Citrus Sinensis ID: 001141

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140--

MNNGEGTRGEVSEVASPESYGGDVSPASLSHYSSCGESEFERYCSANSVMGTPSVRSSFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEMESGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGVYNEEKGHCSDGFDGNGMEGEEDGTSLRYEHSEDEDSMYNYGSDEEHRGKLYYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKREPIIESGKNLLIFTSKSTIGFPSGGQKEQGNDATDESVVSEKVRGADECEENINRLTATPVGAPSSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGTDLSEESNRVSSPTPSNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEVSTNDSGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKLCPSAFENITNASKDSPSSADLVKEHPAKSKNLELNDFYDEVVHEMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTASTSGTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIGSMLPYVRCPFRRSINKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTSLVVETAVNSVIRASHSANAEANGPLNLLGNRAATGLSIGLLSRLFSKPKPDRAENRDSNNVILMGSLPNTSI

ccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEEEEcccEEEEEcccHHHHHHHHHHHHHcccccccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccccccEEEEcccccHHHHHHcccccccccccccccccccHHHHHHHHccccccEEEcccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHcccccccccccccccccccEEEEcccccccc

ccccccccccccccccccccccccccccccccccccccHHHHEcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEEcccccccccEcccccccccccccccccccccccccccccEEEcccEEEEccccccccccEEcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEcccccccccEEEcccEEcccccHHHHHHHccccEEcccHHHHcccccccccccccEEEEEEEEEEEcccccccccccccccccEEEEEccccHHHHHHHccccEcccccccccccccHHEcccHHHHHHHcccHHHHHHHcccccEcccccccccccHHccccEEEcccccccccHHHHHcccccccccHcHHccccccccccccccccccccccHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEccccEEEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccHccccccccccccHcccccccccccHcccccccccEEEEEccccccHHHHHHHcccEcccccccccccccccHHHHHHcccccccEEHccccEEcHcccccccEEEcHHEEEccccccccHHHHHHHHHHHHHccccEEHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEEcHHHHccccccEEEEcccccEEEcHHcccEEcHHHHcccccccHHHHHHHHccccccEEcccccccccccccHHccccccccccccHHHHHHcccccHHccccccccEEEEcccccccc

mnngegtrgevsevaspesyggdvspaslshysscgeseferycsansvmgtpsvrssfgndcvdsefalkslgfgddlsfenfslggkqklsilgdrriefregrndkdlemesgvsglhcdgdsnfnnsnegrinhhvdmqmngseimieGGERTLVGsvvgnswdietraeegssfgvyneekghcsdgfdgngmegeedgtslryehsededsmynygsdeehrgklyyprnvgrvqeakgenenplfinshvafgsndwddfeqevggstsslTLEKVHEKREPIIESGKNLLIFTskstigfpsggqkeqgndatdesvvsekvrgadeceeninrltatpvgapssaeqenleeekdISVASYQVqggdlltenisnlpqtpiglprfshppqdvRDIFVTCnqlngtdlseesnrvssptpsnlpkfyspdryvrnvagstqvrgaydlkmhhnngsasdffeveheplvdmaplkIGLDIVdsgmerkhqnlnnkevstndsgifdnqefgyftepvadfsvdqlcsdsigypgelsVEFLEDresklcpsafenitnaskdspssadlvkehpaksknlelndFYDEVVHEMEEILLDysesprarlSQVNQMSQsqislplrdggstastsgtddaypltlvplRIDGVEVIgakqkkgdvslserlvgvkEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSlsadegwslpspwssvekesrkifgnvsPLVVAHRSVLIQECLQSIlhsssfssppnALITFLSQqeslrnspasnplvsgytsfakgtdaenmsALGKTISLVVEIRPHRSMKQMLESQhytcagchkhfddGITLMQDFVQtlgwgkprlceytgqlfcstchtnetavlparvlhhwdftrypvSQLAKSFLDsvynqpmlcvsavnpllyskvpalqHVMGVRKKIgsmlpyvrcpfrrsinkglgsrryllesndffalrdlidlskgpfaalPAMVETVSKKILVHITEQCLiccdvgvpccarqacddpssliftfqegevercksceavfhkpcfkkltscscgtsLVVETAVNSVIRAshsanaeangplnllgnraatGLSIGLLSrlfskpkpdraenrdsnnvilmgslpntsi

mnngegtrgevsevaspesyggdvspASLSHYSSCGESEFERYCSANSVMGTPSVRSSFGNDCVDSEFALKSLGFGDDLSFENfslggkqklsilgdrriefregrndkdlemeSGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGVYNEEKGHCSDGFDGNGMEGEEDGTSLRYEHSEDEDSMYNYGsdeehrgklyYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKRepiiesgknllIFTSKSTIGFpsggqkeqgndatdeSVVSEKVrgadeceeninrltatpvgapsSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGtdlseesnrvssptpsnlpkfyspdryVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHqnlnnkevstndsGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKLCPSAFenitnaskdspssaDLVKehpaksknlelnDFYDEVVHEMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTastsgtddayplTLVPLRIDGVEVIgakqkkgdvslserlvgvkeytvykirvwsgkdqweverRYRDFYTLYRRLKslsadegwslpspwssvekESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIgsmlpyvrcpfrrsinkglgsrrYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTSLVVETAVNSVIRASHSANAEANGPLNLLGNRAATGLSIGLLSRlfskpkpdraenrdsnnvilmgslpntsi

MNNGEGTRGEVSEVASPESYGGDVSPASLSHYSSCGESEFERYCSANSVMGTPSVRSSFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEMESGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGVYNEEKGHCSDGFDGNGMEGEEDGTSLRYEHSEDEDSMYNYGSDEEHRGKLYYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKREPIIESGKNLLIFTSKSTIGFPSGGQKEQGNDATDESVVSEKVRGADECEENINRLTATPVGAPSSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGTDLSEESNRVSSPTPSNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEVSTNDSGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKLCPSAFENITNASKDSPSSADLVKEHPAKSKNLELNDFYDEVVHEMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTASTSGTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHsssfssPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIGSMLPYVRCPFRRSINKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTSLVVETAVNSVIRASHSANAEANGPLNLLGNRAATGLSIGLLSRLFSKPKPDRAENRDSNNVILMGSLPNTSI

******************************************YC*************SFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDR**************************************************IMIEGGERTLVGSVVGNSWDIET************************************************************YY****************PLFINSHVAFGSNDWDDF**************************GKNLLIFTS*************************************************************************DLLTE*I******************DVRDIFVTCNQL***************************RYVRNVAGSTQVRGAYDLKMHHN***ASDFFEVEHEPLVDMAPLKIGLDIVD********************GIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLE***************************************LNDFYDEVVHEMEEILLD**************************************AYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLP**W*******RKIFGNVSPLVVAHRSVLIQECLQSILH***********IT**********************************ALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIGSMLPYVRCPFRRSINKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTSLVVETAVNSVIRASH*******GPLNLLGNRAATGLSIGLLSRL****************************

*******************************************CS*NS**************CVD***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSAD*GWSL****S**********GNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIGSMLPYVRCPFRRSINKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCS*****************************************IGLLSRLF****************ILMGSLPN***

************************SPASLSHYSSCGESEFERYCSANSVMGTPSVRSSFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEMESGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGVYNEEKGHCSDGFDGNGMEGEEDGTSLRYEHSEDEDSMYNYGSDEEHRGKLYYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKREPIIESGKNLLIFTSKSTIGFPS**********************ADECEENINRLTATPVG*************KDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGTD*************SNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEVSTNDSGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKLCPSAFENITNA*************HPAKSKNLELNDFYDEVVHEMEEILLDYSESPRAR**************************GTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIGSMLPYVRCPFRRSINKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTSLVVETAVNSVIRASHSANAEANGPLNLLGNRAATGLSIGLLSRLFSKPKPDRAENRDSNNVILMGSLPNTSI

*************************************S*************T*SVRSSFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEMESGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGV******HCS***************************MYNYGSDEEHRGKLYYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKREPIIESGKNLLIFTSKSTIGFPSG*Q*******TDESVVSEKVRGADECEENINRLTATPVGAPSSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGTDLSEESNRVSSPTPSNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGME************TNDSGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDR**********************ADLVKEHPAKSKNLELNDFYDEVVHEMEEILLDY************************************DAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQES****************************LGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIGSMLPYVRCPFRRSINKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTSLVVET****************************************SKPKP*****RDSNNVIL***L*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1142	2.2.26 [Sep-21-2011]
Q08AW4		748	Pleckstrin homology domai	N/A	no	0.190	0.291	0.298	9e-31
Q8BM47		761	Pleckstrin homology domai	yes	no	0.190	0.286	0.298	5e-30
Q6ZWE6		761	Pleckstrin homology domai	yes	no	0.190	0.286	0.294	3e-29
Q92622		972	Run domain Beclin-1 inter	no	no	0.196	0.230	0.303	3e-28
Q80U62		956	Run domain Beclin-1 inter	no	no	0.196	0.234	0.303	8e-28
Q9Y4G2		1056	Pleckstrin homology domai	no	no	0.182	0.196	0.310	1e-27
Q9H714		662	Uncharacterized protein K	no	no	0.195	0.336	0.307	4e-27
A7E316		663	Uncharacterized protein K	no	no	0.195	0.336	0.303	2e-26
Q5PQS0		1059	Pleckstrin homology domai	no	no	0.178	0.192	0.311	6e-26
Q7TSI1		1074	Pleckstrin homology domai	no	no	0.178	0.189	0.311	1e-25

>sp\|Q08AW4\|PKHM3_XENLA Pleckstrin homology domain-containing family M member 3 OS=Xenopus laevis GN=plekhm3 PE=2 SV=1	Back alignment and function desciption

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 23/241 (9%)

Query: 828  SMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAV 887
            ++++ L +Q + CAGC +               L   K ++C Y+G  +CSTCH ++  +
Sbjct: 489  ALERGLTAQSFKCAGCQRPIG------------LSNEKAKVCSYSGWYYCSTCHVDDGFI 536

Query: 888  LPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIG 947
            +PAR++H+WD +++ VS+ AK FL+ VY +P++ V   NPLLY  V AL HV+ +R+++ 
Sbjct: 537  IPARLIHNWDTSKHKVSKQAKEFLEYVYEEPLIDVHQENPLLYRHVDALAHVVRLRQQLK 596

Query: 948  SMLPYV---RCPFRRSINKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKK 1004
            S+  Y+   R      + + +  R YL +    ++L DL  + +G  A  P +++ +  K
Sbjct: 597  SLRAYLFSCRAVVAEDLRRRIFPREYLFQQIHLYSLSDLQQVVEGKLA--PFLLKII--K 652

Query: 1005 ILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTS 1064
                    C +C   G  C   + C++   +++ F+E    RC++C AVFH  C  +   
Sbjct: 653  FATSHVYSCSLCSQKGFIC---EICNN-GEILYPFEENSTSRCENCGAVFHSDCKVRTVP 708

Query: 1065 C 1065
            C
Sbjct: 709  C 709

Xenopus laevis (taxid: 8355)

>sp\|Q8BM47\|PKHM3_MOUSE Pleckstrin homology domain-containing family M member 3 OS=Mus musculus GN=Plekhm3 PE=1 SV=1	Back alignment and function description

>sp\|Q6ZWE6\|PKHM3_HUMAN Pleckstrin homology domain-containing family M member 3 OS=Homo sapiens GN=PLEKHM3 PE=2 SV=2	Back alignment and function description

>sp\|Q92622\|RUBIC_HUMAN Run domain Beclin-1 interacting and cystein-rich containing protein OS=Homo sapiens GN=KIAA0226 PE=1 SV=4	Back alignment and function description

>sp\|Q80U62\|RUBIC_MOUSE Run domain Beclin-1 interacting and cystein-rich containing protein OS=Mus musculus GN=Kiaa0226 PE=1 SV=2	Back alignment and function description

>sp\|Q9Y4G2\|PKHM1_HUMAN Pleckstrin homology domain-containing family M member 1 OS=Homo sapiens GN=PLEKHM1 PE=1 SV=3	Back alignment and function description

>sp\|Q9H714\|K226L_HUMAN Uncharacterized protein KIAA0226-like OS=Homo sapiens GN=KIAA0226L PE=1 SV=3	Back alignment and function description

>sp\|A7E316\|K226L_BOVIN Uncharacterized protein KIAA0226-like OS=Bos taurus GN=KIAA0226L PE=2 SV=1	Back alignment and function description

>sp\|Q5PQS0\|PKHM1_RAT Pleckstrin homology domain-containing family M member 1 OS=Rattus norvegicus GN=Plekhm1 PE=1 SV=1	Back alignment and function description

>sp\|Q7TSI1\|PKHM1_MOUSE Pleckstrin homology domain-containing family M member 1 OS=Mus musculus GN=Plekhm1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1142
224121718		1060	predicted protein [Populus trichocarpa]	0.909	0.980	0.531	0.0
359491239		1144	PREDICTED: uncharacterized protein LOC10	0.951	0.950	0.517	0.0
255540635		1061	conserved hypothetical protein [Ricinus	0.881	0.949	0.520	0.0
147841528		1333	hypothetical protein VITISV_003766 [Viti	0.905	0.775	0.504	0.0
297733763		1008	unnamed protein product [Vitis vinifera]	0.833	0.944	0.518	0.0
224135827		936	predicted protein [Populus trichocarpa]	0.806	0.983	0.498	0.0
356518963		947	PREDICTED: uncharacterized protein LOC10	0.704	0.850	0.503	0.0
356507260		969	PREDICTED: uncharacterized protein LOC10	0.724	0.853	0.502	0.0
357461933		976	Pleckstrin homology domain-containing fa	0.581	0.680	0.578	0.0
449477650		1117	PREDICTED: uncharacterized LOC101208306	0.488	0.499	0.644	0.0

>gi\|224121718\|ref\|XP_002318655.1\| predicted protein [Populus trichocarpa] gi\|222859328\|gb\|EEE96875.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1073 bits (2775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1160 (53%), Positives = 759/1160 (65%), Gaps = 121/1160 (10%)

Query: 3    NGEGTRGEVSEVASP----ESYGGDVSPASLSHYSSCGESEFERYCSANSVMGTPSVRSS 58
            +GEGT   +S    P     S GGD SP   S YSSCGESEFERYCSANSVMGTPS  SS
Sbjct: 2    DGEGTHDTISRGPDPFHSINSDGGDASP---SQYSSCGESEFERYCSANSVMGTPSYSSS 58

Query: 59   FG---NDCVDSEF-ALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEME 114
            FG   NDC++S+  +LKSL   DD  F+             G+R +E R+  N       
Sbjct: 59   FGASFNDCIESDLGSLKSL---DDFGFD-------------GNRNLEDRKLLN------- 95

Query: 115  SGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAE 174
            S +  L    D +F  +  GR+              I G     + S +   W+IE    
Sbjct: 96   SVIDRL----DGSFEENETGRLG-------------ICGASSNELDSRI---WEIE---- 131

Query: 175  EGSSFGVYNEEKGHCSDGFDGN---GMEGEEDGTSLRYEHSEDEDSMYNYGSDEEHRGKL 231
            +G    V   E   C  G D     G +G +DG S RY +SED+DS+   GSD+E R  L
Sbjct: 132  KGDLGRVGCGENEDCQSGLDVEVDLGFDGGKDGGSSRYGYSEDDDSICGCGSDDEKRKNL 191

Query: 232  YYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGST-SSLTLEKVHEKREPI 290
            Y+ RNV   +E K   ENPL + S VAFGS DWDDFE E GG   +SLTL+K  ++ + +
Sbjct: 192  YFRRNVLLGEEGKVGGENPLLMGSSVAFGSEDWDDFELETGGGIGASLTLDKFQQQEQGL 251

Query: 291  IESGKNLLIFTSKSTIGFPSGGQKEQGNDATDESVVSEKVRGADECEENINRLTATPVGA 350
               G         ST+  P  G  E G D T+E    E   G D+  E +N  T  P G 
Sbjct: 252  ATDGNFFSSIPVVSTVA-PVIGDAEIGEDVTEEHAGIEDSEG-DDLGEKLNSGTEIPYGV 309

Query: 351  PSSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQ-DVRDIFVTC 409
             +S   + +E+ +DISV S QVQG   L ++  +    P G P +  P Q D RDI + C
Sbjct: 310  RNSI-VDLVEDMRDISVVSCQVQGAHELAKDDKSTLIMPFGFPGYCEPQQEDARDISLNC 368

Query: 410  NQLNGTDLSEESNRVSSPTPSNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDF 469
            NQ  G++                                       D    + +   SDF
Sbjct: 369  NQAQGSN---------------------------------------DTTELYKSCPVSDF 389

Query: 470  FEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEV-STNDSGIFDNQEFGYF---TEP 525
            FEVE EPLV++ P+ +GL+  D  ME  +  + ++EV  T+D    +N+E G F    +P
Sbjct: 390  FEVEQEPLVEITPVGLGLNFTDPHMEGLNPCVKSEEVVCTDDKKALENEEAGNFEVEADP 449

Query: 526  VADFSVDQLCSDSIGYPGELSVE-FLEDRESKLCPSAFENITNASKDSPSSADLVKEHPA 584
            ++D + +QL   ++ Y    S E  +  + +   P    N+  AS+++P S  L ++H A
Sbjct: 450  LSD-TTNQLHFCAVEYSENASAESLVTQKLNSTLPMLENNMKKASENAPGSVILYEDHSA 508

Query: 585  --KSKNLELNDFYDEVVHEMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTASTS 642
              K++N EL +FYDE+V+EMEEILLD  ESP AR  Q N + QSQ+ LPLRDGGSTASTS
Sbjct: 509  VVKAENFELIEFYDEIVNEMEEILLDSGESPGARFLQGNHLFQSQLLLPLRDGGSTASTS 568

Query: 643  GTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVER 702
            GT++AYPL   P RID VEV+GAKQKKGDVSLSERLVGVKEYT+Y IRVWSGKDQWEVER
Sbjct: 569  GTNEAYPLITHPKRIDRVEVVGAKQKKGDVSLSERLVGVKEYTMYIIRVWSGKDQWEVER 628

Query: 703  RYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSI 762
            RYRDF+TLYRRLKSL AD+GW+LPSPWSSVEKESRKIFGN SP VV+ RSVLI+ECL S 
Sbjct: 629  RYRDFHTLYRRLKSLFADQGWTLPSPWSSVEKESRKIFGNASPDVVSERSVLIKECLHST 688

Query: 763  LHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVE 822
            +HS  FSSPP+AL+ FL  Q S  +SPA+   V+      KG DA N+S LGKTISL+VE
Sbjct: 689  IHSGFFSSPPSALVWFLCPQGSFPSSPAARMPVARSIFSNKGADAGNISTLGKTISLIVE 748

Query: 823  IRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882
            I+PH+S KQMLE QHYTCAGCHKHFDDG+TLMQDFVQTLGWGKPRLCEYTGQLFCS+CHT
Sbjct: 749  IQPHKSTKQMLEVQHYTCAGCHKHFDDGMTLMQDFVQTLGWGKPRLCEYTGQLFCSSCHT 808

Query: 883  NETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGV 942
            NETAVLPARVLH+WDF +YPVS LAKS+LDS++ QPMLCVSAVNPLL+SKVPAL H+MGV
Sbjct: 809  NETAVLPARVLHYWDFNQYPVSHLAKSYLDSIHEQPMLCVSAVNPLLFSKVPALHHIMGV 868

Query: 943  RKKIGSMLPYVRCPFRRSINKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVS 1002
            RKKIG+ML YVRCPFRR+INK LGSRRYLLESNDFF LRDLIDLSKG FAALP MVETVS
Sbjct: 869  RKKIGTMLQYVRCPFRRTINKVLGSRRYLLESNDFFPLRDLIDLSKGAFAALPVMVETVS 928

Query: 1003 KKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKL 1062
            +KIL HITEQCLICCDVGVPC ARQAC+DPSSLIF FQEGE+ERC SC +VFHKPCF+KL
Sbjct: 929  RKILEHITEQCLICCDVGVPCSARQACNDPSSLIFPFQEGEIERCASCGSVFHKPCFRKL 988

Query: 1063 TSCSCGTSLVVETAVNSVIRASHSANAEANGPLNLLGNRAATGLSIGLLSRLFSKPKPDR 1122
            T+CSCGT L    + + V+ +++  + +A+G   +LG R+ + L +GLLS LFSK +P++
Sbjct: 989  TNCSCGTRL----SADQVMESTNMLSRKASG--FVLGRRSGSSLHLGLLSGLFSKARPEK 1042

Query: 1123 AENRDSNNVILMGSLPNTSI 1142
               +D + +ILMGSLP TS+
Sbjct: 1043 M--KDEDTIILMGSLPTTSL 1060

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359491239\|ref\|XP_003634247.1\| PREDICTED: uncharacterized protein LOC100853506 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255540635\|ref\|XP_002511382.1\| conserved hypothetical protein [Ricinus communis] gi\|223550497\|gb\|EEF51984.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|147841528\|emb\|CAN75324.1\| hypothetical protein VITISV_003766 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297733763\|emb\|CBI15010.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224135827\|ref\|XP_002322170.1\| predicted protein [Populus trichocarpa] gi\|222869166\|gb\|EEF06297.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356518963\|ref\|XP_003528144.1\| PREDICTED: uncharacterized protein LOC100778899 [Glycine max]	Back alignment and taxonomy information

>gi\|356507260\|ref\|XP_003522387.1\| PREDICTED: uncharacterized protein LOC100800081 [Glycine max]	Back alignment and taxonomy information

>gi\|357461933\|ref\|XP_003601248.1\| Pleckstrin homology domain-containing family M member [Medicago truncatula] gi\|355490296\|gb\|AES71499.1\| Pleckstrin homology domain-containing family M member [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449477650\|ref\|XP_004155081.1\| PREDICTED: uncharacterized LOC101208306 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1142
TAIR\|locus:504955665		938	AT3G48195 [Arabidopsis thalian	0.454	0.553	0.646	3.3e-220
MGI\|MGI:2443627		761	Plekhm3 "pleckstrin homology d	0.190	0.286	0.298	4.2e-27
UNIPROTKB\|E1BSU7		759	PLEKHM3 "Uncharacterized prote	0.211	0.317	0.294	6.8e-27
UNIPROTKB\|E2QUW8		757	PLEKHM3 "Uncharacterized prote	0.190	0.287	0.298	1.1e-26
RGD\|1307151		761	Plekhm3 "pleckstrin homology d	0.190	0.286	0.294	1.9e-26
UNIPROTKB\|Q6ZWE6		761	PLEKHM3 "Pleckstrin homology d	0.190	0.286	0.294	3.1e-26
UNIPROTKB\|E1BK05		971	KIAA0226 "Uncharacterized prot	0.199	0.234	0.309	3.3e-26
ZFIN\|ZDB-GENE-030131-2752		1058	plekhm1 "pleckstrin homology d	0.185	0.200	0.316	7.1e-26
UNIPROTKB\|F1NS82		942	F1NS82 "Uncharacterized protei	0.199	0.242	0.305	1.5e-25
UNIPROTKB\|E5GAJ0		971	KIAA0226 "Uncharacterized prot	0.196	0.230	0.307	6.4e-25

TAIR\|locus:504955665 AT3G48195 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1781 (632.0 bits), Expect = 3.3e-220, Sum P(4) = 3.3e-220
 Identities = 344/532 (64%), Positives = 413/532 (77%)

Query:   543 GELSVEFLEDRESKLCPSAFEN--ITNASKDSPSSADLVKEHPAKSKNLELNDFYDEVVH 600
             GE + E L   ++   PS+ ++  +TNASK       +    P K +N ELNDFYD+ VH
Sbjct:   365 GECTSEPLLASQNSDMPSSRDSHPVTNASK-------VTYTQP-KKENTELNDFYDDFVH 416

Query:   601 EMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTASTSGTDDAYPLTLVPLRIDGV 660
             +MEEILLD  ES   R S+ ++M Q Q+SLP RDGG TA+TSG DD+ P      RID V
Sbjct:   417 DMEEILLDSGESSGVRFSKNDKMFQLQLSLPNRDGGQTATTSGLDDSSPTVSQRFRIDRV 476

Query:   661 EVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSAD 720
             EV+G KQKKGDVSLSERLVGVKEYTVY IRVWSGKD+WE+ERRYRDFY+LYRRL SL AD
Sbjct:   477 EVVGVKQKKGDVSLSERLVGVKEYTVYVIRVWSGKDKWEIERRYRDFYSLYRRLTSLFAD 536

Query:   721 EGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHXXXXXXPPNALITFLS 780
             +GW+LP+PW+SVE+ESRKIFG  SP  VA R+VLIQ+CL S+L        PNAL+ FLS
Sbjct:   537 QGWTLPTPWTSVERESRKIFGT-SPNAVAERTVLIQDCLNSVLQSRFFPTLPNALLRFLS 595

Query:   781 QQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTC 840
              Q++  NS   + +VS  T  A    A   S+ G TIS +V+IRPH+S+KQ+LE+QHY C
Sbjct:   596 PQDAYANSSGLDSIVSP-TGSAAIDAATTSSSYGNTISFIVDIRPHKSVKQLLEAQHYIC 654

Query:   841 AGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTR 900
             AGCH++FDDG TL++DFV+ LGWGKPRLCEYTG LFCS+CHTN+ AVLPA VLHHWDF R
Sbjct:   655 AGCHRYFDDGATLVRDFVKALGWGKPRLCEYTGHLFCSSCHTNDMAVLPATVLHHWDFNR 714

Query:   901 YPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKIGSMLPYVRCPFRRS 960
             YPVSQLAKS+LDS++ QPMLCVSAVNP L SKVPAL H+M +RK+I  MLPYVRCPF+++
Sbjct:   715 YPVSQLAKSYLDSIHEQPMLCVSAVNPFLSSKVPALNHIMSIRKRITIMLPYVRCPFQKT 774

Query:   961 INKGLGSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVG 1020
             + KGL SRRYLLES++FFALRDLIDLSKGPFAALPA+VETV +KIL HITEQCL+CCDVG
Sbjct:   775 LYKGLSSRRYLLESSEFFALRDLIDLSKGPFAALPAIVETVRRKILEHITEQCLVCCDVG 834

Query:  1021 VPCCARQACDDPSSLIFTFQE-GEVERCKSCEAVFHKPCFKKLTSCSCGTSL 1071
             VPC ARQACDD SSLIF FQE  EV +C+ C +VFHK C  +L++C CG  L
Sbjct:   835 VPCNARQACDDTSSLIFPFQEKDEVSKCRLCGSVFHKKCLSRLSNCHCGAQL 886

GO:0005737 "cytoplasm" evidence=ISM

GO:0007154 "cell communication" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=ISS

MGI\|MGI:2443627 Plekhm3 "pleckstrin homology domain containing, family M, member 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BSU7 PLEKHM3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QUW8 PLEKHM3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1307151 Plekhm3 "pleckstrin homology domain containing, family M, member 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6ZWE6 PLEKHM3 "Pleckstrin homology domain-containing family M member 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BK05 KIAA0226 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-2752 plekhm1 "pleckstrin homology domain containing, family M (with RUN domain) member 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NS82 F1NS82 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E5GAJ0 KIAA0226 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1142
pfam13901		202	pfam13901, DUF4206, Domain of unknown function (DU	3e-82
cd06093		106	cd06093, PX_domain, The Phox Homology domain, a ph	1e-14
pfam00787		109	pfam00787, PX, PX domain	7e-14
cd06870		109	cd06870, PX_CISK, The phosphoinositide binding Pho	1e-10
smart00312		105	smart00312, PX, PhoX homologous domain, present in	5e-09
cd06871		120	cd06871, PX_MONaKA, The phosphoinositide binding P	7e-08
cd06875		116	cd06875, PX_IRAS, The phosphoinositide binding Pho	1e-07
cd06874		127	cd06874, PX_KIF16B_SNX23, The phosphoinositide bin	4e-07
cd06873		120	cd06873, PX_SNX13, The phosphoinositide binding Ph	5e-07
cd06880		110	cd06880, PX_SNX22, The phosphoinositide binding Ph	4e-06
cd07276		110	cd07276, PX_SNX16, The phosphoinositide binding Ph	6e-05
cd06872		107	cd06872, PX_SNX19_like_plant, The phosphoinositide	3e-04
cd06859		114	cd06859, PX_SNX1_2_like, The phosphoinositide bind	6e-04
cd07277		118	cd07277, PX_RUN, The phosphoinositide binding Phox	7e-04
cd06876		133	cd06876, PX_MDM1p, The phosphoinositide binding Ph	9e-04
cd07300		114	cd07300, PX_SNX20, The phosphoinositide binding Ph	0.001
cd07279		112	cd07279, PX_SNX20_21_like, The phosphoinositide bi	0.002

>gnl\|CDD\|222444 pfam13901, DUF4206, Domain of unknown function (DUF4206)	Back alignment and domain information

 Score =  266 bits (681), Expect = 3e-82
 Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 11/207 (5%)

Query: 867  RLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVN 926
            R C+Y+G+ +CS CH N+ +V+PAR+LH+WDFT+YPVS+ AK  L+ +Y QP+  +  +N
Sbjct: 1    RYCDYSGKYYCSGCHRNDKSVIPARILHNWDFTKYPVSRFAKRLLEQIYEQPLFDLRDLN 60

Query: 927  PLLYSKVPALQHVMGVRKKIGSMLPYV-RCPFRRSINKGL-GSRRYLLESNDFFALRDLI 984
            P LYSKV AL  V  +R+++  M  Y+  C F  S    L   R YLLE    ++L DLI
Sbjct: 61   PSLYSKVKALAKVRRLREQLKLMKDYLVTCRFAVSELLQLRQIREYLLEDIHLYSLADLI 120

Query: 985  DLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCCARQACDDPSSLIFTFQEGEV 1044
            D+S G    L   +E + KK   H+T  C +C   G  C   + CD+   +IF FQ    
Sbjct: 121  DVSNGSLLPL---LEELIKKAEEHVT-SCELCTGKGFIC---EFCDND-EVIFPFQTDTT 172

Query: 1045 ERCKSCEAVFHKPCFKKLTSCSCGTSL 1071
             RC+ C AVFHK C++  + C     L
Sbjct: 173  SRCEGCGAVFHKECYES-SPCPKCARL 198

This is a family of cysteine-rich proteins. Many members also carry a pleckstrin-homology domain, pfam00169. Length = 202

>gnl\|CDD\|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module	Back alignment and domain information

>gnl\|CDD\|216119 pfam00787, PX, PX domain	Back alignment and domain information

>gnl\|CDD\|132780 cd06870, PX_CISK, The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase	Back alignment and domain information

>gnl\|CDD\|214610 smart00312, PX, PhoX homologous domain, present in p47phox and p40phox	Back alignment and domain information

>gnl\|CDD\|132781 cd06871, PX_MONaKA, The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase	Back alignment and domain information

>gnl\|CDD\|132785 cd06875, PX_IRAS, The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected	Back alignment and domain information

>gnl\|CDD\|132784 cd06874, PX_KIF16B_SNX23, The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23	Back alignment and domain information

>gnl\|CDD\|132783 cd06873, PX_SNX13, The phosphoinositide binding Phox Homology domain of Sorting Nexin 13	Back alignment and domain information

>gnl\|CDD\|132790 cd06880, PX_SNX22, The phosphoinositide binding Phox Homology domain of Sorting Nexin 22	Back alignment and domain information

>gnl\|CDD\|132809 cd07276, PX_SNX16, The phosphoinositide binding Phox Homology domain of Sorting Nexin 16	Back alignment and domain information

>gnl\|CDD\|132782 cd06872, PX_SNX19_like_plant, The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins	Back alignment and domain information

>gnl\|CDD\|132769 cd06859, PX_SNX1_2_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2	Back alignment and domain information

>gnl\|CDD\|132810 cd07277, PX_RUN, The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains	Back alignment and domain information

>gnl\|CDD\|132786 cd06876, PX_MDM1p, The phosphoinositide binding Phox Homology domain of yeast MDM1p	Back alignment and domain information

>gnl\|CDD\|132833 cd07300, PX_SNX20, The phosphoinositide binding Phox Homology domain of Sorting Nexin 20	Back alignment and domain information

>gnl\|CDD\|132812 cd07279, PX_SNX20_21_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1142
PF13901		202	DUF4206: Domain of unknown function (DUF4206)	100.0
KOG1829		580	consensus Uncharacterized conserved protein, conta	100.0
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	99.89
cd06870		109	PX_CISK The phosphoinositide binding Phox Homology	99.79
cd06861		112	PX_Vps5p The phosphoinositide binding Phox Homolog	99.78
cd06872		107	PX_SNX19_like_plant The phosphoinositide binding P	99.77
cd07282		124	PX_SNX2 The phosphoinositide binding Phox Homology	99.76
cd07286		127	PX_SNX18 The phosphoinositide binding Phox Homolog	99.76
cd06898		113	PX_SNX10 The phosphoinositide binding Phox Homolog	99.76
cd06877		119	PX_SNX14 The phosphoinositide binding Phox Homolog	99.76
cd07280		120	PX_YPT35 The phosphoinositide binding Phox Homolog	99.76
cd07279		112	PX_SNX20_21_like The phosphoinositide binding Phox	99.76
cd07276		110	PX_SNX16 The phosphoinositide binding Phox Homolog	99.75
cd06875		116	PX_IRAS The phosphoinositide binding Phox Homology	99.75
cd07281		124	PX_SNX1 The phosphoinositide binding Phox Homology	99.75
cd06878		127	PX_SNX25 The phosphoinositide binding Phox Homolog	99.75
cd07301		112	PX_SNX21 The phosphoinositide binding Phox Homolog	99.75
cd06860		116	PX_SNX7_30_like The phosphoinositide binding Phox	99.75
cd07295		116	PX_Grd19 The phosphoinositide binding Phox Homolog	99.75
cd06867		112	PX_SNX41_42 The phosphoinositide binding Phox Homo	99.75
cd07285		126	PX_SNX9 The phosphoinositide binding Phox Homology	99.75
cd06865		120	PX_SNX_like The phosphoinositide binding Phox Homo	99.74
cd07293		123	PX_SNX3 The phosphoinositide binding Phox Homology	99.74
cd07283		116	PX_SNX30 The phosphoinositide binding Phox Homolog	99.74
cd06863		118	PX_Atg24p The phosphoinositide binding Phox Homolo	99.73
cd06866		105	PX_SNX8_Mvp1p_like The phosphoinositide binding Ph	99.73
cd07300		114	PX_SNX20 The phosphoinositide binding Phox Homolog	99.73
cd07284		116	PX_SNX7 The phosphoinositide binding Phox Homology	99.73
cd06894		123	PX_SNX3_like The phosphoinositide binding Phox Hom	99.73
cd06862		125	PX_SNX9_18_like The phosphoinositide binding Phox	99.73
cd06873		120	PX_SNX13 The phosphoinositide binding Phox Homolog	99.72
cd06893		132	PX_SNX19 The phosphoinositide binding Phox Homolog	99.72
cd06859		114	PX_SNX1_2_like The phosphoinositide binding Phox H	99.71
cd06897		108	PX_SNARE The phosphoinositide binding Phox Homolog	99.71
cd07287		118	PX_RPK118_like The phosphoinositide binding Phox H	99.71
cd07277		118	PX_RUN The phosphoinositide binding Phox Homology	99.71
cd06864		129	PX_SNX4 The phosphoinositide binding Phox Homology	99.7
cd06881		117	PX_SNX15_like The phosphoinositide binding Phox Ho	99.7
cd06880		110	PX_SNX22 The phosphoinositide binding Phox Homolog	99.7
cd06871		120	PX_MONaKA The phosphoinositide binding Phox Homolo	99.7
cd06868		120	PX_HS1BP3 The phosphoinositide binding Phox Homolo	99.7
cd07294		132	PX_SNX12 The phosphoinositide binding Phox Homolog	99.69
cd07288		118	PX_SNX15 The phosphoinositide binding Phox Homolog	99.69
cd06882		123	PX_p40phox The phosphoinositide binding Phox Homol	99.67
cd06883		109	PX_PI3K_C2 The phosphoinositide binding Phox Homol	99.66
cd06876		133	PX_MDM1p The phosphoinositide binding Phox Homolog	99.64
cd06879		138	PX_UP1_plant The phosphoinositide binding Phox Hom	99.64
cd06884		111	PX_PI3K_C2_68D The phosphoinositide binding Phox H	99.64
cd06874		127	PX_KIF16B_SNX23 The phosphoinositide binding Phox	99.62
KOG2527		144	consensus Sorting nexin SNX11 [Intracellular traff	99.62
cd06886		106	PX_SNX27 The phosphoinositide binding Phox Homolog	99.61
cd06895		140	PX_PLD The phosphoinositide binding Phox Homology	99.59
smart00312		105	PX PhoX homologous domain, present in p47phox and	99.59
cd06885		104	PX_SNX17_31 The phosphoinositide binding Phox Homo	99.59
cd06869		119	PX_UP2_fungi The phosphoinositide binding Phox Hom	99.57
cd06093		106	PX_domain The Phox Homology domain, a phosphoinosi	99.53
cd06888		119	PX_FISH The phosphoinositide binding Phox Homology	99.52
PF00787		113	PX: PX domain; InterPro: IPR001683 The PX (phox) d	99.52
cd07296		135	PX_PLD1 The phosphoinositide binding Phox Homology	99.49
cd06887		118	PX_p47phox The phosphoinositide binding Phox Homol	99.49
cd06890		112	PX_Bem1p The phosphoinositide binding Phox Homolog	99.41
cd07290		109	PX_PI3K_C2_beta The phosphoinositide binding Phox	99.4
cd06891		140	PX_Vps17p The phosphoinositide binding Phox Homolo	99.4
cd07289		109	PX_PI3K_C2_alpha The phosphoinositide binding Phox	99.39
KOG2528		490	consensus Sorting nexin SNX9/SH3PX1 and related pr	99.32
cd07291		141	PX_SNX5 The phosphoinositide binding Phox Homology	99.31
cd06892		141	PX_SNX5_like The phosphoinositide binding Phox Hom	99.3
cd07292		141	PX_SNX6 The phosphoinositide binding Phox Homology	99.27
cd07297		130	PX_PLD2 The phosphoinositide binding Phox Homology	99.16
KOG2273		503	consensus Membrane coat complex Retromer, subunit	99.14
cd06889		121	PX_NoxO1 The phosphoinositide binding Phox Homolog	99.02
cd06896		101	PX_PI3K_C2_gamma The phosphoinositide binding Phox	98.61
COG5391		524	Phox homology (PX) domain protein [Intracellular t	98.42
KOG2101		362	consensus Intermediate filament-like protein, sort	98.01
KOG0905		1639	consensus Phosphoinositide 3-kinase [Signal transd	97.42
KOG3784		407	consensus Sorting nexin protein SNX27 [General fun	97.4
cd07298		115	PX_RICS The phosphoinositide binding Phox Homology	96.88
cd07278		114	PX_RICS_like The phosphoinositide binding Phox Hom	96.2
cd07299		113	PX_TCGAP The phosphoinositide binding Phox Homolog	96.2
KOG4773		386	consensus NADPH oxidase [Energy production and con	95.53
PF14446		54	Prok-RING_1: Prokaryotic RING finger family 1	95.33

>PF13901 DUF4206: Domain of unknown function (DUF4206)	Back alignment and domain information

Probab=100.00  E-value=2.7e-60  Score=492.39  Aligned_cols=200  Identities=38%  Similarity=0.802  Sum_probs=189.5

Q ss_pred             ccccccCceecCCCCCCCccccccceeecccCcccccchhHHHHHHHhhcCccccccccCcccccccHHHHHHHHHHHHH
Q 001141          867 RLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQPMLCVSAVNPLLYSKVPALQHVMGVRKKI  946 (1142)
Q Consensus       867 RlC~YtGkYYCs~CH~ndtsVIPARVLhnWDFS~ypVS~iAk~fL~~i~sqPLinL~~lNP~LYs~V~eL~~Ir~LRkqL  946 (1142)
                      |+|+|+|+|||+.|||++++|||||||++|||++||||+.|++||.++|++|+|+|.++||.||.+|++|.+++.||++|
T Consensus         1 R~C~Y~G~yyC~~CH~~~~~vIParil~~WDf~~~pVs~~a~~~L~~~~~~Pl~~i~~~np~ly~~v~~L~~v~~lR~~L   80 (202)
T PF13901_consen    1 RFCDYTGKYYCSSCHWNDTSVIPARILHNWDFRPYPVSRFAKQFLDQIWSKPLINIEALNPSLYSHVKELRKVRELREQL   80 (202)
T ss_pred             CccCCCCCcCCCCCCCCCceeccHHHHHhcCCCccHHHHHHHHHHHHhccCCEeeHHHhCHHHHHHhHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhcccc-CCcchHHHHhhc-CCCCccccCCccccHhHHhhccCCCCcchhHHHHHHHHHHhhhhcccccccccCccccc
Q 001141          947 GSMLPYV-RCPFRRSINKGL-GSRRYLLESNDFFALRDLIDLSKGPFAALPAMVETVSKKILVHITEQCLICCDVGVPCC 1024 (1142)
Q Consensus       947 ~~Mk~YL-rC~~a~sL~k~L-~~R~HLLEd~dlYSL~DLidV~sG~L~~Lp~lLe~l~~~~~~HI~~~CeLCq~KGFICE 1024 (1142)
                      .+|++|+ +|+.+..+...+ +.|.||++++|+|||+||++|++|+|.+   .|+.+.+.+.+||+ +|++|++|||+||
T Consensus        81 ~~l~~yl~~C~~~~~~~~~~~~~~~hl~~~~~~YSl~DL~~v~~G~L~~---~L~~l~~~~~~HV~-~C~lC~~kGfiCe  156 (202)
T PF13901_consen   81 SLLKDYLRTCRSADSLKLQLRQPRDHLLEDPHLYSLADLVQVKSGQLLP---QLEKLVQFAEKHVY-SCELCQQKGFICE  156 (202)
T ss_pred             HHHHHHHHhChHHHHHHhhhccchhhhhhCCceEcHHHHHHHhhchHHH---HHHHHHHHHHHHHH-HhHHHHhCCCCCc
Confidence            9999998 699887666544 7899999999999999999999999875   47899999999996 9999999999999


Q ss_pred             cccCCCCCCCeeeccCCCceeecccccceechhhhcCCCCCCchhhhhHHH
Q 001141         1025 ARQACDDPSSLIFTFQEGEVERCKSCEAVFHKPCFKKLTSCSCGTSLVVET 1075 (1142)
Q Consensus      1025 ~~qiC~d~~dIIFPFq~~~t~rC~~C~SVFHk~Cf~k~~~CPkCaRlr~~k 1075 (1142)
                         +|+++ ++|||||+++|++|++|++|||+.||.+ ..||||+|++.||
T Consensus       157 ---~C~~~-~~IfPF~~~~~~~C~~C~~v~H~~C~~~-~~CpkC~R~~~r~  202 (202)
T PF13901_consen  157 ---ICNSD-DIIFPFQIDTTVRCPKCKSVFHKSCFRK-KSCPKCARRQKRK  202 (202)
T ss_pred             ---cCCCC-CCCCCCCCCCeeeCCcCccccchhhcCC-CCCCCcHhHhccC
Confidence               89974 9999999999999999999999999997 7899999999875

>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase	Back alignment and domain information

>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p	Back alignment and domain information

>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins	Back alignment and domain information

>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2	Back alignment and domain information

>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18	Back alignment and domain information

>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10	Back alignment and domain information

>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14	Back alignment and domain information

>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35	Back alignment and domain information

>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21	Back alignment and domain information

>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16	Back alignment and domain information

>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected	Back alignment and domain information

>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1	Back alignment and domain information

>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25	Back alignment and domain information

>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21	Back alignment and domain information

>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30	Back alignment and domain information

>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19	Back alignment and domain information

>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42	Back alignment and domain information

>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9	Back alignment and domain information

>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins	Back alignment and domain information

>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3	Back alignment and domain information

>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30	Back alignment and domain information

>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein	Back alignment and domain information

>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p	Back alignment and domain information

>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20	Back alignment and domain information

>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7	Back alignment and domain information

>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins	Back alignment and domain information

>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18	Back alignment and domain information

>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13	Back alignment and domain information

>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19	Back alignment and domain information

>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2	Back alignment and domain information

>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi	Back alignment and domain information

>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins	Back alignment and domain information

>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains	Back alignment and domain information

>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4	Back alignment and domain information

>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins	Back alignment and domain information

>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22	Back alignment and domain information

>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase	Back alignment and domain information

>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3	Back alignment and domain information

>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12	Back alignment and domain information

>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15	Back alignment and domain information

>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase	Back alignment and domain information

>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases	Back alignment and domain information

>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p	Back alignment and domain information

>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins	Back alignment and domain information

>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein	Back alignment and domain information

>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23	Back alignment and domain information

>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27	Back alignment and domain information

>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D	Back alignment and domain information

>smart00312 PX PhoX homologous domain, present in p47phox and p40phox	Back alignment and domain information

>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31	Back alignment and domain information

>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins	Back alignment and domain information

>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module	Back alignment and domain information

>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein	Back alignment and domain information

>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]	Back alignment and domain information

>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1	Back alignment and domain information

>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase	Back alignment and domain information

>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p	Back alignment and domain information

>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases	Back alignment and domain information

>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p	Back alignment and domain information

>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases	Back alignment and domain information

>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5	Back alignment and domain information

>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6	Back alignment and domain information

>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6	Back alignment and domain information

>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2	Back alignment and domain information

>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1	Back alignment and domain information

>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases	Back alignment and domain information

>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]	Back alignment and domain information

>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS	Back alignment and domain information

>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins	Back alignment and domain information

>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein	Back alignment and domain information

>KOG4773 consensus NADPH oxidase [Energy production and conversion]	Back alignment and domain information

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1142
1xte_A		154	Crystal Structure Of Cisk-Px Domain Length = 154		2e-04
3p0c_A		130	Nischarin Px-Domain Length = 130		4e-04
1xtn_A		120	Crystal Structure Of Cisk-Px Domain With Sulfates L		7e-04

>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain Length = 154

Back alignment and structure

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFG 741
           K +TVYK+ V  G+ +W V RRY +F  LY  LK         +P         +++IFG
Sbjct: 23  KRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIP---------AKRIFG 73
Query: 742 -NVSPLVVAHRSVLIQECLQSIL 763
            N  P  +  R   + E +Q+++
Sbjct: 74  DNFDPDFIKQRRAGLNEFIQNLV 96

PyMOL of 1xte

>pdb|3P0C|A Chain A, Nischarin Px-Domain Length = 130

Back alignment and structure

>pdb|1XTN|A Chain A, Crystal Structure Of Cisk-Px Domain With Sulfates Length = 120

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1142
3p0c_A		130	Nischarin; structural genomics, structural genomic	9e-21
2v14_A		134	Kinesin-like motor protein C20ORF23; plus-END kine	5e-19
1xte_A		154	Serine/threonine-protein kinase SGK3; CISK, PX dom	1e-17
2ett_A		128	Sorting nexin-22; PX domain, BC019655, SNX22_human	1e-14
1h6h_A		143	Neutrophil cytosol factor 4; PX domain; HET: PIB;	2e-12
2iwl_X		140	Phosphatidylinositol-4-phosphate 3-kinase C2 domai	3e-11
2ar5_A		121	Phosphoinositide 3-kinase; PX domain, transferase;	6e-11
1kq6_A		141	NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha	7e-11
1kmd_A		117	VAM7P, vacuolar morphogenesis protein VAM7; PX dom	1e-10
2l73_A		149	NADPH oxidase organizer 1; cell membrane, PX domai	6e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1ocs_A		162	Sorting nexin GRD19; sorting protein, PX-domain, y	4e-09
2v6v_A		156	BUD emergence protein 1; homotypic fusion, regulat	9e-09
2i4k_A		128	Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al	5e-08
3lui_A		115	Sorting nexin-17, SNX17; PX domain, endosome, phos	7e-08
2csk_A		146	Sorting nexin 12; SNX12, PX domain, structural gen	8e-08
2wwe_A		127	Phosphoinositide-3-kinase, class 2, gamma polypept	3e-07
3iq2_A		138	Sorting nexin-7; SNX7, PHOX, protein signalling, S	6e-07
3dyt_A		366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	8e-06
4akv_A		386	Sorting nexin-33; transport protein, organelle bio	2e-05
2dyb_A		341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	7e-05

>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130	Back alignment and structure

 Score = 88.4 bits (219), Expect = 9e-21
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 13/111 (11%)

Query: 673 SLSERLVG---VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPW 729
           S+  R+VG   V  YTVY I+V  G  +W V+ RY DF+ L+ +L +    +   LP   
Sbjct: 22  SMEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLP--- 78

Query: 730 SSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLS 780
                  +KI G  S  +V  R   ++  LQ +L +    +P   L  FL 
Sbjct: 79  ------PKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPR-VLAHFLH 122

PyMOL of 3p0c

>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134	Back alignment and structure

>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154	Back alignment and structure

>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128	Back alignment and structure

>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Length = 143	Back alignment and structure

>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Length = 140	Back alignment and structure

>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A Length = 121	Back alignment and structure

>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A Length = 141	Back alignment and structure

>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 Length = 117	Back alignment and structure

>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} Length = 149	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Length = 162	Back alignment and structure

>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A Length = 156	Back alignment and structure

>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Length = 128	Back alignment and structure

>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115	Back alignment and structure

>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 146	Back alignment and structure

>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} Length = 127	Back alignment and structure

>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Length = 138	Back alignment and structure

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366	Back alignment and structure

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386	Back alignment and structure

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1142
1xte_A		154	Serine/threonine-protein kinase SGK3; CISK, PX dom	99.79
3iq2_A		138	Sorting nexin-7; SNX7, PHOX, protein signalling, S	99.77
3p0c_A		130	Nischarin; structural genomics, structural genomic	99.77
1ocs_A		162	Sorting nexin GRD19; sorting protein, PX-domain, y	99.76
2csk_A		146	Sorting nexin 12; SNX12, PX domain, structural gen	99.75
4az9_A		129	Sorting nexin-24; protein transport; 1.75A {Homo s	99.74
2v14_A		134	Kinesin-like motor protein C20ORF23; plus-END kine	99.73
3lui_A		115	Sorting nexin-17, SNX17; PX domain, endosome, phos	99.72
2i4k_A		128	Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al	99.72
2ar5_A		121	Phosphoinositide 3-kinase; PX domain, transferase;	99.71
1kmd_A		117	VAM7P, vacuolar morphogenesis protein VAM7; PX dom	99.7
1h6h_A		143	Neutrophil cytosol factor 4; PX domain; HET: PIB;	99.69
2ett_A		128	Sorting nexin-22; PX domain, BC019655, SNX22_human	99.69
1kq6_A		141	NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha	99.65
3dyt_A		366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	99.62
2iwl_X		140	Phosphatidylinositol-4-phosphate 3-kinase C2 domai	99.62
4akv_A		386	Sorting nexin-33; transport protein, organelle bio	99.6
3hpc_X		161	SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph	99.57
2l73_A		149	NADPH oxidase organizer 1; cell membrane, PX domai	99.52
2v6v_A		156	BUD emergence protein 1; homotypic fusion, regulat	99.48
2dyb_A		341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.29
2wwe_A		127	Phosphoinositide-3-kinase, class 2, gamma polypept	99.24
2ct0_A		74	Non-SMC element 1 homolog; ring domain, structural	88.53
3nw0_A		238	Non-structural maintenance of chromosomes element	87.61

>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A	Back alignment and structure

Probab=99.79  E-value=1e-19  Score=180.22  Aligned_cols=95  Identities=29%  Similarity=0.506  Sum_probs=87.3

Q ss_pred             cccccEEEEEEEEeCCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccC-CCCHHHHHHHHHHHHHH
Q 001141          680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFG-NVSPLVVAHRSVLIQEC  758 (1142)
Q Consensus       680 GvksYTVY~I~Vksg~~eWtV~RRYSDF~~LHqrLke~fp~~~l~LP~~p~sV~K~PKKlfG-n~speFIEeRRk~LE~Y  758 (1142)
                      |.+.||+|.|+|+.+...|+|+|||+||.+||++|++.||...++||         +|+++| +++++|||+||++||.|
T Consensus        21 ~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP---------~K~~~g~~~~~~~ie~Rr~~Le~y   91 (154)
T 1xte_A           21 KKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIP---------AKRIFGDNFDPDFIKQRRAGLNEF   91 (154)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCC---------CSCCSSCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHHCCCCcccCC---------CccccCCCCCHHHHHHHHHHHHHH
Confidence            56799999999999989999999999999999999999988766788         599999 89999999999999999


Q ss_pred             HHHHHhcCCCCCCccccccccccccc
Q 001141          759 LQSILHSSSFSSPPNALITFLSQQES  784 (1142)
Q Consensus       759 Lq~LL~h~~~Ls~S~vL~eFLe~s~s  784 (1142)
                      |+.|+.| +.++.+..|+.||+....
T Consensus        92 L~~l~~~-p~l~~s~~l~~FL~~~~~  116 (154)
T 1xte_A           92 IQNLVRY-PELYNHPDVRAFLQMDSP  116 (154)
T ss_dssp             HHHHTTC-HHHHTSHHHHHHTTTTCG
T ss_pred             HHHHHcC-hhhccChHHHHHhCCCCC
Confidence            9999997 467889999999998765

PyMOL of 1xte

>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}	Back alignment and structure

>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}	Back alignment and structure

>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*	Back alignment and structure

>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}	Back alignment and structure

>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}	Back alignment and structure

>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A	Back alignment and structure

>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}	Back alignment and structure

>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A	Back alignment and structure

>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1	Back alignment and structure

>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1	Back alignment and structure

>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}	Back alignment and structure

>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A	Back alignment and structure

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*	Back alignment and structure

>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}	Back alignment and structure

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}	Back alignment and structure

>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A	Back alignment and structure

>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}	Back alignment and structure

>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A	Back alignment and structure

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}	Back alignment and structure

>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}	Back alignment and structure

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1142
d1h6ha_		143	d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo	2e-13
d1xtea_		116	d.189.1.1 (A:) Serine/threonine-protein kinase Sgk	2e-13
d1kmda_		117	d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces	1e-11
d1kq6a_		140	d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo	2e-11
d1ocsa_		132	d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast	4e-11

>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: p40phox NADPH oxidase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 2e-13
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 2/106 (1%)

Query: 680 GVKEYTVYKIRV-WSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRK 738
           G   + V+ I V   G  ++ + RRYR F+ L  +L+     +  S      ++     K
Sbjct: 33  GFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAC-TLPTLPAK 91

Query: 739 IFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQES 784
           ++  V   +   R   +   ++S+L    +      +  F  Q   
Sbjct: 92  VYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPY 137

PyMOL of d1h6ha_

>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116	Back information, alignment and structure

>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117	Back information, alignment and structure

>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 140	Back information, alignment and structure

>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 132	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1142
d1ocsa_		132	Sorting nexin grd19 {Baker's yeast (Saccharomyces	99.75
d1xtea_		116	Serine/threonine-protein kinase Sgk3, Cisk {Mouse	99.73
d1h6ha_		143	p40phox NADPH oxidase {Human (Homo sapiens) [TaxId	99.66
d1kq6a_		140	p47phox NADPH oxidase {Human (Homo sapiens) [TaxId	99.62
d1kmda_		117	Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T	99.62
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	80.21

>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Sorting nexin grd19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=5.5e-19  Score=167.51  Aligned_cols=117  Identities=20%  Similarity=0.221  Sum_probs=88.5

Q ss_pred             cccceEEEeccccccCCcccccceecccccEEEEEEEEeC-----CceEEEEeecccHHHHHHHHHhhcccCCC---CCC
Q 001141          655 LRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW---SLP  726 (1142)
Q Consensus       655 ~~Id~VEVv~~kqk~G~vS~servvGvksYTVY~I~Vksg-----~~eWtV~RRYSDF~~LHqrLke~fp~~~l---~LP  726 (1142)
                      .....|.|..+.++.++     ...|.+.||+|+|++++.     ...|.|+|||+||.+||+.|.+.|+....   ++|
T Consensus         4 ~~~~~i~V~dP~~~~~~-----~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~p   78 (132)
T d1ocsa_           4 ENFLEIEVHNPKTHIPN-----GMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVP   78 (132)
T ss_dssp             SCCEEEEEEEEEEECCC-----STTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCC
T ss_pred             CCeEEEEEcCCcEeecC-----CCCCccCeEEEEEEEEecCCCCCCceEEEEeeHHHHHHHHHHHHHhcccccCcccccC
Confidence            33446777777654332     123678999999999874     57899999999999999999999876532   333


Q ss_pred             CCCccccccccccc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 001141          727 SPWSSVEKESRKIF-GNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ  782 (1142)
Q Consensus       727 ~~p~sV~K~PKKlf-Gn~speFIEeRRk~LE~YLq~LL~h~~~Ls~S~vL~eFLe~s  782 (1142)
                      +.+      +|+++ ++++++||++||++||.||+.|++|+.+.+.+++|+.||+.+
T Consensus        79 ~~p------~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FLe~~  129 (132)
T d1ocsa_          79 HLP------GKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE  129 (132)
T ss_dssp             CCT------TCCCSSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred             CCc------ccccccccCCHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhcCCcc
Confidence            222      45555 468999999999999999999999854334578899999864

PyMOL of d1ocsa_

>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure