3Kc_IA_alpha, Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1143
KOG0892		2806	consensus Protein kinase ATM/Tel1, involved in tel	100.0
KOG0890		2382	consensus Protein kinase of the PI-3 kinase family	100.0
KOG0891		2341	consensus DNA-dependent protein kinase [Replicatio	100.0
KOG0889		3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	100.0
COG5032		2105	TEL1 Phosphatidylinositol kinase and protein kinas	100.0
cd05171		279	PIKKc_ATM Ataxia telangiectasia mutated (ATM), cat	100.0
cd05170		307	PIKKc_SMG1 Suppressor of morphogenetic effect on g	100.0
cd05163		253	TRRAP TRansformation/tRanscription domain-Associat	100.0
cd05169		280	PIKKc_TOR TOR (Target of rapamycin), catalytic dom	100.0
cd05172		235	PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK)	100.0
cd00892		237	PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-rela	100.0
cd05164		222	PIKKc Phosphoinositide 3-kinase-related protein ki	100.0
cd00142		219	PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like f	100.0
cd00891		352	PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic	100.0
cd00896		350	PI3Kc_III Phosphoinositide 3-kinase (PI3K), class	100.0
cd05166		353	PI3Kc_II Phosphoinositide 3-kinase (PI3K), class I	100.0
cd05165		366	PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I,	100.0
cd05177		354	PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), c	100.0
cd05168		293	PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), T	100.0
smart00146		202	PI3Kc Phosphoinositide 3-kinase, catalytic domain.	100.0
cd00894		365	PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), c	100.0
cd05176		353	PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), c	100.0
cd00893		289	PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type I	100.0
cd05174		361	PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), c	100.0
cd05173		362	PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), cl	100.0
PF00454		235	PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kina	100.0
cd05167		311	PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K),	100.0
cd00895		354	PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), cl	100.0
cd05175		366	PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), c	100.0
KOG0906		843	consensus Phosphatidylinositol 3-kinase VPS34, inv	100.0
KOG0905		1639	consensus Phosphoinositide 3-kinase [Signal transd	100.0
KOG0904		1076	consensus Phosphatidylinositol 3-kinase catalytic	100.0
PF02259		352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	100.0
KOG0902		1803	consensus Phosphatidylinositol 4-kinase [Signal tr	99.97
KOG0903		847	consensus Phosphatidylinositol 4-kinase, involved	99.95
PTZ00303		1374	phosphatidylinositol kinase; Provisional	99.93
PF02260		33	FATC: FATC domain; InterPro: IPR003152 The FATC do	99.45
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.87
KOG0892		2806	consensus Protein kinase ATM/Tel1, involved in tel	96.48
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.32
smart00145		184	PI3Ka Phosphoinositide 3-kinase family, accessory	96.29
cd00872		171	PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I,	95.96
cd00870		166	PI3Ka_III Phosphoinositide 3-kinase (PI3K) class I	95.74
cd00864		152	PI3Ka Phosphoinositide 3-kinase family, accessory	95.57
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	94.84
PLN03218		1060	maturation of RBCL 1; Provisional	94.18
cd00869		169	PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II	94.06
PF00613		184	PI3Ka: Phosphoinositide 3-kinase family, accessory	93.94
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	93.52
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	92.79
PRK10747		398	putative protoheme IX biogenesis protein; Provisio	92.42
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	91.96
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	91.56
PRK11788		389	tetratricopeptide repeat protein; Provisional	91.31
PLN03081		697	pentatricopeptide (PPR) repeat-containing protein;	89.29
PF13575		370	DUF4135: Domain of unknown function (DUF4135)	89.23
PLN03218		1060	maturation of RBCL 1; Provisional	89.21
cd00871		175	PI4Ka Phosphoinositide 4-kinase(PI4K), accessory d	88.42
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	88.1
PF12688		120	TPR_5: Tetratrico peptide repeat	86.11
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	85.46
PLN03077		857	Protein ECB2; Provisional	82.96
PLN03077		857	Protein ECB2; Provisional	81.43
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	81.14
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	80.77
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	80.57

>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=6.1e-161  Score=1512.60  Aligned_cols=1053  Identities=43%  Similarity=0.672  Sum_probs=866.5

Q ss_pred             cccccccccCHHHHHHHHHHhchhHHHhhhhhhhhhhhhcc------c---------cCCCCC-CCcCCCcchHHHHHHH
Q 001139            5 WDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKS------L---------TLGSPD-FSHLETLPRHIEILVS   68 (1143)
Q Consensus         5 ~~~~~wL~Id~~~lA~aA~~C~ay~~ALly~E~~~~~~~~~------~---------~~~~~~-~~~~~~~~~~~e~L~~   68 (1143)
                      -+-.||+++++..+++.+++|+++..+..|.|....+...-      .         ....+. .++.+.....+++|.+
T Consensus      1697 ~~~~~~m~~ni~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k~k~~e~~~~~lqDil~~ 1776 (2806)
T KOG0892|consen 1697 SNSIFKMDMNILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPKNKRDELDITLLQDILKK 1776 (2806)
T ss_pred             hhHHHHHHHHHHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHH
Confidence            45578999999999999999999999999999876543100      0         001111 1111222345667777


Q ss_pred             HHhhCCChhhHhhcccccchh-hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhh
Q 001139           69 AVTQINEPDSLYGIIQSHKLS-SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMM  147 (1143)
Q Consensus        69 iY~~L~epD~~~Gi~~~~~l~-~~i~~yE~~g~w~~Al~~Ye~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (1143)
                      +|..|++||+.||+.....++ .+++.|||+++|.+|+..||.+-.- |                               
T Consensus      1777 ~y~~I~~pD~lyG~~~~~~~~~~~l~~~~he~~w~~aL~~~d~~~~~-~------------------------------- 1824 (2806)
T KOG0892|consen 1777 AYESINCPDALYGIKRPTSLKNLILITAEHEKNWPRALSYYDLADMY-P------------------------------- 1824 (2806)
T ss_pred             HHhhCCCcchhcccCCcccccccccchhhhhhhHHHHHHhhcchhhc-c-------------------------------
Confidence            799999999999998877776 6899999999999999999887411 1                               


Q ss_pred             hcchhhhHHHHHHhhchhhHHHHHHhhhccccCCCCCCcchhHHHHHHHHcCCCCCCCcccCCCCCCCCCCCccchhhhh
Q 001139          148 QRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHEN  227 (1143)
Q Consensus       148 ~~~~~~gllrcL~~LG~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~eaAWrl~~Wd~~~~~~~~~~~~~~~~~~~~f~~~  227 (1143)
                      ......|..++|++.|+.+++..|++|+....  ....+...+..|++|||+|+||...+... +   .....+..++..
T Consensus      1825 ss~~~~~~~~sLq~~g~~~I~~~y~~Gl~~~~--~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~-~---~~~~~~~~y~e~ 1898 (2806)
T KOG0892|consen 1825 SSEDEAGFINSLQNAGFFHILEFYIDGLKSND--KIDEPSNEELVYEAAWRLGKWDILTLSLV-D---QNKTKGDYYHES 1898 (2806)
T ss_pred             chHhHhHHHHHHHHhcchhHHHHHhcChhhhh--hhhhhhhhhhhHHHHHhcCCcccCCcchh-h---hhhhhchhHHHH
Confidence            12345899999999999999999999998765  34556777889999999999998544221 1   244567788999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccccccccccc
Q 001139          228 LHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIV  307 (1143)
Q Consensus       228 l~~~L~al~~~d~~~~~~~l~~aR~~l~~~Ls~~~~ES~~~~y~~l~~Lq~L~ELee~~~~~~~~~~~~~~~~~~~~~~~  307 (1143)
                      +|.+++|+++++++.+...++.+|...+..+...+.|+....|+.+.+||.+.+||.+.++.+.+.              
T Consensus      1899 ~f~~l~al~ere~e~~yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~-------------- 1964 (2806)
T KOG0892|consen 1899 LFEALRALHEREIEGSYLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTAD-------------- 1964 (2806)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhc--------------
Confidence            999999999999999999999999999999999999999999999999999999999998765221              


Q ss_pred             CCCCcccchhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcchh--------H----HHHHHHHHHHHHHccCC
Q 001139          308 SEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKD--------F----TMQHLLESASTLRKGFR  375 (1143)
Q Consensus       308 ~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~E~iL~~R~~ll~~l~~~~--------~----~~~~wl~~a~laRk~g~  375 (1143)
                            +......+...|+.-++.....++..+-....+.+++.....+.        .    ..-+-+....++|+...
T Consensus      1965 ------~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~ 2038 (2806)
T KOG0892|consen 1965 ------KHQSNTDILQKWKTNLQLSSQLMECLSLLIEDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLI 2038 (2806)
T ss_pred             ------chhhhhHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence                  11123446677888887766666666655555555554332221        0    11122222344444333


Q ss_pred             hHHHHH---HHHHHHhhcCCCCCCCCchhhhHHHHHHHHHHHcCChHHHHHHHHHH-------------HHhccC-CCch
Q 001139          376 LSQAAA---ALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI-------------SENYES-NEEA  438 (1143)
Q Consensus       376 ~~~A~~---aL~~l~~l~~~~~~~~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l-------------~~~~~~-~~~~  438 (1143)
                      .+.-.+   ++..++.-      .    .-...++.|+..|+++....+-..|-..             ..+... ....
T Consensus      2039 ~~~~~~~~r~~~~i~~~------~----~~~~~~s~aq~~~k~~~~~~~e~iL~~~~~kne~~~~~s~~~~~~~~lk~~~ 2108 (2806)
T KOG0892|consen 2039 ADLLQNIARAFPVIMLS------I----KLLCKFSLAQENLKHDIDKLSEAILWQRDEKNEAIISLSESLAKNNSLKEFP 2108 (2806)
T ss_pred             hhhHHhHHHhhHHHHHH------H----HHHhhhhhhhhhccchhhhhHHHHHHHHHhhhhHHHHHHhhhhhcchhhhhH
Confidence            333322   21111100      0    0012355666666665544443333221             111111 2345


Q ss_pred             hHHHHHhhhhHHhhhcCChHHHHHHhhhhhhhccccccccc-hhhHHHHhhHHhHHHhhHHHHHhhHHHHhhhHHHHHHH
Q 001139          439 PDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTD-KKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAM  517 (1143)
Q Consensus       439 a~~~~llg~Wlaesr~e~~~~I~~~Y~~~a~~~~~~~~~~~-~~~~~~~~~~~~~lA~f~D~~~~~~~~~l~s~e~~~~~  517 (1143)
                      .++++.+|+|++|++++++..|+++|+.+|+.+++...+.. +........+++++|+|.|.+|+..++++++.+|+.++
T Consensus      2109 ~~~~a~~g~Wlaetk~ens~~i~e~yl~~a~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~ 2188 (2806)
T KOG0892|consen 2109 SDIYAVLGKWLAETKSENSALISEKYLEKAVSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLK 2188 (2806)
T ss_pred             HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHH
Confidence            78899999999999999999999999999999888663211 12223346889999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhhcccCccchhhHHHHHHHHHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcchhhHH
Q 001139          518 RLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVF  597 (1143)
Q Consensus       518 ~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~l~k~~~~D~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~  597 (1143)
                      +++++.++++..+.++....       .+.+..+.++++.+|+++++.+..+|++||..|++||++|+..|++||...++
T Consensus      2189 ~l~k~~~~~~~~~~er~~q~-------~~~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~ 2261 (2806)
T KOG0892|consen 2189 DLQKLERSTVEASNEREEQM-------RKNHHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIF 2261 (2806)
T ss_pred             HHHHHHHhhhhhhHHHHHHH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHH
Confidence            99998888888765544221       11345678899999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCcHHHHHHHHHhhcccCccchhHchHHHHhhhCCCccccccccHHHHHHHHHHHHHHhCChhhHHHHHhc
Q 001139          598 RLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLAL  677 (1143)
Q Consensus       598 RllsLWf~~~~~~~v~~~l~~~~~~ip~~k~l~~ipQL~srL~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~  677 (1143)
                      |+|+|||++++..++++.|.+.+.+||+|||+||++||+|||+.    .+..+||..|..|+.+++.+||||++|+|+++
T Consensus      2262 R~cslWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~----~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L 2337 (2806)
T KOG0892|consen 2262 RCCSLWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGN----SENNSFQKSLTSLIYRVGRDHPYHTLYQLLSL 2337 (2806)
T ss_pred             HHhhhhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhcc----ccCchHHHHHHHHHHHHhccCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999994    13567999999999999999999999999999


Q ss_pred             ccccc-hhhhhccccchhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhcccccccc-cccchhhhh--
Q 001139          678 ANGDR-IKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKR-IQLPREIRC--  753 (1143)
Q Consensus       678 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~-~~~~~~~~~--  753 (1143)
                      .+... .++..+++.+  ++.+|..+++.++.......++++++++.+|++|+.+|+.++.+.++..+ +.+|.....  
T Consensus      2338 ~~~~rd~e~~n~sr~s--l~~~rki~a~l~~~~v~~~~~~~v~~v~~lc~~yI~lAnl~~~q~~t~~k~v~~p~~~~~~K 2415 (2806)
T KOG0892|consen 2338 VNAVRDNEDENRSRGS--IDRDRKIAAELDLCDVNQGAGNMVRQLECLCEAYISLANLKTSQNDTTSKLVRLPGYQWFLK 2415 (2806)
T ss_pred             HhcCcChhhhhhcccc--cchhHHHHHHHhhhHhhccchhHHHHHHHHHHHHHHHhcCcccccchhhhhhcCccccHHHh
Confidence            98876 4566677765  67889999999888888889999999999999999999987766666655 556655444  


Q ss_pred             hcccccccccccccCCCCCCCcCCCCcCccccccceEEEecCCCCceEEEEEcCCCCeeeEEeecCCcchhhhHHHHHHH
Q 001139          754 LRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFF  833 (1143)
Q Consensus       754 l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~~~~~~~v~~s~~~Pk~i~~~gsdG~~y~~l~K~g~ddlR~D~r~~Ql~  833 (1143)
                      ..+++.+|+||+.+++++++.  .+++|+|.+|.++|.+.+|.+.||+|+|.||||++|+.|+|+|+||||||++|+|+|
T Consensus      2416 ~~nl~~v~~pT~ev~v~~s~~--~~~~p~i~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF 2493 (2806)
T KOG0892|consen 2416 QLNLEGVPPPTMNVKVNDSGD--YGNIPTVVSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVF 2493 (2806)
T ss_pred             hhhccCCCCCCCCccccCCcc--cCCCceEEecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHH
Confidence            445567888888888887763  467999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCccccccceeeeeceEEEcCCCCceeEecCCCcchHHHhhhhccCCCCCCCCCCCcchhHHHHhhccchH-
Q 001139          834 GLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK-  912 (1143)
Q Consensus       834 ~~~N~ll~~~~et~~r~L~i~~y~Vipls~~~gliE~v~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  912 (1143)
                      +++|++|.++++|++|+|.||||+||||+|++|+||||.||+|++++|....  +|+|.||+|+||++.+||+.|.+.+ 
T Consensus      2494 ~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~tiplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~ 2571 (2806)
T KOG0892|consen 2494 GQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTNTIPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQK 2571 (2806)
T ss_pred             HHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccCCeehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999997544  7999999999999999999998776 


Q ss_pred             ----hHHHHHHHHHHhhhhhHHHHHHHhcCCchHHHHHHHHHHHhhhhHHHHHHhhccCCCCCCceEEecCCCeEEEeec
Q 001139          913 ----DKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDL  988 (1143)
Q Consensus       913 ----~k~~~f~~i~~~~~pvl~~~~~~~~~~~~~w~~~r~~f~~S~A~~Si~~yilglgDRh~~NIll~~~tG~v~hiDf  988 (1143)
                          +|+++|.+||.++.||||+||++.||+|.+||++|++||||+|+.|||||||||||||..|||||..||+||||||
T Consensus      2572 k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDl 2651 (2806)
T KOG0892|consen 2572 KSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDL 2651 (2806)
T ss_pred             ccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEee
Confidence                7899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhccccCCCCCCCCCccccHHHHhhhcccccccchHHHHHHHHHHHhhChHHHHHHHHHHccCCccccccChhHHHhh
Q 001139          989 GVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQR 1068 (1143)
Q Consensus       989 g~~f~~~~~l~~pE~VPFRLT~~i~~~~g~~g~eG~F~~~~~~~~~~Lr~~~~~l~~~L~~f~~Dpl~~w~~~~~~~~~~ 1068 (1143)
                      |++||+|+.+|+||+|||||||+||||||++||||+||+|||.||.+||++++.+++|||+|+||||++|.++|.|+..+
T Consensus      2652 GiAFEQGkilptPE~VPFRLTRDiVdgmGItGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~ 2731 (2806)
T KOG0892|consen 2652 GIAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKK 2731 (2806)
T ss_pred             eeehhcCCcCCCCCcccceeehhhccccCccCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCCcccccc-chhHHHHHHHHhhccCCCCCCCccCHHHHHHHHHHHccChhhhHhhCcccccCC
Q 001139         1069 QKEMDDDLETGLEGPEDEYEG-NKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1143 (1143)
Q Consensus      1069 ~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~v~~kl~g~~~~~~~sv~~~V~~LI~~Atd~~nL~~m~~gW~pwl 1143 (1143)
                      |++.+. .....++...+..+ +..|.|++.|+.+||.|++.|..+||++||++|||+||||+|||+|||||.||+
T Consensus      2732 q~~e~~-e~~n~~~~~~~~~~nd~~a~r~l~r~q~kl~g~e~g~~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2732 QKEEDE-ENFNLSGNITEDASNDRNAVRALMRAQRKLDGVEQGTMLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred             HHhhcc-hhcccccchhhhhccchHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence            986322 12223332233333 578899999999999999999999999999999999999999999999999996

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]	Back alignment and domain information

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]	Back alignment and domain information

>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain	Back alignment and domain information

>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases	Back alignment and domain information

>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]	Back alignment and domain information

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases	Back alignment and domain information

>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00303 phosphatidylinositol kinase; Provisional	Back alignment and domain information

>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain)	Back alignment and domain information

>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases	Back alignment and domain information

>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases	Back alignment and domain information

>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases	Back alignment and domain information

>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PRK10747 putative protoheme IX biogenesis protein; Provisional	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional	Back alignment and domain information

>PF13575 DUF4135: Domain of unknown function (DUF4135)	Back alignment and domain information

>PLN03218 maturation of RBCL 1; Provisional	Back alignment and domain information

>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PF12688 TPR_5: Tetratrico peptide repeat	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>PLN03077 Protein ECB2; Provisional	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1143
2y3a_A		1092	Crystal Structure Of P110beta In Complex With Icsh2		1e-10
2x6f_A		696	The Crystal Structure Of The Drosophila Class Iii P		5e-09
3ls8_A		614	Crystal Structure Of Human Pik3c3 In Complex With 3		2e-08
3ihy_A		600	Human Pik3c3 Crystal Structure Length = 600		2e-08
1e8x_A		961	Structural Insights Into Phoshoinositide 3-Kinase E		3e-07
1e7u_A		961	Structure Determinants Of Phosphoinositide 3-Kinase		3e-07
3l54_A		966	Structure Of Pi3k Gamma With Inhibitor Length = 966		2e-06
1he8_A		965	Ras G12v-Pi 3-Kinase Gamma Complex Length = 965		3e-06
4dk5_A		959	Crystal Structure Of Human Pi3k-Gamma In Complex Wi		3e-06
3dbs_A		960	Structure Of Pi3k Gamma In Complex With Gdc0941 Len		3e-06
3cst_A		966	Crystal Structure Of Pi3k P110gamma Catalytical Dom		3e-06
1e8y_A		966	Structure Determinants Of Phosphoinositide 3-Kinase		3e-06
3apc_A		966	Crystal Structure Of Human Pi3k-Gamma In Complex Wi		3e-06
3nzs_A		954	Structure-Based Optimization Of Pyrazolo -Pyrimidin		3e-06
3ene_A		959	Complex Of Pi3k Gamma With An Inhibitor Length = 95		3e-06
3qaq_A		960	Crystal Structure Of Pi3k-Gamma In Complex With Tri		3e-06
4anu_A		980	Complexes Of Pi3kgamma With Isoform Selective Inhib		3e-06
4anv_A		980	Complexes Of Pi3kgamma With Isoform Selective Inhib		3e-06
4anx_A		980	Complexes Of Pi3kgamma With Isoform Selective Inhib		8e-06
4ajw_A		934	Discovery And Optimization Of New Benzimidazole- An		2e-05
2wxf_A		940	The Crystal Structure Of The Murine Class Ia Pi 3-K		2e-05
3zim_A		940	Discovery Of A Potent And Isoform-selective Targete		8e-05
3hhm_A		1091	Crystal Structure Of P110alpha H1047r Mutant In Com		9e-05
2rd0_A		1096	Structure Of A Human P110alpha/p85alpha Complex Len		1e-04
3hiz_A		1096	Crystal Structure Of P110alpha H1047r Mutant In Com		1e-04
4a55_A		1096	Crystal Structure Of P110alpha In Complex With Ish2		1e-04

>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of P85beta And The Drug Gdc-0941 Length = 1092