Citrus Sinensis ID: 001153
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1137 | 2.2.26 [Sep-21-2011] | |||||||
| Q7TPQ3 | 1674 | E3 ubiquitin-protein liga | yes | no | 0.368 | 0.250 | 0.391 | 2e-86 | |
| Q149N8 | 1683 | E3 ubiquitin-protein liga | yes | no | 0.368 | 0.248 | 0.391 | 2e-86 | |
| Q9FNI6 | 1029 | Putative SWI/SNF-related | no | no | 0.213 | 0.236 | 0.317 | 5e-35 | |
| Q9FIY7 | 1277 | Putative SWI/SNF-related | no | no | 0.226 | 0.202 | 0.313 | 1e-32 | |
| Q6PCN7 | 1003 | Helicase-like transcripti | no | no | 0.248 | 0.281 | 0.307 | 7e-31 | |
| Q9UTL9 | 1375 | Uncharacterized ATP-depen | yes | no | 0.281 | 0.232 | 0.307 | 7e-29 | |
| Q9FF61 | 881 | Putative SWI/SNF-related | no | no | 0.239 | 0.308 | 0.295 | 9e-28 | |
| Q95216 | 1005 | Helicase-like transcripti | no | no | 0.215 | 0.243 | 0.307 | 1e-27 | |
| Q14527 | 1009 | Helicase-like transcripti | no | no | 0.209 | 0.235 | 0.3 | 7e-27 | |
| Q4PGG5 | 1387 | DNA repair protein RAD5 O | N/A | no | 0.364 | 0.299 | 0.244 | 3e-26 |
| >sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1 | Back alignment and function desciption |
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Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 250/472 (52%), Gaps = 53/472 (11%)
Query: 413 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 471
R ECICG + K + VQC C WQHA CV Y + K + +
Sbjct: 649 RFECICGEFDQIGHKPR---VQCLKCHLWQHAKCVNYEEKNLKVKPFY------------ 693
Query: 472 NIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIY 531
C C +E PV+T ATLI+ P+ I QW EI RH R SL+ +Y
Sbjct: 694 ----------CPHCLVAME----PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVY 739
Query: 532 EGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPV 589
+G + L DIV+ TYDVL+ +L++ + H D R +R QKRY
Sbjct: 740 QGVKKHGFLQPHF-----LAEQDIVIITYDVLRSELNYVNIPHSNSEDGRRLRNQKRYMA 794
Query: 590 IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649
IP+ L + WWRICLDEAQMVE A EMA RL +RWCI+GTP+QR L+DL+GL+
Sbjct: 795 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854
Query: 650 FLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 709
FL P+ + WWI ++ PY + + + F +IM RS+K V D++Q+PPQ E
Sbjct: 855 FLGIEPYCVKHWWIRLLYHPYCKKNP---QHLYSFIAKIMWRSAKKDVIDQIQIPPQTEE 911
Query: 710 VSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA 769
+ WL FSP+E HFY QHE C A ++++ D LK + +
Sbjct: 912 MHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSS-------------LDRRTV 958
Query: 770 AKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMAL 829
+ +L LL+LRQACCHPQ LQ+S ++M+E+L L K E EEA R+LV AL
Sbjct: 959 SSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1018
Query: 830 NGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 881
NGLAGI +I+ + A LY+E + EEH + D L +H HNL E+L
Sbjct: 1019 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1070
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E3 ubiquitin-protein ligase involved in DNA repair. Upon genotoxic stress, accepts ubiquitin from the UBE2N-UBE2V2 E2 complex and transfers it to 'Lys-164' of PCNA which had been monoubiquitinated by UBE2A/B-RAD18, promoting the formation of non-canonical poly-ubiquitin chains linked through 'Lys-63'. Mus musculus (taxid: 10090) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 | Back alignment and function description |
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| >sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RAD5 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1137 | ||||||
| 224127888 | 1320 | chromatin remodeling complex subunit [Po | 0.986 | 0.85 | 0.677 | 0.0 | |
| 359486454 | 1704 | PREDICTED: E3 ubiquitin-protein ligase S | 0.980 | 0.654 | 0.655 | 0.0 | |
| 297736470 | 1717 | unnamed protein product [Vitis vinifera] | 0.965 | 0.639 | 0.618 | 0.0 | |
| 449499151 | 1520 | PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu | 0.992 | 0.742 | 0.605 | 0.0 | |
| 449441236 | 1520 | PREDICTED: E3 ubiquitin-protein ligase S | 0.992 | 0.742 | 0.605 | 0.0 | |
| 240254615 | 1664 | RING-finger, DEAD-like helicase, PHD and | 0.969 | 0.662 | 0.591 | 0.0 | |
| 357490295 | 1764 | ATP-dependent helicase, putative [Medica | 0.980 | 0.632 | 0.583 | 0.0 | |
| 297827713 | 1635 | SNF2 domain-containing protein [Arabidop | 0.943 | 0.656 | 0.584 | 0.0 | |
| 356500801 | 1600 | PREDICTED: E3 ubiquitin-protein ligase S | 0.927 | 0.658 | 0.594 | 0.0 | |
| 222637695 | 1663 | hypothetical protein OsJ_25598 [Oryza sa | 0.956 | 0.653 | 0.484 | 0.0 |
| >gi|224127888|ref|XP_002329202.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222870983|gb|EEF08114.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1588 bits (4113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/1138 (67%), Positives = 913/1138 (80%), Gaps = 16/1138 (1%)
Query: 1 MGRRKQSRPHRSGGVTLENNNTTES--ESNKQKPHGSEQPEKEELADVD-HPFFVEVNRT 57
MGRRKQ+RPHRSGG+ ++NN + E Q+ S + EL +D P+FVEV R
Sbjct: 1 MGRRKQARPHRSGGLIIQNNAAASASAELKNQRKASSSDAQPTELVGIDEQPYFVEVERN 60
Query: 58 CWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNE-FIGRIKLGH 116
W + H D SE+VL L LR+E+S F +++ FY S+Y+LR V +V + + RIKLGH
Sbjct: 61 SWASNHHRDASELVLHGLNLRQEYSSFRVTDGFYHDSKYSLRFRVSNVKQSVLSRIKLGH 120
Query: 117 WPLLSSNDVTLEFVEKCM-EEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLG 175
WP+ SS+D++LE +EK M EE+ E ++ SGSFD PDEGITGLVHL +MEFLTLRP LG
Sbjct: 121 WPVFSSSDISLELIEKSMVEEDREVESVIFSGSFDGPDEGITGLVHLTNMEFLTLRPVLG 180
Query: 176 ITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVS 235
+ FSE M+ LR+RVEIL+ AFDACESLLE++R+ WKKSM+NVM+WLRPEV+TSEARY +
Sbjct: 181 VDFSEKMTPLRMRVEILEKAFDACESLLESTRQIWKKSMMNVMAWLRPEVMTSEARYRHA 240
Query: 236 KSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQR 295
KS EM+V + +D S S K A FDVA YEAIK SK++PMLE+DLPDLLP LRPYQR
Sbjct: 241 KSTEMEVNMAAEIGDDTSNSGKRAQFDVAGLYEAIKPSKSDPMLEDDLPDLLPTLRPYQR 300
Query: 296 RAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSS 355
RAA+WMVQ+EKG+S SS +ERSQFFSPLCMP+DFLDT S +FYNPFSG++S P+++
Sbjct: 301 RAAHWMVQQEKGES--SSVKERSQFFSPLCMPVDFLDTCSKMFYNPFSGNVSFHPEFSPP 358
Query: 356 YVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVE 415
YV GGILADEMGLGKTVELLACI AHRK SDD + Q T +QK+NL+RLKRERVE
Sbjct: 359 YVSGGILADEMGLGKTVELLACILAHRKSTSDDGSVVAPTWQNTGNQKINLKRLKRERVE 418
Query: 416 CICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVV 475
C+CGAVS+S KY+GLWVQCDICDAWQHADCVGYSPRGKK+ S + +KH R K + V
Sbjct: 419 CVCGAVSDSYKYRGLWVQCDICDAWQHADCVGYSPRGKKKMSVDDEQKH-RNKTTISYVE 477
Query: 476 RDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 535
RDGEH+CQ C ELIE D+P+ATGATLIVCPAPIL QW +EITRHTRPGSLKT +YEG R
Sbjct: 478 RDGEHVCQMCSELIEVADTPIATGATLIVCPAPILPQWHSEITRHTRPGSLKTYVYEGVR 537
Query: 536 NSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLT 595
++SLS+T ++DI +LV ADIVLTTYDVLKEDL HDSDRH GDR +RFQKRYPV PT+LT
Sbjct: 538 DTSLSNTFVVDIGQLVNADIVLTTYDVLKEDLLHDSDRHGGDRHILRFQKRYPVTPTILT 597
Query: 596 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655
RIFWWR+CLDEAQMVESNAAAATEMALRL KHRWCITGTPIQRKLDDLYGLLRFLK+SP
Sbjct: 598 RIFWWRVCLDEAQMVESNAAAATEMALRLSTKHRWCITGTPIQRKLDDLYGLLRFLKASP 657
Query: 656 FSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTF 715
F++SRWWI+VIRDPYE D AMEFTHKFFK+IM RSSK+HV+DELQLPPQEECVSWLTF
Sbjct: 658 FNVSRWWIDVIRDPYERRDADAMEFTHKFFKQIMWRSSKIHVADELQLPPQEECVSWLTF 717
Query: 716 SPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNS 775
S IE+HFYQ QHETCV YAREVI KD+++KR VPG S+DA +P+ITHAEAAKLLNS
Sbjct: 718 SAIEKHFYQMQHETCVSYAREVIGSFKDDVVKRKVPGCVSTDASTDPLITHAEAAKLLNS 777
Query: 776 LLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835
LLKLRQACCHPQVGSSGLRSLQQSP++M+EILMV +GK KIEGEEALRKLV+ALN LAGI
Sbjct: 778 LLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVFVGKMKIEGEEALRKLVVALNALAGI 837
Query: 836 ALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNE 895
A++E+N QAVSLYKEA+A+ EEH EDFRLDPLLNIH+HHNL +IL +V + +TE+ N
Sbjct: 838 AILEQNFPQAVSLYKEALALSEEHLEDFRLDPLLNIHIHHNLADILALVMDHSTEVPSNG 897
Query: 896 QHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFT-DAEDPSGHLSDLSENGFNGDR 954
Q G SEKA KI+ ETCD N K Q+ S E+SDFT DA G+ DLSEN G++
Sbjct: 898 QQLHGNSEKASKINKSETCDLNDAKKQKAS-GEDSDFTIDA----GNSLDLSENCSVGNK 952
Query: 955 KSDCC--VSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREK 1012
K + +SS+SF L T CEN KQKYLS FS KLS AQ +F KSY QVCNA +R+
Sbjct: 953 KGNNNHDMSSTSFSTQYLRTACENFKQKYLSVFSSKLSAAQLDFNKSYTQVCNAFGERKN 1012
Query: 1013 QYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSS 1072
++ WWL+AL+HAE NKD + ELIRKIEEA+SG+LN SR+ R ASR RSI+GL YHI +
Sbjct: 1013 LHTVWWLDALNHAEQNKDSTGELIRKIEEAVSGTLNNSRSSRIASRLRSITGLKYHIHTH 1072
Query: 1073 LDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQ 1130
LDQLEASR+TLLDR+LEIDQTM PKEED++R+RHCRIC + DGP CVHCEL+ESFQ
Sbjct: 1073 LDQLEASRQTLLDRILEIDQTMANPKEEDIERVRHCRICQAIDDGPTCVHCELEESFQ 1130
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486454|ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297736470|emb|CBI25341.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449499151|ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449441236|ref|XP_004138388.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|240254615|ref|NP_181609.4| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] gi|330254782|gb|AEC09876.1| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357490295|ref|XP_003615435.1| ATP-dependent helicase, putative [Medicago truncatula] gi|355516770|gb|AES98393.1| ATP-dependent helicase, putative [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297827713|ref|XP_002881739.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327578|gb|EFH57998.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356500801|ref|XP_003519219.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|222637695|gb|EEE67827.1| hypothetical protein OsJ_25598 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1137 | ||||||
| TAIR|locus:2064786 | 1664 | AT2G40770 [Arabidopsis thalian | 0.818 | 0.559 | 0.592 | 4e-296 | |
| UNIPROTKB|E1C615 | 1682 | SHPRH "Uncharacterized protein | 0.366 | 0.247 | 0.398 | 1.6e-100 | |
| UNIPROTKB|E1C5L6 | 1682 | SHPRH "Uncharacterized protein | 0.366 | 0.247 | 0.398 | 1.6e-100 | |
| MGI|MGI:1917581 | 1674 | Shprh "SNF2 histone linker PHD | 0.330 | 0.224 | 0.417 | 7.2e-98 | |
| UNIPROTKB|E2R8G0 | 1685 | SHPRH "Uncharacterized protein | 0.330 | 0.223 | 0.415 | 5.9e-96 | |
| UNIPROTKB|Q149N8 | 1683 | SHPRH "E3 ubiquitin-protein li | 0.330 | 0.223 | 0.412 | 1.8e-95 | |
| UNIPROTKB|E1BLB1 | 1688 | SHPRH "Uncharacterized protein | 0.330 | 0.222 | 0.422 | 9.9e-94 | |
| RGD|1310342 | 1701 | Shprh "SNF2 histone linker PHD | 0.330 | 0.221 | 0.397 | 7.3e-92 | |
| UNIPROTKB|F1S736 | 1688 | SHPRH "Uncharacterized protein | 0.410 | 0.276 | 0.375 | 8.5e-92 | |
| UNIPROTKB|K4DI94 | 1687 | SHPRH "SNF2 histone linker PHD | 0.330 | 0.222 | 0.410 | 8.7e-91 |
| TAIR|locus:2064786 AT2G40770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2843 (1005.8 bits), Expect = 4.0e-296, P = 4.0e-296
Identities = 571/963 (59%), Positives = 701/963 (72%)
Query: 1 MGRRKQSRPHRSGG-VTLXXXXXXXXXXXKQKPHGSEQPEKEELADVDHPFFVEVNRTCW 59
MGRRKQS+P R+ G +T + GS E D+D P++V + +
Sbjct: 1 MGRRKQSKPQRAVGLITPTGSESDRNQLPGDEAEGSGDKNVE---DIDKPYYVNICLSSR 57
Query: 60 LLDE--HLDISEIVLTDLKLREEFSGFIISEDFYQVSR---YTLRLHVCHVNEFIGRIKL 114
+ ++ + D++E+VLT+ +RE +V +LR +C+V F+ RIKL
Sbjct: 58 VSEQQQNFDLAEVVLTNFSVRERVGSSSTFTKPIEVDHDLDCSLRFRLCNVTNFVDRIKL 117
Query: 115 GHWPLLSSNDVTLEFVXXXXXXXXXXXXIMLSGSFDAPDEGITGLVHLASMEFLTLRPTL 174
GHWP+LSS+D+TLE V I S SFD P EG++GL HLAS++FLTLR
Sbjct: 118 GHWPVLSSSDITLELVDNKVSDDEVGSVIW-SASFDGPGEGVSGLAHLASIKFLTLRLMP 176
Query: 175 GITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGV 234
G +E + S RVRVE+L+ AFDAC+SLLEN+R+ WKKSMI+VMSWLRPEV+TSEARYG
Sbjct: 177 G---NEGLLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGT 233
Query: 235 SKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMXXXXXXXXXXXXRPYQ 294
+++ D+E T+++ S K +SFD A FYEAIK SK + M RPYQ
Sbjct: 234 RFNVK-DIESSVVTEDETLDSSKQSSFDAAAFYEAIKPSKTDAMLGDDIADLLPELRPYQ 292
Query: 295 RRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTS 354
RRAAYWMVQRE+GD PL + + FLD+ + +F NPFSG++SL+P+Y S
Sbjct: 293 RRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTPEYFS 352
Query: 355 SYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERV 414
+ GGILADEMGLGKTVELLACIF+HRKPA D+ I + VTD LRRLKRERV
Sbjct: 353 PRIQGGILADEMGLGKTVELLACIFSHRKPAEDE-ISVSNGSSVTDVLNAGLRRLKRERV 411
Query: 415 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFEL-KKHTRKK---DM 470
ECICGAVSES KYKG+WVQCD+CDAWQHADCVGYSP+GK ++ + + +K ++KK D
Sbjct: 412 ECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKSKKDA 471
Query: 471 TNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCI 530
T I+VR+GE+ICQ C EL++ T SP++TGATLIVCPAPIL QW +EITRHTR GSL TCI
Sbjct: 472 TEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCI 531
Query: 531 YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590
YEG RN+SLS+ ++DI+EL+ ADIVLTTYDVLKEDL+HD DRH+GDR +RFQKRYPVI
Sbjct: 532 YEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVI 591
Query: 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650
PT LTRIFWWRICLDEAQMVESNAAAATEMALRLY KHRWCITGTPIQRKLDDL+GLL+F
Sbjct: 592 PTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKF 651
Query: 651 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECV 710
LK++PF +SRWWIEVIRDPYE D AMEFTHKFFK++M RSSKVHV+DELQLPPQEECV
Sbjct: 652 LKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQEECV 711
Query: 711 SWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAA 770
SWL FS IEEHFY QH+TCV YAREVI+ LK +ILKR GH SSD NP++THAEAA
Sbjct: 712 SWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKR---GHTSSD---NPLVTHAEAA 765
Query: 771 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 830
KLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+EILMVL+ KT+ EGEEALR L++ALN
Sbjct: 766 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLIVALN 825
Query: 831 GLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATE 890
G+A IA++++ S+AVSLYKEA+++ EEH+EDFRLDPLLNIH+ HNL EILPM + +
Sbjct: 826 GIAAIAMLKQEFSEAVSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKSYGGK 885
Query: 891 LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGF 950
LS + G E KI + A K QR++ E+ +E + +NG
Sbjct: 886 LSAS-----GRPET--KIDVKDDDHHRASKRQRINELESLTHDSSETVHQREAIAPDNGL 938
Query: 951 NGD 953
D
Sbjct: 939 KKD 941
|
|
| UNIPROTKB|E1C615 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C5L6 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1917581 Shprh "SNF2 histone linker PHD RING helicase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R8G0 SHPRH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q149N8 SHPRH "E3 ubiquitin-protein ligase SHPRH" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BLB1 SHPRH "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|1310342 Shprh "SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S736 SHPRH "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|K4DI94 SHPRH "SNF2 histone linker PHD RING helicase, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1137 | |||
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-38 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 1e-14 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 5e-09 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-05 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 5e-04 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 0.001 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 0.001 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-38
Identities = 77/300 (25%), Positives = 118/300 (39%), Gaps = 60/300 (20%)
Query: 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 557
G TL+VCP L W E + +L+ +Y G M L D+V+
Sbjct: 48 RGPTLVVCPLSTLHNWLNEFEKW--APALRVVVYHGDGRERSKLRQSM-AKRLDTYDVVI 104
Query: 558 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 617
TTY+VL++D S ++ + W R+ LDEA ++++ +
Sbjct: 105 TTYEVLRKDKKLLSLLNKVE---------------------WDRVVLDEAHRLKNSKSKL 143
Query: 618 TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY------- 670
+ +L ++R +TGTPIQ L++L+ LL FL+ PF + + E P
Sbjct: 144 YKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTADNK 203
Query: 671 ----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726
E G G HK K + R +K V E LPP+ E V + S + Y+
Sbjct: 204 NKNLEKGKEGINRL-HKLLKPFLLRRTKDDV--EKSLPPKTEHVLYCNLSDEQRKLYK-- 258
Query: 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786
+ L R A N I LLN +++LR+ C HP
Sbjct: 259 ------------KLLTKR---RLALSFAVEGGEKNVGIAS-----LLNLIMQLRKICNHP 298
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1137 | |||
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.9 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.78 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.47 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.34 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.34 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.3 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.3 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 98.92 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 98.91 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 98.87 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 98.71 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.62 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 98.57 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 98.53 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 98.48 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.43 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 98.33 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 98.27 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.26 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 98.24 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 98.24 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 98.23 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 98.19 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 98.19 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 98.14 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 98.13 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 98.08 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 98.08 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 98.06 | |
| PTZ00424 | 401 | helicase 45; Provisional | 98.05 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 98.02 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 97.98 | |
| PTZ00110 | 545 | helicase; Provisional | 97.97 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 97.93 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 97.85 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 97.83 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 97.82 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 97.72 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 97.7 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 97.7 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 97.69 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 97.69 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 97.67 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 97.57 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 97.56 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.52 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 97.43 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 97.39 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 97.33 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 97.27 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 97.26 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.18 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.14 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 97.04 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 96.86 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 96.78 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 96.75 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 96.62 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 96.47 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 95.95 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 95.7 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 95.5 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 95.49 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 95.35 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 95.09 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 94.6 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 94.49 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 94.43 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 94.21 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 93.66 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 93.5 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 93.21 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 92.99 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 92.92 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 92.76 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 92.58 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 91.81 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 91.62 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 91.55 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 91.11 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 90.92 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 90.9 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 90.83 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 90.75 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 90.62 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 90.19 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 89.56 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 87.62 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 87.35 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 86.72 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 86.26 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 86.02 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 85.93 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 85.92 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 85.14 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 84.05 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 83.86 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 83.85 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 83.7 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 83.19 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 82.42 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 81.14 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 80.15 |
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-84 Score=782.35 Aligned_cols=946 Identities=26% Similarity=0.286 Sum_probs=726.7
Q ss_pred CCCCeEEEEcCcccccc--CCCchhhhhhccccccccc---cceeeecccccccceEEEEEEccccccccceeccCCCcc
Q 001153 46 VDHPFFVEVNRTCWLLD--EHLDISEIVLTDLKLREEF---SGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLL 120 (1137)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1137)
++.|+.++.+.+...+. +..+..++|++.++....+ +++...-+..++..+ +|+.|++.+||.+++.||||+.
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vit~~s~l~r~~~~~t~t~~~~~~~~~~~--~~~~~~~~n~v~~~~~~~~~~~ 81 (1394)
T KOG0298|consen 4 KYPLDESMSEDEEYIETWKDLPKNRVIVITKRSPLVRGVLLRTITSHFQIPAAQYG--TLLAYVSDNVVRFYAETYRRNN 81 (1394)
T ss_pred ccchhhhhhhhHHHHHHHHhcCCCceEEEecCChhhhcceeeEEeecccchhhhcc--eeEeecchhHHHHHHhhhcccC
Confidence 44555555554433322 4788999999999988776 455555555555544 9999999999999999999999
Q ss_pred cCCcchhhHHHHhhccccceeeEEEecccCCCCcccchhhhhhhcceEEEeecCCcCcccCcccceeeeeeccchhhhhh
Q 001153 121 SSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACE 200 (1137)
Q Consensus 121 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~ 200 (1137)
++-+++++++......+ +.....++-+|+++.++.++.++...+-+++++-..+ ........+++.-+...++.|.
T Consensus 82 s~~d~~~~~~~~k~~~~-~~~es~~~~~~~~~~~~~s~~~~~~~~~~l~~ic~~~---Nq~r~t~~l~~~ki~~s~~s~~ 157 (1394)
T KOG0298|consen 82 SPMDGTVLCEDNKEVPP-ESPESPTLFSYGKKREVFSDNAVEHKGIELILICIPK---NQNRRTRYLKVRKIRQSSGSCI 157 (1394)
T ss_pred CccccceeeccccccCC-CCCCcchHHHhcccccccchHHHHhhcchhhhhcccc---cccccchhhhHHHHhccchhhh
Confidence 99999999988777777 7888999999999999999999999998877763222 3344456778888888999999
Q ss_pred hhcccchHHHHHHHHHHhhhcCCcccCcccccccccccchhhhhhccccccccccccCCCCCHHHHHHHcccCCCCCCcc
Q 001153 201 SLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLE 280 (1137)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~y~~i~~~~~~~~~~ 280 (1137)
..+.++.+-|++.|...|.|.++..++....|+...+... .........+-........||-..++..+.+........
T Consensus 158 ~~lt~t~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~d-~e~~~~l~~~~k~t~~n~~~d~~~~~~~i~~l~~s~~~~ 236 (1394)
T KOG0298|consen 158 LVLTNTQTHVRKRLIREMIVGLQKLTLFFKDFPGSFEFKD-AEQEKVLKFELKTTSTNKLFDALYEKHRITVLVESERSL 236 (1394)
T ss_pred HhhhhhhhhHHHHHHHHHHhcccccccccccCCceeeech-HHHHHHHhhhhhhhhhhhhhhhHHhhhhccccchhccCc
Confidence 9999999999999999999999999988877775433111 001111111112222345567666777666544433333
Q ss_pred CCCCCccCCChHHHHHHHHHHHHcccCCCCC------CchhhcccccCCCCCCccccCccccceeccCCCcccCCCCCCC
Q 001153 281 EDLPDLLPLLRPYQRRAAYWMVQREKGDSAS------SSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTS 354 (1137)
Q Consensus 281 ~~~p~L~~~LrPyQ~~aV~WMl~RE~~~~~~------~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~ 354 (1137)
+.+..+.+++|+||.+++.||.+||..-... ....+..+...++-.++.+.+-+..+ +..
T Consensus 237 D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l--------------~~e 302 (1394)
T KOG0298|consen 237 DLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEEL--------------PKE 302 (1394)
T ss_pred hHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccc--------------hhc
Confidence 3345688999999999999999999854221 01111111111111111111111111 122
Q ss_pred CCcccceeecCCCccHHHHHHHHHHHhcCCCCCCccccccccccchhhhhHHHhhhhhhhhhhccccccccccccccccc
Q 001153 355 SYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQC 434 (1137)
Q Consensus 355 ~~~rGGILADEMGLGKTvq~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~c~~~~~~~~~~~~~v~C 434 (1137)
+...||.+|||||||||++-+|++..|+.+... ++........|.|+...+...+.+.|++|
T Consensus 303 ~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~~ 364 (1394)
T KOG0298|consen 303 SLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKDE 364 (1394)
T ss_pred cCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhhH
Confidence 345689999999999999999999999877321 23444556778888888888888888888
Q ss_pred cccccccccc-------ccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhhhccCCCCCCCcEEEEeCC
Q 001153 435 DICDAWQHAD-------CVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPA 507 (1137)
Q Consensus 435 ~~c~~w~h~~-------Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P~ 507 (1137)
..|..|.++. |-|+.-... . ..........+.|..|.+.....+.+..+|+||||||.
T Consensus 365 ~~~~~~~~~g~~~~~ade~~~qk~~~--------------~-l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~ 429 (1394)
T KOG0298|consen 365 VLCSGDKKHGKRVQCADEMGWQKTSE--------------K-LILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN 429 (1394)
T ss_pred HhhcCCccCCcceeehhhhhccchHH--------------H-HHHHHhcccccchhhhhHHHhcccceeecCceEEECcH
Confidence 8888887764 222211100 0 01112235556677788888888889999999999999
Q ss_pred chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccchhhhhhcccC
Q 001153 508 PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRY 587 (1137)
Q Consensus 508 SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kr~ 587 (1137)
+++.||-.||.+|+++ .++|+.|.|.++.... .+..+.+||||+|||++|+.++.|. ...++.|.+|++++|
T Consensus 430 aIl~QW~~EI~kH~~~-~lKv~~Y~Girk~~~~-----~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr~ 501 (1394)
T KOG0298|consen 430 AILMQWFEEIHKHISS-LLKVLLYFGIRKTFWL-----SPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSRY 501 (1394)
T ss_pred HHHHHHHHHHHHhccc-cceEEEEechhhhccc-----CchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccCC
Confidence 9999999999999985 3799999999877543 4588899999999999999999875 567889999999999
Q ss_pred CCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCCchhhhhhhhc
Q 001153 588 PVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIR 667 (1137)
Q Consensus 588 ~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~~~~F~~~~~ 667 (1137)
+.+++||..+.|||||||||||+.+..|++++|+.+|++.|||++||||||+ ++|||+||.||+..||+...+|.+.+.
T Consensus 502 ~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~ 580 (1394)
T KOG0298|consen 502 MRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVD 580 (1394)
T ss_pred CCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999998
Q ss_pred CCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 001153 668 DPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILK 747 (1137)
Q Consensus 668 ~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~~~~~l~~~~~~~~~ 747 (1137)
.++... .....+..++...++|+.|.+|..++.+||+.+.+.++.+++.|.++|+..+..|+.+++..+..++.+.+.
T Consensus 581 ~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~ 658 (1394)
T KOG0298|consen 581 KAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLD 658 (1394)
T ss_pred HHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccc
Confidence 877654 455678899999999999999999999999999999999999999999999999999999888887766542
Q ss_pred ccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHH
Q 001153 748 RNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVM 827 (1137)
Q Consensus 748 r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Ll~~~~~e~eea~rkvLi 827 (1137)
. ..+.+.+++.....++.+|++|||+||||+++.+++.+.+.. +++|+|..|+.+...++.+..|....
T Consensus 659 ~---------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~~ 727 (1394)
T KOG0298|consen 659 N---------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLAS 727 (1394)
T ss_pred c---------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 1 122234567778899999999999999999999988877555 89999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHhhh-cCCCCcCeeEEecCCcCCcchhhhhhhhhhcCCCCceEE
Q 001153 828 ALNGLAGIALIEKNLSQA----VSLYKEAMAVVEEHSEDF-RLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCS 902 (1137)
Q Consensus 828 fsq~~a~L~iLe~~l~~a----~~~y~~~l~~~~~~~~~f-~~D~~~~lh~~~Nl~dwnp~~d~QA~r~~riGQ~~~v~v 902 (1137)
.+++++.+..+.+++..+ ...|+..+....+..++. -.|...+.|-.+++. ++.
T Consensus 728 ~~~~~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~--~~~------------------- 786 (1394)
T KOG0298|consen 728 SKNGLAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLL--QAS------------------- 786 (1394)
T ss_pred HhhhhHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhh--ccc-------------------
Confidence 999999999999988853 445555555443332221 123333333344333 110
Q ss_pred EEcccCCcccccchhHhhhhccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCcCCCCCcCChhhHHHHHHHHHHHHh
Q 001153 903 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYL 982 (1137)
Q Consensus 903 ~rl~~~~tiee~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~l~~~yl 982 (1137)
.+-.-+......++++.-.... .+ ++....|.+ -.+.--|..++++|+
T Consensus 787 -----~~~~sd~~~~~~~~~~~~~~~s-~~--------------~~~~~~d~~------------~~~~~~~q~~~~kl~ 834 (1394)
T KOG0298|consen 787 -----SLAPSDRKLTELEHKKYQAQMS-RL--------------EWKYLEDET------------RVLYSLLQDLNEKLE 834 (1394)
T ss_pred -----cccchhhhHHHHHHHhhhhhhc-cc--------------cchhhchhh------------HHHHHHHHHHHHHHH
Confidence 0000011111122222111111 00 011111111 135667899999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhhhcCccchHHHHHHHHHHhhcCccccchhhhcccccCc
Q 001153 983 SGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSI 1062 (1137)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1137)
+++..+...++.+|...+.++.+.++.++.....||++.....+.+.++..+|-. ++.+++.+
T Consensus 835 s~~~~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLra-----------------i~~~~~~i 897 (1394)
T KOG0298|consen 835 SVSILKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELRA-----------------IAFRARFI 897 (1394)
T ss_pred HHHhhhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHHH-----------------HHhhhhcc
Confidence 9999999999999999999999999999999999999999999999888777762 67789999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCHhHhhhcccCcccccCCCCCccccccchhhHHHHhhccC
Q 001153 1063 SGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQVCYSNLL 1137 (1137)
Q Consensus 1063 ~~l~~~l~~~l~~l~~~r~~~~~~~~~~~~~~~~p~~~dv~~~~~C~~c~~~~~g~~C~~C~~~~~f~~ye~~l~ 1137 (1137)
.+++..|++...+|..++..+..++.+|++.++++...++.+...|..|-....++.|.+|.+|..++.|+++.|
T Consensus 898 ~i~~l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~ 972 (1394)
T KOG0298|consen 898 HIMKLKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHR 972 (1394)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1137 | ||||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 3e-13 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 7e-13 | ||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 7e-07 |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-27
Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 81/299 (27%)
Query: 497 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 556
+L++CP +L W+ E+++ P L+ ++ R+ +L DI+
Sbjct: 85 ELTPSLVICPLSVLKNWEEELSKFA-P-HLRFAVFHEDRSKI----------KLEDYDII 132
Query: 557 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 616
LTTY VL D L + W I +DEAQ ++ N
Sbjct: 133 LTTYAVLLRDTR-------------------------LKEVEWKYIVIDEAQNIK-NPQT 166
Query: 617 ATEMALR-LYAKHRWCITGTPIQRKLDDLYGLLRFL------KSSPFSISRWWIEVIRDP 669
A++ L +K+R +TGTPI+ K+DDL+ ++ FL S F P
Sbjct: 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFK------SKFATP 220
Query: 670 YENGDVGAMEFTHKFFKEIMCRSSK--VHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 727
+ GD A E + R +K + ++ LP + E + +P + Y++
Sbjct: 221 IKKGDNMAKEELKAIISPFILRRTKYDKAIIND--LPDKIETNVYCNLTPEQAAMYKA-- 276
Query: 728 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786
+ + + +L++LLKL+Q HP
Sbjct: 277 -----EVENLFNNIDSVTGIKR-------------------KGMILSTLLKLKQIVDHP 311
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1137 | |||
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.95 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.92 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.88 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.83 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.82 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.81 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.81 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.79 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.79 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.74 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.7 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.69 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.63 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.56 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.56 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.52 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.51 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.44 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.37 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.34 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.33 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.33 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.32 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.32 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.28 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.28 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.27 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.23 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.22 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.2 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.14 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.11 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.11 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.1 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.02 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 98.97 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 98.96 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 98.96 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 98.92 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 98.89 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 98.84 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 98.83 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 98.82 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 98.81 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 98.76 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 98.76 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 98.75 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 98.68 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 98.66 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 98.6 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 98.57 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 98.57 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 98.55 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 98.53 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 98.52 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 98.52 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 98.36 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 98.16 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 97.78 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 97.59 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 97.56 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 97.37 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 97.3 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.3 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 97.09 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 97.06 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 96.89 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 96.69 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 96.55 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 96.52 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 96.49 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 96.47 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 96.34 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 96.21 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 96.13 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 96.07 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 96.05 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 96.0 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 95.93 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 95.73 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 95.59 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 95.29 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 95.12 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 94.77 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 94.53 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 94.51 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 94.5 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 94.16 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 94.08 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 93.88 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 93.81 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 93.29 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 93.17 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 92.9 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 92.76 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 92.54 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 92.32 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 92.22 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 92.2 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 92.1 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 91.46 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 91.39 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 91.25 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 90.72 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 90.2 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 89.8 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 89.67 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 89.45 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 88.72 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 88.25 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 87.07 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 86.34 |
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-59 Score=591.37 Aligned_cols=367 Identities=17% Similarity=0.197 Sum_probs=274.1
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc-------cchhhhhcCCcEEEEehHHHhhhcccC
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS-------IMDISELVGADIVLTTYDVLKEDLSHD 570 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~-------~~~~~~l~~~DVVITTYetL~~d~~~~ 570 (1137)
.+|+|||||.+++.||.+||.+|+| .+++.+|+|....+..... ........++|||||||+++.++.
T Consensus 286 ~~~~LIV~P~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~--- 360 (800)
T 3mwy_W 286 NGPHIIVVPLSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR--- 360 (800)
T ss_dssp CSCEEEECCTTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH---
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH---
Confidence 4799999999999999999999997 8999999998654311000 001134467899999999998864
Q ss_pred CCCCccchhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhh
Q 001153 571 SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1137)
Q Consensus 571 ~~~~~~~r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1137)
..|..+.|++||+||||++||..|+.++++..+++.+||+|||||++|++.|||++++|
T Consensus 361 ---------------------~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~f 419 (800)
T 3mwy_W 361 ---------------------AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNF 419 (800)
T ss_dssp ---------------------HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHH
T ss_pred ---------------------HHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 001153 651 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC 730 (1137)
Q Consensus 651 L~p~~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~ 730 (1137)
|.|+.|+....|..... .......+..|+.+++|+|+||+|.+|... ||++.+.+++|+||+.|+.+|+.+....
T Consensus 420 L~p~~~~~~~~~~~~~~---~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~~~~ 494 (800)
T 3mwy_W 420 LMPGRFTIDQEIDFENQ---DEEQEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNILTKN 494 (800)
T ss_dssp HCSCCC---------CC---TTHHHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHHHHC
T ss_pred hCccccCchhhhccccc---chhHHHHHHHHHHHHhHHHhhhhHHhhhhc--cCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999987766532211 112234577899999999999999999765 9999999999999999999999876543
Q ss_pred HhHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccccc----CCCCCH---
Q 001153 731 VGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ----QSPLSM--- 803 (1137)
Q Consensus 731 ~~~~~~~l~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~----~~~~t~--- 803 (1137)
...... + .......+++.+++|||+|+||.+......... ....+.
T Consensus 495 ~~~l~~---------------------~------~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 495 YSALTA---------------------G------AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CC-------------------------------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred HHHHhh---------------------c------cccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 221110 0 001123589999999999999998754332211 111111
Q ss_pred ----------HHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhhhHH---HH--HHHHHHHHHhhhcCCCC
Q 001153 804 ----------DEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVVEEHSEDFRLDPL 868 (1137)
Q Consensus 804 ----------eelL~~Ll~~~~~e~eea~rkvLifsq~~a~L~iLe~~l~~a~~~y---~~--~l~~~~~~~~~f~~D~~ 868 (1137)
-.+|..++.++. +.++++|||+|++.++++|+..+......| .+ ....+++.++.|+....
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~----~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLK----KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT----TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred HHHhhhcChHHHHHHHHHHHHh----hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 123444554443 345899999999999999999887653332 22 23577888889987332
Q ss_pred c---Ce-----------------eEEecCCcCCcchhhhhh-hhhhcCCCCceEEEEcccCCcccccchhHhhhhccccc
Q 001153 869 L---NI-----------------HLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1137)
Q Consensus 869 ~---~l-----------------h~~~Nl~dwnp~~d~QA~-r~~riGQ~~~v~v~rl~~~~tiee~i~~~~k~~~~~~~ 927 (1137)
. .| .++++. +|||+.+.||+ |||||||+++|.||||++++|+||+|.+++++|.....
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~-~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~ 702 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDS-DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEY 702 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSC-CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC
T ss_pred CceEEEEecccccCCCCccccceEEEecC-CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 1 11 334444 69999999999 99999999999999999999999999999999886544
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1137 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 2e-11 | |
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 3e-04 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 5e-08 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 8e-08 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 2e-04 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 5e-07 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 9e-07 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 2e-06 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 5e-05 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 63.1 bits (152), Expect = 2e-11
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653
L + W I +DEAQ +++ + L +K+R +TGTPI+ K+DDL+ ++ FL
Sbjct: 120 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 179
Query: 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLP 704
+ P + GD A E + R +K + LP
Sbjct: 180 GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 230
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1137 | |||
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.87 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.83 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.72 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.6 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.46 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.18 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.95 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.94 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.75 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.52 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.45 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.33 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.33 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 98.14 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 97.72 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 97.71 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 97.69 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 97.67 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 97.54 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 97.54 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 97.42 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 97.08 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 97.0 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 96.9 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 96.03 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 95.59 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 94.72 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 94.61 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 91.87 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 84.45 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 83.68 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 81.93 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.2e-45 Score=393.25 Aligned_cols=170 Identities=28% Similarity=0.477 Sum_probs=150.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCcEEEEehHHHhhhcccCCCCCccc
Q 001153 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1137)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~EI~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1137)
.+++|||||++++.||.+|+.+|+. ..++..+++.... ....+++||||+|+.+.+..
T Consensus 61 ~~~~LIv~p~~l~~~W~~e~~~~~~--~~~~~~~~~~~~~----------~~~~~~~vvi~~~~~~~~~~---------- 118 (230)
T d1z63a1 61 LTPSLVICPLSVLKNWEEELSKFAP--HLRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDT---------- 118 (230)
T ss_dssp CSSEEEEECSTTHHHHHHHHHHHCT--TSCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCH----------
T ss_pred ccccceecchhhhhHHHHHHHhhcc--cccceeeccccch----------hhccCcCEEEeeHHHHHhHH----------
Confidence 3689999999999999999999997 6777777654332 23456899999999998642
Q ss_pred hhhhhhcccCCCcchhccccceeEEEecccccccChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhhccCCCCC
Q 001153 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1137)
Q Consensus 578 r~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~IKN~~S~~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1137)
.+..+.|++||+||||++||+.+++++++..+++++||+|||||++|++.|||++++||+|++|+
T Consensus 119 ---------------~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~ 183 (230)
T d1z63a1 119 ---------------RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLG 183 (230)
T ss_dssp ---------------HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTC
T ss_pred ---------------HHhcccceEEEEEhhhcccccchhhhhhhhhhccceEEEEecchHHhHHHHHHHHHHhhCCCcCC
Confidence 47788999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCCCCCCCcchHHHHHHHHhhHhhcccccccccCCCCC
Q 001153 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLP 704 (1137)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LP 704 (1137)
+...|.+.|..|+..++....++|+.++++||+||+|+|+.-.++||
T Consensus 184 ~~~~F~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~K~d~~v~~dLP 230 (230)
T d1z63a1 184 SYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 230 (230)
T ss_dssp CHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSC
T ss_pred CHHHHHHHHhhhhhccCHHHHHHHHHHhhccEEEEecCCccHhhcCC
Confidence 99999999999999998889999999999999999999953334587
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|