Citrus Sinensis ID: 001147

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140

MHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM

ccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcc

ccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccEEcccHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccHHHccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHEEcccHHHcccccccHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHEEcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcc

MHVNPAAAEATILglcqspqpykaCQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMqhasspegyVQAKISSVAAQLMKRgwldftssdkeAFFSQVHQAVLGIHGVDTQFIGINFLESLvsefspstssamglprefHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWdfqfdtsgrkiSINVFSAgvrtetssskrseciivqpgpawcDALISSGHIVWLLNLYSALRQKfssegywldcpiAVSARKLIVQLCSltgtvfpsdngkmqEHHLLQLLSGilewvdppdVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLksirpfgtltLLSNLMCEVVKVLMMNnteegtwswEARDILLDTWTTLLVSLDstgrnvvlpLEVRNAAASLFALIVESELKVAsasamddngefnYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLhqgrgmidpteTLEELYSLLLITGhvladegegeipvvpnaiQTHFVDTIEAAKHPVVLLCGSIIKFaewsldpearasvfsPRLMEAIVWFLARWSQTylmpleefrdsstnlchdtgyqhqssTSRKALLSFFgehnqgkpvlDIIVRISMTtlvsypgekdlqELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYgmrnsessnqYVRDLTRHATAYLVELSgkndlknvsqqpdIILLVSCLLERLrgaanateprtQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMtqsscllgeaktEKYKDLRALFQLLSNLCskdlvdfssdsiEAQAINISQVVFFGLHIvtplmsgdllkypklCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTldfglhhqdSEIVDMCLRALRALASYhyketgagkvGLAAQAaginnsngnpeeGVLSRFLRSLLQLLLfedyspdmvgtaadALFPLILCEPRLYQRLGSELierqanppfkSRLANALQSLtssnqlsstlDRVNYQRFRKNLTNFLVEVRGFLRTM

MHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGvrtetssskrsecIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSgkndlknvsqQPDIILLVSCLLERLRgaanateprtqKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSltssnqlsstldrVNYQRFRKNLTNFLVEVRGFLRTM

MHVNPAAAEATILGLCQSPQPYKACQFILENSQVanarfqaaaairdaamrEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPtetleelyslllitGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVlsrflrsllqlllfEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANAlqsltssnqlsstlDRVNYQRFRKNLTNFLVEVRGFLRTM

*********ATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF*********LPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVR*********ECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAI********MLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGY********KALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGM*******QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGI********EGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELI****************************LDRVNYQRFRKNLTNFLVEVRGFL***

***NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTS**MGLPREFHEQCRISLELDYLKTFYCWARDAALSV**************KACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVAS******NGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLH*******PTETLEELYSLLLITGHVLADEGEGEIPVVPN***********AAKHPVVLLCGSIIKFAEW*************RLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDT***H**STSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDL*****QPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGA**************SNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQA*****SRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM

********EATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSE*********GLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAG**********SECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDT*********RKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRTM

*****AAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLRT*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1140	2.2.26 [Sep-21-2011]
Q499Y0		1150	Exportin-4 OS=Xenopus lae	N/A	no	0.902	0.894	0.262	9e-93
Q9ESJ0		1151	Exportin-4 OS=Mus musculu	yes	no	0.902	0.894	0.261	1e-90
Q9C0E2		1151	Exportin-4 OS=Homo sapien	yes	no	0.900	0.892	0.263	5e-90
Q802D3		1150	Exportin-4 OS=Danio rerio	yes	no	0.904	0.896	0.256	2e-89
Q5ZMR9		1154	Exportin-4 OS=Gallus gall	yes	no	0.900	0.889	0.260	1e-88
Q54UP5		1133	Exportin-4 OS=Dictyosteli	yes	no	0.914	0.920	0.222	2e-47
Q704U0		1087	Exportin-7-A OS=Xenopus l	N/A	no	0.293	0.308	0.233	1e-08
Q569Z2		1087	Exportin-7-B OS=Xenopus l	N/A	no	0.293	0.308	0.233	1e-08
Q9UIA9		1087	Exportin-7 OS=Homo sapien	no	no	0.298	0.312	0.228	3e-08
Q5R9G4		1087	Exportin-7 OS=Pongo abeli	no	no	0.298	0.312	0.228	3e-08

>sp\|Q499Y0\|XPO4_XENLA Exportin-4 OS=Xenopus laevis GN=xpo4 PE=2 SV=1	Back alignment and function desciption

 Score =  342 bits (878), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 319/1213 (26%), Positives = 562/1213 (46%), Gaps = 184/1213 (15%)

Query: 8    AEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 67
            AE   L   +S  P+  C+ ILE S+V    FQAA AI +A +REW  L     +SL  F
Sbjct: 36   AEHVFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKSSIESLRTF 95

Query: 68   CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQ 127
             L +V+Q  +  + YV+ +I    A ++KRG LD  S D ++ F +V Q +   +    Q
Sbjct: 96   LLTYVLQRPNL-QKYVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQLISSCNPT-MQ 152

Query: 128  FIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQI 186
             +  + L +L+ EFS S+ +S +GL  EFH  C+   + + L+  +    +     +++ 
Sbjct: 153  TLACSILTALLIEFSSSSKTSNIGLSMEFHGSCKRVFQDEDLRRIFMLTIEVLQEFSRR- 211

Query: 187  IESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECII 246
               +  A         L L +Q+L+W+F     GR   I +F +           S+ ++
Sbjct: 212  --ENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMFES-----------SQNVM 257

Query: 247  VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTV 306
            ++P  +W + L++S  +     ++  +R+         D  +A  + + + QL SL G +
Sbjct: 258  LKPTESWRETLLNSRVMELFFTVHRKIRE---------DSDMAQDSLQCLAQLASLHGPI 308

Query: 307  FPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPF 366
            FP +  + Q  +L   + G+L  ++        IE   SE+  +        I+ + T  
Sbjct: 309  FPDE--RSQVDYLAHFIEGLLSTIN-------GIEIEDSEAVGISNI-----ISNLIT-- 352

Query: 367  VFDRLLKSIRP---FGT-LTLLSNLMCEVVKVLMMNNT--EEGTWSWEARDILLDTWTTL 420
            VF R + +  P   F + +  L++L C   +   +     ++     EA D LL++W TL
Sbjct: 353  VFPRNILTAIPSDLFSSFVNCLTHLTCSFGRSAALEEVLDKDDMVYMEAYDKLLESWLTL 412

Query: 421  LVSLDSTGR-----------------NVVLPLEVRNAAASLFALIVESELKVASASAMDD 463
            +       +                 ++  P   RN  A+  A     E +  +    DD
Sbjct: 413  VQDDQHFHKGFFTQHAVQVFNSYIQCHLAAPDGTRNLTANGVA---SREEEEINEIQEDD 469

Query: 464  NGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLH------------ 511
               F+          ++L+S  ++ R A D  +PLLT L  ER  RLH            
Sbjct: 470  RDLFS----------DQLASVGMLGRIASDHCIPLLTSLLEERVTRLHGQLQRHQQQLLA 519

Query: 512  -QGRGMIDPTETLEELYS----LLLITGHVLADEGEGEIPVVPNAI------QTHFVD-- 558
              G   ID  + L++LY     L+L+TG++LAD+ +GE P++P+ I      Q+  VD  
Sbjct: 520  SPGADSID-NKVLDDLYEDIHWLILVTGYLLADDTQGETPLIPSEIMEYSIKQSTEVDIN 578

Query: 559  -TIEAAKHP---------------VVLLCGSIIKFAEWSLDPEARAS------VFSPRLM 596
             T++    P               V+ L  ++++ +E     E+RA+      + SP++ 
Sbjct: 579  TTLQILGSPGEKASSIPGCNRTDSVIRLVSAVLRASE----VESRATRADLTHLLSPQMG 634

Query: 597  EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVL 655
            + IVWFL RW++TYL+  E+  D   +L  +T                FG   +G   ++
Sbjct: 635  KDIVWFLKRWTKTYLLVDEKLYDQ-ISLPFNTA---------------FGADTEGCHWII 678

Query: 656  DIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFAN-DK 714
              ++   ++ L  +  E++L   T  QLL  LV R+     ++   +W  LA  FA    
Sbjct: 679  GYLLEKVISNLSVWSSEQELANETV-QLLVTLVERRERANLVIQCENWWNLAKQFAQRSP 737

Query: 715  TLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQ 774
             L  L+S+ QR+L + LVL  +   +S++  QY  ++ +      + +  + + + + Q+
Sbjct: 738  PLNFLSSSVQRTLMKALVLGGFAHMDSDTKQQYWTEVLQPLQQRFLNVINQENFQQICQE 797

Query: 775  PDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKF 834
             ++   ++  LE L G A AT+      ++      +   + L+EVYK+    V L+++ 
Sbjct: 798  EEVKQEITATLEALCGIAEATQIDNVAILFNFLMDFLTNCIGLMEVYKNNPETVNLIIEV 857

Query: 835  VVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLR 894
             V+    QI YL   +   + + C  LLQ+YS +N+G+  +  +      A+ ++Y+DL 
Sbjct: 858  FVEVAHKQICYLGESKAMNLYEACLTLLQVYSKNNLGRKRIDVT------AEEDQYQDLL 911

Query: 895  ALFQLLSNLCSKDLVDFS-SDSI-----EAQAIN----ISQVVFFGLHIVTPLMSGDLLK 944
             + +LL+NL SK+ +DFS +D +       QA N     + VV +G++IV PLMS DLLK
Sbjct: 912  LIMELLTNLLSKEFIDFSDTDEVFRPHEPGQATNRPVSAADVVLYGVNIVLPLMSQDLLK 971

Query: 945  YPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRAL 1004
            +P LC+ Y+ L++ + E++PE +  L  + F  ++ +L+ G+    SE+  +CL AL  L
Sbjct: 972  FPSLCNQYYKLITFICEIFPEKIPLLPEDLFKSLMYSLELGMTSMSSEVSQLCLEALTPL 1031

Query: 1005 ASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAAD 1064
            A                Q A   +++ +P    +  FL+ +  +L+ + ++ +M   A +
Sbjct: 1032 AE---------------QCAKAQDTD-SPLLAAMRHFLKLVFDMLVLQKHNTEMTTAAGE 1075

Query: 1065 ALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRK 1124
            A + L+      Y  L   L+  Q +P    RLA+A   LT+S+    TLDR     F K
Sbjct: 1076 AFYTLVCLNQAEYAELVETLLSSQQDPLIYQRLADAFNKLTASST-PPTLDRKQKMSFLK 1134

Query: 1125 NLTNFLVEVRGFL 1137
            +L  F+  V G L
Sbjct: 1135 SLEEFMGNVGGLL 1147

Mediates the nuclear export of proteins (cargos) with broad substrate specificity.
Xenopus laevis (taxid: 8355)

>sp\|Q9ESJ0\|XPO4_MOUSE Exportin-4 OS=Mus musculus GN=Xpo4 PE=1 SV=2	Back alignment and function description

>sp\|Q9C0E2\|XPO4_HUMAN Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2	Back alignment and function description

>sp\|Q802D3\|XPO4_DANRE Exportin-4 OS=Danio rerio GN=xpo4 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZMR9\|XPO4_CHICK Exportin-4 OS=Gallus gallus GN=XPO4 PE=2 SV=1	Back alignment and function description

>sp\|Q54UP5\|XPO4_DICDI Exportin-4 OS=Dictyostelium discoideum GN=xpo4 PE=3 SV=1	Back alignment and function description

>sp\|Q704U0\|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1	Back alignment and function description

>sp\|Q569Z2\|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1	Back alignment and function description

>sp\|Q9UIA9\|XPO7_HUMAN Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3	Back alignment and function description

>sp\|Q5R9G4\|XPO7_PONAB Exportin-7 OS=Pongo abelii GN=XPO7 PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1140
302143624		1176	unnamed protein product [Vitis vinifera]	0.991	0.960	0.771	0.0
255561939		1165	protein with unknown function [Ricinus c	0.989	0.968	0.752	0.0
297828948		1123	hypothetical protein ARALYDRAFT_317312 [	0.971	0.985	0.714	0.0
359488084		1123	PREDICTED: exportin-4-like [Vitis vinife	0.952	0.967	0.732	0.0
334185076		1118	uncharacterized protein [Arabidopsis tha	0.947	0.966	0.678	0.0
356571192		1117	PREDICTED: exportin-4-like [Glycine max]	0.953	0.973	0.674	0.0
356504127		1117	PREDICTED: exportin-4-like [Glycine max]	0.953	0.973	0.680	0.0
449449573		1121	PREDICTED: exportin-4-like [Cucumis sati	0.954	0.970	0.677	0.0
242039377		1165	hypothetical protein SORBIDRAFT_01g01933	0.992	0.971	0.55	0.0
357146625		1160	PREDICTED: exportin-4-like [Brachypodium	0.985	0.968	0.542	0.0

>gi\|302143624\|emb\|CBI22377.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1735 bits (4493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 885/1147 (77%), Positives = 990/1147 (86%), Gaps = 17/1147 (1%)

Query: 1    MHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADE 60
            MHVNPAAAEATIL LCQSPQPY+ACQFILENSQVANARFQAAAAIRDAA+REW  LT+D+
Sbjct: 40   MHVNPAAAEATILSLCQSPQPYQACQFILENSQVANARFQAAAAIRDAAIREWGLLTSDD 99

Query: 61   KKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLG 120
            KKSLI FCLCFVMQHASSPEGYVQ+K+SSVAAQLMKRGWLDF +++KEAF  +V QAVLG
Sbjct: 100  KKSLISFCLCFVMQHASSPEGYVQSKVSSVAAQLMKRGWLDFAAAEKEAFMYEVKQAVLG 159

Query: 121  IHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAAL 180
            +HGVD QF GINFLESLVSEFSPSTS+AMGLPREFHEQC   LEL+YLKTFYCWA+DAA+
Sbjct: 160  VHGVDVQFTGINFLESLVSEFSPSTSTAMGLPREFHEQCLKLLELEYLKTFYCWAQDAAV 219

Query: 181  SVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTS---GRKISINVFSAGVRTETS 237
            SVT +IIES +A  EVK CTAALRL+ QILNWDF+++T+   G K S++ F+ GVR + +
Sbjct: 220  SVTSRIIESHSAVPEVKVCTAALRLMLQILNWDFRYNTNMAKGAKPSMDAFNDGVRHDIA 279

Query: 238  SSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIV 297
            S KRSECI+VQPGP+W D LIS+GHI WLL LY ALRQKFS EGYWLDCP+AVSARKLIV
Sbjct: 280  SPKRSECILVQPGPSWRDVLISNGHIGWLLGLYGALRQKFSCEGYWLDCPVAVSARKLIV 339

Query: 298  QLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALL 357
            Q CSLTGT+FPS N  MQEHHLLQLLSGI+ W+DPP  V+QAIE GKSESEMLDGCRALL
Sbjct: 340  QFCSLTGTIFPSAN--MQEHHLLQLLSGIIPWIDPPHAVSQAIECGKSESEMLDGCRALL 397

Query: 358  SIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTW 417
            S+ATVTTP VFD+LLKS+ PFGTLTLLS LMCEV+KVLM  NTEE TWSW ARDILLDTW
Sbjct: 398  SMATVTTPTVFDQLLKSVSPFGTLTLLSTLMCEVIKVLMATNTEEETWSWMARDILLDTW 457

Query: 418  TTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAM 477
            TTLL+  +    N   P E  NAAA+LFALIVE+EL+ ASASA +D+ +  YLQASISAM
Sbjct: 458  TTLLIVCE----NARFPSEGINAAANLFALIVEAELRAASASAFNDDEDSQYLQASISAM 513

Query: 478  DERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVL 537
            DERLSSYALIARAAID  +PLLTRLF+ERFARLHQG+G+ DPTETLEELYSLLLITGHVL
Sbjct: 514  DERLSSYALIARAAIDVAIPLLTRLFTERFARLHQGKGITDPTETLEELYSLLLITGHVL 573

Query: 538  ADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLME 597
            ADEGEGE P VP AIQTHFVD +E  KHPVV+L  +II+FAE SLD E R SVFSPRLME
Sbjct: 574  ADEGEGETPSVPMAIQTHFVDIVETHKHPVVVLSSTIIRFAEQSLDQEMRTSVFSPRLME 633

Query: 598  AIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQS----STSRKALLSFFGEHNQGKP 653
            A++WFLARWS TYLM  EE R+ + N    +GY H+S      SRKALLSFFG++NQGKP
Sbjct: 634  AVIWFLARWSSTYLMVPEECREDNCN----SGYDHESWLRSQHSRKALLSFFGQYNQGKP 689

Query: 654  VLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFAND 713
            VLD+IVRISM TL+SYPGEKDLQ LTC QLLH+LVRRKNVC HLVA  SWRELA+AFAN 
Sbjct: 690  VLDVIVRISMMTLISYPGEKDLQALTCYQLLHSLVRRKNVCTHLVAFDSWRELANAFANG 749

Query: 714  KTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQ 773
            +TL  L+ST+QRSLAQTLVLSA GMRN E+SNQYVRDLT H TAYLVE+S KNDLKN SQ
Sbjct: 750  RTLFSLHSTHQRSLAQTLVLSASGMRNPEASNQYVRDLTSHMTAYLVEMSNKNDLKNFSQ 809

Query: 774  QPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLK 833
            QPDIIL VSCLLERLRGAA A EPRTQKAIYEMGFSVMN VL+LLEVYKHE AVVYLLLK
Sbjct: 810  QPDIILSVSCLLERLRGAARALEPRTQKAIYEMGFSVMNSVLVLLEVYKHEFAVVYLLLK 869

Query: 834  FVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDL 893
            FVVDWVDG+I YLE QET IV+DFC RLLQLYSSHNIGK+ ++ SS LL EAKTE YKDL
Sbjct: 870  FVVDWVDGEIIYLEAQETAIVVDFCMRLLQLYSSHNIGKISVSLSSSLLSEAKTEMYKDL 929

Query: 894  RALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYF 953
            RAL QL++NLCSKD+VDFSSDSIE    +ISQVV+FGLHIVTPL+S DLLKYPKLCHDYF
Sbjct: 930  RALLQLIANLCSKDMVDFSSDSIETPGTSISQVVYFGLHIVTPLISLDLLKYPKLCHDYF 989

Query: 954  SLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETG 1013
            SLLSH+LEVYPE VAQL++EAFAHVLGTLDFGLHHQD+E+VDMCL+ L+ALASYHYKET 
Sbjct: 990  SLLSHMLEVYPEMVAQLNSEAFAHVLGTLDFGLHHQDTEVVDMCLKVLKALASYHYKETS 1049

Query: 1014 AGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCE 1073
             GK+GL + A+G  +S+G  +EG+LSRFLRSLLQLLLFEDYS D+VG AADALFPLILCE
Sbjct: 1050 IGKIGLGSHASGFKDSDGKFQEGILSRFLRSLLQLLLFEDYSTDLVGIAADALFPLILCE 1109

Query: 1074 PRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEV 1133
              +YQRLG EL + QANP  KSRL NALQSLTSSNQLS TLDR+NY+RFRKNL +FL+EV
Sbjct: 1110 QGVYQRLGQELADSQANPTLKSRLVNALQSLTSSNQLSPTLDRINYKRFRKNLHSFLIEV 1169

Query: 1134 RGFLRTM 1140
             GFLRTM
Sbjct: 1170 HGFLRTM 1176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255561939\|ref\|XP_002521978.1\| protein with unknown function [Ricinus communis] gi\|223538782\|gb\|EEF40382.1\| protein with unknown function [Ricinus communis]	Back alignment and taxonomy information

>gi\|297828948\|ref\|XP_002882356.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata] gi\|297328196\|gb\|EFH58615.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|359488084\|ref\|XP_002266608.2\| PREDICTED: exportin-4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|334185076\|ref\|NP_187099.6\| uncharacterized protein [Arabidopsis thaliana] gi\|332640567\|gb\|AEE74088.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356571192\|ref\|XP_003553763.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|356504127\|ref\|XP_003520850.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|449449573\|ref\|XP_004142539.1\| PREDICTED: exportin-4-like [Cucumis sativus] gi\|449479730\|ref\|XP_004155691.1\| PREDICTED: exportin-4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|242039377\|ref\|XP_002467083.1\| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor] gi\|241920937\|gb\|EER94081.1\| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|357146625\|ref\|XP_003574058.1\| PREDICTED: exportin-4-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1140
RGD\|1312015		1152	Xpo4 "exportin 4" [Rattus norv	0.551	0.546	0.257	3.7e-70
UNIPROTKB\|F1P157		1146	XPO4 "Exportin-4" [Gallus gall	0.550	0.547	0.255	9e-68
UNIPROTKB\|Q5ZMR9		1154	XPO4 "Exportin-4" [Gallus gall	0.550	0.544	0.255	1.5e-67
UNIPROTKB\|Q9C0E2		1151	XPO4 "Exportin-4" [Homo sapien	0.392	0.388	0.287	1.7e-67
UNIPROTKB\|E2QUP6		1151	XPO4 "Uncharacterized protein"	0.392	0.388	0.285	2.8e-67
UNIPROTKB\|F1MVW4		1153	XPO4 "Uncharacterized protein"	0.4	0.395	0.279	5.5e-65
MGI\|MGI:1888526		1151	Xpo4 "exportin 4" [Mus musculu	0.571	0.566	0.253	5.2e-61
ZFIN\|ZDB-GENE-030131-3062		1152	xpo4 "exportin 4" [Danio rerio	0.572	0.566	0.257	4.8e-59
UNIPROTKB\|F1RVA6		1002	XPO4 "Uncharacterized protein"	0.392	0.446	0.287	1.9e-58
DICTYBASE\|DDB_G0280907		1133	xpo4 "exportin 4" [Dictyosteli	0.399	0.401	0.209	4.1e-30

RGD\|1312015 Xpo4 "exportin 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

 Score = 511 (184.9 bits), Expect = 3.7e-70, Sum P(3) = 3.7e-70
 Identities = 181/704 (25%), Positives = 318/704 (45%)

Query:   479 ERLSSYALIARAAIDATVPLLTRLFSERFARLH------QGRGMIDPXXXXXXXXXXXXX 532
             ++L+S  ++ R A +  +PLLT L  ER  RLH      Q + +  P             
Sbjct:   476 DQLASVGMLGRIAAEHCMPLLTSLLEERVTRLHGQLQRHQQQLLASPGSSTIDNKMLDDL 535

Query:   533 ----------XGHVLADEGEGEIPVVPNAIQTHFVD-TIEAAKHPVVLLCGSIIKFAEWS 581
                        G++LAD+ +GE P++P  I  + +  + E   +  + + GS  + A  S
Sbjct:   536 YEDIHWLILVTGYLLADDTQGETPLIPPEIMEYSIKHSSEVDINTTLQILGSPGEKAS-S 594

Query:   582 LDPEARA-SVFSPRLMEAIVWF------LARWSQTYLMPLEEFRD--------SSTNLCH 626
             +   +R  SV   RL+ A++          R   T+L+  +  +D        + T L  
Sbjct:   595 IPGYSRTDSVI--RLLSAVLRVSEVESRAIRADLTHLLSPQMGKDIVWFLKRWAKTYLLV 652

Query:   627 DTGYQHQSSTSRKALLSFFGEHNQGKP-VLDIIVRISMTTLVSYPGEKDLQELTCNQLLH 685
             D     Q S     L + FG   +G   ++  +++  ++ L  +  E+DL   T  QLL 
Sbjct:   653 DEKLYDQISLP---LSTAFGADTEGSQWIIGYLLQKVISNLSVWSSEQDLANDTV-QLLV 708

Query:   686 ALVRRKNVCVHLVA-LGSWRELASAFAN-DKTLILLNSTNQRSLAQTLVLSAYGMRNSES 743
              LV R+    +LV    +W  LA  FA+    L  L+S  QR+L + LVL  +   ++E+
Sbjct:   709 TLVERRERRANLVIQCENWWNLAKQFASRSPPLNYLSSPVQRTLMKALVLGGFAHMDTET 768

Query:   744 SNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAI 803
               QY  ++ +      + +  + + + + QQ ++   ++  LE L G A AT+      +
Sbjct:   769 KQQYWTEVLQPLQQRFLRVINQENFQQMCQQEEVKQEITATLEALCGIAEATQIDNVAIL 828

Query:   804 YEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQ 863
             +      +N  + L+EVYK+    V L+++  V+    QI YL       + + C  LLQ
Sbjct:   829 FNFLMDFLNNCIGLMEVYKNTPETVNLIIEVFVEVAHKQICYLGESRAMHLYEACLTLLQ 888

Query:   864 LYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFS-SDSI------ 916
             +YS +N+G+  +  +      A+ E+Y+DL  + +LL+NL SK+ +DFS +D +      
Sbjct:   889 VYSKNNLGRQRIDVT------AEEEQYQDLLLIMELLTNLLSKEFIDFSDTDEVFRGHEP 942

Query:   917 ---EAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTE 973
                  ++++ + VV +G++++ PLMS DLLK+P LC+ Y+ L++ + E++PE + QL  +
Sbjct:   943 GQAAGRSVSAADVVLYGVNLILPLMSQDLLKFPTLCNQYYKLITFICEIFPEKIPQLPED 1002

Query:   974 AFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNP 1033
              F  ++ +L+ G+    SE+  +CL AL  LA                Q A    +  +P
Sbjct:  1003 LFKSLMYSLELGMTSMSSEVCQLCLEALTPLAE---------------QCAKAQETE-SP 1046

Query:  1034 EEGVXXXXXXXXXXXXXXEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPF 1093
                               + ++ +M   A +A + L+      Y  L   L+  Q +P  
Sbjct:  1047 LFLATRHFLKLVFDMLVLQKHNTEMTTAAGEAFYTLVCLHQAEYSELVETLLSSQQDPII 1106

Query:  1094 KSRLANAXXXXXXXXXXXXXXDRVNYQRFRKNLTNFLVEVRGFL 1137
               RLA+A              DR     F K+L  F+  V G L
Sbjct:  1107 YQRLADAFNKLTASSTPPTL-DRKQKMAFLKSLEEFMANVGGLL 1149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0046827 "positive regulation of protein export from nucleus" evidence=ISO

UNIPROTKB\|F1P157 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZMR9 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9C0E2 XPO4 "Exportin-4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QUP6 XPO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MVW4 XPO4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1888526 Xpo4 "exportin 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3062 xpo4 "exportin 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVA6 XPO4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0280907 xpo4 "exportin 4" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1140
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.97
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	99.86
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	99.85
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	99.7
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	99.39
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.24
KOG2081		559	consensus Nuclear transport regulator [Intracellul	99.13
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.99
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.79
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.67
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.47
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	97.73
COG5656		970	SXM1 Importin, protein involved in nuclear import	97.4
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	97.14
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	96.63
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	95.93
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	95.82

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.1e-147  Score=1217.83  Aligned_cols=1019  Identities=19%  Similarity=0.283  Sum_probs=884.6

Q ss_pred             CCChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCCChh
Q 001147            2 HVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEG   81 (1140)
Q Consensus         2 ~~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~   81 (1140)
                      |.+|++||+.|.+|..+|+++++|+.+|++++.||.++.|++.|.+.+.+. +.+|.++|.+||+|+++|+..++|.+++
T Consensus        20 ~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrldir~Yilnylat~~Pk~~~   98 (1082)
T KOG1410|consen   20 PTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLDIRNYILNYLATGAPKLAP   98 (1082)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHhcCCCCccc
Confidence            578999999999999999999999999999999999999999999999988 4699999999999999999998899999


Q ss_pred             HHHHHHHHHHHHHhHhccccCCCCc--hhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHHHH
Q 001147           82 YVQAKISSVAAQLMKRGWLDFTSSD--KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC  159 (1140)
Q Consensus        82 ~v~~~l~~~~a~i~K~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~k~  159 (1140)
                      ||...++|++|+|+|.||+|..+.+  -.+.+.++.++++. ++.+|+++|+.||+.+++||+..   +.+.+..+|||.
T Consensus        99 fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~-~~ve~~~igv~iLsqLvqemN~~---~~~~p~tkHRki  174 (1082)
T KOG1410|consen   99 FVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQM-DNVEHCIIGVQILSQLVQEMNQA---DGMDPSTKHRKI  174 (1082)
T ss_pred             HHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhCC---CCCCcchHHHHH
Confidence            9999999999999999999965422  13577788888874 46899999999999999999998   668999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccCC
Q 001147          160 RISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSS  239 (1140)
Q Consensus       160 ~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~  239 (1140)
                      ..+|||+.|.+||.+++.+|+........   ......++.++|++..+||+|||+|+..||+                 
T Consensus       175 as~FRD~sL~~vf~laln~L~~~~~~nln---d~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs-----------------  234 (1082)
T KOG1410|consen  175 ASSFRDDSLFDVFSLALNLLKDNVDLNLN---DRAQLGLLMQVLKLNLNCLNFDFIGSSTDES-----------------  234 (1082)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHhcccCcc---cHhHhhHHHHHHHHHhhhccccccccccccc-----------------
Confidence            99999999999999999999876521111   1113579999999999999999999999987                 


Q ss_pred             CccccccccCCccchHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHHHHH
Q 001147          240 KRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHL  319 (1140)
Q Consensus       240 ~~~~~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~yl  319 (1140)
                       +||..++++|.+||..+.|++++++||++|..++           |+++..++.||+|+||+|+++|++.+   |.+|+
T Consensus       235 -sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp-----------~~~S~~alsclvqlASvRRsLFN~ae---Ra~yl  299 (1082)
T KOG1410|consen  235 -SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLP-----------PELSELALSCLVQLASVRRSLFNGAE---RAKYL  299 (1082)
T ss_pred             -cccccceecCcHHHHHhcCchHHHHHHHHhccCC-----------chhhHHHHHHHHHHHHHHHHHhCCHH---HHHHH
Confidence             8999999999999999999999999999999865           45899999999999999999997766   89999


Q ss_pred             HHHHHhhhhhcCChhHHHHHhhhCC-ChhhHHHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHHH---HHH
Q 001147          320 LQLLSGILEWVDPPDVVAQAIESGK-SESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVV---KVL  395 (1140)
Q Consensus       320 ~~~l~~~~~~l~~~~~~~~~~~~g~-~~~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~---~~~  395 (1140)
                      .++++|+..++++|.        |+ |+.+||||||+|.|+++|+             |.+++.+++. |.+++   ..+
T Consensus       300 ~~Lv~Gvk~il~np~--------~LsD~~nyHeFCRllaRlktNY-------------QL~ELv~v~~-Y~e~irLiAeF  357 (1082)
T KOG1410|consen  300 QHLVEGVKRILENPQ--------GLSDPANYHEFCRLLARLKTNY-------------QLGELVKVEC-YPEVIRLIAEF  357 (1082)
T ss_pred             HHHHHHHHHHHhCCc--------CCCCcchHHHHHHHHHHHHhhh-------------hhHhhhccCC-cHHHHHHHHHH
Confidence            999999999998754        55 5699999999999997775             5566655555 55554   445


Q ss_pred             hhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccccCCCCccchhhccHH
Q 001147          396 MMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASIS  475 (1140)
Q Consensus       396 ~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~yi~srl~~~~~~~~~e~d~~e~~~~d~~  475 (1140)
                      +..+...|+|+.+|.+++|.+|.+|+.++||+  +...|+.+..++++|..+||.+|+...+...  .|+ -|+|.||..
T Consensus       358 Tv~SLq~wefa~nSvyyLlt~WqRmvaSVPyv--k~~~phlLd~y~PeIt~afi~SRl~sV~~iv--rd~-~d~PLdd~~  432 (1082)
T KOG1410|consen  358 TVTSLQHWEFAPNSVYYLLTLWQRMVASVPYV--KNTEPHLLDTYCPEITKAFITSRLQSVEIIV--RDG-LDDPLDDTG  432 (1082)
T ss_pred             HHHHHHhhhcccchhHHHHHHHHHHHhcCCcc--cCCChHHHhhhcHHHHHHHHHHHhhhhheec--ccC-CCCcchhhH
Confidence            56677889999999999999999999999996  4567888889999999999999999876543  322 456777788


Q ss_pred             HHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcc--cCCCCC--chhHH-HHHHHHHHHhhHhccCCCCCccCChh
Q 001147          476 AMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG--RGMIDP--TETLE-ELYSLLLITGHVLADEGEGEIPVVPN  550 (1140)
Q Consensus       476 ~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~--~~~~~~--~~~~E-~L~Wli~i~g~~l~~~~~ge~~~ip~  550 (1140)
                      ...++++.++++||+.|+.|+.+|.++|++..+.|.+.  +++.++  ....| +|.|+|+++|.++++...+-      
T Consensus       433 ~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~------  506 (1082)
T KOG1410|consen  433 AVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTAT------  506 (1082)
T ss_pred             HHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceeccc------
Confidence            88999999999999999999999999999999988764  233332  34455 99999999999998885331      


Q ss_pred             hHhhhhhhhhcccCch--HHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhcCccccccccCCCcCCCC
Q 001147          551 AIQTHFVDTIEAAKHP--VVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDT  628 (1140)
Q Consensus       551 ~i~~~~~~~~~~~~~~--~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~  628 (1140)
                                +.+++.  --+++..++++... .|+. -+.....+++.+++||+.+|+++|++   |..          
T Consensus       507 ----------Std~~d~mDgEL~arvlql~nl-mdsr-~~~~~n~rle~ail~f~eqFRk~Yvg---DQ~----------  561 (1082)
T KOG1410|consen  507 ----------STDEHDAMDGELSARVLQLVNL-MDSR-LPLKGNERLELAILHFLEQFRKAYVG---DQI----------  561 (1082)
T ss_pred             ----------ccchhhhhhhHHHHHHHHHHHh-hhcc-cchhhhHHHHHHHHHHHHHHHHHHHH---HHH----------
Confidence                      112222  12555555554332 1111 11225678999999999999999998   544          


Q ss_pred             CccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhccchHHHHHH
Q 001147          629 GYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELAS  708 (1140)
Q Consensus       629 ~~~~~s~~v~~~l~~~f~~~~~g~~~l~~~l~~i~~~l~~~~~e~~vi~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~  708 (1140)
                        + .+++|+..+.+.+|. ++...+++.++.||.+||++|+..++|++.++ .||..|+.+++..++++++|.++.+++
T Consensus       562 --~-rsSkvY~rl~e~Lgi-~de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-slf~dLs~GY~~~kkL~kl~~Vqfmln  636 (1082)
T KOG1410|consen  562 --Q-RSSKVYARLSEVLGI-TDESDVLGVIVGKILTNLKYWGRNEPVISLTL-SLFNDLSLGYSAVKKLVKLDAVQFMLN  636 (1082)
T ss_pred             --H-HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhcccccCCchHHHHHH-HHHHHHhhhHHHHHHHhcchhhhhHhc
Confidence              3 356799999999997 67789999999999999999999999999999 899999999999999999999999999


Q ss_pred             Hhhchhhhhcccc------hhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHH
Q 001147          709 AFANDKTLILLNS------TNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVS  782 (1140)
Q Consensus       709 ~~~~~~~~~~l~~------~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~i~  782 (1140)
                      +|+++++++.-+.      ..|++||.++++++.  .|..+.+..|+++|.|++..|..+++..+.+ ...+++++..++
T Consensus       637 NHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~--~d~sede~~fe~fm~PLt~~fe~v~~~~~nn-~f~ee~vK~~li  713 (1082)
T KOG1410|consen  637 NHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLM--VDLSEDEDMFERFMLPLTDAFEGVLQVFQNN-CFEEEQVKRILI  713 (1082)
T ss_pred             ccchhhCcccccCccchhhhhHhHHHHHHHHHHh--hcccccHHHHHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHH
Confidence            9999988765443      246789999999875  3455667889999999999999888754322 356688999999


Q ss_pred             HHHHHhhhhhhccCCC-cHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcccccccc----chhhhHHH
Q 001147          783 CLLERLRGAANATEPR-TQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEV----QETNIVID  856 (1140)
Q Consensus       783 ~ll~~l~Gi~~a~~~~-~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~~l~~----~~~~~Lf~  856 (1140)
                      |++||+||||.|..++ ++.++|+|+||. +|++...++.|.++|++++|||||++|+++|+.+|+.|    ++|+.|||
T Consensus       714 GL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFr  793 (1082)
T KOG1410|consen  714 GLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFR  793 (1082)
T ss_pred             HHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEeh
Confidence            9999999999999977 789999999999 99999999999999999999999999999999999988    57899999


Q ss_pred             HHHHHHHHhhhcccCccccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCC-ccchhhhhchhHHHhhhhhccc
Q 001147          857 FCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSS-DSIEAQAINISQVVFFGLHIVT  935 (1140)
Q Consensus       857 ~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~-~~~~d~~~~~~~v~~~~l~~~l  935 (1140)
                      +.++++..|+.+     ++..++..+...|++|||+|.+++.+|+++++|+|+|||+ ++|||++++.+...|.+|.+.|
T Consensus       794 EtSKmv~~YG~r-----iL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fvKm~lsI  868 (1082)
T KOG1410|consen  794 ETSKMVSIYGNR-----ILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQTFVKMLLSI  868 (1082)
T ss_pred             hhhHHHHHHhhH-----hhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHHHHHHHhcC
Confidence            999999999754     4555555677899999999999999999999999999999 9999999999999999999999


Q ss_pred             cccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCC
Q 001147          936 PLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAG 1015 (1140)
Q Consensus       936 Pli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~ 1015 (1140)
                      |.  .|+++|||+.++||.|++.+++.|+.++.+|+++.|..++.+|..|+++.|+-|+..||.++|++++|++++..++
T Consensus       869 p~--sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~tYlfk~itr~  946 (1082)
T KOG1410|consen  869 PH--SDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVTYLFKRITRS  946 (1082)
T ss_pred             CH--HHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence            99  9999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CccchhhhhccCCCC----CCCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 001147         1016 KVGLAAQAAGINNSN----GNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANP 1091 (1140)
Q Consensus      1016 ~~~~~~~~~~~~~~~----~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~ 1091 (1140)
                      .+......+++++..    .+++|++++++++.++++++|++|.+||  ++|||+++||+.++++|..+..+++++|| +
T Consensus       947 ~~p~~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQW--SlSRPlLgLILi~E~~fSdlk~~l~ssQp-~ 1023 (1082)
T KOG1410|consen  947 TKPTRKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQW--SLSRPLLGLILINEKYFSDLKASLTSSQP-Y 1023 (1082)
T ss_pred             CCCcCcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccc--cccchhhHHHhhhHHHHHHHHHHHhcCCC-c
Confidence            443222112222211    2678999999999999999999999998  99999999999999999999999999998 7


Q ss_pred             hhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhccc
Q 001147         1092 PFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGFLR 1138 (1140)
Q Consensus      1092 ~~~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~l~ 1138 (1140)
                      ++++++..+|.+||.+  ++.|++.||||+|++|+..|+++++..|+
T Consensus      1024 dkqq~l~~cF~~LM~~--ve~nL~~KNrD~FTQNLt~FRrdv~~~lk 1068 (1082)
T KOG1410|consen 1024 DKQQDLDMCFTNLMEG--VERNLTVKNRDRFTQNLTRFRRDVALVLK 1068 (1082)
T ss_pred             chhHHHHHHHHHHHHH--HhhcccccchhHHHHHHHHHHHHHHHHhc
Confidence            9999999999999997  56899999999999999999999987665

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1140
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-08
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	1e-04
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	1e-07
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	2e-04
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	3e-07
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-06
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-04
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	2e-06
2x1g_F		971	Cadmus; transport protein, developmental protein,	4e-06
2x1g_F		971	Cadmus; transport protein, developmental protein,	7e-04
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 82.2 bits (202), Expect = 7e-16
 Identities = 116/704 (16%), Positives = 196/704 (27%), Gaps = 217/704 (30%)

Query: 238 SSKRSECIIVQPGPAWCDALISSGHIVWLLNLY-SALRQKFSSEG----Y-WLDCPIAVS 291
           S +  + II+       DA+  +  + W L      + QKF  E     Y +L  PI   
Sbjct: 47  SKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 292 AR-------KLIVQLCSL--TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIE- 341
            R         I Q   L     VF   N    + +L +L   +LE     +V+   +  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLG 160

Query: 342 SGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGT--LTLLSNLMCEVVKVLMMNN 399
           SGK+    LD C                  ++    F    L L  N       + M+  
Sbjct: 161 SGKT-WVALDVCL--------------SYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQK 204

Query: 400 TEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLE-VRNAAASLF-------ALIVES 451
                        LL        S      N+ L +  ++     L         L+V  
Sbjct: 205 -------------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-- 249

Query: 452 ELKVASASAMDD--NGEFNYLQASISAMDERLSSYALIA---RAAIDATVPLLTRLFSER 506
                    + +  N +      + +A +  LS   L+    +   D      T   S  
Sbjct: 250 ---------LLNVQNAK------AWNAFN--LSCKILLTTRFKQVTDFLSAATTTHIS-- 290

Query: 507 FARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAK-H 565
              L      + P E    L    L       D    ++P              E    +
Sbjct: 291 ---LDHHSMTLTPDEVKS-LLLKYL-------DCRPQDLPR-------------EVLTTN 326

Query: 566 PVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLC 625
           P  L   SII  AE   D  A              W    W       L    +SS    
Sbjct: 327 PRRL---SII--AESIRDGLAT-------------W--DNWKHVNCDKLTTIIESS---- 362

Query: 626 HDTGYQHQSSTSRKAL---LSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQ 682
                        + +   LS F               I    L     +    +     
Sbjct: 363 ----LNVLEPAEYRKMFDRLSVFPPS----------AHIPTILLSLIWFDVIKSD--VMV 406

Query: 683 LLHALVRRKNVCVHLVALGSWRELASAFANDKTL-ILLNSTNQRSLAQTLVLSAYGMRNS 741
           +++ L +       LV      + ++       L + +   N+ +L +++V   Y +  +
Sbjct: 407 VVNKLHKYS-----LVE--KQPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKT 458

Query: 742 ESSNQYVRD---------LTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAA 792
             S+  +           +  H     +E   +  L        + L    L +++R  +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTL-----FRMVFLDFRFLEQKIRHDS 511

Query: 793 NATEPRTQKAIYEMGFSVMNPVLLLLEVYK--------HESAVVYLLLKFVVDWVDGQIS 844
            A              S++N  L  L+ YK            +V  +L F          
Sbjct: 512 TAWNASG---------SILN-TLQQLKFYKPYICDNDPKYERLVNAILDF---------- 551

Query: 845 YLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTE 888
            L   E N++    T LL++         LM +   +  EA  +
Sbjct: 552 -LPKIEENLICSKYTDLLRI--------ALMAEDEAIFEEAHKQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Length = 321	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1140
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.95
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	99.87
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.77
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.53
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.41
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.08
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.64
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	91.39

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

Probab=100.00  E-value=5.8e-63  Score=630.22  Aligned_cols=915  Identities=14%  Similarity=0.167  Sum_probs=659.5

Q ss_pred             CChHHHHHHHHhhccCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHhcCCC----
Q 001147            3 VNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASS----   78 (1140)
Q Consensus         3 ~~r~~Ae~~l~~f~~~~~~~~~c~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~----   78 (1140)
                      ++|++|+++|.+|+++|++|..|..||+.|++++++|||+++|++.|.++|..+|+++|.+||+++++|+.+...+    
T Consensus        43 ~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~  122 (1073)
T 3gjx_A           43 AQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCV  122 (1073)
T ss_dssp             HHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGG
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCcccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999874322    


Q ss_pred             -ChhHHHHHHHHHHHHHhHhccccCCCCchhHHHHHHHHHhcccCChhhHHHHHHHHHHHHhhhCCCCCCCCCCcHHHHH
Q 001147           79 -PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHE  157 (1140)
Q Consensus        79 -~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~lL~~lv~efs~~~ss~~~~~~~~h~  157 (1140)
                       .++.+++|+++++|.|+|++|++    .|++++.++.+.+.+  ++.++.+++.+|..+.+|....+++  .++..+..
T Consensus       123 e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~d~~~~--~l~~~r~~  194 (1073)
T 3gjx_A          123 EKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT--SESLCQNNMVILKLLSEEVFDFSSG--QITQVKAK  194 (1073)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHTTSHHH--HBCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHhcccc--cccHHHHH
Confidence             24677899999999999999998    689999999999874  7788999999999999996543111  24556677


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCcccccccccccccccc
Q 001147          158 QCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETS  237 (1140)
Q Consensus       158 k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~  237 (1140)
                      +.+..+++. ++.|+.++..+|++.           .+..++..+|+++..+++|...+.                    
T Consensus       195 ~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~~--------------------  242 (1073)
T 3gjx_A          195 HLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLGY--------------------  242 (1073)
T ss_dssp             HHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH--------------------
T ss_pred             HHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHHH--------------------
Confidence            888889976 999999887777532           245788899999999999998765                    


Q ss_pred             CCCccccccccCCccchHHhhccchHHHHH-HHHHHhhhcccCCCCCCCchhhHHHHHHHHHHHhcccCccCCCChhhHH
Q 001147          238 SSKRSECIIVQPGPAWCDALISSGHIVWLL-NLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQE  316 (1140)
Q Consensus       238 ~~~~~~~~~~~~p~~W~~~l~~~~~l~llf-~~y~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~  316 (1140)
                                         +.+++++++++ .+   +.          +++++..|++||.++.+.+.+   + ....-.
T Consensus       243 -------------------i~~~~ll~~L~~~~---L~----------~~~~r~aA~dcL~eIv~k~~~---~-~~~~~~  286 (1073)
T 3gjx_A          243 -------------------IFETKLISTLIYKF---LN----------VPMFRNVSLKCLTEIAGVSVS---Q-YEEQFE  286 (1073)
T ss_dssp             -------------------HHSSSHHHHHHHHT---SS----------SHHHHHHHHHHHHHHHHSCSG---G-GHHHHH
T ss_pred             -------------------hccchHHHHHHHHh---cC----------ChHHHHHHHHHHHHHHhcccc---c-hHHHHH
Confidence                               66778888774 32   21          367999999999999987522   1 111223


Q ss_pred             HHHHHHHHhhhhhcCChhHHHHHhhhCCCh--hhHHHHHHHHHHHHhccChhhHHhhhhccCcchhHHHHHHHHHHHHHH
Q 001147          317 HHLLQLLSGILEWVDPPDVVAQAIESGKSE--SEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKV  394 (1140)
Q Consensus       317 ~yl~~~l~~~~~~l~~~~~~~~~~~~g~~~--~~~~e~c~~l~~l~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~  394 (1140)
                      ..+..++..+..++.....+.+++..|.++  +.+..+|+++..+..+|.     .++.....  +...+.. ..+.+-.
T Consensus       287 ~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-----~lIe~~p~--~~~~l~~-~l~~ll~  358 (1073)
T 3gjx_A          287 TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-----QLLEKRLN--LREALME-ALHYMLL  358 (1073)
T ss_dssp             HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-----HHHHHCGG--GHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-----HHHhcCcc--chHHHHH-HHHHHHH
Confidence            455566666667776655677777766432  445567888877776653     22211111  0111111 1111111


Q ss_pred             HhhcccccccchHHHHHHHHHHHHHhhhccc----ccCCCC---------CCChhhhhhHHHHHH---HHHhcccccccc
Q 001147          395 LMMNNTEEGTWSWEARDILLDTWTTLLVSLD----STGRNV---------VLPLEVRNAAASLFA---LIVESELKVASA  458 (1140)
Q Consensus       395 ~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~----~~~~~~---------~~~~~~~~~~~~i~~---~yi~srl~~~~~  458 (1140)
                      .   +..++   .|.+++++++|+.|...+-    +..+..         ..+.. .+.-..+|.   ..+.+||++|++
T Consensus       359 ~---s~~~d---~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~e  431 (1073)
T 3gjx_A          359 V---SEVEE---TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEE  431 (1073)
T ss_dssp             H---TTCSC---HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCC
T ss_pred             H---hCCCc---HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCcc
Confidence            1   11223   7999999999999987651    100000         01211 111123443   336799999998


Q ss_pred             cccCCCCccch--h----hccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHH
Q 001147          459 SAMDDNGEFNY--L----QASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLI  532 (1140)
Q Consensus       459 ~~~~e~d~~e~--~----~~d~~~~~~ql~~i~~l~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli~i  532 (1140)
                      +..+|+|++|.  +    -++...|+.+.+++.+++++++.++...+.+.+.+..      +++.|+|..+|.++|+++.
T Consensus       432 v~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~------~~~~~sW~~lea~~~aiga  505 (1073)
T 3gjx_A          432 VLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQV------NGTEWSWKNLNTLCWAIGS  505 (1073)
T ss_dssp             EEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH------TSCCCCHHHHHHHHHHHHH
T ss_pred             ccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh------cCCCCCHHHHhHHHHHHHH
Confidence            76555555553  1    2356799999999999999999999999888887642      3456778999999999985


Q ss_pred             H-hhHhccCCCCCccCChhhHhhhhhhhhcccCchHHHHHHHHHHHHHhhcCcccccccCCHHHHHHHHHHHHHHHhhhc
Q 001147          533 T-GHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYL  611 (1140)
Q Consensus       533 ~-g~~l~~~~~ge~~~ip~~i~~~~~~~~~~~~~~~v~li~~ll~l~~~~l~~~~~~~~~sp~l~~~~l~fl~~~~~~YL  611 (1140)
                      + |++.                      .+.+...++.++..|+++++...+++.+     +.++.+++|.+|||++ |+
T Consensus       506 Iag~~~----------------------~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k-----~~vas~i~~vlgrY~~-wl  557 (1073)
T 3gjx_A          506 ISGAMH----------------------EEDEKRFLVTVIKDLLGLCEQKRGKDNK-----AIIASNIMYIVGQYPR-FL  557 (1073)
T ss_dssp             TTTSSC----------------------HHHHHHHHHHHHHHHHHHHHHSCSHHHH-----HHHHHHHHHHHHHCHH-HH
T ss_pred             HHCcCC----------------------cccccchHHHHHHHHhcccccccccchh-----HHHHHHHHHHHhhhHH-HH
Confidence            4 5442                      0112234678899999999876655554     3488999999999986 88


Q ss_pred             CccccccccCCCcCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHhhccCCCC-----chhHHHHHHHHHH
Q 001147          612 MPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPG-----EKDLQELTCNQLL  684 (1140)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~s~~v~~~l~~~f~~~~~g--~~~l~~~l~~i~~~l~~~~~-----e~~vi~~~~~~LL  684 (1140)
                          ..+            +++++++...+++++++.++|  .+++++|.+.+..|-.++..     ..+.+        
T Consensus       558 ----~~h------------~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i--------  613 (1073)
T 3gjx_A          558 ----RAH------------WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFI--------  613 (1073)
T ss_dssp             ----HHC------------HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHH--------
T ss_pred             ----HhC------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHH--------
Confidence                444            677889999999999988888  68899999999988776522     22333        


Q ss_pred             HHHhhccccchhhhccchHHHHHHHhhchhhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhC
Q 001147          685 HALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSG  764 (1140)
Q Consensus       685 ~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~  764 (1140)
                                         ..+++.+..  ....++++....||+++|.+++..++...+..+++.+|.|+.+.|+++++
T Consensus       614 -------------------~~il~~~~~--~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~  672 (1073)
T 3gjx_A          614 -------------------DEILNNINT--IICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQ  672 (1073)
T ss_dssp             -------------------HHHHTSHHH--HHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence                               333333211  13346788888999999999998777666788999999999999999996


Q ss_pred             CCc-ccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc
Q 001147          765 KND-LKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQ  842 (1140)
Q Consensus       765 ~~~-~~~~~~~~~ii~~i~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~  842 (1140)
                      +.. ..+...+++.+..+..+++++..+|.+.+..        |.++ .+++++++++|..+++.+.       +.+...
T Consensus       673 ~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~--------f~~~~~~i~~~~l~~y~~~s~~i~-------~~v~~~  737 (1073)
T 3gjx_A          673 QATKNVDILKDPETVKQLGSILKTNVRACKAVGHP--------FVIQLGRIYLDMLNVYKCLSENIS-------AAIQAN  737 (1073)
T ss_dssp             HHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred             HhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh--------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhC
Confidence            432 2235567777889999999999999999876        3333 6677889999988877653       455444


Q ss_pred             cccccc-c---hhhhHHHHHHHHHHHhhhcccC--------------ccccccccccccchhhhhhhhHHHHHHHHHHhh
Q 001147          843 ISYLEV-Q---ETNIVIDFCTRLLQLYSSHNIG--------------KMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLC  904 (1140)
Q Consensus       843 ~~~l~~-~---~~~~Lf~~~~~ll~~y~~~~~~--------------~~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l  904 (1140)
                      +..... +   ..+.+.+++++++++|......              ..+.+|+...+...+.+.+..+..+++-+.+.+
T Consensus       738 g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~  817 (1073)
T 3gjx_A          738 GEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI  817 (1073)
T ss_dssp             CGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGT
T ss_pred             CchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhc
Confidence            433322 1   2477889999999999875421              113567766777788888887777777776655


Q ss_pred             cCCCcccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHh
Q 001147          905 SKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDF  984 (1140)
Q Consensus       905 ~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~ff~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~  984 (1140)
                      .++.            ..+.+   .-+++++.||++|+.+||+++..||+|+..+++.||..+.++|++.|+.+++|+.|
T Consensus       818 ~~~~------------~~il~---~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~w  882 (1073)
T 3gjx_A          818 TAEI------------PQIFD---AVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIW  882 (1073)
T ss_dssp             GGGH------------HHHHH---HHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHH
T ss_pred             chhH------------HHHHH---HHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Confidence            5432            22333   55699999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchh----------hhhc-cCCCCC-CCchhHHHHHHHHHHHHHHhc
Q 001147          985 GLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAA----------QAAG-INNSNG-NPEEGVLSRFLRSLLQLLLFE 1052 (1140)
Q Consensus       985 Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~-~~~~~ll~~ll~~l~~~~l~~ 1052 (1140)
                      |++|..++|++.+++++.++...+.+.......++..          .++| ..|.++ ..|..++.+++.++.+..+..
T Consensus       883 a~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~  962 (1073)
T 3gjx_A          883 AFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKIST  962 (1073)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSC
T ss_pred             HcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCCccc
Confidence            9999999999999999988887654311111111111          1234 555543 344555555555554432222


Q ss_pred             cCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHH
Q 001147         1053 DYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ-ANPPFKSRLANALQSLTSSNQLSSTLDRVNYQRFRKNLTNFLV 1131 (1140)
Q Consensus      1053 ~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q-~~~~~~~~l~~af~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~ 1131 (1140)
                      +....      .+     -.|+++.++|+.+++.+. | ...++++..+...|++.        .++..+|+.+++||++
T Consensus       963 ~l~~~------~~-----~~n~~~~~~~~~~~l~~~fp-~~~~~qi~~fv~~l~~~--------~~d~~~f~~~lrDFli 1022 (1073)
T 3gjx_A          963 PLNPG------NP-----VNNQMFIQDYVANLLKSAFP-HLQDAQVKLFVTGLFSL--------NQDIPAFKEHLRDFLV 1022 (1073)
T ss_dssp             SSSCT------TT-----TCHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHH
T ss_pred             ccccc------CC-----CccHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHH
Confidence            22110      00     047889999999988655 6 37789999999999873        4688999999999999


Q ss_pred             Hchhcc
Q 001147         1132 EVRGFL 1137 (1140)
Q Consensus      1132 ~vr~~l 1137 (1140)
                      ++|+|=
T Consensus      1023 ~~ke~~ 1028 (1073)
T 3gjx_A         1023 QIKEFA 1028 (1073)
T ss_dssp             HHTSCC
T ss_pred             HHHHHc
Confidence            999873

PyMOL of 3gjx

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1140
d1w9ca_		321	a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Ho	1e-25
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.004

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Length = 321	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (267), Expect = 1e-25
 Identities = 42/298 (14%), Positives = 92/298 (30%), Gaps = 50/298 (16%)

Query: 860  RLLQLYSSHN-----IGKMLMTQSSCLLGEAKTEKYKDLR--ALFQLLSNLCSKDLVDFS 912
            +L+  + S +     + +  +      +           R   +   ++ + +K      
Sbjct: 51   KLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKL----- 105

Query: 913  SDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLST 972
               I A+   I   VF        +++ D  +YP+   ++F LL  +          +  
Sbjct: 106  GGHITAEIPQIFDAVFE---CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP 162

Query: 973  EAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGN 1032
              F  VL ++ +   H    + D  L+ L  L     +E  A +                
Sbjct: 163  TQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQT----------- 211

Query: 1033 PEEGVLSRFLRSLLQLLL------FEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIE 1086
                    +   +LQ +              M  +    +F L+  E        +    
Sbjct: 212  --------YFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLV--EEGKISTSLNPGNP 261

Query: 1087 RQANPPFKSRLANALQSLT---SSNQLSSTL-----DRVNYQRFRKNLTNFLVEVRGF 1136
                   +  +AN L+S        Q+   +        +   F+++L +FLV+++ F
Sbjct: 262  VNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEF 319

PyMOL of d1w9ca_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1140
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	99.88
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.41
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.15
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.11
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.52
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	91.93

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5e-22  Score=216.19  Aligned_cols=285  Identities=15%  Similarity=0.207  Sum_probs=206.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcccccccc-c--h-hhhHHHHHHHHHHHhhhcccCc--------------
Q 001147          811 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEV-Q--E-TNIVIDFCTRLLQLYSSHNIGK--------------  872 (1140)
Q Consensus       811 ~~~~~~ll~~y~~~~~v~~~iL~l~~e~v~~~~~~l~~-~--~-~~~Lf~~~~~ll~~y~~~~~~~--------------  872 (1140)
                      ..++.+++++|+.+++.+.       +.+...|..... +  + -+.+.|++++++++|.+++...              
T Consensus         5 ~~i~~dml~~Y~~~S~~I~-------~~i~~~G~~~~k~~~vr~lr~iKkeiLkLi~t~i~~~~d~~~v~~~~i~pl~~~   77 (321)
T d1w9ca_           5 GRIYLDMLNVYKCLSENIS-------AAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDA   77 (321)
T ss_dssp             GGGHHHHHHHHHHHHHHHH-------HHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHhCChHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            4578899999999998866       445544544333 2  2 3778899999999999775322              


Q ss_pred             cccccccccccchhhhhhhhHHHHHHHHHHhhcCCCcccCCccchhhhhchhHHHhhhhhccccccccccccchhhhHHH
Q 001147          873 MLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDY  952 (1140)
Q Consensus       873 ~~~~~~~~~~~~~~~e~~k~l~~ll~lL~~~l~~~~~nfg~~~~~d~~~~~~~v~~~~l~~~lPli~~dll~yPkl~~~f  952 (1140)
                      ...+|+.+.+..++.|.+..+..+++-+.+.+....            ..+.+.+   ++++++||++|+.+||++|..|
T Consensus        78 vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v------------~~I~~~V---Fe~Tl~MI~~df~~yPehR~~f  142 (321)
T d1w9ca_          78 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEI------------PQIFDAV---FECTLNMINKDFEEYPEHRTNF  142 (321)
T ss_dssp             HHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGH------------HHHHHHH---HHHHHHHHSSTTTCSHHHHHHH
T ss_pred             HHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHH------------HHHHHHH---HHHHHHHHhccchhChHHHHHH
Confidence            135677777888888888877666666655544332            3344544   4999999999999999999999


Q ss_pred             HHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhh----------
Q 001147          953 FSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQ---------- 1022 (1140)
Q Consensus       953 f~Ll~~l~e~~~~~l~~l~~~~f~~l~~sl~~Gl~~~d~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~---------- 1022 (1140)
                      |+|++.+++.||+.+.++|+++|+.+++++.||++|++++|+..||+++..+...+.+....++.++...          
T Consensus       143 f~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~  222 (321)
T d1w9ca_         143 FLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFS  222 (321)
T ss_dssp             HHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987765332222222211          


Q ss_pred             hhc-cCCCCC-CCchhHHHHHHHHHHHHHHhccCCCchHHHhhhhHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 001147         1023 AAG-INNSNG-NPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANA 1100 (1140)
Q Consensus      1023 ~~~-~~~~~~-~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~~l~~a 1100 (1140)
                      ++| ..|.++ ..|..++.++++++.+..+..+....      ..     ..|+++.++++.+++.+..+....+++...
T Consensus       223 vltD~~Hk~gf~~q~~iL~~Lf~ive~~~i~~~l~~~------~~-----~~n~~~l~e~l~~lL~~~Fp~l~~~qi~~f  291 (321)
T d1w9ca_         223 VVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPG------NP-----VNNQIFLQEYVANLLKSAFPHLQDAQVKLF  291 (321)
T ss_dssp             HHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSS------SC-----CCHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred             HHHChhHHHHHHHHHHHHHHHHHHHHccccccccccc------cc-----cchHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            233 444443 33344444444444322222111110      00     245778889999988775324677888888


Q ss_pred             HHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHchhc
Q 001147         1101 LQSLTSSNQLSSTLDRVNYQRFRKNLTNFLVEVRGF 1136 (1140)
Q Consensus      1101 f~~L~~~~~~~~~~~~~nr~~F~~~l~~F~~~vr~~ 1136 (1140)
                      ...|++.        +.++.+|++++++|++++|+|
T Consensus       292 v~~Lf~~--------~~d~~~Fk~~lrDFLI~~kef  319 (321)
T d1w9ca_         292 VTGLFSL--------NQDIPAFKEHLRDFLVQIKEF  319 (321)
T ss_dssp             HHHHHHT--------TTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHc--------cCCHHHHHHHHHHHhHHhhhc
Confidence            8999873        578999999999999999997

PyMOL of d1w9ca_

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure